Citrus Sinensis ID: 015038
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 414 | 2.2.26 [Sep-21-2011] | |||||||
| A3KPF2 | 528 | Probable histone-arginine | yes | no | 0.973 | 0.763 | 0.817 | 0.0 | |
| Q7XI75 | 528 | Probable histone-arginine | yes | no | 0.896 | 0.702 | 0.844 | 0.0 | |
| A2YPT7 | 528 | Probable histone-arginine | N/A | no | 0.896 | 0.702 | 0.844 | 0.0 | |
| Q84W92 | 535 | Probable histone-arginine | no | no | 0.944 | 0.730 | 0.812 | 0.0 | |
| Q6DC04 | 588 | Histone-arginine methyltr | yes | no | 0.840 | 0.591 | 0.534 | 1e-106 | |
| B3M1E1 | 531 | Histone-arginine methyltr | N/A | no | 0.823 | 0.642 | 0.531 | 1e-104 | |
| B4KA23 | 539 | Histone-arginine methyltr | N/A | no | 0.823 | 0.632 | 0.531 | 1e-103 | |
| B4NKI9 | 533 | Histone-arginine methyltr | N/A | no | 0.826 | 0.641 | 0.521 | 1e-103 | |
| B4JXV2 | 544 | Histone-arginine methyltr | N/A | no | 0.823 | 0.626 | 0.528 | 1e-103 | |
| B4LVS8 | 538 | Histone-arginine methyltr | N/A | no | 0.823 | 0.633 | 0.528 | 1e-103 |
| >sp|A3KPF2|ANM14_ARATH Probable histone-arginine methyltransferase 1.4 OS=Arabidopsis thaliana GN=PRMT14 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/411 (81%), Positives = 365/411 (88%), Gaps = 8/411 (1%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
LPNG V + KSKFDDK+E +SAKMYFHYYGQLLHQQNMLQDYVRTGTY+AAV+ENR+DF
Sbjct: 126 LPNGTVVSANKSKFDDKIEAASAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVMENRSDF 185
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILS+FAA AGAKHVYAVEASEMAEYARKLIAGNP L ERITVIKGK+
Sbjct: 186 SGRVVVDVGAGSGILSMFAALAGAKHVYAVEASEMAEYARKLIAGNPLLAERITVIKGKI 245
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E++ELPEKAD+LISEPMGTLLVNERMLETYVIARDRFL P GKMFP+VGRIHMAPF+DE+
Sbjct: 246 EDIELPEKADVLISEPMGTLLVNERMLETYVIARDRFLSPNGKMFPTVGRIHMAPFADEF 305
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LFVE+ANKALFWQQQNYYGVDLTPLY SA GYFSQPVVDAFDPRLLVAP++ HVIDF
Sbjct: 306 LFVEMANKALFWQQQNYYGVDLTPLYVSAHQGYFSQPVVDAFDPRLLVAPSMFHVIDFTM 365
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
EE YEIDIPLKF +SV TR+HGLACWFDVLFDGSTVQRW TTAPGAPTTHWYQ+RCV
Sbjct: 366 MTEEQFYEIDIPLKFTASVCTRIHGLACWFDVLFDGSTVQRWFTTAPGAPTTHWYQIRCV 425
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP++VMAGQEITG+L +IAHSAQSYTI LTLS KMWGPGA+QGGILQTSSCKLDLKEP
Sbjct: 426 LSQPIHVMAGQEITGRLHLIAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEP 485
Query: 363 YYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
YYRMSQPQ Y Q+P SQDI I +DDLEE EL+Q Q + AQL
Sbjct: 486 YYRMSQPQVY---PTQEPP--AQSQDIHIHSDDLEELELLQ---QNANAQL 528
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q7XI75|CARM1_ORYSJ Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. japonica GN=CARM1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/372 (84%), Positives = 348/372 (93%), Gaps = 1/372 (0%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG + GS KSKFD K+E SSAKMYFHYYGQLLHQQNMLQD+VRTGTYYAAV+ENR+DF
Sbjct: 132 LENGLIIGS-KSKFDTKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDF 190
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGA+HVYAVEASEMAE+A++LI+GNPSLG+RITVIKGKV
Sbjct: 191 EGRVVVDVGAGSGILSLFAAQAGARHVYAVEASEMAEHAQRLISGNPSLGQRITVIKGKV 250
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
EEVELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+ GRIHMAPFSDEY
Sbjct: 251 EEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEY 310
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
L+VE+ANKALFWQQ N++GVDLTPL+GSAF GYFSQPVVDAFDPRLLV+P H +DF
Sbjct: 311 LYVEMANKALFWQQHNFFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVSPPTFHTLDFTT 370
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE LYEIDIPL F++SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC+
Sbjct: 371 MKEEELYEIDIPLNFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCI 430
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQPLYVMAGQEITG+L ++AHSAQSYTIYLT+S KMWG GA+QGGILQTS+ KL+LKEP
Sbjct: 431 LSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEP 490
Query: 363 YYRMSQPQPYVL 374
YYR+SQPQPYV+
Sbjct: 491 YYRLSQPQPYVM 502
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|A2YPT7|CARM1_ORYSI Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. indica GN=CARM1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/372 (84%), Positives = 348/372 (93%), Gaps = 1/372 (0%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG + GS KSKFD K+E SSAKMYFHYYGQLLHQQNMLQD+VRTGTYYAAV+ENR+DF
Sbjct: 132 LENGLIIGS-KSKFDTKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDF 190
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGA+HVYAVEASEMAE+A++LI+GNPSLG+RITVIKGKV
Sbjct: 191 EGRVVVDVGAGSGILSLFAAQAGARHVYAVEASEMAEHAQRLISGNPSLGQRITVIKGKV 250
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
EEVELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+ GRIHMAPFSDEY
Sbjct: 251 EEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEY 310
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
L+VE+ANKALFWQQ N++GVDLTPL+GSAF GYFSQPVVDAFDPRLLV+P H +DF
Sbjct: 311 LYVEMANKALFWQQHNFFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVSPPTFHTLDFTT 370
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE LYEIDIPL F++SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC+
Sbjct: 371 MKEEELYEIDIPLNFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCI 430
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQPLYVMAGQEITG+L ++AHSAQSYTIYLT+S KMWG GA+QGGILQTS+ KL+LKEP
Sbjct: 431 LSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEP 490
Query: 363 YYRMSQPQPYVL 374
YYR+SQPQPYV+
Sbjct: 491 YYRLSQPQPYVM 502
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q84W92|ANM13_ARATH Probable histone-arginine methyltransferase 1.3 OS=Arabidopsis thaliana GN=PRMT13 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/395 (81%), Positives = 353/395 (89%), Gaps = 4/395 (1%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG VS + KSKFD+K+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAV+EN +DF
Sbjct: 124 LQNGTVSAN-KSKFDNKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENHSDF 182
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILS+FAAQAGAKHVYAVEASEMAEYARKLIAGNP +RITVIKGKV
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEASEMAEYARKLIAGNPLFADRITVIKGKV 242
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E++ELPEKADILISEPMGTLLVNERMLE+YVIARDRF+ P GKMFP+VGRIHMAPFSDE+
Sbjct: 243 EDIELPEKADILISEPMGTLLVNERMLESYVIARDRFMTPKGKMFPTVGRIHMAPFSDEF 302
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LF+E+ANKA+FWQQQNYYGVDLTPLYGSA GYFSQPVVDAFDPRLLVA + H+IDF +
Sbjct: 303 LFIEMANKAMFWQQQNYYGVDLTPLYGSAHQGYFSQPVVDAFDPRLLVASPMFHMIDFTQ 362
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE+ YEIDIPLKF +S+ TR+HGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQ+RCV
Sbjct: 363 MKEEDFYEIDIPLKFTASMCTRMHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQIRCV 422
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP+YVMAGQEITG+L +IAHSAQSYTI LTLS KMWGPGA QGGILQ+S+CK DLKEP
Sbjct: 423 LSQPIYVMAGQEITGRLHLIAHSAQSYTIDLTLSAKMWGPGASQGGILQSSTCKFDLKEP 482
Query: 363 YYRMSQPQPYVLTQDQ--QPH-QLMHSQDIPIQAD 394
YYRMSQPQ Y + Q+ QP +L QDI D
Sbjct: 483 YYRMSQPQAYPVAQEPPLQPQPELSTQQDIQTPND 517
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability. Recruited to promoters upon gene activation, methylates histone H3 and activates transcription via chromatin remodeling. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6DC04|CARM1_DANRE Histone-arginine methyltransferase CARM1 OS=Danio rerio GN=carm1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/359 (53%), Positives = 249/359 (69%), Gaps = 11/359 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
+S F D+ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF +VV+DVG
Sbjct: 108 RSVFSDRTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKVVLDVGC 167
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FAAQAGA+ VYAVEAS MA++A L+ N L ER+ VI GKVEEV LPE+ D
Sbjct: 168 GSGILSFFAAQAGARKVYAVEASTMAQHAEVLVNSN-RLSERVVVIPGKVEEVSLPEQVD 226
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
I+ISEPMG +L NERMLE+Y+ A+ +FL P GKMFP++G +H+APF+DE L++E KA
Sbjct: 227 IIISEPMGYMLFNERMLESYLHAK-KFLKPSGKMFPTIGDVHLAPFTDEQLYMEQFTKAN 285
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q +++GVDL+ L G+A YF QP+VD FD R+L+A +V + ++F + KEE+LY+I+
Sbjct: 286 FWYQPSFHGVDLSALRGAAVDEYFRQPIVDTFDIRILMAKSVKYTVNFLEAKEEDLYKIE 345
Query: 253 IPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAG 312
IP KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+L PL+ AG
Sbjct: 346 IPFKFHMMHSGLVHGLAFWFDVAFIGSVMTVWLSTAPTEPLTHWYQVRCLLQSPLFAKAG 405
Query: 313 QEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
++G +IA+ QSY I + V DQ G SS LDLK P++R + P
Sbjct: 406 DTMSGTALLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYTGTTP 455
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in several proteins involved in DNA packaging, transcription regulation, pre-mRNA splicing, and mRNA stability. Recruited to promoters upon gene activation together with histone acetyltransferases from EP300/P300 and p160 families, methylates histone H3 at 'Arg-17' (H3R17me) and activates transcription via chromatin remodeling. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B3M1E1|CARM1_DROAN Histone-arginine methyltransferase CARMER OS=Drosophila ananassae GN=Art4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/354 (53%), Positives = 247/354 (69%), Gaps = 13/354 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 129 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGA 188
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 189 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 247
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKMFP+ G +H+APFSDE L+ E NKA
Sbjct: 248 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMFPTHGDLHIAPFSDESLYSEQYNKAN 306
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 307 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHVID 366
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F G+T WL+T+P AP THWYQ+RC+L P+++
Sbjct: 367 IPLEFHILQTGI-CHGLAFWFDVEFSGTTQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 425
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYR 365
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R
Sbjct: 426 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 470
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in proteins. May methylate histone H3 at 'Arg-17' and activate transcription via chromatin remodeling. Drosophila ananassae (taxid: 7217) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B4KA23|CARM1_DROMO Histone-arginine methyltransferase CARMER OS=Drosophila mojavensis GN=Art4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/354 (53%), Positives = 247/354 (69%), Gaps = 13/354 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF +VV+DVGA
Sbjct: 137 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNAIDFQDKVVLDVGA 196
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 197 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 255
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 256 VIISEPMGYMLYNERMLETYLHAR-KWLKPHGKMYPTHGDLHIAPFSDESLYSEQYNKAN 314
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 315 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHVID 374
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++
Sbjct: 375 IPLEFHILQTGI-CHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 433
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYR 365
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R
Sbjct: 434 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 478
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in proteins. May methylate histone H3 at 'Arg-17' and activate transcription via chromatin remodeling. Drosophila mojavensis (taxid: 7230) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B4NKI9|CARM1_DROWI Histone-arginine methyltransferase CARMER OS=Drosophila willistoni GN=Art4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/353 (52%), Positives = 246/353 (69%), Gaps = 11/353 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++++DVGA
Sbjct: 131 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNAIDFQDKIILDVGA 190
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 191 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 249
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 250 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKAN 308
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L++ID
Sbjct: 309 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHKID 368
Query: 253 IPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAG 312
IPL+F HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++ G
Sbjct: 369 IPLQFHILQTGICHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQG 428
Query: 313 QEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYR 365
Q +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R
Sbjct: 429 QTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 472
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in proteins. May methylate histone H3 at 'Arg-17' and activate transcription via chromatin remodeling. Drosophila willistoni (taxid: 7260) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B4JXV2|CARM1_DROGR Histone-arginine methyltransferase CARMER OS=Drosophila grimshawi GN=Art4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/354 (52%), Positives = 246/354 (69%), Gaps = 13/354 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 138 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGA 197
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 198 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 256
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSD+ L+ E NKA
Sbjct: 257 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDDSLYSEQYNKAN 315
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE +L+ ID
Sbjct: 316 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKENDLHLID 375
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GST WL+T+P AP THWYQ+RC+L P+++
Sbjct: 376 IPLEFHILQTGI-CHGLAFWFDVEFSGSTQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 434
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYR 365
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R
Sbjct: 435 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 479
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in proteins. May methylate histone H3 at 'Arg-17' and activate transcription via chromatin remodeling. Drosophila grimshawi (taxid: 7222) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B4LVS8|CARM1_DROVI Histone-arginine methyltransferase CARMER OS=Drosophila virilis GN=Art4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/354 (52%), Positives = 247/354 (69%), Gaps = 13/354 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 136 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGA 195
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 196 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 254
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 255 VIISEPMGYMLYNERMLETYLHAR-KWLKPHGKMYPTHGDLHIAPFSDESLYSEQYNKAN 313
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 314 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHVID 373
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++
Sbjct: 374 IPLEFHILQTGI-CHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 432
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYR 365
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R
Sbjct: 433 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFR 477
|
Methylates (mono- and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in proteins. May methylate histone H3 at 'Arg-17' and activate transcription via chromatin remodeling. Drosophila virilis (taxid: 7244) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 414 | ||||||
| 255551749 | 541 | protein arginine n-methyltransferase, pu | 0.997 | 0.763 | 0.891 | 0.0 | |
| 118486172 | 544 | unknown [Populus trichocarpa] | 0.992 | 0.755 | 0.888 | 0.0 | |
| 356519972 | 1010 | PREDICTED: probable histone-arginine met | 0.985 | 0.403 | 0.850 | 0.0 | |
| 357478775 | 534 | Protein arginine N-methyltransferase [Me | 0.992 | 0.769 | 0.849 | 0.0 | |
| 356564063 | 535 | PREDICTED: probable histone-arginine met | 0.992 | 0.768 | 0.844 | 0.0 | |
| 225432318 | 525 | PREDICTED: probable histone-arginine met | 0.971 | 0.765 | 0.853 | 0.0 | |
| 356556084 | 544 | PREDICTED: probable histone-arginine met | 0.995 | 0.757 | 0.825 | 0.0 | |
| 449450682 | 540 | PREDICTED: probable histone-arginine met | 0.990 | 0.759 | 0.839 | 0.0 | |
| 356529581 | 537 | PREDICTED: probable histone-arginine met | 0.995 | 0.767 | 0.820 | 0.0 | |
| 42573634 | 526 | histone-arginine methyltransferase CARM1 | 0.973 | 0.766 | 0.817 | 0.0 |
| >gi|255551749|ref|XP_002516920.1| protein arginine n-methyltransferase, putative [Ricinus communis] gi|223544008|gb|EEF45534.1| protein arginine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/414 (89%), Positives = 391/414 (94%), Gaps = 1/414 (0%)
Query: 1 MHLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRA 60
+ L NG V+ S KSKFD+K+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENR+
Sbjct: 129 ISLSNGAVTDS-KSKFDNKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRS 187
Query: 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG 120
DF GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG
Sbjct: 188 DFFGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG 247
Query: 121 KVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180
KVEEVELPEKADILISEPMGTLL+NERMLE+YVIARDRFLVP GKMFP+VGRIHMAPFSD
Sbjct: 248 KVEEVELPEKADILISEPMGTLLINERMLESYVIARDRFLVPNGKMFPTVGRIHMAPFSD 307
Query: 181 EYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDF 240
EYLFVEIANKALFWQQQNYYGVDLTPLYGSAF GYFSQPVVDAFDPRLLVAPA+ HV+DF
Sbjct: 308 EYLFVEIANKALFWQQQNYYGVDLTPLYGSAFQGYFSQPVVDAFDPRLLVAPAMLHVLDF 367
Query: 241 KKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLR 300
+ KEE LYEIDIPLKFI+SVGTRVHGLACWFDVLF+GSTVQRWLTTAPGAPTTHWYQLR
Sbjct: 368 TEIKEEELYEIDIPLKFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLR 427
Query: 301 CVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLK 360
CVLSQP+YVMAGQEITG+LRM+AH+AQSYTIYLTLS KMWGPGA+QGGILQTSSCKLDLK
Sbjct: 428 CVLSQPIYVMAGQEITGRLRMVAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLK 487
Query: 361 EPYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQLQ 414
EPYYRMSQPQ Y + QDQQPHQL+H+QDI IQ+DDLEEPELIQ SQ AQLQ
Sbjct: 488 EPYYRMSQPQTYAMAQDQQPHQLIHAQDIQIQSDDLEEPELIQPPSQILDAQLQ 541
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486172|gb|ABK94929.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/413 (88%), Positives = 388/413 (93%), Gaps = 2/413 (0%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
+PNG V+ S KSKF+DK+EPSSAKMYFHYYGQLLHQQNM+QDYVRTGTYYAAVIENRADF
Sbjct: 133 MPNGAVT-SCKSKFEDKIEPSSAKMYFHYYGQLLHQQNMMQDYVRTGTYYAAVIENRADF 191
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLG+RITVIKGKV
Sbjct: 192 FGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGKRITVIKGKV 251
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
EEVELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+VGRIHMAPFSDEY
Sbjct: 252 EEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPNGKMFPTVGRIHMAPFSDEY 311
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LFVEIANKALFWQQQNYYGVDLTPLYGSAF GYFSQPVVDAFDPRLLVAP + HV+DF +
Sbjct: 312 LFVEIANKALFWQQQNYYGVDLTPLYGSAFGGYFSQPVVDAFDPRLLVAPTICHVLDFTE 371
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE+LYEI IPLKFI+SVGTRVHGLACWFDVLF+GSTVQRWLTTAPGAPTTHWYQLRCV
Sbjct: 372 IKEEDLYEIVIPLKFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCV 431
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQPLYVMAGQEITGQLRM+AH+AQSYT+YLTLS KMWGPGA+QGGILQTSSCKLDLKEP
Sbjct: 432 LSQPLYVMAGQEITGQLRMVAHNAQSYTLYLTLSAKMWGPGAEQGGILQTSSCKLDLKEP 491
Query: 363 YYRMSQPQPYVLTQDQQPHQLMHSQDIPIQ-ADDLEEPELIQLQSQCSGAQLQ 414
YYRMSQPQ Y + QDQQPHQ +H+QDI IQ ADDLEEPELIQ Q QLQ
Sbjct: 492 YYRMSQPQAYAMAQDQQPHQPIHTQDIHIQAADDLEEPELIQPPPQNLDGQLQ 544
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519972|ref|XP_003528642.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/409 (85%), Positives = 381/409 (93%), Gaps = 1/409 (0%)
Query: 5 NGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIG 64
NG ++ S KSKFDDK+E SS+KMYFHYYGQLLHQQNMLQDYVRTGTY+AAV+ENR DFIG
Sbjct: 122 NGTITTS-KSKFDDKIESSSSKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVLENRTDFIG 180
Query: 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEE 124
RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNP+L +RITVIKGKVE+
Sbjct: 181 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPTLAQRITVIKGKVED 240
Query: 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184
VELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+VGRIHMAPF+DEYLF
Sbjct: 241 VELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPAGKMFPAVGRIHMAPFTDEYLF 300
Query: 185 VEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTK 244
+EIANKALFWQQQNYYGVDLTPL+G+AF GYFSQPVVDAFDPRLL+AP++ HVIDF K K
Sbjct: 301 IEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPSMFHVIDFTKIK 360
Query: 245 EENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLS 304
EE LYEIDIPL+FI+SVGTRVHGLACWFDVLFDGSTVQRWLTTAPG+PTTHWYQLRCVLS
Sbjct: 361 EEELYEIDIPLRFIASVGTRVHGLACWFDVLFDGSTVQRWLTTAPGSPTTHWYQLRCVLS 420
Query: 305 QPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYY 364
QP+YVMAGQEITG+L +IAH+AQSYTIYLTLS KMWGPGA+QGGILQTSSCKLDLKEPYY
Sbjct: 421 QPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYY 480
Query: 365 RMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
RMSQPQ Y L QDQQ L+ +QDI IQ+ DL+EPE++Q S S AQ+
Sbjct: 481 RMSQPQAYALAQDQQSQPLIQTQDIHIQSQDLDEPEIVQQPSLNSCAQI 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478775|ref|XP_003609673.1| Protein arginine N-methyltransferase [Medicago truncatula] gi|355510728|gb|AES91870.1| Protein arginine N-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/412 (84%), Positives = 382/412 (92%), Gaps = 1/412 (0%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
+LPNG ++ S KSKFD+K+EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD
Sbjct: 117 NLPNGTLTTS-KSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 175
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNP L +RITVIKG+
Sbjct: 176 FTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPKLAQRITVIKGR 235
Query: 122 VEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
VE+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFL P GKMFP VGRIHMAPF+DE
Sbjct: 236 VEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPTGKMFPGVGRIHMAPFTDE 295
Query: 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK 241
YLF+EIANKALFWQQQNYYGVDLTPL+G+AF GYFSQPVVDAFDPRLL+AP + HV+DF
Sbjct: 296 YLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVLDFG 355
Query: 242 KTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRC 301
K KEE LYEIDIPLKFI+SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC
Sbjct: 356 KMKEEELYEIDIPLKFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRC 415
Query: 302 VLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKE 361
VLSQP+YVMAGQEITG+L +IAH+AQSYTIYLTLS KMWGPGA+QGGILQTSSCKLDLKE
Sbjct: 416 VLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKE 475
Query: 362 PYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
PYYRMSQPQ Y L QDQQP L+ +QDI IQ+ +L+EPE++Q S S AQ+
Sbjct: 476 PYYRMSQPQAYPLAQDQQPQPLVQTQDIHIQSQELDEPEIMQQLSPNSCAQI 527
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564063|ref|XP_003550276.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/412 (84%), Positives = 383/412 (92%), Gaps = 1/412 (0%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
++ NG ++ S KSKFD+K+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTY+AAV+ENRAD
Sbjct: 118 NVRNGTITTS-KSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVLENRAD 176
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNP+L +RITVIKGK
Sbjct: 177 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPTLAQRITVIKGK 236
Query: 122 VEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
VE+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP VGRIHMAPF+DE
Sbjct: 237 VEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPTGKMFPGVGRIHMAPFTDE 296
Query: 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK 241
YLF+EIANKALFWQQQNYYGVDLTPL+G+AF GYFSQPVVDAFDPRLL+AP++ HVIDF
Sbjct: 297 YLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPSMFHVIDFT 356
Query: 242 KTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRC 301
K KEE LYEIDIPL+FI+SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC
Sbjct: 357 KIKEEELYEIDIPLRFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRC 416
Query: 302 VLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKE 361
VLSQP+YVMAGQEITG+L +IAH+AQSYTIYLTLS KMWGPGA+QGGILQTSSCKLDLKE
Sbjct: 417 VLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKE 476
Query: 362 PYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
PYYRMSQPQ Y L QDQQP L+ +QDI IQ+ DL+EPE++Q S AQ+
Sbjct: 477 PYYRMSQPQAYALAQDQQPQPLIQTQDIHIQSQDLDEPEIVQQPLPNSCAQI 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432318|ref|XP_002273923.1| PREDICTED: probable histone-arginine methyltransferase 1.4 [Vitis vinifera] gi|297736879|emb|CBI26080.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/404 (85%), Positives = 374/404 (92%), Gaps = 2/404 (0%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
LPNG VS S KSKFDDK+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTY+AAVIENR D
Sbjct: 124 QLPNGTVSTS-KSKFDDKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGTYFAAVIENRTD 182
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLG+RITV+KGK
Sbjct: 183 FTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGKRITVVKGK 242
Query: 122 VEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
VE+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFL+P GKMFP +GRIHMAPFSDE
Sbjct: 243 VEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLIPDGKMFPGIGRIHMAPFSDE 302
Query: 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK 241
YLF+EIANKALFWQQQ+YYGVDLTPLYGSAF GYFSQPVVDAFDPRLLVAP++SH IDF
Sbjct: 303 YLFIEIANKALFWQQQSYYGVDLTPLYGSAFQGYFSQPVVDAFDPRLLVAPSISHTIDFA 362
Query: 242 KTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRC 301
K KEE LYEI+IPLKFIS VG RVHGLACWFDVLF+GSTVQRWLTTAPGAPTTHWYQLRC
Sbjct: 363 KIKEEELYEIEIPLKFISLVGARVHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRC 422
Query: 302 VLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKE 361
VL QPLYVMAGQEITGQLR++AH+AQSYTI+LT+ VKMWGPGA+QG +LQ+SSCKLDLKE
Sbjct: 423 VLLQPLYVMAGQEITGQLRLVAHNAQSYTIHLTMGVKMWGPGAEQGEVLQSSSCKLDLKE 482
Query: 362 PYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQ 405
PYYRMSQPQ Y + DQQ H L+H+QDI IQ D +EP+ ++LQ
Sbjct: 483 PYYRMSQPQAYTVAPDQQQHPLIHAQDIHIQGQDADEPD-VELQ 525
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556084|ref|XP_003546357.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/412 (82%), Positives = 378/412 (91%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
+LPNG + KSKFD+K+EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAV+ENRAD
Sbjct: 125 NLPNGTDVITSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVLENRAD 184
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F+GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKL+AGNP LG+RITVIKGK
Sbjct: 185 FVGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLVAGNPILGQRITVIKGK 244
Query: 122 VEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
VE+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFL+P GKMFP+VGRIHMAPFSDE
Sbjct: 245 VEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLIPNGKMFPTVGRIHMAPFSDE 304
Query: 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK 241
YLFVEIANKALFWQQQNYYGVDLTPL+G+AF GYFSQPVVDAFDPRLL+A + HV+DF
Sbjct: 305 YLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVLDFT 364
Query: 242 KTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRC 301
K KEE LYEIDIPL+F ++VG R+HGLACWFDVLF+GST +RWLTTAPG+PTTHWYQLRC
Sbjct: 365 KIKEEELYEIDIPLRFTATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRC 424
Query: 302 VLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKE 361
VLSQP+YVMAGQEITG++ +IAH+AQSYTI+LTLS K WGPGA+QGGILQTSSCKLDLKE
Sbjct: 425 VLSQPIYVMAGQEITGRMHLIAHTAQSYTIFLTLSAKTWGPGAEQGGILQTSSCKLDLKE 484
Query: 362 PYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
PYYRMSQPQ Y LTQDQQP + +QDI IQ+ DL+E E++Q S S AQ+
Sbjct: 485 PYYRMSQPQAYPLTQDQQPQPFLQTQDIDIQSQDLDEVEIMQQPSPKSCAQI 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450682|ref|XP_004143091.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Cucumis sativus] gi|449508152|ref|XP_004163234.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/412 (83%), Positives = 378/412 (91%), Gaps = 2/412 (0%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
LPNG++S LKSKFDDK+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAV+ENRADF
Sbjct: 127 LPNGEIS-FLKSKFDDKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRADF 185
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYAR LIAGNP+L +RITVIKGKV
Sbjct: 186 TGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKV 245
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFL GKMFP++GRIHMAPFSDEY
Sbjct: 246 EDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEY 305
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LFVE+ANKALFWQQQNYYGVDLT L+GSAF GYFSQPVVDAFDPRLLVA ++SHV+DF
Sbjct: 306 LFVEVANKALFWQQQNYYGVDLTALHGSAFQGYFSQPVVDAFDPRLLVAASMSHVLDFTN 365
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE LY+IDIPLKF++SVG R+HGLACWFDVLF+GSTVQRWLTTAPGAPTTHWYQLRCV
Sbjct: 366 VKEEELYDIDIPLKFVASVGARIHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCV 425
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP+YVMAGQEITG+L M+AHSAQSYT+YLTLS KMWGPGA+QGGILQ+SSCKLDLKEP
Sbjct: 426 LSQPIYVMAGQEITGRLHMVAHSAQSYTLYLTLSAKMWGPGAEQGGILQSSSCKLDLKEP 485
Query: 363 YYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQLQ 414
YYRMSQPQ Y + QDQQ HQL+ SQD+PIQ DLE+ +L+ S SGA L
Sbjct: 486 YYRMSQPQVYPVAQDQQ-HQLIPSQDVPIQPQDLEDADLMLQASPNSGAPLN 536
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529581|ref|XP_003533368.1| PREDICTED: probable histone-arginine methyltransferase 1.4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/412 (82%), Positives = 376/412 (91%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
+LPNG + + KSKFD+K+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAV+ENRAD
Sbjct: 118 NLPNGTNAITSKSKFDEKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVLENRAD 177
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F+GRVV+DVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNP LG+RITVIKGK
Sbjct: 178 FVGRVVIDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGK 237
Query: 122 VEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
VE+VELPEKADILISEPMGTLLVNERMLE+YVIARDRFL P GKMFP+VGRIHMAPFSDE
Sbjct: 238 VEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTVGRIHMAPFSDE 297
Query: 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFK 241
YLFVEIANKALFW+QQNYYGVDLTPL+G+AF GYFSQPVVDAFDPRLL+A + HV+DF
Sbjct: 298 YLFVEIANKALFWRQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVLDFT 357
Query: 242 KTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRC 301
K KEE LYEIDIPLKF ++VG R+HGLACWFDVLF+GST +RWLTTAPG+PTTHWYQLRC
Sbjct: 358 KIKEEELYEIDIPLKFTATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRC 417
Query: 302 VLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKE 361
VLSQP+YVMAGQEITG++ +IAH+AQSYTIYL LS K WGPGA+QGGILQTSSCKLDLKE
Sbjct: 418 VLSQPIYVMAGQEITGRMHLIAHTAQSYTIYLKLSAKTWGPGAEQGGILQTSSCKLDLKE 477
Query: 362 PYYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
PYYRMSQPQ Y L QDQQP L+ +QDI IQ+ +L+E E++Q S S AQ+
Sbjct: 478 PYYRMSQPQAYPLAQDQQPQPLLQTQDIHIQSQELDEVEMMQQPSTKSCAQI 529
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573634|ref|NP_974913.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana] gi|332008377|gb|AED95760.1| histone-arginine methyltransferase CARM1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/411 (81%), Positives = 365/411 (88%), Gaps = 8/411 (1%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
LPNG V + KSKFDDK+E +SAKMYFHYYGQLLHQQNMLQDYVRTGTY+AAV+ENR+DF
Sbjct: 124 LPNGTVVSANKSKFDDKIEAASAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVMENRSDF 183
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILS+FAA AGAKHVYAVEASEMAEYARKLIAGNP L ERITVIKGK+
Sbjct: 184 SGRVVVDVGAGSGILSMFAALAGAKHVYAVEASEMAEYARKLIAGNPLLAERITVIKGKI 243
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E++ELPEKAD+LISEPMGTLLVNERMLETYVIARDRFL P GKMFP+VGRIHMAPF+DE+
Sbjct: 244 EDIELPEKADVLISEPMGTLLVNERMLETYVIARDRFLSPNGKMFPTVGRIHMAPFADEF 303
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LFVE+ANKALFWQQQNYYGVDLTPLY SA GYFSQPVVDAFDPRLLVAP++ HVIDF
Sbjct: 304 LFVEMANKALFWQQQNYYGVDLTPLYVSAHQGYFSQPVVDAFDPRLLVAPSMFHVIDFTM 363
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
EE YEIDIPLKF +SV TR+HGLACWFDVLFDGSTVQRW TTAPGAPTTHWYQ+RCV
Sbjct: 364 MTEEQFYEIDIPLKFTASVCTRIHGLACWFDVLFDGSTVQRWFTTAPGAPTTHWYQIRCV 423
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP++VMAGQEITG+L +IAHSAQSYTI LTLS KMWGPGA+QGGILQTSSCKLDLKEP
Sbjct: 424 LSQPIHVMAGQEITGRLHLIAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEP 483
Query: 363 YYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
YYRMSQPQ Y Q+P SQDI I +DDLEE EL+Q Q + AQL
Sbjct: 484 YYRMSQPQVY---PTQEPP--AQSQDIHIHSDDLEELELLQ---QNANAQL 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 414 | ||||||
| TAIR|locus:2154339 | 528 | PRMT4A "protein arginine methy | 0.973 | 0.763 | 0.822 | 1.3e-178 | |
| TAIR|locus:2077567 | 535 | PRMT4B "protein arginine methy | 0.987 | 0.764 | 0.799 | 8.3e-177 | |
| UNIPROTKB|A2YPT7 | 528 | CARM1 "Probable histone-argini | 0.917 | 0.719 | 0.839 | 7.5e-176 | |
| UNIPROTKB|Q7XI75 | 528 | CARM1 "Probable histone-argini | 0.917 | 0.719 | 0.839 | 7.5e-176 | |
| ZFIN|ZDB-GENE-040724-77 | 588 | carm1 "coactivator-associated | 0.840 | 0.591 | 0.534 | 1.1e-96 | |
| UNIPROTKB|B3M1E1 | 531 | Art4 "Histone-arginine methylt | 0.876 | 0.683 | 0.513 | 4.2e-95 | |
| UNIPROTKB|B4NKI9 | 533 | Art4 "Histone-arginine methylt | 0.876 | 0.681 | 0.507 | 6.8e-95 | |
| UNIPROTKB|B4KA23 | 539 | Art4 "Histone-arginine methylt | 0.876 | 0.673 | 0.513 | 1.4e-94 | |
| UNIPROTKB|B4GZ20 | 531 | Art4 "Histone-arginine methylt | 0.876 | 0.683 | 0.510 | 1.8e-94 | |
| UNIPROTKB|B4JXV2 | 544 | Art4 "Histone-arginine methylt | 0.876 | 0.667 | 0.510 | 1.8e-94 |
| TAIR|locus:2154339 PRMT4A "protein arginine methyltransferase 4A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
Identities = 338/411 (82%), Positives = 367/411 (89%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
LPNG V + KSKFDDK+E +SAKMYFHYYGQLLHQQNMLQDYVRTGTY+AAV+ENR+DF
Sbjct: 126 LPNGTVVSANKSKFDDKIEAASAKMYFHYYGQLLHQQNMLQDYVRTGTYHAAVMENRSDF 185
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILS+FAA AGAKHVYAVEASEMAEYARKLIAGNP L ERITVIKGK+
Sbjct: 186 SGRVVVDVGAGSGILSMFAALAGAKHVYAVEASEMAEYARKLIAGNPLLAERITVIKGKI 245
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E++ELPEKAD+LISEPMGTLLVNERMLETYVIARDRFL P GKMFP+VGRIHMAPF+DE+
Sbjct: 246 EDIELPEKADVLISEPMGTLLVNERMLETYVIARDRFLSPNGKMFPTVGRIHMAPFADEF 305
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LFVE+ANKALFWQQQNYYGVDLTPLY SA GYFSQPVVDAFDPRLLVAP++ HVIDF
Sbjct: 306 LFVEMANKALFWQQQNYYGVDLTPLYVSAHQGYFSQPVVDAFDPRLLVAPSMFHVIDFTM 365
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
EE YEIDIPLKF +SV TR+HGLACWFDVLFDGSTVQRW TTAPGAPTTHWYQ+RCV
Sbjct: 366 MTEEQFYEIDIPLKFTASVCTRIHGLACWFDVLFDGSTVQRWFTTAPGAPTTHWYQIRCV 425
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP++VMAGQEITG+L +IAHSAQSYTI LTLS KMWGPGA+QGGILQTSSCKLDLKEP
Sbjct: 426 LSQPIHVMAGQEITGRLHLIAHSAQSYTINLTLSAKMWGPGANQGGILQTSSCKLDLKEP 485
Query: 363 YYRMSQPQPYVLTQDQQPHQLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
YYRMSQPQ Y TQ+ P Q SQDI I +DDLEE EL+Q Q + AQL
Sbjct: 486 YYRMSQPQVYP-TQEP-PAQ---SQDIHIHSDDLEELELLQ---QNANAQL 528
|
|
| TAIR|locus:2077567 PRMT4B "protein arginine methyltransferase 4B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1717 (609.5 bits), Expect = 8.3e-177, P = 8.3e-177
Identities = 331/414 (79%), Positives = 365/414 (88%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG VS + KSKFD+K+E SSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAV+EN +DF
Sbjct: 124 LQNGTVSAN-KSKFDNKIEASSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENHSDF 182
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILS+FAAQAGAKHVYAVEASEMAEYARKLIAGNP +RITVIKGKV
Sbjct: 183 AGRVVVDVGAGSGILSMFAAQAGAKHVYAVEASEMAEYARKLIAGNPLFADRITVIKGKV 242
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
E++ELPEKADILISEPMGTLLVNERMLE+YVIARDRF+ P GKMFP+VGRIHMAPFSDE+
Sbjct: 243 EDIELPEKADILISEPMGTLLVNERMLESYVIARDRFMTPKGKMFPTVGRIHMAPFSDEF 302
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
LF+E+ANKA+FWQQQNYYGVDLTPLYGSA GYFSQPVVDAFDPRLLVA + H+IDF +
Sbjct: 303 LFIEMANKAMFWQQQNYYGVDLTPLYGSAHQGYFSQPVVDAFDPRLLVASPMFHMIDFTQ 362
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE+ YEIDIPLKF +S+ TR+HGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQ+RCV
Sbjct: 363 MKEEDFYEIDIPLKFTASMCTRMHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQIRCV 422
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQP+YVMAGQEITG+L +IAHSAQSYTI LTLS KMWGPGA QGGILQ+S+CK DLKEP
Sbjct: 423 LSQPIYVMAGQEITGRLHLIAHSAQSYTIDLTLSAKMWGPGASQGGILQSSTCKFDLKEP 482
Query: 363 YYRMSQPQPYVLTQDQ--QPH-QLMHSQDIPIQADDLEEPELIQLQSQCSGAQL 413
YYRMSQPQ Y + Q+ QP +L QDI D+LEE EL+Q Q AQL
Sbjct: 483 YYRMSQPQAYPVAQEPPLQPQPELSTQQDIQTPNDELEE-ELLQQLPQNPSAQL 535
|
|
| UNIPROTKB|A2YPT7 CARM1 "Probable histone-arginine methyltransferase CARM1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
|---|
Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
Identities = 320/381 (83%), Positives = 354/381 (92%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG + GS KSKFD K+E SSAKMYFHYYGQLLHQQNMLQD+VRTGTYYAAV+ENR+DF
Sbjct: 132 LENGLIIGS-KSKFDTKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDF 190
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGA+HVYAVEASEMAE+A++LI+GNPSLG+RITVIKGKV
Sbjct: 191 EGRVVVDVGAGSGILSLFAAQAGARHVYAVEASEMAEHAQRLISGNPSLGQRITVIKGKV 250
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
EEVELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+ GRIHMAPFSDEY
Sbjct: 251 EEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEY 310
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
L+VE+ANKALFWQQ N++GVDLTPL+GSAF GYFSQPVVDAFDPRLLV+P H +DF
Sbjct: 311 LYVEMANKALFWQQHNFFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVSPPTFHTLDFTT 370
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE LYEIDIPL F++SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC+
Sbjct: 371 MKEEELYEIDIPLNFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCI 430
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQPLYVMAGQEITG+L ++AHSAQSYTIYLT+S KMWG GA+QGGILQTS+ KL+LKEP
Sbjct: 431 LSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEP 490
Query: 363 YYRMSQPQPYVLTQDQQPHQL 383
YYR+SQPQPYV+ QDQQ QL
Sbjct: 491 YYRLSQPQPYVMQQDQQQQQL 511
|
|
| UNIPROTKB|Q7XI75 CARM1 "Probable histone-arginine methyltransferase CARM1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
Identities = 320/381 (83%), Positives = 354/381 (92%)
Query: 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADF 62
L NG + GS KSKFD K+E SSAKMYFHYYGQLLHQQNMLQD+VRTGTYYAAV+ENR+DF
Sbjct: 132 LENGLIIGS-KSKFDTKIEASSAKMYFHYYGQLLHQQNMLQDFVRTGTYYAAVMENRSDF 190
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKV 122
GRVVVDVGAGSGILSLFAAQAGA+HVYAVEASEMAE+A++LI+GNPSLG+RITVIKGKV
Sbjct: 191 EGRVVVDVGAGSGILSLFAAQAGARHVYAVEASEMAEHAQRLISGNPSLGQRITVIKGKV 250
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182
EEVELPEKADILISEPMGTLLVNERMLE+YVIARDRFLVP GKMFP+ GRIHMAPFSDEY
Sbjct: 251 EEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEY 310
Query: 183 LFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242
L+VE+ANKALFWQQ N++GVDLTPL+GSAF GYFSQPVVDAFDPRLLV+P H +DF
Sbjct: 311 LYVEMANKALFWQQHNFFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVSPPTFHTLDFTT 370
Query: 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCV 302
KEE LYEIDIPL F++SVGTRVHGLACWFDVLF+GSTVQRWLTTAPG+PTTHWYQLRC+
Sbjct: 371 MKEEELYEIDIPLNFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCI 430
Query: 303 LSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEP 362
LSQPLYVMAGQEITG+L ++AHSAQSYTIYLT+S KMWG GA+QGGILQTS+ KL+LKEP
Sbjct: 431 LSQPLYVMAGQEITGRLHLVAHSAQSYTIYLTMSAKMWGEGAEQGGILQTSTAKLELKEP 490
Query: 363 YYRMSQPQPYVLTQDQQPHQL 383
YYR+SQPQPYV+ QDQQ QL
Sbjct: 491 YYRLSQPQPYVMQQDQQQQQL 511
|
|
| ZFIN|ZDB-GENE-040724-77 carm1 "coactivator-associated arginine methyltransferase 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 192/359 (53%), Positives = 249/359 (69%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
+S F D+ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF +VV+DVG
Sbjct: 108 RSVFSDRTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKVVLDVGC 167
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FAAQAGA+ VYAVEAS MA++A L+ N L ER+ VI GKVEEV LPE+ D
Sbjct: 168 GSGILSFFAAQAGARKVYAVEASTMAQHAEVLVNSN-RLSERVVVIPGKVEEVSLPEQVD 226
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
I+ISEPMG +L NERMLE+Y+ A+ +FL P GKMFP++G +H+APF+DE L++E KA
Sbjct: 227 IIISEPMGYMLFNERMLESYLHAK-KFLKPSGKMFPTIGDVHLAPFTDEQLYMEQFTKAN 285
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q +++GVDL+ L G+A YF QP+VD FD R+L+A +V + ++F + KEE+LY+I+
Sbjct: 286 FWYQPSFHGVDLSALRGAAVDEYFRQPIVDTFDIRILMAKSVKYTVNFLEAKEEDLYKIE 345
Query: 253 IPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAG 312
IP KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+L PL+ AG
Sbjct: 346 IPFKFHMMHSGLVHGLAFWFDVAFIGSVMTVWLSTAPTEPLTHWYQVRCLLQSPLFAKAG 405
Query: 313 QEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
++G +IA+ QSY I + V DQ G SS LDLK P++R + P
Sbjct: 406 DTMSGTALLIANKRQSYDISIVAQV-------DQTG--SKSSNLLDLKNPFFRYTGTTP 455
|
|
| UNIPROTKB|B3M1E1 Art4 "Histone-arginine methyltransferase CARMER" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 194/378 (51%), Positives = 256/378 (67%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 129 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGA 188
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 189 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 247
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKMFP+ G +H+APFSDE L+ E NKA
Sbjct: 248 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMFPTHGDLHIAPFSDESLYSEQYNKAN 306
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 307 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHVID 366
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F G+T WL+T+P AP THWYQ+RC+L P+++
Sbjct: 367 IPLEFHILQTGI-CHGLAFWFDVEFSGTTQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 425
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS-QP- 369
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R + P
Sbjct: 426 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFRYTGAPV 476
Query: 370 QPYVLTQDQQPHQLMHSQ 387
Q T Q P + +Q
Sbjct: 477 QAPPGTSTQSPSEQYWTQ 494
|
|
| UNIPROTKB|B4NKI9 Art4 "Histone-arginine methyltransferase CARMER" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 192/378 (50%), Positives = 257/378 (67%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++++DVGA
Sbjct: 131 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNAIDFQDKIILDVGA 190
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 191 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 249
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 250 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDESLYSEQYNKAN 308
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L++ID
Sbjct: 309 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHKID 368
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++
Sbjct: 369 IPLQFHILQTGI-CHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 427
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS-QP- 369
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R + P
Sbjct: 428 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFRYTGAPV 478
Query: 370 QPYVLTQDQQPHQLMHSQ 387
Q T Q P + +Q
Sbjct: 479 QAPPGTSTQSPSEQYWTQ 496
|
|
| UNIPROTKB|B4KA23 Art4 "Histone-arginine methyltransferase CARMER" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 194/378 (51%), Positives = 256/378 (67%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF +VV+DVGA
Sbjct: 137 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNAIDFQDKVVLDVGA 196
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 197 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 255
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 256 VIISEPMGYMLYNERMLETYLHAR-KWLKPHGKMYPTHGDLHIAPFSDESLYSEQYNKAN 314
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 315 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHVID 374
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++
Sbjct: 375 IPLEFHILQTGI-CHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 433
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS-QP- 369
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R + P
Sbjct: 434 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFRYTGAPV 484
Query: 370 QPYVLTQDQQPHQLMHSQ 387
Q T Q P + +Q
Sbjct: 485 QAPPGTNTQSPSEQYWTQ 502
|
|
| UNIPROTKB|B4GZ20 Art4 "Histone-arginine methyltransferase CARMER" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 193/378 (51%), Positives = 256/378 (67%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 129 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNAVDFQDKIVLDVGA 188
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 189 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 247
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSDE L+ E NKA
Sbjct: 248 VIISEPMGYMLYNERMLETYLHAR-KWLKPNGKMYPTHGDLHIAPFSDESLYSEQYNKAN 306
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE++L+ ID
Sbjct: 307 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKEDDLHLID 366
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GS+ WL+T+P AP THWYQ+RC+L P+++
Sbjct: 367 IPLEFQILQTGI-CHGLAFWFDVEFSGSSQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 425
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS-QP- 369
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R + P
Sbjct: 426 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFRYTGAPV 476
Query: 370 QPYVLTQDQQPHQLMHSQ 387
Q T Q P + +Q
Sbjct: 477 QAPPGTSTQSPSEQYWTQ 494
|
|
| UNIPROTKB|B4JXV2 Art4 "Histone-arginine methyltransferase CARMER" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 193/378 (51%), Positives = 255/378 (67%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
KS F + E SSA YF +YG L QQNM+QDYVRT TY A++ N DF ++V+DVGA
Sbjct: 138 KSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTSTYQRAILGNSIDFQDKIVLDVGA 197
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FA QAGA VYA+EAS MA+YA++L+ N ++ +I+VI GK+EE+ELPEK D
Sbjct: 198 GSGILSFFAVQAGAAKVYAIEASNMAQYAQQLVESN-NVQHKISVIPGKIEEIELPEKVD 256
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
++ISEPMG +L NERMLETY+ AR ++L P GKM+P+ G +H+APFSD+ L+ E NKA
Sbjct: 257 VIISEPMGYMLYNERMLETYLHAR-KWLKPQGKMYPTHGDLHIAPFSDDSLYSEQYNKAN 315
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q ++GVDLT L+ YF QP+VD FD R+ +A +V HV DF KE +L+ ID
Sbjct: 316 FWYQSAFHGVDLTTLHKEGMKEYFRQPIVDTFDIRICMAKSVRHVCDFLNDKENDLHLID 375
Query: 253 IPLKF-ISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
IPL+F I G HGLA WFDV F GST WL+T+P AP THWYQ+RC+L P+++
Sbjct: 376 IPLEFHILQTGI-CHGLAFWFDVEFSGSTQNVWLSTSPTAPLTHWYQVRCLLPMPIFIKQ 434
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMS-QP- 369
GQ +TG++ + A+ QSY + + L ++ G L +SS LDLK PY+R + P
Sbjct: 435 GQTLTGRVLLEANRRQSYDVTIDLHIE---------GTLISSSNTLDLKNPYFRYTGAPV 485
Query: 370 QPYVLTQDQQPHQLMHSQ 387
Q T Q P + +Q
Sbjct: 486 QAPPGTNTQSPSEQYWTQ 503
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A2YPT7 | CARM1_ORYSI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.8440 | 0.8961 | 0.7026 | N/A | no |
| Q29B63 | CARM1_DROPS | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5240 | 0.8260 | 0.6440 | yes | no |
| Q9VH48 | CARM1_DROME | 2, ., 1, ., 1, ., 1, 2, 5 | 0.5254 | 0.8236 | 0.6433 | yes | no |
| Q7XI75 | CARM1_ORYSJ | 2, ., 1, ., 1, ., 1, 2, 5 | 0.8440 | 0.8961 | 0.7026 | yes | no |
| A3KPF2 | ANM14_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.8175 | 0.9734 | 0.7632 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 414 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 8e-12 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 7e-10 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-09 | |
| pfam05185 | 445 | pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera | 8e-09 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 3e-08 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 1e-07 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 6e-07 | |
| TIGR00755 | 253 | TIGR00755, ksgA, dimethyladenosine transferase | 8e-07 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 1e-06 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 1e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 3e-06 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 4e-06 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 4e-06 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 9e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-05 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 2e-05 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 3e-05 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 5e-05 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 6e-05 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 7e-05 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 1e-04 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-04 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 2e-04 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 2e-04 | |
| TIGR00478 | 228 | TIGR00478, tly, hemolysin TlyA family protein | 3e-04 | |
| COG0030 | 259 | COG0030, KsgA, Dimethyladenosine transferase (rRNA | 5e-04 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 0.001 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 0.002 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 0.003 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 0.003 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125
V+D+G G+G L+L A V V+ S E ARK A L + + V+KG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEEL 59
Query: 126 EL--PEKADILISEPMGTLLV 144
E D++IS+P LV
Sbjct: 60 PPEADESFDVIISDPPLHHLV 80
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 7e-10
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 37 HQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS- 95
+ ++L+D R + +A I A+ D+GAGSGILS+ AA A A+ V A+E
Sbjct: 10 YHLDLLRDVERLAVFTSA-IAEVAE---DTFADLGAGSGILSVVAAHA-AERVIAIEKDP 64
Query: 96 EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNER 147
+ A A + + V+ G + + E AD++I E + T L+ E+
Sbjct: 65 KRARLAEENLHVPGD--VNWEVVVGDARDYDF-ENADVVICEMLDTALIEEK 113
|
Length = 252 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 5e-09
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121
G V+D+G G+G L++ A+ V V+ S EM E AR+ +LG RIT ++G
Sbjct: 2 GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK--LALGPRITFVQGD 59
Query: 122 V-EEVELPEKADILIS 136
+ ++L E D +
Sbjct: 60 APDALDLLEGFDAVFI 75
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 75/282 (26%), Positives = 115/282 (40%), Gaps = 54/282 (19%)
Query: 55 VIENRADFIGRVVVDVGAGSGIL---SLFAAQ-AGAK-HVYAVEASEMA-EYARKLIAGN 108
V E + V++ VGAG G L +L AA+ G K +YAVE + A +K +
Sbjct: 178 VPEKKKTSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIYAVEKNPNAVVTLQKRVN-F 236
Query: 109 PSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168
G+++T+I + E + PEKADIL+SE +G+ NE E + RFL P G P
Sbjct: 237 EEWGDKVTIISSDMREWKGPEKADILVSELLGSFGDNELSPEC-LDGAQRFLKPDGISIP 295
Query: 169 SVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRL 228
++AP S L+ ++ + + F P V
Sbjct: 296 QSYTSYLAPISSPKLYQKV-------KSMS-------------DPKAFETPYVVRLKSYY 335
Query: 229 LVAPAVSHVIDFK----KTKEENLYEIDIPLKFISSVGTRVHGLACWFD-VLFDG---ST 280
++ V F+ N E L+F +HG A +FD VL+ S
Sbjct: 336 KLSEEVQECWSFEHPNRDENSHN--ERYKTLEFKIKHDGVLHGFAGYFDAVLYKDVELSI 393
Query: 281 VQRWLTTAPGAPTTH------WYQLRCVLSQPLYVMAGQEIT 316
+ P TH W+ + L +P+YV GQE++
Sbjct: 394 L----------PNTHTPNMISWFPIFFPLKKPVYVKKGQELS 425
|
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SEMAEYARKLIAGNP 109
Y V R D G+ V+D+GAG+GIL++ AA GA V AV+ E E AR A
Sbjct: 33 YILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR---ANAE 89
Query: 110 SLGERITVIKGKVEEVELPEKADILISEP 138
L + + V + D +I P
Sbjct: 90 ELLGDVEFVVADVSDFRGK--FDTVIMNP 116
|
Length = 198 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 59 RADFIGRVVVDVGAGSGILSLFAAQAGAK-HVYAVE-ASEMAEYARKLIAGNPSLGERIT 116
GR++ D+GAG+G L L AQ K + VE E AE A++ +A NP L ERI
Sbjct: 41 PVPKKGRIL-DLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQ 98
Query: 117 VIKGKVEEVE---LPEKADILISEP 138
VI+ ++E + D++I P
Sbjct: 99 VIEADIKEFLKALVFASFDLIICNP 123
|
Length = 248 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 25 AKMYFHYYGQ--LLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAA 82
A ++ G+ LH+ N L+ Y V R D G V+DVG G GILS A
Sbjct: 24 ASRWWDPEGEFKPLHKINPLRL-----DYIREVARLRFDLPGLRVLDVGCGGGILSEPLA 78
Query: 83 QAGAKHVYAVEASEMA-EYARK 103
+ GA V ++ASE E A+
Sbjct: 79 RLGA-SVTGIDASEKPIEVAKL 99
|
Length = 243 |
| >gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 39 QNMLQD-YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-SE 96
QN L D V AA + G VV+++G G G L+ + AK V A+E
Sbjct: 9 QNFLIDESVIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDRR 62
Query: 97 MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL---------ISEPMGTLLVNER 147
+AE RKL SL E + +I+G +V+L E L IS P+ L+ +
Sbjct: 63 LAERLRKL----LSLYENLEIIEGDALKVDLNEFPKQLKVVSNLPYNISSPLIFKLLEKD 118
Query: 148 MLETYV 153
V
Sbjct: 119 KFRLAV 124
|
In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 63 IGRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASEMA-EYARKLIAGNPSLGERITVIKG 120
+G V+D+G G G+L A+ V V+ + A E AR +A N E V
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN--GLENGEVFWS 88
Query: 121 KV-EEVELPEKADILISEP------MGTLLVNERMLETYVIARDRFLVPMGKMF 167
+ VE P K D++IS P V +R + A L P G+++
Sbjct: 89 DLYSAVE-PGKFDLIISNPPFHAGKATDYDVAQRFIAG---AARH-LKPGGELW 137
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122
G V+++G G G L+ A+ AK VYA+E +AE+ R + +I+G
Sbjct: 30 GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAAG----NVEIIEGDA 84
Query: 123 EEVELPEKADILIS 136
+V+LPE + ++S
Sbjct: 85 LKVDLPE-FNKVVS 97
|
Length = 258 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK-HVYAVE-ASEMAEYARKLIAGNPSLGERITVIKGK 121
G V+D GAGSG L AA+AG V VE E A AR+ +A L R+ V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAG-LAPRVRVVVGD 59
Query: 122 VEEVEL--PEKADILISEP-----MGTLLVNERMLETYVIARDRFLVPMGKM 166
E+ D+++ P G N + + ++ A R L P G +
Sbjct: 60 ARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVL 111
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125
++D+G G+G + A+AG V V+ S E E A++ + G ++ + ++
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLR---DKGPKVRFVVADARDL 57
Query: 126 ELPE-KADILISEPMGTLLVNERMLE 150
E D++I + ++ + L
Sbjct: 58 PFEEGSFDLVICAGLSLDYLSPKQLR 83
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA 98
G V+DVG GSGIL++ A + GAK V V+ +A
Sbjct: 161 GETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVA 195
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-06
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA 98
+ G+ V+DVG GSGIL++ AA+ GAK V AV+ A
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA 154
|
Length = 250 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-06
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 68 VDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126
+DVG G+G+L+ A+ G V V+ S EM ARK + G E++
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR--------APRKFVVGDAEDLP 52
Query: 127 LPEKA-DILIS 136
P+++ D+++S
Sbjct: 53 FPDESFDVVVS 63
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-06
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 13/107 (12%)
Query: 41 MLQDYV-----RTGTYY---AAVIENRAD-FIGRVVVDVGAGSGILSLFAAQAGAK--HV 89
+DY+ RT Y A I R G V++ G GSG L+ + A+A HV
Sbjct: 63 TPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHV 122
Query: 90 YAVEA-SEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135
E + A+ AR+ ++ LG+R+T+ G V E E D +
Sbjct: 123 TTYEIREDFAKTARENLS-EFGLGDRVTLKLGDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 64 GRVVVDVGAGSGILSLFAAQ--AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG 120
G V+D+G G+G L+ A+ V ++ SE E A++ E + I+G
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY--ENVEFIQG 61
Query: 121 KVEEVEL----PEKADILIS 136
+EE+ D++IS
Sbjct: 62 DIEELPQLQLEDNSFDVVIS 81
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
GR V+D+ GSG L++ AA AGA V AV+ S A AR G + V +G
Sbjct: 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA---GVDVDVRRGDW 93
Query: 123 EEVELPEKADILISEP 138
D+++S P
Sbjct: 94 ARAVEFRPFDVVVSNP 109
|
Length = 223 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-05
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 66 VVVDVGAGSGILSLFAAQAGAK-HVYAVEAS-EMAEYARKLIAGNP 109
VV+DVGA G SL+ A+ GA+ V A E + E + + N
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKH-VYAVEASEMA-EYARKLIAGNPSLGERITVIKGK 121
+ ++D+G GSG +++ A+ G V AV+ S A AR+ N R+ V++
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN--GLVRVLVVQSD 168
Query: 122 VEEVELPEKADILISEP 138
+ E L K D+++S P
Sbjct: 169 LFE-PLRGKFDLIVSNP 184
|
Length = 280 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 64 GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGK 121
G VVVD+ AG G S+ A+ AK VYAVE + A +Y ++ I N + I+ I G
Sbjct: 101 GEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLN-KVEGVISPILGD 159
Query: 122 VEEVELPEKADILIS 136
V +V L AD +I
Sbjct: 160 VRDVILEGVADRVIM 174
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVE 93
D G+VV+D+G+ +G + Q GAKHVYAV+
Sbjct: 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
G+ V+DVG GSGIL++ AA+ GAK V V+ A E AR+ N + + +
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLL 221
Query: 123 EEVELPEKADILI 135
EV D+++
Sbjct: 222 LEVPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 54 AVIENRADFIGRVVVDVGAGSGILSL-FAAQAGAKHVYAVEASEMA-EYARKLIAGNPSL 111
+E V+D+G GSG ++L A + V AV+ S A AR+ L
Sbjct: 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG--L 156
Query: 112 GERITVIKGKVEEVELPEKADILISEP 138
G R+ ++G E + D+++S P
Sbjct: 157 GARVEFLQGDWFEPLPGGRFDLIVSNP 183
|
Length = 275 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASEMAEYARKLIAGN-PSLG-ERITVIKG 120
G + D+GAG+G +++ A AG V A+E E A +LI N G + + V++G
Sbjct: 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE---ALELIERNAARFGVDNLEVVEG 91
Query: 121 KVEEV 125
E
Sbjct: 92 DAPEA 96
|
Length = 187 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKG 120
G V+D+ AG G S+ A+ G VYA++ + A EY ++ I N + R+ I G
Sbjct: 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLN-KVEGRVEPILG 245
Query: 121 KVEEV-ELPEKADILISEPMGTLLVNERMLET 151
EV AD +I MG L
Sbjct: 246 DAREVAPELGVADRII---MGLPKSAHEFLPL 274
|
Length = 341 |
| >gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKL 104
D ++V+DVG+ +G + A Q GAK VY V+ + A KL
Sbjct: 73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN-QLAEKL 115
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479) [Unknown function, General]. Length = 228 |
| >gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 32 YGQ-LLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVY 90
GQ L +N++ V A + G V+++G G G L+ + A+ V
Sbjct: 8 LGQNFLIDKNVIDKIVEA----ANISP------GDNVLEIGPGLGALTEPLLERAAR-VT 56
Query: 91 AVEA-SEMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129
A+E +AE ++ + + +TVI G + + P
Sbjct: 57 AIEIDRRLAEVLKER----FAPYDNLTVINGDALKFDFPS 92
|
Length = 259 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITV 117
D + V+DVG GSGILS+ A + GA V ++ +A E ARK N L +
Sbjct: 155 DLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK----NAELNQVSDR 210
Query: 118 IKGKVEEVELP--EKADILI 135
++ K+ +E P KAD+++
Sbjct: 211 LQVKLIYLEQPIEGKADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 62 FIGRVVVDVGAGSGILSLFAA---QAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVI 118
G +++D+G G+G +++ A+ K VYAV+ E A + A + I +I
Sbjct: 39 RKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97
Query: 119 KGKVEEV--ELPEKAD 132
KG+ E+ + EK D
Sbjct: 98 KGEAPEILFTINEKFD 113
|
Length = 198 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 60 ADFIGRVVVDVGAGSGILSL-FAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITV 117
D G+V+ D+G G G+L L A ++ + V+ + A E ARK +A N E V
Sbjct: 156 PDLGGKVL-DLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--GVENTEV 212
Query: 118 IKGKVEEVELPEKADILISEP-----MGTLL-VNERMLETYVIARDRFLVPMGKMF 167
+ E + K D++IS P + + + ++ A L P G+++
Sbjct: 213 WASNLYE-PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAA---AARH-LKPGGELW 263
|
Length = 300 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.003
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 64 GRVVVDVGAGSGILSLFAA-QAGAKHVYAVEASEMA-----EYARKLIAGNPSLGERITV 117
G V+ D+GAG+G +++ AA VYA+E + A R+ N I +
Sbjct: 20 GDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSN------IVI 73
Query: 118 IKGKVEEV--ELPEKADILI 135
++G E +L D +
Sbjct: 74 VEGDAPEAPEDLLPDPDAVF 93
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 414 | |||
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.97 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.95 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.84 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.7 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.67 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.6 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.58 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.57 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.57 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.57 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.56 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.53 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.53 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.53 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.53 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.52 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.52 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.52 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.51 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.51 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.51 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.5 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.48 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.48 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.47 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.45 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.43 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.42 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.42 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.41 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.4 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.4 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.4 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.4 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.37 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.37 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.37 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.36 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.35 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.35 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.35 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.35 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.33 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.33 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.33 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.33 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.32 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.32 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.31 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.3 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.3 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.3 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.3 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.29 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.28 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.28 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.28 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.28 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.27 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.26 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.26 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.26 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.25 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.25 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.25 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.25 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.24 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.24 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.23 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.23 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.23 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.23 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.23 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.22 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.22 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.22 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.22 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.22 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.21 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.21 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.2 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.19 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.19 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.19 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.18 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.17 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.17 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.17 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.16 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.16 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.14 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.14 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.14 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.14 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.13 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.13 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.13 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.12 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.12 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.11 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.11 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.11 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.11 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.11 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.11 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.1 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.1 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.1 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.09 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.09 | |
| PLN02476 | 278 | O-methyltransferase | 99.07 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.07 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.06 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.05 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.04 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.03 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.02 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.01 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.0 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.99 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.97 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.97 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.97 | |
| PLN02366 | 308 | spermidine synthase | 98.97 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.96 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.95 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.94 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.93 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.93 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.93 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.93 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.92 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.91 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.89 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.88 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.87 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.87 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.82 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.82 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.81 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.81 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.8 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.8 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.77 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.77 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.75 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.74 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.74 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.73 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.73 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.72 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.69 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.69 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.68 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.68 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.65 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.65 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.65 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.63 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.62 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.62 | |
| PLN02823 | 336 | spermine synthase | 98.6 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.59 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.59 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.55 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.53 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.52 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.51 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.48 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.47 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.46 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.43 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.42 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.42 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.42 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.41 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.4 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.39 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.38 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.35 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.33 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.32 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.29 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.27 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.27 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.26 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.25 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.24 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.23 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.2 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.19 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.18 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.12 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.11 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.07 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.04 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.04 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.04 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.02 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.99 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.98 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.96 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.94 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.94 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.92 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.91 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.91 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.87 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.87 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.79 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.78 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.76 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.75 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.74 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.73 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.7 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.7 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.69 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.67 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.65 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.62 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.55 | |
| PHA01634 | 156 | hypothetical protein | 97.46 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.39 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.25 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.23 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.21 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.2 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.16 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.13 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.11 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.09 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.06 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.89 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.87 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.8 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.79 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.79 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.77 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.77 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.71 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.59 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.55 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.55 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.5 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.2 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.12 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 95.96 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.93 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.81 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.77 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.74 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.62 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.51 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.49 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.47 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.37 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.34 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.29 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.07 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.06 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.89 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 94.44 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.25 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.2 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.2 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.19 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.08 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.94 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.75 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.71 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.56 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.53 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.5 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 93.24 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.1 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.07 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.11 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.07 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.99 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.73 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 91.47 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 91.28 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 91.01 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.82 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 90.76 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 90.57 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.44 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.23 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.22 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 90.2 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 90.18 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 89.9 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.73 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 89.72 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 89.65 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 89.57 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 89.48 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 89.39 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.95 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 88.82 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 88.82 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 88.77 | |
| PRK13699 | 227 | putative methylase; Provisional | 88.55 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 88.42 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 87.97 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 87.45 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 87.34 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.31 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.29 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 87.21 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 86.9 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 86.4 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 86.03 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 85.84 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 85.06 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 85.02 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.95 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 84.91 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 83.7 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 83.69 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 83.32 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 82.96 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 82.76 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 82.59 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 82.43 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 82.06 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 81.86 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 81.58 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 81.57 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.51 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 81.47 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 81.39 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 81.23 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 81.17 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 81.11 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 80.94 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 80.59 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 80.54 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 80.06 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.03 |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-95 Score=681.74 Aligned_cols=398 Identities=63% Similarity=0.970 Sum_probs=380.3
Q ss_pred CCCCccccCcCcccCCCCCCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHH
Q 015038 3 LPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAA 82 (414)
Q Consensus 3 ~~~~~v~~~~~~~y~~~~~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a 82 (414)
++|+.. ..++++|+.+++++++.+||++|+.+.++++|++|++|+++|.++|+++..++.++.|||+|||+|+++++++
T Consensus 118 l~n~~h-~~~kSvFs~rtEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAa 196 (517)
T KOG1500|consen 118 LENVKH-LRPKSVFSQRTEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAA 196 (517)
T ss_pred hcccee-ccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHH
Confidence 456663 5569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCC
Q 015038 83 QAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVP 162 (414)
Q Consensus 83 ~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp 162 (414)
++|+++||+||.|+|+++|++.++.|+ +.++|++|.|.++++++|+++|+|||++||+.+.+|++++.++.+. |+|||
T Consensus 197 qAGA~~vYAvEAS~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P 274 (517)
T KOG1500|consen 197 QAGAKKVYAVEASEMAQYARKLVASNN-LADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKP 274 (517)
T ss_pred HhCcceEEEEehhHHHHHHHHHHhcCC-ccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCC
Confidence 999999999999999999999999996 9999999999999999999999999999999999999999999987 99999
Q ss_pred CeEEEcccceeEEeeccchHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCccccCCceEEEEecCC
Q 015038 163 MGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK 242 (414)
Q Consensus 163 gG~lip~~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~~~~~~~~~df~~ 242 (414)
.|.++|+.+.+|++|+.++.+|.|..++++||.+.++||+|++++...+.++||++|+||+||+++|+++...+++||..
T Consensus 275 ~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv~h~~dF~~ 354 (517)
T KOG1500|consen 275 NGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSVFHVIDFLN 354 (517)
T ss_pred CCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccchHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccceeeeEEEEEeecceeeeEEEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEE
Q 015038 243 TKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMI 322 (414)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~ 322 (414)
++++|++++++|++|++...|.|||++||||+.|+|++..+|+||+|.+|.|||+|++|+|+.||.|++|++|+|++.+.
T Consensus 355 ~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ltGr~~Li 434 (517)
T KOG1500|consen 355 MKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQTLTGRLLLI 434 (517)
T ss_pred cccchheeecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEEEEEEEeCCCCCCCCceeeeeccccCCCCceeecCCCccccccCCcccc--ccccCCccCcccCCChhh
Q 015038 323 AHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQPYVLTQDQQPHQ--LMHSQDIPIQADDLEEPE 400 (414)
Q Consensus 323 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 400 (414)
+|++++|+|.+++++++| +++|+|++|||||||||+|+|+|+..+..-+|| -+-+|++++.+++++|..
T Consensus 435 A~~~QSY~i~i~l~~~~~---------l~sSs~~lDLK~Py~R~t~~~~~pp~~~~~~~pse~~wtq~~~~~~~~~~~~l 505 (517)
T KOG1500|consen 435 ANSRQSYDITITLSAKMT---------LQSSSNKLDLKNPYFRYTGPQVYPPPGEPPQSPSEQYWTQDITQGSDNLEEML 505 (517)
T ss_pred EccccceeEEEEEEeeee---------eecccceeccCCcceeccCCCCCCCCCCCCCCcchhhcccccccCCccHHHHh
Confidence 999999999999998765 478999999999999999999999998876665 455799999998887654
Q ss_pred hHhhccccccCcC
Q 015038 401 LIQLQSQCSGAQL 413 (414)
Q Consensus 401 ~~~~~~~~~~~~~ 413 (414)
.++.++|..+|+
T Consensus 506 -~~~~~~n~sa~i 517 (517)
T KOG1500|consen 506 -LGGLSQNGSAQI 517 (517)
T ss_pred -ccccCCCcccCC
Confidence 488899999886
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=468.07 Aligned_cols=310 Identities=38% Similarity=0.651 Sum_probs=292.0
Q ss_pred CCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHH
Q 015038 21 EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEY 100 (414)
Q Consensus 21 ~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~ 100 (414)
+..+.+.||..|.++.+|++||+|.+|+.+|+.++.++...+++++|||||||+|+|++++|++|+++|+|||.|.+++.
T Consensus 18 d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~ 97 (346)
T KOG1499|consen 18 DMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADF 97 (346)
T ss_pred ccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeecc
Q 015038 101 ARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFS 179 (414)
Q Consensus 101 a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~ 179 (414)
|++.+..|+ +.+.|+++.+.++++.+| +++|+|+|+|||+++..|+++..++.+..++|+|||.++|+.+++++++++
T Consensus 98 a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~ 176 (346)
T KOG1499|consen 98 ARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIE 176 (346)
T ss_pred HHHHHHhcC-ccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEecc
Confidence 999999998 999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCcccc-CCceEEEEecCCCCcccccceeeeEEEE
Q 015038 180 DEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLV-APAVSHVIDFKKTKEENLYEIDIPLKFI 258 (414)
Q Consensus 180 ~~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~-~~~~~~~~df~~~~~~~l~~~~~~~~~~ 258 (414)
+..++. .+..||. ++|||||++++..+. ..|+++.++++.|. +|+.+.++|+.++..+++. +..+|+++
T Consensus 177 d~~~~~---~~i~fW~--~Vygfdms~~~~~~~----~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~-F~s~f~l~ 246 (346)
T KOG1499|consen 177 DDSYKD---DKIGFWD--DVYGFDMSCIKKIAI----KEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS-FTSPFKLK 246 (346)
T ss_pred Cchhhh---hhcCccc--cccccchhhhhhhhh----cccceeccChhHhcccceeeEEeeeeeeecccee-eccceEEE
Confidence 998864 3578997 999999999998774 67888899988555 5899999999999999994 99999999
Q ss_pred EeecceeeeEEEEEEEEecCCc--cceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEE
Q 015038 259 SSVGTRVHGLACWFDVLFDGST--VQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLS 336 (414)
Q Consensus 259 ~~~~g~~hg~~~wFd~~f~~~~--~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~ 336 (414)
+.+++.+|||++|||+.|.+++ .++.+||+|.+|.|||+|++++|++|+.|++|+.|.|+|.+.+|.++.|++.++++
T Consensus 247 v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~~~~~R~l~~~l~ 326 (346)
T KOG1499|consen 247 VTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGEDITGTITMKPNKKNNRDLDISLS 326 (346)
T ss_pred EccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCceEEEEEEEeeCCCCCccceEEEE
Confidence 9999999999999999999988 88999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC
Q 015038 337 VKMWG 341 (414)
Q Consensus 337 ~~~~~ 341 (414)
+...+
T Consensus 327 ~~~~~ 331 (346)
T KOG1499|consen 327 LNFKG 331 (346)
T ss_pred EecCC
Confidence 86543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=368.77 Aligned_cols=270 Identities=38% Similarity=0.561 Sum_probs=212.3
Q ss_pred hhhhhhhhHHHHHHHHHhcCCC--------CCCEEEEECCCccHHHHHHHHcC-----CCeEEEEeChHHHHHH-HHHHH
Q 015038 41 MLQDYVRTGTYYAAVIENRADF--------IGRVVVDVGAGSGILSLFAAQAG-----AKHVYAVEASEMAEYA-RKLIA 106 (414)
Q Consensus 41 ml~d~~r~~~~~~ai~~~~~~~--------~~~~VLDiGcGtG~ls~~~a~~g-----~~~V~gvD~s~~~~~a-~~~~~ 106 (414)
+.+|.+++..|.+||.+.+.+. ++++|||||||+|.|+.++++++ +.+|+|||.|+++..+ ++++.
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~ 235 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN 235 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH
Confidence 3468888999998887765332 35789999999999999999886 5799999999866544 56667
Q ss_pred hCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHH
Q 015038 107 GNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVE 186 (414)
Q Consensus 107 ~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e 186 (414)
.|+ ++++|+++++|++++.+++++|+||||+||+++.+|.+++ .+.++.|+|||||++||+.+++|++|++++.+|.+
T Consensus 236 ~n~-w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE-~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~ 313 (448)
T PF05185_consen 236 ANG-WGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPE-CLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQE 313 (448)
T ss_dssp HTT-TTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHH-HHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHH
T ss_pred hcC-CCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHH-HHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHH
Confidence 786 9999999999999999999999999999999999997666 47899999999999999999999999999999887
Q ss_pred HHhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCC-ceEEEEecCCCCc--ccccceeeeEEEEEeec
Q 015038 187 IANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAP-AVSHVIDFKKTKE--ENLYEIDIPLKFISSVG 262 (414)
Q Consensus 187 ~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~-~~~~~~df~~~~~--~~l~~~~~~~~~~~~~~ 262 (414)
.... |. ...|..|+|..+.+. .|+.+ ..+++|++.+... ++...+..+++|++.++
T Consensus 314 ~~~~---~~-----------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~ 373 (448)
T PF05185_consen 314 VRNW---WN-----------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRD 373 (448)
T ss_dssp HHHH---HG-----------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSS
T ss_pred HHhh---cc-----------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCC
Confidence 5442 11 223577887776654 55556 5677766665542 34457788999999999
Q ss_pred ceeeeEEEEEEEEecCCccceeecCCCCC----CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEE
Q 015038 263 TRVHGLACWFDVLFDGSTVQRWLTTAPGA----PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVK 338 (414)
Q Consensus 263 g~~hg~~~wFd~~f~~~~~~~~lsT~P~~----~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~ 338 (414)
|.+|||++|||+.|+++ +.|||+|.. ++|||+|++|||++|+.|++|++|+++|+|+.++ ..|||||++.
T Consensus 374 g~vhGfagwFd~~Ly~~---V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~---~~vWYEW~v~ 447 (448)
T PF05185_consen 374 GVVHGFAGWFDAVLYGD---VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDD---RKVWYEWSVE 447 (448)
T ss_dssp EEEEEEEEEEEEEEECS---EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCS---TCEEEEEEEE
T ss_pred cEEEEEEEEEEEEeeCC---eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCC---CcEEEEEEEe
Confidence 99999999999999987 679999998 7999999999999999999999999999998864 5899999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=258.60 Aligned_cols=267 Identities=24% Similarity=0.318 Sum_probs=212.9
Q ss_pred hhhhhHHHHHHHHHhcCCC----C---CCEEEEECCCccHHHHHHHHc---C--CCeEEEEeChHHHHHHHHHHHhCCCC
Q 015038 44 DYVRTGTYYAAVIENRADF----I---GRVVVDVGAGSGILSLFAAQA---G--AKHVYAVEASEMAEYARKLIAGNPSL 111 (414)
Q Consensus 44 d~~r~~~~~~ai~~~~~~~----~---~~~VLDiGcGtG~ls~~~a~~---g--~~~V~gvD~s~~~~~a~~~~~~n~~l 111 (414)
|.++...|.+||...+.+. + -.+|+-+|+|.|.+.....++ - .-++|+||.++.+-...++..... +
T Consensus 341 D~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~-W 419 (649)
T KOG0822|consen 341 DPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC-W 419 (649)
T ss_pred cchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh-h
Confidence 5567777888887765433 1 236889999999987665554 1 127999999974433333333332 7
Q ss_pred CCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHhh
Q 015038 112 GERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANK 190 (414)
Q Consensus 112 ~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~~ 190 (414)
+++|+++.+|++++..| ++.|++|||++|++..+|-.++++ ..+.++|||+|+.||..++.|++|+....+|.+.+..
T Consensus 420 ~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECL-DG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~v~a~ 498 (649)
T KOG0822|consen 420 DNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECL-DGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQEVKAT 498 (649)
T ss_pred cCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHH-HHHHhhcCCCceEccchhhhhhcccccHHHHHHHHhc
Confidence 88999999999999987 899999999999999999887766 7888999999999999999999999999999876542
Q ss_pred hcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecceeeeEE
Q 015038 191 ALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLA 269 (414)
Q Consensus 191 ~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~~ 269 (414)
.. ...|..|+|.....- .|.+++.+++|........--+++...++|++.++|.+|||+
T Consensus 499 ~~--------------------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFa 558 (649)
T KOG0822|consen 499 ND--------------------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFA 558 (649)
T ss_pred CC--------------------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecc
Confidence 10 024788888877654 677788887776655432222456678999999999999999
Q ss_pred EEEEEEecCCccceeecCCCCC---CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEE
Q 015038 270 CWFDVLFDGSTVQRWLTTAPGA---PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVK 338 (414)
Q Consensus 270 ~wFd~~f~~~~~~~~lsT~P~~---~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~ 338 (414)
+|||..++.+. .||+.|.. .+++|++++||+++|+.|..|++|++++|++.++ ..|||||++.
T Consensus 559 GYFd~~LYkdI---~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~---~kVWYEW~v~ 624 (649)
T KOG0822|consen 559 GYFDAVLYKDI---FLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDS---TKVWYEWSVE 624 (649)
T ss_pred hhhhhhhhhee---eEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCC---ceeEEEEEee
Confidence 99999999764 59999975 3899999999999999999999999999999854 5999999985
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=233.60 Aligned_cols=265 Identities=22% Similarity=0.253 Sum_probs=193.8
Q ss_pred EEEEECCCccHHHHHHHHc----CCC-eEEEEeCh-HHHHHHHHHHHhCCCC-------CCcEEEEEcccccccCC----
Q 015038 66 VVVDVGAGSGILSLFAAQA----GAK-HVYAVEAS-EMAEYARKLIAGNPSL-------GERITVIKGKVEEVELP---- 128 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~----g~~-~V~gvD~s-~~~~~a~~~~~~n~~l-------~~~i~vi~~d~~~~~~~---- 128 (414)
+|+-+|+|.|.|...+.++ |.+ +|++||.| +.+...+.+...+..+ +++|++|..|++.+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999986555544 333 89999999 5444444433222124 45799999999998543
Q ss_pred --------CceeEEEEcCCccccCChhhHHHHHHHHHhccCC----Ce-------EEEcccceeEEeeccchHhHHHHHh
Q 015038 129 --------EKADILISEPMGTLLVNERMLETYVIARDRFLVP----MG-------KMFPSVGRIHMAPFSDEYLFVEIAN 189 (414)
Q Consensus 129 --------~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp----gG-------~lip~~~~~~~~~~~~~~l~~e~~~ 189 (414)
+++|+||||++|++..||-.++++ ..+.++||+ +| +.||..++.|++|+....+|.++..
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECL-DGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~ 861 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECL-EAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTE 861 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHH-HHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHH
Confidence 279999999999999999887766 667788875 55 5899999999999999999887543
Q ss_pred hhccccccccccccccccc-ccccccCCCCCeEeecCC-ccccCCceEEEEecCCCCcc----------------cccce
Q 015038 190 KALFWQQQNYYGVDLTPLY-GSAFHGYFSQPVVDAFDP-RLLVAPAVSHVIDFKKTKEE----------------NLYEI 251 (414)
Q Consensus 190 ~~~~w~~~~~~G~d~~~~~-~~~~~~~~~~p~v~~~~~-~~L~~~~~~~~~df~~~~~~----------------~l~~~ 251 (414)
.. ..|+-..+.. .......|..++|..+.. ..|..|+++++|...+.... .-+++
T Consensus 862 ~~-------~~gltvP~p~c~~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~R 934 (1072)
T PTZ00357 862 AA-------VKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLER 934 (1072)
T ss_pred hh-------hcccccCCccccccchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccce
Confidence 11 1111111100 000112356677766654 35667889998888654421 11356
Q ss_pred eeeEEEEEeecceeeeEEEEEEEEecCCcc--ceeecCCCCCC---CCCceeeEEeeC---CeeeecCCC---------E
Q 015038 252 DIPLKFISSVGTRVHGLACWFDVLFDGSTV--QRWLTTAPGAP---TTHWYQLRCVLS---QPLYVMAGQ---------E 314 (414)
Q Consensus 252 ~~~~~~~~~~~g~~hg~~~wFd~~f~~~~~--~~~lsT~P~~~---~thW~Q~~~~l~---~pl~v~~G~---------~ 314 (414)
...++|++..++++|||++||++.++++.+ .+.|||.|... +.+|++++|||+ ++..++.|+ .
T Consensus 935 ya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~ 1014 (1072)
T PTZ00357 935 AASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVA 1014 (1072)
T ss_pred eEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeecccccccccccee
Confidence 788999999999999999999999998742 46899999763 789999999999 777778887 7
Q ss_pred EEEEEEEEeCCCCceEEEEEEEEEE
Q 015038 315 ITGQLRMIAHSAQSYTIYLTLSVKM 339 (414)
Q Consensus 315 i~~~i~~~~~~~~~~~v~~~~~~~~ 339 (414)
|.+.+.++.+- ..+.|||+|++.-
T Consensus 1015 i~~~l~Rr~~~-~e~rVwYew~v~~ 1038 (1072)
T PTZ00357 1015 IRVQLDRRTSL-AEQRVWYEWSVTY 1038 (1072)
T ss_pred EEEeeeecccc-ccceEEEEEEEee
Confidence 88888888765 5679999999853
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=182.34 Aligned_cols=287 Identities=25% Similarity=0.288 Sum_probs=203.2
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCCCC-----C-EEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC
Q 015038 39 QNMLQDYVRTGTYYAAVIENRADFIG-----R-VVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL 111 (414)
Q Consensus 39 ~~ml~d~~r~~~~~~ai~~~~~~~~~-----~-~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l 111 (414)
-.||.|..|+..|+..|.......+. + .|||||+|||+|+++++++|+.+|+|+|.= +|++.|++...+|+ +
T Consensus 36 ~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng-~ 114 (636)
T KOG1501|consen 36 LDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG-M 114 (636)
T ss_pred HHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC-C
Confidence 47899999999999999887654332 2 589999999999999999999999999998 89999999999998 9
Q ss_pred CCcEEEEEcccccccCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHh
Q 015038 112 GERITVIKGKVEEVELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIAN 189 (414)
Q Consensus 112 ~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~ 189 (414)
.++|++|+....++... .+.|+++.+.+..-+..|+.+.++-++..+++++|...+|..+++|+.++++..++.-..
T Consensus 115 SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~~nd- 193 (636)
T KOG1501|consen 115 SDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCNLND- 193 (636)
T ss_pred ccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhhhhc-
Confidence 99999999988887654 359999999888888889889999999999999999999999999999999988764211
Q ss_pred hhccccccccccccccccc-----ccccccCCCCCeEee--cCCccccCCceEEEEecCCCCcccccceeeeEEEEEeec
Q 015038 190 KALFWQQQNYYGVDLTPLY-----GSAFHGYFSQPVVDA--FDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVG 262 (414)
Q Consensus 190 ~~~~w~~~~~~G~d~~~~~-----~~~~~~~~~~p~v~~--~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~ 262 (414)
..--..+...|+.+.+.. +.... +..-+++. -+.+.|+++-+++.+||...-.... ++..-+.+.+..+
T Consensus 194 -l~~~~~~ts~gv~~~p~~lesc~G~~sv--~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s-~~~~~r~~va~~S 269 (636)
T KOG1501|consen 194 -LRNNEAKTSDGVRLVPPGLESCFGIKSV--QDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNS-EIEELRPPVAVHS 269 (636)
T ss_pred -cccccccccCCcccCCCccccCCCchhH--HHHHHhhcchhhheeecCcceeEEeecchhhhcch-hhhhhcCcccccc
Confidence 110111233344333221 11110 00011121 2346788999999999984222111 2222345567789
Q ss_pred ceeeeEEEEEEEEecCCccceeecCCCC-------C--CCCCceeeEEeeCCeeeecCCCEEE-E--EEEEEeCCCCceE
Q 015038 263 TRVHGLACWFDVLFDGSTVQRWLTTAPG-------A--PTTHWYQLRCVLSQPLYVMAGQEIT-G--QLRMIAHSAQSYT 330 (414)
Q Consensus 263 g~~hg~~~wFd~~f~~~~~~~~lsT~P~-------~--~~thW~Q~~~~l~~pl~v~~G~~i~-~--~i~~~~~~~~~~~ 330 (414)
|++..+..|||+.|+.... ..+.-+|. + ...||.|+..++++ ++|..+. + .+.+++.+ ..+.
T Consensus 270 g~~~~~l~wwdi~mD~~g~-~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~----~~~~~i~~~ss~~~v~~~H-~~l~ 343 (636)
T KOG1501|consen 270 GPLRSNLLWWDISMDQFGF-SFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE----KKGNRIHNVSSLMTVFSYH-LWLY 343 (636)
T ss_pred cchhheeeeeeeeeccCcc-eEEEecceecCCChHHHHHHHHHHHhcCCChh----hhcCceeeccceEEEeeee-eeeE
Confidence 9999999999999986432 22333442 2 15799998887764 3444432 1 23444555 4566
Q ss_pred EEEEEEE
Q 015038 331 IYLTLSV 337 (414)
Q Consensus 331 v~~~~~~ 337 (414)
+|.+..+
T Consensus 344 i~~~~h~ 350 (636)
T KOG1501|consen 344 IYRTDHY 350 (636)
T ss_pred Eeeeeee
Confidence 6666654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=131.49 Aligned_cols=107 Identities=29% Similarity=0.377 Sum_probs=88.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-ccccCCCceeEEEEcC-
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVELPEKADILISEP- 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~~~~~fDvIis~~- 138 (414)
|+.+|||||||+|.+++.+++. +..+|+|+|+| ++++.|++++...+ ..++++++++|+ ......++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 5789999999999999999993 44579999999 59999999996665 778999999999 5555567899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+.+........+++.+.+.|+|||+++++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33434443557888999999999999998764
|
... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-16 Score=143.38 Aligned_cols=117 Identities=23% Similarity=0.304 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
..+++++.......+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.|+++..+.+ ..+ ++++.+|+++++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LP 114 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCC
Confidence 446666666665568999999999999999999987 66689999999 59999999998765 444 999999999999
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++ ++||+|.+.. .+.+-...+..|++++|+|||||+++.-.
T Consensus 115 f~D~sFD~vt~~f---glrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 115 FPDNSFDAVTISF---GLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCccCEEEeee---hhhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 88 6899999844 44444458999999999999999876544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-15 Score=140.11 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=80.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+++.+.+.....++.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|+++....+ . .+|+++++|++++++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~-~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-L-QNIEFVQGDAEDLPF 112 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S
T ss_pred HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-C-CCeeEEEcCHHHhcC
Confidence 3344555555678889999999999999998876 3 3489999999 59999999998865 3 389999999999988
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+ ++||+|++....+.+.+ +...++++.|+|||||.+++-.
T Consensus 113 ~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEee
Confidence 6 78999998654444444 7788999999999999987543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-15 Score=136.78 Aligned_cols=104 Identities=27% Similarity=0.332 Sum_probs=91.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++++|||||||-|+|+..+|+.|+ .|+|+|++ ++++.|+.....++ + .+++....++++... ++||+|+|.-+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~g-v--~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESG-V--NIDYRQATVEDLASAGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcc-c--cccchhhhHHHHHhcCCCccEEEEhhH
Confidence 6899999999999999999999997 69999999 59999999998876 3 477888888888655 79999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..++.+ ++.+++++.+++||||.++++..+
T Consensus 134 lEHv~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 134 LEHVPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHccCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 888777 677999999999999999988765
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-15 Score=143.64 Aligned_cols=105 Identities=25% Similarity=0.297 Sum_probs=88.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++.|+ +|+|||++ ++++.|+++...++ ...++++++++++++..+ ++||+|++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4567999999999999999998876 69999999 59999998876554 446899999999987654 68999999777
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+++.+ ...++.++.++|||||.++++..
T Consensus 208 LeHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 208 IEHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HHhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 777766 67899999999999999987743
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=134.21 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHh--CCCCCCcEEEEEcccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAG--NPSLGERITVIKGKVEEV 125 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~ 125 (414)
+++.+.+.....++.+|||+|||+|.++..+++. +. .+|+|+|+| +|++.|+++... .. ...+++++++|++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~l 139 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDL 139 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccC
Confidence 4444444455567889999999999999988875 42 489999999 599999876531 11 335799999999998
Q ss_pred cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++ ++||+|++....+++.+ +..++.++.|.|||||.+++..
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCCCEeEEEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 876 58999999776666654 6888999999999999987654
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=128.96 Aligned_cols=104 Identities=29% Similarity=0.434 Sum_probs=85.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++++|||+|||+|.+++.+++.+.. +|+++|+|+ +++.|++++..|+ +.+ ++++.+|+.+...+++||+|+|||+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-cccccccccccccccceeEEEEccch
Confidence 6789999999999999999998665 799999995 8899999999997 666 99999999775556899999999986
Q ss_pred cccCC--hhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVN--ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~--e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.... ...+..++..+.++|||||.+++
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 54332 23478889999999999999865
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=125.23 Aligned_cols=106 Identities=30% Similarity=0.387 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCccHHHHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAA-QA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a-~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis 136 (414)
.++.+|||+|||+|.++..++ +. ...+++|+|+| +|++.|+++++.++ +. +++++++|+.+++ ++++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEEE
Confidence 357899999999999999999 44 34589999999 59999999998876 55 8999999999976 4479999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..+.+++.+ ...+++.+.++|+++|.+++....
T Consensus 80 ~~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 877665544 678889999999999999876544
|
... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=130.58 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=89.3
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++...++ + .+++++.+|+.++.++++||+|+
T Consensus 24 ~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcCCCcCEEE
Confidence 333445678999999999999999999876 79999999 58899999888765 4 45889999998877777899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+..+.+++. ...+..++..+.++|||||.+++
T Consensus 101 ~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 987766654 44578899999999999999643
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=130.27 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
...+++.++..+...++++|||+|||+|.++..+++. + ..+|+|+|+| .+++.|++++...+ + ++++++.+|+++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~ 107 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAME 107 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhc
Confidence 3445566667766667899999999999999999876 3 3489999999 59999999887664 4 579999999988
Q ss_pred ccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++.+ ++||+|++....+.+.+ ...++.++.++|+|||.+++.
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCCCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEE
Confidence 7655 68999998765555444 567889999999999999754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=130.51 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=86.7
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+|+ +++.++++...++ + ++.+..+|+....++++||+|
T Consensus 23 ~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~fD~I 98 (195)
T TIGR00477 23 REAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALNEDYDFI 98 (195)
T ss_pred HHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhccccCCCCEE
Confidence 3344445678999999999999999999886 699999995 8899988887765 4 377778888766666789999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++..+.+++.. .....+++.+.++|||||.+++
T Consensus 99 ~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 99 FSTVVFMFLQA-GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEecccccCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 99887766543 4577889999999999998653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=113.08 Aligned_cols=93 Identities=27% Similarity=0.424 Sum_probs=77.3
Q ss_pred EEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCC
Q 015038 68 VDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVN 145 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~ 145 (414)
||+|||+|..+..+++.+..+|+|+|++ ++++.++++.... ++.++.+|+++++++ ++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeec--
Confidence 8999999999999999966689999999 5899999886543 367999999999876 789999998777776
Q ss_pred hhhHHHHHHHHHhccCCCeEEEc
Q 015038 146 ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 146 e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.....+++++.|+|||||.+++
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3478999999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=134.10 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=87.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++....+ +.++++++++|+.++. .+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4567999999999999999999876 69999999 59999999988776 6678999999998864 347899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+++.+ +..++..+.++|||||.+++.
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 7776655 567889999999999999754
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=124.74 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=85.3
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
+.....++.++||+|||.|..++++|+.|. .|+|+|.|+ .++.+++.+...+ + .|+....|+.+..+++.||+|+
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-TTTEEEEE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhccccCCcCEEE
Confidence 344456788999999999999999999999 599999995 6788888777765 4 3999999999988888999999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|..+..++.. .....++..+...++|||++++
T Consensus 100 st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 100 STVVFMFLQR-ELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEE
Confidence 9877777764 4578899999999999999765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=124.88 Aligned_cols=99 Identities=21% Similarity=0.361 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++.+|||+|||+|.+++.++..+ ..+|+|+|.| .|++.++++++.++ +. +++++++|++++...++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~~~~~~~fD~I~s~~- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAEDFQHEEQFDVITSRA- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhhccccCCccEEEehh-
Confidence 458899999999999999988764 4589999999 59999999888875 53 5999999999875557999999975
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+ +..++..+.++|+|||.+++.
T Consensus 118 ---~~~---~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 ---LAS---LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ---hhC---HHHHHHHHHHhcCCCCEEEEE
Confidence 222 566778889999999999865
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=133.04 Aligned_cols=114 Identities=28% Similarity=0.356 Sum_probs=88.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...+|.+|||||||.|.+++.+++. |+ +|+||.+| +..+.|++.+...+ +.+++++..+|..+++ .+
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~--~~ 127 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLP--GK 127 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG-----S
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccC--CC
Confidence 45566677788999999999999999999998 76 79999999 58999999999887 8899999999998865 49
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||.|+|-.+..++. ......++..+.++|||||++++...
T Consensus 128 fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 128 FDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp -SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred CCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99999977776664 34478999999999999999987543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.3e-14 Score=136.86 Aligned_cols=109 Identities=29% Similarity=0.364 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+. ..++++|||+|||||+|++.+++.|+++|+|+|+++ .++.|++|+..|+ +.+++.+. ...+. .
T Consensus 149 ~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 149 RLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--Eeccc-c
Confidence 4444555555 357889999999999999999999999999999996 6699999999998 88878764 22222 2
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|++|..... +..++..+.++|+|||.++++
T Consensus 223 ~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANILADV------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEc
Confidence 379999999876544 456777888999999999865
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=136.27 Aligned_cols=113 Identities=20% Similarity=0.170 Sum_probs=89.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+...+...++++|||||||+|.++..+++.|+.+|+|+|+|+ ++..++......+ ...++.++.+++++++.+++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCCcCCc
Confidence 34445555678899999999999999999999988899999995 6655443322221 235799999999998777889
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+|..+.++..+ +..+++.+++.|+|||.++++
T Consensus 191 D~V~s~~vl~H~~d---p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 191 DTVFSMGVLYHRRS---PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CEEEECChhhccCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 99999766666544 678899999999999999875
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=132.32 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=100.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
.+.+.+.+...+|++|||||||.|.+++.+|+.-..+|+|+++| ++.+.+++++++.+ +.++++++..|.+++. ++
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~--e~ 137 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFE--EP 137 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEeccccccc--cc
Confidence 35667778888999999999999999999999843479999999 59999999999887 8899999999999875 45
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||-|+|-.|..++..+. ...++..+.++|+|||.++....
T Consensus 138 fDrIvSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 138 FDRIVSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred cceeeehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEEe
Confidence 99999988877776544 78899999999999999986543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=135.84 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=89.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++....+|+|||+| .+++.|+++...++ +.++++++.+|+.+++++ ++||+|++...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 5678999999999999999998633479999999 59999999888776 777899999999988765 68999999776
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.+ ...++.++.|+|||||.+++..
T Consensus 196 ~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 666655 5788899999999999998754
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.9e-14 Score=133.95 Aligned_cols=110 Identities=28% Similarity=0.305 Sum_probs=84.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..++.+.. .++++|||+|||||+|++.+++.|+++|+|+|+++ .++.|+.|++.|+ ....+..-..+..+....++
T Consensus 153 L~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 153 LEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-CchhhhcccccchhhcccCc
Confidence 34444443 48899999999999999999999999999999997 5599999999997 44333333334444333369
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+||+|.+... +..+...+.+.|||||.++.+-
T Consensus 230 ~DvIVANILA~v------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 230 FDVIVANILAEV------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred ccEEEehhhHHH------HHHHHHHHHHHcCCCceEEEEe
Confidence 999999875433 5677888899999999998653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=124.30 Aligned_cols=99 Identities=28% Similarity=0.359 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .|++.|+++++.++ +.+ ++++.+|+.++...++||+|+++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhhCCCCCCccEEEEccc-
Confidence 3789999999999999988874 45689999999 59999999999886 544 9999999998766668999999642
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. .++.+++.+.++|||||.+++..
T Consensus 122 ---~---~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 122 ---A---SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ---c---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 26788899999999999997553
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=119.59 Aligned_cols=135 Identities=30% Similarity=0.399 Sum_probs=114.3
Q ss_pred hhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcE
Q 015038 37 HQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERI 115 (414)
Q Consensus 37 ~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i 115 (414)
.|.+.|.|..|-..|..+|.+... ..+.|+|+|+|+|++.+|++ +++|+|||.++ .++.|.+++.-++ .+++
T Consensus 10 yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g--~~n~ 82 (252)
T COG4076 10 YHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPG--DVNW 82 (252)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCC--Ccce
Confidence 467889999999999999987653 68999999999999999998 88999999996 7799999986654 3689
Q ss_pred EEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccc
Q 015038 116 TVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180 (414)
Q Consensus 116 ~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~ 180 (414)
+++.+|+.++.+ +..|+|+|+.+...+..|.... +++++..+||-++.++|....+-+.|+..
T Consensus 83 evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF-ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc-cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999988 6899999999988888777544 55677789999999999987766666644
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=133.08 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++...+...++++|||||||+|.++..++..|+.+|+|+|+|+ |+..++....... ...++.++.+++++++...+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCCCCc
Confidence 44555666778999999999999999999988888899999995 7765433222111 235788999999888766789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+|..+.++..+ +..++.++++.|||||.+++..
T Consensus 190 D~V~s~gvL~H~~d---p~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 190 DTVFSMGVLYHRKS---PLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred CEEEEcchhhccCC---HHHHHHHHHHhcCCCCEEEEEE
Confidence 99999877777654 6778899999999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-14 Score=130.05 Aligned_cols=106 Identities=32% Similarity=0.402 Sum_probs=89.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC---CceeEEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP---EKADILI 135 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~~fDvIi 135 (414)
....++|||+|||+|.+++++|+. ...+|+|||++ ++++.|+++++.|+ +.++|+++++|+.++... .+||+|+
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCEEE
Confidence 344789999999999999999998 54689999999 59999999999997 999999999999988543 4699999
Q ss_pred EcCCccccCCh---------------hhHHHHHHHHHhccCCCeEEE
Q 015038 136 SEPMGTLLVNE---------------RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 136 s~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~li 167 (414)
|||+.+-.... ..++.+++.+.++|||||.+.
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 99985532221 227899999999999999985
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=114.21 Aligned_cols=105 Identities=30% Similarity=0.457 Sum_probs=85.2
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEcCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISEPM 139 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~~~ 139 (414)
|.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++..++ +.++++++.+|+.+.. . .++||+|+++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 468999999999999999999866899999995 7799999999886 7788999999998875 3 378999999998
Q ss_pred ccccCC-----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN-----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...... ......+++.+.++|||||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 653211 123568889999999999998754
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.7e-14 Score=129.65 Aligned_cols=102 Identities=27% Similarity=0.402 Sum_probs=83.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC----cEEEEEcccccccCCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE----RITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~----~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
|++|||+|||+|+++..+|+.|+ .|+|||++ .|++.|++....++.+.. ++++.+.++++.. ++||.|+|.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH
Confidence 47899999999999999999997 69999999 599999998666553333 4777777887754 5699999976
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.++..+ +..++..+.++|||||.++++.-
T Consensus 167 vleHV~d---p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVKD---PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHhC---HHHHHHHHHHHhCCCCceEeeeh
Confidence 6666544 78899999999999999987653
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.5e-13 Score=132.89 Aligned_cols=116 Identities=15% Similarity=0.183 Sum_probs=90.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCC--CcEEEEEcccccccCCC
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLG--ERITVIKGKVEEVELPE 129 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~--~~i~vi~~d~~~~~~~~ 129 (414)
.+++.+....+.+|||+|||+|.+++.+++.+ ..+|+++|.|+ +++.|+++++.|+ .. .+++++.+|+.+...++
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccCCCC
Confidence 35555554445699999999999999999874 45899999995 7899999998875 33 37899999986543346
Q ss_pred ceeEEEEcCCcccc--CChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLL--VNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|+|||+.+.. ........++..+.+.|+|||.+++..
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 89999999997643 233446788899999999999997663
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=130.68 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..++ + ++++...|+....++++||+|++..+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccccCCccEEEEcchh
Confidence 4566999999999999999999886 79999999 58899999988765 4 688888898877667899999998877
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+++. ......++..+.++|+|||.+++
T Consensus 195 ~~l~-~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 195 MFLN-RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 7664 34577899999999999999654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=127.75 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++. +..+|+|+|+| +|++.|++++..++ ...+++++.+|+.+++.+ .+|+|+++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDIRDIAIE-NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCChhhCCCC-CCCEEehh
Confidence 46789999999999999888772 33589999999 59999999998775 667899999999987654 59999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++.. .....+++.+.+.|||||.+++..
T Consensus 133 ~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 77777654 336788999999999999998765
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=117.62 Aligned_cols=104 Identities=14% Similarity=0.219 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++++|||+|||+|.++..+++.+. +|+++|+| .+++.+++++..++ . +++++.+|+.+.. .++||+|+++++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~-~~~fD~Vi~n~p 91 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV-RGKFDVILFNPP 91 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc-CCcccEEEECCC
Confidence 45667899999999999999999877 89999999 59999999988765 3 5899999987654 458999999987
Q ss_pred ccccCC------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.... ......+++.+.++|||||.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 654432 112567889999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=106.87 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=84.5
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCCCc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELPEK 130 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~~ 130 (414)
+...+...++.+|||+|||+|.++..+++. +..+|+++|+| .+++.+++++..++ + .+++++.+|+... ..+++
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCC
Confidence 444444456789999999999999999986 44689999999 58899999888764 4 3689998987653 22368
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|++.... .....+++.+.++|||||.+++..+
T Consensus 89 ~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 89 PDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9999985421 2256889999999999999987643
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=125.17 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=85.3
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++..+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. +++++.+|++++...++|
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCCCCCCc
Confidence 34455555678899999999999999998872 3479999999 588888652 378899999887545789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+|+.+.+++.+ ...++.++.+.|||||.+++..
T Consensus 91 D~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 91 DVVVSNAALQWVPE---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred eEEEEehhhhhCCC---HHHHHHHHHHhCCCCcEEEEEc
Confidence 99999988887765 5778899999999999998753
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=125.42 Aligned_cols=100 Identities=29% Similarity=0.414 Sum_probs=82.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.+++.+++.|+.+|+|+|+++ +++.|++++..|+ +..++.+..++.... .+++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~~-~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQP-IEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccccc-cCCCceEEEEecCH
Confidence 46789999999999999999999988999999995 8899999999887 777788887764332 24689999998643
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+..++..+.++|||||.++++
T Consensus 236 ~------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 236 E------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred H------HHHHHHHHHHHHcCCCcEEEEE
Confidence 2 2567888899999999999765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=116.90 Aligned_cols=116 Identities=21% Similarity=0.196 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
|...+...++...-.++||+|||.|.++..+|... .+++++|+|+ .++.|+++.... .+|+++++++.+..+++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT---SS
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCCCCC
Confidence 33334334555555789999999999999999874 5899999995 779999987653 46999999999987779
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|+..-++|++.+...+..++..+...|+|||.+++...
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999999888999998877789999999999999999987543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=123.08 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=83.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.+.+.+...++.+|||+|||+|.++..+++.|. +|+++|+| .|++.|+++.. .+.++.+|+++++++ ++|
T Consensus 33 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 33 ALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcE
Confidence 344444444568999999999999999988775 79999999 58888887632 246788999887765 589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+++...++..+ +..++.++.++|+|||.+++.
T Consensus 105 D~V~s~~~l~~~~d---~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 105 DLAWSNLAVQWCGN---LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred EEEEECchhhhcCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 99999876665544 678899999999999999865
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=123.62 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=86.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.++..+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .++.++.+|+.++..+++|
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~~~~f 94 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQPPQAL 94 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCCCCCc
Confidence 3445555567889999999999999998876 34589999999 5888888763 2478999999887656799
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++...+++.+ ...++..+.+.|||||.+++..
T Consensus 95 D~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWLPD---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhCCC---HHHHHHHHHHhcCCCcEEEEEC
Confidence 99999888777655 5678899999999999998753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=122.14 Aligned_cols=106 Identities=20% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||+|||+|.++..+++. ...+|+|+|+| +|++.|++++...+ ...+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVEIK-NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCCCC-CCCEEeee
Confidence 36679999999999999988875 24579999999 59999999987654 456799999999988765 68999988
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++.. .....+++.+.+.|||||.+++..
T Consensus 130 ~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cchhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 77776653 346788999999999999998764
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-12 Score=116.64 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHhCCCCCCc--EEEEEc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA------KHVYAVEAS-EMAEYARKLIAGNPSLGER--ITVIKG 120 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~------~~V~gvD~s-~~~~~a~~~~~~n~~l~~~--i~vi~~ 120 (414)
+.+.....+...++.+|||++||||-++..+.+. +. ++|+.+|+| +|+..++++..+.+ +... +.++.+
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEG 166 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeC
Confidence 4455556667778899999999999999998876 33 689999999 59999999987755 5544 999999
Q ss_pred ccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 121 KVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 121 d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
|+++++++ .+||...+ ...+.+-..++..+++++|+|||||++.
T Consensus 167 dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 99999987 68999886 3344444458899999999999999885
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-12 Score=123.51 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~ 130 (414)
..++..+...++.+|||||||+|..+..+++....+|+|+|+| .+++.|+++... .+++.++.+|+.+.+.+ ++
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCC
Confidence 4455556667888999999999999988887533479999999 588999887543 25799999999877665 68
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++....+++. ......+++.+.++|||||.+++..
T Consensus 118 FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 118 FDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred eEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999964444433 2247889999999999999998754
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=118.35 Aligned_cols=106 Identities=27% Similarity=0.257 Sum_probs=84.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++.+|||+|||+|.++..+++.++.+|+++|+| .+++.+++++..++ . +++++.+|+.+....++||+|+++++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhccCCCeeEEEECCC
Confidence 35678999999999999999999877789999999 58899999988765 3 58899999877544468999999976
Q ss_pred ccccCC------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVN------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...... ...+..++..+.++|||||++++.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 432111 112567788899999999999854
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=120.93 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=86.1
Q ss_pred CEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
++|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++...+ +.++++++.+|+.+.+.+++||+|++..+.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCCCCCCEeehHHHHHh
Confidence 479999999999999988863 4579999999 58899999988876 78899999999976655678999998766666
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+ ...++..+.++|||||.+++..
T Consensus 80 ~~~---~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 80 IKD---KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred CCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 644 6788999999999999998653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=106.37 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=75.4
Q ss_pred EEEECCCccHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC-
Q 015038 67 VVDVGAGSGILSLFAAQAG----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM- 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~- 139 (414)
|||+|||+|..+..+++.. ..+++|+|+| +|++.++++....+ . +++++++|+.+++.. ++||+|++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999863 2689999999 59999999987754 3 799999999998643 69999999433
Q ss_pred ccccCChhhHHHHHHHHHhccCCCe
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMG 164 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG 164 (414)
.++ .....+..+++.+.++|+|||
T Consensus 78 ~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 445 566678999999999999998
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-12 Score=120.99 Aligned_cols=94 Identities=34% Similarity=0.488 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||+|||+|.+++.+++.|+.+|+|+|+|+ +++.|++++..|+ +.+++.+..++. +||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~~-------~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGDL-------KADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCCC-------CcCEEEEcCcH
Confidence 46889999999999999999988887899999995 8899999999886 555565554432 79999997542
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+..++..+.++|||||.++++
T Consensus 190 ~------~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 190 N------PLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred H------HHHHHHHHHHHhcCCCcEEEEE
Confidence 2 2567788899999999999875
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=112.61 Aligned_cols=108 Identities=25% Similarity=0.273 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+...+...++.+|||+|||+|.+++.+++.+ ..+|+++|+| .+++.|++++..++ + .+++++.+|... ..+++
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~~~~ 97 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-ELPGK 97 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hcCcC
Confidence 334444555578899999999999999998874 3589999999 58899999988775 4 469999998753 34578
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|++..... .+..++..+.+.|+|||.+++.
T Consensus 98 ~D~v~~~~~~~------~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 98 ADAIFIGGSGG------NLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred CCEEEECCCcc------CHHHHHHHHHHhcCCCeEEEEE
Confidence 99999864321 2566788889999999999763
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-12 Score=115.00 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=87.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
......+...++.+|||+|||+|.+++.+++. + ..+|+++|++ .+++.|+++++.++ +.+++.++.+|+.+.. .
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhhhHhhc
Confidence 33345556678899999999999999998875 3 3589999999 59999999998876 5678999999997642 2
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||.|++.. . ...+..++..+.+.|||||.+++.
T Consensus 109 ~~~~D~V~~~~---~---~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGG---G---SEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECC---C---cccHHHHHHHHHHHcCCCcEEEEE
Confidence 36899999843 1 123677889999999999999754
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=120.85 Aligned_cols=105 Identities=26% Similarity=0.316 Sum_probs=86.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis 136 (414)
..++.+|||+|||+|..++.+++. |. .+|+|+|++ .+++.|+++....+ . .+++++.+|+++++++ +.||+|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEEEE
Confidence 457889999999999988877765 44 379999999 59999999888765 4 4799999999987765 58999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+...++..+ ...+++++.++|||||.+++..
T Consensus 153 ~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 877766554 5678899999999999998754
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=120.40 Aligned_cols=108 Identities=22% Similarity=0.241 Sum_probs=84.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+...+++||+|+++|+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 45799999999999999999863 3489999999 58899999999886 777899999998653323589999999873
Q ss_pred ccc------C----C------------hhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLL------V----N------------ERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l------~----~------------e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.-. . . -.....++..+.++|+|||.+++..+
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 210 0 0 01246778889999999999987654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-12 Score=129.92 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=88.6
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Ccee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fD 132 (414)
+.+.+...++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++... ...+++++.+|+.+.+++ ++||
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCCCCCEE
Confidence 44444445678999999999999998887633479999999 588999887653 446799999999887765 5799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|+|....+++.+ ...++.++.++|||||.+++..
T Consensus 335 ~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 335 VIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999776666655 6788999999999999998764
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=113.78 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+...+.......++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.+++++..++ +..++.++.+|+.+...
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCC
Confidence 33444444445567899999999999999999886 3689999999 58899999887654 55679999999988765
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++....+...+ +..++..+.++|+|||.+++.
T Consensus 118 ~~~~~D~I~~~~~l~~~~~---~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPD---IDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCCccEEEEecccccCCC---HHHHHHHHHHhccCCcEEEEE
Confidence 4 68999998655444433 678889999999999998754
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=119.57 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=90.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+++.+....+.+|||+|||.|.+++.+++.. ..+++.+|.|. .++.|++++..|+ .... .++..|+.+-. .++
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecccccc-ccc
Confidence 456677766666799999999999999999984 56899999995 6699999999986 4443 77777776533 359
Q ss_pred eeEEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|||||+.|-... ....+.++..+.+.|++||.+.+...
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999999884332 22245888999999999999865533
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=123.33 Aligned_cols=112 Identities=22% Similarity=0.225 Sum_probs=87.4
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+++.+......+|||+|||+|.++..+++.+ ..+|+++|+|+ +++.|+++++.|+ +. .+++.+|+.+. .+++||
T Consensus 188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccccc-cCCCcc
Confidence 3444443445689999999999999999874 34899999994 8899999999886 43 56777887653 357899
Q ss_pred EEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 133 ILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 133 vIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|+|+++.|.... ....+.++..+.++|||||.+++..
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 9999998775332 3456889999999999999997643
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=113.62 Aligned_cols=111 Identities=24% Similarity=0.194 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+.+.+...++.+|||+|||+|..+..+++. + ..+|+++|++ ++++.|++++..++ +.++++++.+|..+.
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccC
Confidence 334455666666667889999999999999888875 2 3489999999 58999999998876 666799999999764
Q ss_pred cC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 EL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+||+|++......+ ..++.+.|+|||++++.
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred CccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEE
Confidence 32 3689999986543322 23556889999998753
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=128.86 Aligned_cols=106 Identities=22% Similarity=0.367 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis 136 (414)
.++.+|||+|||+|.++..+++. +..+|+|+|+| .|++.|+++....+ .++.++.+|+.+++ + +++||+|++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 46789999999999998888775 44589999999 58999988765533 46889999998765 3 368999999
Q ss_pred cCCccccC----------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLV----------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~----------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+.+. +...+..+++++.+.|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 87665432 23457888999999999999998753
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=119.64 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=84.0
Q ss_pred CEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..++ +.++++++++|+.+...+++||+|+++|+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 689999999999999998863 4589999999 58899999999886 77789999999866433358999999986321
Q ss_pred cC----------------------ChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 143 LV----------------------NERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 143 l~----------------------~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.. +-.....++..+.++|+|||.+++..+
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 012246778899999999999987544
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=114.32 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=82.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-cccc--C-CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVE--L-PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~--~-~~~fDvIis 136 (414)
++.+|||+|||+|.++..+++. +..+|+|+|+| ++++.|++++..++ + .+++++++|+ +.+. + ++.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 5679999999999999998876 34579999999 59999999988775 4 5799999999 6654 3 368999998
Q ss_pred cCCccccCC-----hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVN-----ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+..+... ......+++.+.++|||||.+++..
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 654322111 1114678899999999999997653
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=118.31 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 48 TGTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 48 ~~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
++.+...+..... ..++.+|||+|||+|.+++.+++... .+|+|+|+| .+++.|++++..++ +.++++++.+|+.+
T Consensus 98 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 98 TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFE 176 (284)
T ss_pred cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhc
Confidence 3444444443322 22236899999999999999998743 589999999 58899999998876 66679999999876
Q ss_pred ccCCCceeEEEEcCCccccC----------C------------hhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 125 VELPEKADILISEPMGTLLV----------N------------ERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~----------~------------e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.....+||+|+|||+..-.. . ......++..+.++|+|||.+++..+.
T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 43224899999997632110 0 113567888899999999999866543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=111.19 Aligned_cols=114 Identities=23% Similarity=0.234 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.+...+.......++.+|||+|||+|.++..+++.+. .+++++|++ .+++.++++.. ...++.++.+|+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecchhcCC
Confidence 3444555555555788999999999999999998765 489999999 58888887764 2356899999998876
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+ ++||+|++....++.. .+..+++.+.++|+|||.+++..
T Consensus 102 ~~~~~~D~i~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 6899999865544433 37788999999999999998643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=117.15 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HH---HHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MA---EYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~---~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
+.+...+...+|++|||||||+|..+..++++|++.|+|+|.+. .. ..+++.+. ...++..+...+++++..
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg----~~~~~~~lplgvE~Lp~~ 180 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG----QDPPVFELPLGVEDLPNL 180 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC----CCccEEEcCcchhhcccc
Confidence 44566667789999999999999999999999999999999984 32 22333321 123455555567777656
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.||+|+|-.+.+|..+ +-..|..++..|+|||.+++.+.
T Consensus 181 ~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred CCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEe
Confidence 79999999777777655 67778889999999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=112.64 Aligned_cols=115 Identities=25% Similarity=0.299 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+++.+.+.....++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|+++... ...+++++.+|+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEecccccCCC
Confidence 44455566666778899999999999999988763 4589999999 488888887332 34679999999987665
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+ ++||+|++....+++.+ ...+++.+.++|||||.+++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED---PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhccCC---HHHHHHHHHHHhcCCcEEEEEec
Confidence 4 68999999777666655 67788999999999999987653
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=112.55 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=87.6
Q ss_pred HHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRA--DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~--~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
++..+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+| +|+..|++++..++ ..+++++..+|+.+..
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC-
Confidence 3344444443 45788999999999999999998866 79999999 59999999987765 5568999999998865
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++||+|++....+++. ...+..++..+.+++++++.+.+
T Consensus 118 -~~fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCcCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEE
Confidence 7899999865554443 33467788888898988776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=123.97 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=90.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc-----CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE-----LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~-----~~~~fDvI 134 (414)
.++++|||+|||+|.+++.++..|+.+|+++|+| .+++.|++++..|+ +. ++++++++|+.++- ..++||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3678999999999999998888788899999999 58899999999987 65 58999999998752 13589999
Q ss_pred EEcCCccccCCh-------hhHHHHHHHHHhccCCCeEEEcccceeEEe
Q 015038 135 ISEPMGTLLVNE-------RMLETYVIARDRFLVPMGKMFPSVGRIHMA 176 (414)
Q Consensus 135 is~~~~~~l~~e-------~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 176 (414)
+++|+... ... .....++..+.++|+|||.++.++++-++.
T Consensus 298 ilDPP~f~-~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 298 VMDPPKFV-ENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred EECCCCCC-CChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 99998532 222 124556667889999999999887765553
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=122.70 Aligned_cols=110 Identities=24% Similarity=0.238 Sum_probs=86.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.+...++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++... + .+++..+|..++ +++|
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D~~~l--~~~f 229 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQDYRDL--NGQF 229 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECchhhc--CCCC
Confidence 3445555566888999999999999999988633479999999 599999988742 2 488888888765 4689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.+++.. ..+..++..+.++|||||.+++..
T Consensus 230 D~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999777666533 336788999999999999998753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=111.64 Aligned_cols=108 Identities=22% Similarity=0.135 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+...++.+|||||||+|.++..+++... .+|+++|++ ++++.|++++..++ + ++++++.+|..+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCc
Confidence 334555666667889999999999999999988732 369999999 59999999998876 5 579999999976532
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+||+|++...... +...+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEE
Confidence 368999998643222 224456889999998764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=108.47 Aligned_cols=107 Identities=25% Similarity=0.364 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCc-EEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGER-ITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~-i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++++|||+|||+|.++..+++.+ .+|+|+|.| .+++.+++++..++ +.++ +.++.+|+.+...+.+||+|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccccCceEEEECCC
Confidence 567899999999999999999885 579999999 58899999988776 4433 8899998876444458999999876
Q ss_pred ccccC------------------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLV------------------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~------------------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..... ....+..+++++.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 43210 12235678899999999999887543
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-13 Score=107.72 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=60.5
Q ss_pred EEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---cCCCceeEEEEcCCccc
Q 015038 68 VDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---ELPEKADILISEPMGTL 142 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~~~~fDvIis~~~~~~ 142 (414)
||||||+|.++..+++. ...+++|+|+| .|++.|++++.... ..+...+..+..+. ..+++||+|++..+.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG--NDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999998887 44589999999 58888888887754 23344444443333 22359999999888888
Q ss_pred cCChhhHHHHHHHHHhccCCCeEE
Q 015038 143 LVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+ ..+..+++.+.++|||||++
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 7 33789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=107.95 Aligned_cols=95 Identities=24% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~fDvIis~~ 138 (414)
..++++|||||||+|.++..+++.|. +|+|+|+++ +++. .+ +.....+.... ..+++||+|+|..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~------~~~~~~~~~~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN------VVFDNFDAQDPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT------SEEEEEECHTHHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh------hhhhhhhhhhhhccccchhhHhhHH
Confidence 46788999999999999999999888 799999995 6655 11 22222222222 2347999999998
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+++.+ +..++..+.++|||||.+++...
T Consensus 87 ~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 87 VLEHLPD---PEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SGGGSSH---HHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HHhhccc---HHHHHHHHHHhcCCCCEEEEEEc
Confidence 8888774 78999999999999999987643
|
... |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=119.03 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
...++.......++.+|||+|||+|.+++.++..|+ +|+|+|++ .|+..|+++++..+ +.+ +.++.+|+.+++.+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSS 246 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCccc
Confidence 344555555556788999999999999998888776 69999999 59999999998876 554 89999999988764
Q ss_pred CceeEEEEcCCcccc---C---ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLL---V---NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l---~---~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++++.... . .+.....++..+.+.|||||.+++.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 689999999874321 1 1233578899999999999998643
|
This family is found exclusively in the Archaea. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=131.44 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=90.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc--CCCceeEEEEcC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
++++|||+|||+|.+++.+++.|+++|++||+| .+++.|++++..|+ +. ++++++++|+.++- ..++||+||++|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 578999999999999999999999899999999 58899999999997 65 68999999997752 246899999998
Q ss_pred CccccC--------ChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 139 MGTLLV--------NERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 139 ~~~~l~--------~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+...-. .......++..+.++|+|||.++++.+.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 843211 1233567788889999999999887654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=111.85 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++..+++.+. .+++++|++ .+++.+++... .++.++.+|+.+.+.+ ++||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 4457999999999999999998753 469999999 47777776532 3688999999987644 6899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.++..+ +..++..+.++|+|||.+++.
T Consensus 107 ~l~~~~~---~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 107 ALQWCDD---LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hhhhccC---HHHHHHHHHHHcCCCcEEEEE
Confidence 7776644 678899999999999999865
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=112.70 Aligned_cols=89 Identities=20% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++.+|||||||||.++..+++....+|+|+|+| +|++.|++. ...+++|+++++++ ++||+|++....
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~l 120 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFAL 120 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecChh
Confidence 467999999999999999988733479999999 599988753 13467899888765 689999997665
Q ss_pred cccCChhhHHHHHHHHHhccCCCe
Q 015038 141 TLLVNERMLETYVIARDRFLVPMG 164 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG 164 (414)
+++.+ ++.+++++.|+|||.+
T Consensus 121 ~~~~d---~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 121 HASDN---IEKVIAEFTRVSRKQV 141 (226)
T ss_pred hccCC---HHHHHHHHHHHhcCce
Confidence 55444 7889999999999954
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=109.49 Aligned_cols=117 Identities=16% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+..++++...+. ..++.+|||+|||+|.+++.++..++.+|+++|.+ +.++.|+++++.++ + .+++++++|+.+.-
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHH
Confidence 334444444432 24678999999999999997766677899999999 58899999998876 4 37999999997642
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
..++||+|+++|+.... ..+.++..+. .+|+|+|++++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~g----~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRKG----LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCCC----hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22469999999994322 2334444443 35899998887644
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=117.83 Aligned_cols=100 Identities=24% Similarity=0.229 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++... .+++++.+|+++++++ ++||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 35679999999999999888875 44689999999 588888887542 3578999999987765 6899999977
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+++.+ .+.+++++.++|||||.+++.
T Consensus 187 ~L~~~~d---~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 187 SIEYWPD---PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred hhhhCCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 6666554 467889999999999998653
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-11 Score=115.74 Aligned_cols=115 Identities=14% Similarity=0.082 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.....++.+|||||||+|.++..+++.. ..+++++|..++++.+++++...+ +.++++++.+|+.+...+ .+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG-VADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCC-ccceEEEEecCccCCCCC-CC
Confidence 334444444566899999999999999999874 358999999789999999998886 788999999999865554 47
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.|.. ++.....+++++.+.|+|||++++..
T Consensus 217 D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 217 DAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998865544443 33445778999999999999998765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6e-11 Score=110.29 Aligned_cols=110 Identities=23% Similarity=0.155 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|++++...+ . .+++++.+|....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccC
Confidence 334455666666678899999999999999988876 32 489999999 59999999998765 4 5799999998765
Q ss_pred cC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 EL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+||+|++..... .+...+.+.|||||++++.
T Consensus 140 ~~~~~~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 140 YEENAPYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCCCcCEEEECCCcc---------cchHHHHHhhCCCcEEEEE
Confidence 33 36899999853221 1223456789999998764
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=110.83 Aligned_cols=117 Identities=26% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
.+...+..... ..+.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..++ + .++.++.+|+.+...
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhccCc
Confidence 33344444432 34568999999999999999986 34589999999 58899999998875 4 369999999977433
Q ss_pred CCceeEEEEcCCccccC------Ch-----------------hhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLV------NE-----------------RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~------~e-----------------~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|+++++..... .+ .....+++.+.++|+|||.+++.
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 47899999998744211 00 11246788899999999999865
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-11 Score=110.56 Aligned_cols=110 Identities=30% Similarity=0.380 Sum_probs=86.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCc
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEK 130 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~ 130 (414)
.+.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+ .+++++.+++.++. ..++
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESG---LKIDYRQTTAEELAAEHPGQ 114 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcC---CceEEEecCHHHhhhhcCCC
Confidence 344444456788999999999999999998876 69999999 58888888877654 25788888887764 3478
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++..+.++..+ ...++..+.++|+|||.+++..
T Consensus 115 fD~Ii~~~~l~~~~~---~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 115 FDVVTCMEMLEHVPD---PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccEEEEhhHhhccCC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 999998765555544 5778899999999999998653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=123.29 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++++..++ +.++++++.+|+.+....++||+|+||++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhCcCCCccEEEECCCC
Confidence 3468999999999999988865 455899999994 8899999998876 777899999998653334689999999873
Q ss_pred cccC--------------------Ch---hhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLLV--------------------NE---RMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l~--------------------~e---~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.... ++ .....++..+.++|+|||.+++..+
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 2110 01 1245577888899999999987543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=109.60 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=78.3
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cCCCce
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKA 131 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~~~f 131 (414)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .++.++.+|+... .++++|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhccccC
Confidence 455668889999999999999999986 33579999999 5888777666542 4589999998752 234679
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+++.. .......++..+.++|||||.+++.
T Consensus 143 D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 143 DVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99997532 2222345678899999999999875
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.9e-11 Score=117.67 Aligned_cols=122 Identities=23% Similarity=0.173 Sum_probs=89.5
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 44 DYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 44 d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
....++.+.+.+...+. ++.+|||+|||+|.+++.+++. +..+|+|+|+| ++++.|++++..++ .+++++++|
T Consensus 234 PRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gD 308 (423)
T PRK14966 234 PRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGS 308 (423)
T ss_pred CCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcc
Confidence 33445556666655442 4569999999999999998875 45689999999 59999999998765 379999999
Q ss_pred cccccC--CCceeEEEEcCCccccC----------------------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 122 VEEVEL--PEKADILISEPMGTLLV----------------------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 122 ~~~~~~--~~~fDvIis~~~~~~l~----------------------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+... .++||+|+|||+..... +-.....++..+.++|+|||.+++..
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876432 35799999999742110 01124577778889999999986543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=104.11 Aligned_cols=81 Identities=35% Similarity=0.421 Sum_probs=71.1
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
....+..+++|+|+|||||.|++.++-.|+.+|+|+|++ ++++.+++|..+ +..++.++.+|+.++. .++|.++
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~--~~~dtvi 113 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR--GKFDTVI 113 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC--CccceEE
Confidence 345667889999999999999999999999999999999 588999999987 4578999999999875 6799999
Q ss_pred EcCCccc
Q 015038 136 SEPMGTL 142 (414)
Q Consensus 136 s~~~~~~ 142 (414)
.||+...
T Consensus 114 mNPPFG~ 120 (198)
T COG2263 114 MNPPFGS 120 (198)
T ss_pred ECCCCcc
Confidence 9988543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.23 E-value=8e-11 Score=109.43 Aligned_cols=106 Identities=20% Similarity=0.131 Sum_probs=79.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC----------CCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP----------SLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~----------~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+|||+|||.|..+..+|+.|. .|+|+|+|+ .++.+.+...... .-..+|+++++|+.++...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3567999999999999999999998 599999996 6665433211000 0124699999999987642
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||.|+-....+++ +......++..+.++|||||.+++.
T Consensus 112 ~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 579999976555555 4566788999999999999986543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=108.83 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=82.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-CceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LP-EKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~-~~fDvIis 136 (414)
...+|||||||+|.++..+++. +..+|+|+|++ .+++.|++++..++ +. +++++++|+.++. .+ +.+|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 4568999999999999988886 34579999999 59999998888765 54 7999999998753 33 58999998
Q ss_pred cCCccccCCh-----hhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+..+.... -....++..+.++|||||.+++..
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 8654332111 112568899999999999997643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-10 Score=108.40 Aligned_cols=136 Identities=25% Similarity=0.340 Sum_probs=95.9
Q ss_pred hHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLI 105 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~ 105 (414)
.|++.++.+....++ +..|...+.+.+.......++.+|||+|||+|.++..+++.+. +++++|++ .+++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 11 EWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHA 87 (224)
T ss_pred HhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 344444444333332 3333333444444332234578999999999999999988776 59999999 5889999888
Q ss_pred HhCCCCCCcEEEEEcccccccCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 106 AGNPSLGERITVIKGKVEEVELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 106 ~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++ . .++.+..+|+.++... ++||+|++....++..+ +..++..+.+.|+|||.+++..
T Consensus 88 ~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 88 KKDP-L-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPD---PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHcC-C-CceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 7654 2 2588999998876543 68999998765555544 6788899999999999987653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=111.48 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCccHH-HHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGIL-SLFAA-QA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~l-s~~~a-~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis 136 (414)
..+++|+|||||.|.+ ++.++ ++ ...+++++|++ ++++.|++.+....++.++++|..+|+.+... .++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998744 44343 33 34589999999 58899999996532378899999999988643 268999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..+++. ......+++.+.+.|+|||.++...
T Consensus 202 ~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccc-cccHHHHHHHHHHhcCCCcEEEEec
Confidence 8 333332 2336888999999999999998765
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=111.60 Aligned_cols=121 Identities=24% Similarity=0.253 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 47 RTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|++++. +. ...++.++.+|+.+
T Consensus 92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~ 169 (275)
T PRK09328 92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFE 169 (275)
T ss_pred CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccC
Confidence 345555555544445567899999999999999999874 4689999999 58899999887 32 45679999999865
Q ss_pred ccCCCceeEEEEcCCccccC-----------------------ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELPEKADILISEPMGTLLV-----------------------NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~-----------------------~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+++||+|+++++..... .......++..+.++|+|||.+++.
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 43346899999998732110 0122466778888999999999874
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-10 Score=112.51 Aligned_cols=121 Identities=24% Similarity=0.295 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 47 RTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+..+...+......... +|||+|||||.+++.++.... ..|+|+|+|+ .++.|++|+..++ + .++.++.+|..+
T Consensus 95 dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~ 171 (280)
T COG2890 95 DTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFE 171 (280)
T ss_pred chHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeeccc
Confidence 344444544422222222 799999999999999999854 4899999995 7899999999987 6 667777777655
Q ss_pred ccCCCceeEEEEcCCcccc----------------------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 125 VELPEKADILISEPMGTLL----------------------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l----------------------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
- ..++||+|||||+.--- .+-.....++..+.++|+|||.+++..+
T Consensus 172 ~-~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 172 P-LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred c-cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 3 33599999999982111 0112356788889999999999876654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.1e-11 Score=110.46 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc----CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA----GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~----g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.+.+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++. ++.++.+|+......++||+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccccCCccEEEEC
Confidence 4679999999999999998874 234899999995 8888887642 378999999877666799999999
Q ss_pred CCccccCC---------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVN---------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~---------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+..-... -.....++..+.+++++|+.++|..
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 98653221 1225668888889899999887764
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=109.66 Aligned_cols=138 Identities=21% Similarity=0.207 Sum_probs=90.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
...+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++. .+++++++|+.++...++||+|+++++.
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 4568999999999999888775 34589999999 5888888752 2588999999987666789999999987
Q ss_pred cccCChhh-----------------HHHHHHHHHhccCCCeEEEcc--cceeEEeeccchHhHHHHHhhhcccccccccc
Q 015038 141 TLLVNERM-----------------LETYVIARDRFLVPMGKMFPS--VGRIHMAPFSDEYLFVEIANKALFWQQQNYYG 201 (414)
Q Consensus 141 ~~l~~e~~-----------------l~~~l~~~~r~LkpgG~lip~--~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G 201 (414)
+.+..+.. +..++.....+|+|+|.+++. ...+|-+......+ ........|- ....+|
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y-~~~l~~~g~~-~~~~~~ 214 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY-LKWSKQTGLV-TYAGCG 214 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH-HHHHHhcCcE-ecCCCC
Confidence 66433211 245666677888888866543 22333333333222 2222222222 124557
Q ss_pred cccccccc
Q 015038 202 VDLTPLYG 209 (414)
Q Consensus 202 ~d~~~~~~ 209 (414)
+|-+.+++
T Consensus 215 ~~~~~~~~ 222 (279)
T PHA03411 215 IDTSIYRD 222 (279)
T ss_pred cccceehh
Confidence 77766554
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=102.29 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
.+...+..+...++.+++|||||||.+++.++..+ ..+|||+|.+ +.++..++|..+.+ -++++++.+++.+.-.+
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccchHhhcC
Confidence 44556677788899999999999999999999764 4599999999 58899999999876 47899999999886333
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.++|.|+.. -. ..++.+++.+...|||||+++.+..+
T Consensus 100 ~~~~daiFIG---Gg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 100 LPSPDAIFIG---GG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CCCCCEEEEC---CC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 279999963 22 22788889999999999999865443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=109.81 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fDvIis~~ 138 (414)
+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..++ ++++++|+.+.. ..++||+|++|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 458999999999999998875 34589999999 58899999998764 478899987642 135799999999
Q ss_pred Ccccc------CC-----------------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLL------VN-----------------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l------~~-----------------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..-. .. ...+..++..+.++|+|||.+++..
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74311 00 1124578888899999999997653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=104.94 Aligned_cols=109 Identities=23% Similarity=0.295 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-CC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-LP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~~ 128 (414)
..+...+...++.+|||+|||+|.++..+++. +..+|+++|+| .+++.|+++++.++ + .+++++.+|+.+. . ..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECchHHHHhhCC
Confidence 44555665567889999999999999998875 34589999999 59999999998875 4 4699999998652 1 22
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+|.++... ...+..++..+.+.|+|||.++...
T Consensus 108 ~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 108 PAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 3467766532 1235778899999999999997654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-11 Score=122.18 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc--ccCC-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE--VELP- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~--~~~~- 128 (414)
..+.+.+...++++|||||||+|.++..+++.+ .+|+|+|++ .|++.+++.. + ...+++++++|+.. ++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~---~-~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN---G-HYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh---c-cCCceEEEEecccccccCCCC
Confidence 445555555667899999999999999999875 479999999 5887765532 2 33579999999964 3334
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++||+|+++.+.+++.++ .+..++..+.++|||||.+++...
T Consensus 102 ~~fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCEEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEEEec
Confidence 689999999888877553 467889999999999999987643
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=105.11 Aligned_cols=101 Identities=20% Similarity=0.204 Sum_probs=81.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEE-EEEccccccc-C-CCceeEEEEcCCc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERIT-VIKGKVEEVE-L-PEKADILISEPMG 140 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~-vi~~d~~~~~-~-~~~fDvIis~~~~ 140 (414)
..||+||||||..-.+.--....+|+++|+++ |-+.|.+.++++. ..+++ ++.++.++++ + ..++|+||+....
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--CcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 36899999999887777655556899999995 8899999988873 45566 9999999987 3 4799999997655
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+...+ ....|++..|+|+|||++++-.
T Consensus 156 CSve~---~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 156 CSVED---PVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred eccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 54433 7788899999999999997654
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-11 Score=108.61 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=91.2
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+..........+|.|+|||+|..+..+++. +...|+|+|.| +|++.|+.+. .+++|..+|+.++..+...|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcCCCCccc
Confidence 445556667789999999999999999987 55589999999 6999887753 35899999999999888999
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++++|...+++.+ ...++..+...|.|||.+-......+-
T Consensus 95 llfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 95 LLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 9999999999877 456677778899999999766544433
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=108.14 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=74.2
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc----CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCcee
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA----GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKAD 132 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~----g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fD 132 (414)
...++.+|||+|||+|.++..+++. |. .+|+|+|+| .|++.|+++...+ ++++...+...+.. +++||
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD 131 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFD 131 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCcc
Confidence 3346679999999999998888753 32 379999999 5999998875433 35555555554443 36899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+|+++...+++.++ .+..+++++.+.++ ++.++
T Consensus 132 ~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 132 VVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence 99999888887654 35678899999988 44443
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=104.24 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C--CC-ceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L--PE-KADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~--~~-~fDvIi 135 (414)
.++++|||++||+|.+++.++.+|+++|++||.+ ..++.++++++.++ +.++++++.+|+.+. . . .. .+|+|+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 4688999999999999999999999999999999 58899999999886 667899999999654 1 1 12 489999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+|+...-..+..++.+ .. ..+|+++|+++....
T Consensus 127 ~DPPy~~~~~~~~l~~l-~~-~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 127 LDPPFFNGALQALLELC-EN-NWILEDTVLIVVEED 160 (189)
T ss_pred ECcCCCCCcHHHHHHHH-HH-CCCCCCCeEEEEEec
Confidence 98876532222222222 11 357999998876643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=110.43 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=86.7
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 51 YYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 51 ~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
|.+++...+. ..++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+ ..++++++.+|..++-
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIA 131 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHH
Confidence 4444543322 235679999999999999988876 45589999999 58899999876543 4578999999987652
Q ss_pred -CCCceeEEEEcCCccc-cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTL-LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~-l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++||+|+++..... ....-....++..+.+.|+|||++++.
T Consensus 132 ~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 132 VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3468999998754322 111112368889999999999999875
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.4e-10 Score=104.35 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
......+...+...++.+|||+|||+|.++..+++.+. +|+++|.+ .+++.|++++...+ +. +++++.+|..+...
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~ 140 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLG-LH-NVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCC-CC-ceEEEECCcccCCC
Confidence 33445556666667788999999999999998888754 79999999 58899999998775 43 59999999865422
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|++..... .+...+.+.|+|||.+++.
T Consensus 141 ~~~~fD~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 141 AYAPFDRILVTAAAP---------EIPRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCcCEEEEccCch---------hhhHHHHHhcCCCcEEEEE
Confidence 26899999864322 2234556899999998754
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=116.19 Aligned_cols=116 Identities=28% Similarity=0.271 Sum_probs=95.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIi 135 (414)
.+|++|||+.|-||.+++.+|..||++|++||+| ..++.|++|++-|+.-.+++.++++|+.++- ..++||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3599999999999999999999999999999999 5889999999999833577999999998762 124899999
Q ss_pred EcCCccccC------ChhhHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 136 SEPMGTLLV------NERMLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 136 s~~~~~~l~------~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
.+|+...-. -......++..+.++|+|||+++.++++-++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 999854221 123456778888999999999999888755543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=108.05 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-----CCce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-----PEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-----~~~f 131 (414)
.++++|||+|||+|..++.+++. +..+|+++|++ ++++.|+++++.++ +.++|+++.+|+.+.- + .++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 46789999999999988777765 35689999999 58899999999997 8889999999997751 1 3589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+|+.+.. ......++..+.++|+|||+++++..
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 99998532 23356777888899999999987653
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.6e-10 Score=104.52 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+ ..+++.+..+|+... .+.||+|++....
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~--~~~fD~v~~~~~l 137 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLESL--LGRFDTVVCLDVL 137 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCchhc--cCCcCEEEEcchh
Confidence 4678999999999999999999876 59999999 59999999887765 556899999995432 4689999986655
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+++.. ..+..+++.+.+.+++++++
T Consensus 138 ~~~~~-~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 138 IHYPQ-EDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hcCCH-HHHHHHHHHHHhhcCCeEEE
Confidence 45443 34677778888776554444
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-11 Score=112.71 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCCEEEEECCCccH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHh----CC------------------
Q 015038 63 IGRVVVDVGAGSGI----LSLFAAQAG------AKHVYAVEAS-EMAEYARKLIAG----NP------------------ 109 (414)
Q Consensus 63 ~~~~VLDiGcGtG~----ls~~~a~~g------~~~V~gvD~s-~~~~~a~~~~~~----n~------------------ 109 (414)
++.+|||+|||+|. +++.+++.+ ..+|+|+|+| .|++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999995 566666642 2379999999 599999875310 00
Q ss_pred ---CCCCcEEEEEcccccccC-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 110 ---SLGERITVIKGKVEEVEL-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 110 ---~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+..+|++..+|+.+..+ .++||+|+|..+.+++.. .....++..+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECc
Confidence 012468999999998765 478999999776666643 4467889999999999999987543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=115.06 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=88.2
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCcee
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKAD 132 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fD 132 (414)
.+...++.+|||+|||+|..+..+++.+. .+|+|+|++ .++..++++++.++ + +++++.+|+.+... +++||
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCCCC
Confidence 44556788999999999999999998743 589999999 59999999998876 4 37899999987531 36799
Q ss_pred EEEEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 133 ILISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 133 vIis~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
.|+++++.+.. ..+.. ...++..+.++|||||.++.+.++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99998874321 11111 24678889999999999998877644
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=107.92 Aligned_cols=113 Identities=14% Similarity=-0.014 Sum_probs=87.1
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEE
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADIL 134 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvI 134 (414)
+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.++++++.++ + .+++++.+|...+... ++||.|
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence 34467889999999999999988875 2 3489999999 59999999999876 4 4699999998876432 579999
Q ss_pred EEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEccccee
Q 015038 135 ISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 135 is~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
+++++-+.. ..+.. ...++..+.++|||||+++.+.+++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 998774422 11111 2358888999999999998777763
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=100.83 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=80.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC-ce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE-KA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~-~f 131 (414)
.+.+.+...++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.+++++.. ..+++++++|+.++..++ .+
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCC
Confidence 34455555677899999999999999999984 579999999 488998888753 247999999999987664 59
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|.|+++++.+. ....+..++.. ..+.++|.+++..
T Consensus 79 d~vi~n~Py~~--~~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPYNI--STPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCccc--HHHHHHHHHhc--CCCcceEEEEEEH
Confidence 99999987653 23334545432 2345788877654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=104.26 Aligned_cols=107 Identities=26% Similarity=0.306 Sum_probs=92.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..|.......++++|||.|.|+|.++..+|++ | ..+|+..|+. +.++.|++|++..+ +.+++++..+|+.+...++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc
Confidence 44667778889999999999999999999986 3 4699999998 69999999999986 8888999999999988778
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.||.|+.+.+. +..++..+.+.|||||.+++
T Consensus 163 ~vDav~LDmp~--------PW~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 163 DVDAVFLDLPD--------PWNVLEHVSDALKPGGVVVV 193 (256)
T ss_pred ccCEEEEcCCC--------hHHHHHHHHHHhCCCcEEEE
Confidence 99999975432 56788889999999999864
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=115.06 Aligned_cols=115 Identities=19% Similarity=0.172 Sum_probs=88.9
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+| .+++.+++++...+ + .+|+++.+|+.++..+++||+|
T Consensus 245 ~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 245 LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred hcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCcccccccCCCCCEE
Confidence 344567889999999999999888874 23489999999 59999999998876 5 4699999999887655689999
Q ss_pred EEcCCcccc------------CChhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLL------------VNERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l------------~~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++++-+.. ..+.. ...++..+.++|||||+++.+.+++.
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 987663221 11111 23578999999999999998877743
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-10 Score=110.08 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCC---CCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNP---SLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~---~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++..... ....++.+..+|++++ +++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3678999999999999999999876 79999999 59999999876531 0124688888998764 4789999997
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.+++..+. ...++..+.+ +.++|.++
T Consensus 220 ~vL~H~p~~~-~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 220 DVLIHYPQDK-ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CEEEecCHHH-HHHHHHHHHh-hcCCEEEE
Confidence 6655554433 4456666654 46666654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=107.52 Aligned_cols=113 Identities=27% Similarity=0.305 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~----~~~~fDvIi 135 (414)
.++++|||+.|-||.+++.++..|+++|++||.| ..++.|++++..|+ +. ++++++.+|+.++- ..++||+||
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3689999999999999999999999999999999 58899999999998 65 78999999997741 236899999
Q ss_pred EcCCccccC---ChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 136 SEPMGTLLV---NERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 136 s~~~~~~l~---~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++|+...-. -+.....++..+.++|+|||.++.++++.++
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 999844211 1344667888889999999999888776444
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=104.23 Aligned_cols=104 Identities=22% Similarity=0.142 Sum_probs=78.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC----------CCCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN----------PSLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n----------~~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+|||+|||.|..+..+|+.|. +|+|||+|+ .++.+.+..... .....+|++.++|+.++...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3567999999999999999999998 599999996 556543211000 00135799999999988543
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..||.|+-....+++ +......++..+.++|+|||.++
T Consensus 115 ~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 115 ADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 579999976655555 45667889999999999999744
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-10 Score=109.04 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCC-CC--CCcEEEEEccccccc--CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNP-SL--GERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~-~l--~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
.++++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ +. ..+++++.+|...+- ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35679999999999999999887 67799999999 58899999876421 11 468999999998753 24689999
Q ss_pred EEcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++.......... .-..+++.+.+.|+|||+++......+
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 9986543322221 136778889999999999987655433
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=115.28 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=89.0
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCce
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKA 131 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~f 131 (414)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++..++ +. +++++++|+.++. ++++|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 244 PALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccC
Confidence 3444567789999999999999998886 34589999999 58899999998876 54 4999999998763 33689
Q ss_pred eEEEEcCCccccC------------Chhh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 132 DILISEPMGTLLV------------NERM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 132 DvIis~~~~~~l~------------~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|+|+++++.+... .+.. ...++..+.++|||||.++.+.++++
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 9999987733210 1111 24578889999999999987766644
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=102.97 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++. +..+++|+|+| ++++.|+++.. ++.++.+|+.+...+++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFDPFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccCCCCCCCEEEEEECCh
Confidence 35678999999999999998886 45689999999 58898887532 36788888887323468999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+++. ...+..+++++.|.++ +.+++
T Consensus 115 L~hl~-p~~~~~~l~el~r~~~--~~v~i 140 (204)
T TIGR03587 115 LIHIN-PDNLPTAYRELYRCSN--RYILI 140 (204)
T ss_pred hhhCC-HHHHHHHHHHHHhhcC--cEEEE
Confidence 77764 4557888888988873 45544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.9e-10 Score=100.60 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-C
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-P 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~ 128 (414)
....+.+.+...++.+|||||||+|..+..+|+... +|+++|.. +.++.|++++...+ +. +|.++++|...--. .
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg-~~-nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLG-YE-NVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcC-CC-ceEEEECCcccCCCCC
Confidence 445677788888999999999999999999999854 89999998 58899999999876 54 49999999876433 3
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..||.|+...-...+ ++.+ .+.||+||++++-.+
T Consensus 137 aPyD~I~Vtaaa~~v-----P~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV-----PEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC-----CHHH----HHhcccCCEEEEEEc
Confidence 789999975332222 3444 467999999975433
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=99.71 Aligned_cols=107 Identities=20% Similarity=0.281 Sum_probs=82.7
Q ss_pred EEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCC---
Q 015038 66 VVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPM--- 139 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~--- 139 (414)
+|||+|||.|.+...+++.|.. +++|+|.|+ .++.|+..++.++ +++.|++.+.|+.+.. .+++||+|+--..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 9999999999999999998765 499999995 7788888888886 8888999999998853 3478888874221
Q ss_pred --ccccCChhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 140 --GTLLVNERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 140 --~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.+.......+..++..+.++|+|||++++.+|+.
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1111112224566788899999999999888763
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-10 Score=109.17 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=81.9
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCce
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKA 131 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~f 131 (414)
+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| .+++.|+++++.++ + .+++++.+|+.++.. .++|
T Consensus 165 v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~ 241 (315)
T PRK03522 165 ARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVP 241 (315)
T ss_pred HHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCC
Confidence 3333333467899999999999999999987 479999999 59999999999887 5 579999999987642 2579
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
|+|+++|+-..+. ..++..+ ..++|+++++.+...
T Consensus 242 D~Vv~dPPr~G~~-----~~~~~~l-~~~~~~~ivyvsc~p 276 (315)
T PRK03522 242 DLVLVNPPRRGIG-----KELCDYL-SQMAPRFILYSSCNA 276 (315)
T ss_pred eEEEECCCCCCcc-----HHHHHHH-HHcCCCeEEEEECCc
Confidence 9999999854332 2233333 336788888766554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-10 Score=113.48 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=89.0
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCcee
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fD 132 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..+ +. +++++.+|+.++. .+++||
T Consensus 232 ~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 232 LMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhhhhhhhhccCC
Confidence 344567889999999999999988876 24589999999 59999999998876 53 5899999998764 346899
Q ss_pred EEEEcCCccccCC----h---------------hhHHHHHHHHHhccCCCeEEEccccee
Q 015038 133 ILISEPMGTLLVN----E---------------RMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 133 vIis~~~~~~l~~----e---------------~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.|+++++.+.... . .....++..+.++|||||.++.+.|++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999877432211 1 012466888899999999999888873
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-10 Score=107.58 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCce---e--E
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKA---D--I 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~f---D--v 133 (414)
++.+|||+|||+|..+..++++. ..+|+|+|+| +|++.|++++.... ...++..+++|+.+. ..+..+ + +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56799999999999999998874 3479999999 59999988876532 234678899999873 343333 2 3
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++....+.+ .......+++.+.+.|+|||.+++....
T Consensus 142 ~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 142 FFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3333333333 3455778999999999999999876543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=87.94 Aligned_cols=100 Identities=33% Similarity=0.455 Sum_probs=79.3
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcCCccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEPMGTL 142 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~ 142 (414)
+|+|+|||+|.++..+++.+..+++++|.++ ....+++....+ ...++.++.+|+.+... ..++|+|+++.+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999998886667899999995 667776543332 34679999999988763 478999999877655
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ......+++.+.+.|+|||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 445788889999999999999865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.1e-10 Score=113.97 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=89.2
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----C-CC
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----L-PE 129 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~-~~ 129 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.+++++..++ +. +|+++++|+.++. . .+
T Consensus 247 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~~~~~~~~~~~ 324 (434)
T PRK14901 247 LLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRNLLELKPQWRG 324 (434)
T ss_pred HhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhhcccccccccc
Confidence 344567889999999999999998876 23589999999 59999999999876 54 5999999998764 1 36
Q ss_pred ceeEEEEcCCccccC----Ch--------hh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 130 KADILISEPMGTLLV----NE--------RM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 130 ~fDvIis~~~~~~l~----~e--------~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+||.|+++++.+... ++ .. ...++..+.++|||||+++.+.++++
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 899999987633211 11 11 35778899999999999988877744
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=109.60 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCc
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEK 130 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~ 130 (414)
........+..+||||||+|.++..+|+. +...++|+|++ ++++.|.+++..++ + .++.++++|+..+. + +++
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s 192 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNS 192 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCc
Confidence 33444455679999999999999999987 34579999999 69999988888775 5 46999999997642 2 378
Q ss_pred eeEEEEcCCccccCChh---hHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNER---MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~---~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|.|+++.+..+..... ....++..+.|+|+|||.+.+.+
T Consensus 193 ~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 193 VEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred eeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999876543321111 12678899999999999987654
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=97.51 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-
Q 015038 50 TYYAAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV- 125 (414)
Q Consensus 50 ~~~~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~- 125 (414)
..++++...+.. ..+.+|||+.+|||.+++.++.+|+.+++.||.+ ..+...++|++.-+ +..+..++..|....
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHH
Confidence 344555555543 7899999999999999999999999999999999 57789999988765 668899999999854
Q ss_pred -cCCC--ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 126 -ELPE--KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 126 -~~~~--~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.... .||+|+.+|+...-..+.......-.-..+|+|+|.+++....
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 2333 4999999999773222111222222246889999999877554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.9e-10 Score=112.66 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=88.0
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCc
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEK 130 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~ 130 (414)
...+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..+ +..++.+..+|...... .++
T Consensus 231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccc
Confidence 33445567899999999999999999885 44589999999 59999999999876 55445557777765432 367
Q ss_pred eeEEEEcCCccc--cC--Ch--------h-------hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 131 ADILISEPMGTL--LV--NE--------R-------MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 131 fDvIis~~~~~~--l~--~e--------~-------~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
||.|+++++.+. .. .+ . ....++..+.++|||||.++.+.+++.
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 999998866332 11 11 1 125688889999999999998887743
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=102.75 Aligned_cols=115 Identities=28% Similarity=0.260 Sum_probs=81.4
Q ss_pred HHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---
Q 015038 53 AAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--- 126 (414)
Q Consensus 53 ~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--- 126 (414)
+++...+.. .++.+|||+.||||.+++.++.+|+++|+.||.+ ..+...+++++.-+ ..+++.++.+|+...-
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~ 108 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKL 108 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhh
Confidence 444444332 5889999999999999999999999999999999 57789999998765 6678999999975532
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
...+||+|+.+|+...... ...++..+. .+|+++|.++....
T Consensus 109 ~~~~~~fDiIflDPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 109 AKKGEKFDIIFLDPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHCTS-EEEEEE--STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cccCCCceEEEECCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 2478999999998654321 244444444 89999999987643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=102.45 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=85.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-----CCc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-----PEK 130 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-----~~~ 130 (414)
..+.++|||||+|+|..++.+|+. + ..+|+++|.+ +.++.|++++++.+ +.++|+++.+|+.+.- + .++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 356789999999999999999985 2 3479999999 58899999999997 8899999999987641 1 257
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+.+.. ......+++.+.++|+|||+++.+..
T Consensus 195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999997643 34467777888899999999987644
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=111.59 Aligned_cols=114 Identities=24% Similarity=0.202 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
+.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|+| ++++.|++++..++ + .+++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhh
Confidence 3444555555555677899999999999999999876 589999999 59999999998876 5 46999999997642
Q ss_pred ---C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 ---L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ---~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. .++||+|+++++-..+ ..++..+.+ ++|+++++++...
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred hhhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence 2 2579999999986542 233344444 6899988877543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-09 Score=100.87 Aligned_cols=97 Identities=21% Similarity=0.260 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C-CC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L-PE 129 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~-~~ 129 (414)
..++.+|||||||+|.++..+++.. ..+|+|||+++|. + . .+++++++|+++.. . .+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~-~-~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------P-I-VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------C-C-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 3567899999999999999888863 2489999999841 1 2 24899999998853 2 36
Q ss_pred ceeEEEEcCCccccCChh--------hHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNER--------MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~--------~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|+...++..... ..+.++..+.++|||||.+++.
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999986443322211 1356789999999999999763
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=101.07 Aligned_cols=125 Identities=27% Similarity=0.274 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 46 VRTGTYYAAVIENRA---DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~---~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
..++.+..++.+.+. ..++..+||+|||+|..++.++.. +..+|+|||.|+ .+..|.+|+..+. +.+++.+++-
T Consensus 128 pETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~~~ 206 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVIHN 206 (328)
T ss_pred ccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEEec
Confidence 345667777766543 345568999999999999988875 667899999996 6799999999887 8899999977
Q ss_pred ccccc---c---CCCceeEEEEcCCcccc-----------------------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 121 KVEEV---E---LPEKADILISEPMGTLL-----------------------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 121 d~~~~---~---~~~~fDvIis~~~~~~l-----------------------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+++.- + +.++.|+++||++.-.- .+-..+..++.-+.|.|+|||.+.+...
T Consensus 207 ~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 207 IMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 66542 1 22789999999982211 1112244667778899999999987654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=105.03 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+...+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.++ . +++.++.+|..+...
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhccc
Confidence 344455555566788999999999999999988632 369999999 59999999998876 4 579999999876533
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++... ...+...+.+.|+|||.++..
T Consensus 146 ~~~~fD~Ii~~~g---------~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 146 EFAPYDVIFVTVG---------VDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccCCccEEEECCc---------hHHhHHHHHHhcCCCCEEEEE
Confidence 2 57999998421 112223456789999998653
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=106.70 Aligned_cols=101 Identities=12% Similarity=0.112 Sum_probs=79.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
.++.+|||+|||+|.+++.++..+ .+|+|+|++ ++++.|+++++.++ + ++++++.+|+.++.. ..+||+|+.+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEEECC
Confidence 456799999999999999999876 579999999 58899999999886 5 479999999987532 24699999999
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+-..+ . ..++..+. .++|+++++.+..
T Consensus 309 Pr~G~-~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 309 PRRGI-G----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC-c----HHHHHHHH-hcCCCeEEEEEeC
Confidence 96432 2 34444443 3789998876643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=105.78 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis 136 (414)
++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|+++. .++.++.+|+.+++++ ++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeEEEE
Confidence 45789999999999998887652 2369999999 5888887642 2478999999887765 68999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
... . ..+.++.|+|||||.++..
T Consensus 158 ~~~------~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 158 IYA------P----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred ecC------C----CCHHHHHhhccCCCEEEEE
Confidence 421 1 1235678999999999753
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-09 Score=98.50 Aligned_cols=109 Identities=25% Similarity=0.278 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
......+++.+...++.+|||||||+|.++..+++. |.. +|++||.++ +++.|++++...+ . .+|.++.+|...-
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-~-~nv~~~~gdg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-I-DNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-T-HSEEEEES-GGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-c-CceeEEEcchhhc
Confidence 445567778888889999999999999999999987 433 699999995 8899999998865 3 4799999998764
Q ss_pred c-CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 126 E-LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 126 ~-~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
. ...+||.|++..... ..+.. +.+.|++||+++.
T Consensus 136 ~~~~apfD~I~v~~a~~-----~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVP-----EIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp TGGG-SEEEEEESSBBS-----S--HH----HHHTEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccc-----hHHHH----HHHhcCCCcEEEE
Confidence 3 236899999854221 22333 3467999999964
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-09 Score=97.84 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C-C
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L-P 128 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~-~ 128 (414)
...++.+|||+|||+|.++..+++. +..+|+|+|+|++. . . .+++++.+|+.+.. . .
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---~-~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---I-ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---C-CCceEEEeeCCChhHHHHHHHHhCC
Confidence 3457889999999999999888876 34579999999743 1 1 24788888887642 2 3
Q ss_pred CceeEEEEcCCcc----ccCC----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGT----LLVN----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~----~l~~----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++...+ ...+ ....+.++..+.+.|+|||.+++.
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 5799999975321 1111 122467889999999999999864
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-09 Score=96.73 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
..+...+.+. .+.++|||||||+|.-++.+|++ + ..+|+.+|.+ +.++.|+++++..+ +.++|+++.+|+.++
T Consensus 34 g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 34 GQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHH
T ss_pred HHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhh
Confidence 4454555444 36789999999999999999986 2 3489999999 58999999999987 889999999999874
Q ss_pred cC-------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 126 EL-------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 126 ~~-------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
-. .++||+|+.+. +......++..+.++|+|||+++.+..-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHHHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 11 24799999754 2344566777888999999999877544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-09 Score=100.96 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=78.3
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..+.++|+.- +...++.+|||+|||+|.++..+++. + ..+|||||+++ +.+...+.+... .+|.++.+|+
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 3344555432 34567889999999999999999987 3 35899999994 554443333221 3588999998
Q ss_pred cccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 123 EEVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 123 ~~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.... +.+.||+|+++.. . ......++.++.++|||||.+++.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 6521 2357999999763 1 223456667788999999999874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-09 Score=117.26 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=90.1
Q ss_pred hhhHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC-------------
Q 015038 46 VRTGTYYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP------------- 109 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~------------- 109 (414)
..+..+.+.+..... .+++.+|||+|||+|.+++.+++.. ..+|+|+|+|+ +++.|++|+..|+
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~ 179 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEG 179 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccccccc
Confidence 344555555322111 1246799999999999999999863 46899999995 8899999998764
Q ss_pred -CCCCcEEEEEcccccccCC--CceeEEEEcCCccc------c-----------------------------CChhhHHH
Q 015038 110 -SLGERITVIKGKVEEVELP--EKADILISEPMGTL------L-----------------------------VNERMLET 151 (414)
Q Consensus 110 -~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~~~~------l-----------------------------~~e~~l~~ 151 (414)
.+.++++++++|+.+.... .+||+||||++.-. + .+-.....
T Consensus 180 ~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~ 259 (1082)
T PLN02672 180 KTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 259 (1082)
T ss_pred ccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHH
Confidence 1235799999999875422 36999999988210 0 00011356
Q ss_pred HHHHHHhccCCCeEEEcccce
Q 015038 152 YVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 152 ~l~~~~r~LkpgG~lip~~~~ 172 (414)
++..+.++|+|||.+++..+.
T Consensus 260 i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 260 AVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred HHHHHHHhccCCCEEEEEECc
Confidence 778888999999999887654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-09 Score=94.03 Aligned_cols=106 Identities=29% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCC-CCCCcEEEEEccccccc-----CCCcee
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNP-SLGERITVIKGKVEEVE-----LPEKAD 132 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~-----~~~~fD 132 (414)
...++++|||+|||+|..++.+++. +..+|+..|.++.++.++.+++.|+ ....++.+...|..+-. .+.+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4568899999999999999999999 7779999999997789999998874 13467788777664411 135899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|++. ..+.++...+.++..+.++|+++|.+++
T Consensus 122 ~Ilas---Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILAS---DVLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEEE---S--S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEEe---cccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 99973 3444577789999999999999998544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=100.39 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=86.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC-CC-CCcEEEEEccccccc--C-CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP-SL-GERITVIKGKVEEVE--L-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~-~l-~~~i~vi~~d~~~~~--~-~~~fDvI 134 (414)
.++++||+||||.|.++..+++.. ..+|+.||+++ +++.|++.+...+ .+ ..+++++.+|...+- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999999999999999884 57899999995 8899999875421 12 358999999986652 2 3689999
Q ss_pred EEcCCccccCCh-hhHHHHHHHHHhccCCCeEEEcccceeEEe
Q 015038 135 ISEPMGTLLVNE-RMLETYVIARDRFLVPMGKMFPSVGRIHMA 176 (414)
Q Consensus 135 is~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 176 (414)
+++......... -.-..+++.+.+.|+|||+++....+.+..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 997654332211 113567889999999999998776655543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=102.49 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHH--H---hCCCCCCcEEEEEccccccc--CCCcee
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLI--A---GNPSLGERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~--~---~n~~l~~~i~vi~~d~~~~~--~~~~fD 132 (414)
..+++||+||||+|..+..+++.+ ..+|++||+++ +++.|++.. . ....-..+++++.+|+.++- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888874 57899999994 889998621 1 11112468999999998852 236899
Q ss_pred EEEEcCCcccc--CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 133 ILISEPMGTLL--VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 133 vIis~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+|+++...... .....-..+++.+++.|+|||+++....+
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99998653221 11111256888999999999999776543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=98.66 Aligned_cols=111 Identities=13% Similarity=0.125 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCC-CC-CCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNP-SL-GERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~-~l-~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
..+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ .+ ..+++++.+|..++- .+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999998888875 6789999999 48899998775421 11 357899998886642 246899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++.......... ....+++.+.+.|+|||+++....+
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 976533222211 1357778899999999999887544
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-09 Score=102.80 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=87.1
Q ss_pred hhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh--------CCC
Q 015038 40 NMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG--------NPS 110 (414)
Q Consensus 40 ~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~--------n~~ 110 (414)
+-++.++.+..+...+.......++.+|||+|||-|.-..-+.+++..+++|+|++ ..++.|+++... ...
T Consensus 39 R~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 39 RNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 34455555444433333333333678999999999988888888899999999999 577888888721 000
Q ss_pred CCCcEEEEEccccccc-----CC--CceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 111 LGERITVIKGKVEEVE-----LP--EKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 111 l~~~i~vi~~d~~~~~-----~~--~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..-...++.+|..... .+ .+||+|-|-...| .+..+.....++..+.+.|+|||++|-+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1234677888876432 12 4899999976544 5567888899999999999999999754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=107.62 Aligned_cols=113 Identities=22% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHH--HHh-C-CCC-CCcEEEEEccccccc--CCCcee
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKL--IAG-N-PSL-GERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~--~~~-n-~~l-~~~i~vi~~d~~~~~--~~~~fD 132 (414)
.++++|||||||+|..+..+++.+. ++|+++|++ ++++.|+++ +.. + +.+ +++++++.+|..++- .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999998854 799999999 588999983 221 1 012 358999999998752 347899
Q ss_pred EEEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 133 ILISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 133 vIis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+|++++....... ...-+.+++.+.+.|||||+++.+..+.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~ 419 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY 419 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 9999876433211 11124677888999999999988765433
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-09 Score=100.36 Aligned_cols=121 Identities=25% Similarity=0.239 Sum_probs=93.4
Q ss_pred HHHHHHHHHh--cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIEN--RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~--~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
.-+..++... ....++.+|||.+.|-|..++.++++|+.+|+.+|.++ .++.|.-|--..+....+|+++.||+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3444444443 23456899999999999999999999999999999996 66776654322222345689999999887
Q ss_pred c--CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 E--LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~--~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
- ++ ++||+||.+|+-..+..+-.-+.+.++++|+|||||.++-.
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 3 33 67999999999776666666788999999999999999743
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-10 Score=101.71 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=88.0
Q ss_pred hHHHhhhhhhhhHhhhhhhhh--hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVR--TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r--~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~ 103 (414)
..|+-|..... .+|-+... .....+.++......+-+++||+|||||..+..+-.. +.+++|||+| .|++.|.+
T Consensus 89 ~LFD~~Ae~Fd--~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 89 TLFDQYAERFD--HILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHH--HHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHh
Confidence 34555555442 33444432 2344455555554444579999999999998877655 5579999999 59988876
Q ss_pred HHHhCCCCCCcEEEEEcccccc---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 104 LIAGNPSLGERITVIKGKVEEV---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 104 ~~~~n~~l~~~i~vi~~d~~~~---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+- +-+ ++.+++...+ ..+++||+|++.-+..++-. ++.++-.+..+|+|||.+.++.-+
T Consensus 166 Kg-----~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 166 KG-----LYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGA---LEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred cc-----chH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhcc---hhhHHHHHHHhcCCCceEEEEecc
Confidence 41 211 2333444333 23479999998555444443 889999999999999999887543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=97.90 Aligned_cols=106 Identities=26% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
..|...+...+|++|||.|.|+|.++..++++ +..+|+..|.. +.++.|+++++.++ +.+++++.+.|+.+-.+
T Consensus 30 ~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 30 SYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--ST
T ss_pred HHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccc
Confidence 45667778889999999999999999999986 34599999998 69999999999997 88899999999965322
Q ss_pred --CCceeEEEEcCCccccCChhhHHHHHHHHHhcc-CCCeEEE
Q 015038 128 --PEKADILISEPMGTLLVNERMLETYVIARDRFL-VPMGKMF 167 (414)
Q Consensus 128 --~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~li 167 (414)
...+|.|+.+++.- ...+..+.+.| |+||.+.
T Consensus 109 ~~~~~~DavfLDlp~P--------w~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 109 ELESDFDAVFLDLPDP--------WEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp T-TTSEEEEEEESSSG--------GGGHHHHHHHE-EEEEEEE
T ss_pred cccCcccEEEEeCCCH--------HHHHHHHHHHHhcCCceEE
Confidence 35799999876543 33445667889 8999985
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.8e-09 Score=94.51 Aligned_cols=104 Identities=32% Similarity=0.320 Sum_probs=74.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+.+. ..++.+|||+.||.|.+++.+|+. .+++|+|+|+++ .++.++++++.|+ +.++|.++++|..++.....
T Consensus 93 ~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~~~~~~ 169 (200)
T PF02475_consen 93 RRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREFLPEGK 169 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG---TT-
T ss_pred HHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHhcCccc
Confidence 334444 356889999999999999999983 456899999996 7799999999997 88999999999999866789
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+|-|+++.+.... .++.++.+++++||++
T Consensus 170 ~drvim~lp~~~~-------~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLPESSL-------EFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--TSSGG-------GGHHHHHHHEEEEEEE
T ss_pred cCEEEECChHHHH-------HHHHHHHHHhcCCcEE
Confidence 9999998765442 3455567889999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=104.17 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---- 126 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---- 126 (414)
...+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|++ .+++.|++++..|+ + .+++++.+|+.+.-
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQP 357 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHH
Confidence 3444455544566899999999999999999864 589999999 59999999999886 4 57999999997641
Q ss_pred C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..+||+|+.+++-..+. ..++..+.+ ++|+++++++.
T Consensus 358 ~~~~~~D~vi~dPPr~G~~-----~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 358 WAGQIPDVLLLDPPRKGCA-----AEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred hcCCCCCEEEECcCCCCCC-----HHHHHHHHh-cCCCEEEEEcC
Confidence 1 24699999998854332 344444443 78998877653
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=93.90 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=67.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-cc-C-CCceeEEEEcC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VE-L-PEKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~-~-~~~fDvIis~~ 138 (414)
++++|||+|||+|.++..+++.+...++|+|++ ++++.|++ + +++++.+|+.+ +. . +++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 567999999999999998887654568999999 57777653 1 26788888875 32 3 36899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCC
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
..+++.+ +..+++++.|.++++
T Consensus 84 ~l~~~~d---~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 84 TLQATRN---PEEILDEMLRVGRHA 105 (194)
T ss_pred HhHcCcC---HHHHHHHHHHhCCeE
Confidence 7777655 667777777776643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=99.46 Aligned_cols=90 Identities=23% Similarity=0.340 Sum_probs=73.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.|.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++..++ ..++++++++|+.+...+
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~~~~- 100 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKTEFP- 100 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhhccc-
Confidence 445566666667788999999999999999998754 69999999 59999999887654 457899999999887653
Q ss_pred ceeEEEEcCCcccc
Q 015038 130 KADILISEPMGTLL 143 (414)
Q Consensus 130 ~fDvIis~~~~~~l 143 (414)
.+|+|++|++.+.-
T Consensus 101 ~~d~VvaNlPY~Is 114 (294)
T PTZ00338 101 YFDVCVANVPYQIS 114 (294)
T ss_pred ccCEEEecCCcccC
Confidence 78999999876543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=90.66 Aligned_cols=118 Identities=21% Similarity=0.253 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCC-e---------EEEEeCh-HHHHHHHHHHHhCCCCCCcEEE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK-H---------VYAVEAS-EMAEYARKLIAGNPSLGERITV 117 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~-~---------V~gvD~s-~~~~~a~~~~~~n~~l~~~i~v 117 (414)
.....++.......++..|||-.||+|.+.+.++..+.. . ++|+|++ .++..|++|+...+ +...+.+
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~ 92 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDF 92 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEE
Confidence 445567777766677889999999999999998876332 2 7899999 58899999999887 7888999
Q ss_pred EEccccccc-CCCceeEEEEcCCccccCC-----hhhHHHHHHHHHhccCCCeEEE
Q 015038 118 IKGKVEEVE-LPEKADILISEPMGTLLVN-----ERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 118 i~~d~~~~~-~~~~fDvIis~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.|+.+++ ..+.+|+||++++...-.. +.....+++.+.+.|++...++
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 999999998 4579999999988543222 2334567788889999944443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=93.70 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEE-cccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIK-GKVE 123 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~-~d~~ 123 (414)
+..|...+.+. ...++|||||++.|.-++.+|.. . ..++++||.+ ++++.|++++++.+ +.++|+++. +|..
T Consensus 47 ~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal 122 (219)
T COG4122 47 TGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDAL 122 (219)
T ss_pred HHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHH
Confidence 45555555544 47889999999999999999986 3 4589999999 59999999999997 888999999 5776
Q ss_pred ccc---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 124 EVE---LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 124 ~~~---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+.- ..++||+|+.+. +......+++.+.++|+|||+++.+..-..
T Consensus 123 ~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 652 247999999642 233456778888899999999988765443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=97.38 Aligned_cols=87 Identities=25% Similarity=0.404 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+.+.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++.. ..+++++++|+.++..+
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCCch
Confidence 3445566666666789999999999999999999854 79999999 588998887653 24799999999987665
Q ss_pred CceeEEEEcCCccc
Q 015038 129 EKADILISEPMGTL 142 (414)
Q Consensus 129 ~~fDvIis~~~~~~ 142 (414)
.+|.|++|++.+.
T Consensus 91 -~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 -EFNKVVSNLPYQI 103 (258)
T ss_pred -hceEEEEcCCccc
Confidence 5899999988553
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=94.34 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C------CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L------PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~------~~~ 130 (414)
.+.++|||||+++|.-++.+|++ + ..+|+++|.+ +.++.|++++++.+ +.++|+++.+++.+.- + .++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCCc
Confidence 46789999999999999999876 2 3489999999 58899999999987 8899999999987751 1 258
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
||+|+.+. +......++..+.++|+|||+++++..-
T Consensus 157 fD~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ccEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 99999753 2333566677778999999999876543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.7e-08 Score=97.53 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=68.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++|+.+++.++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHH
Confidence 344555655556788999999999999999999876 79999999 588888876532 47999999999886653
Q ss_pred c-eeEEEEcCCccc
Q 015038 130 K-ADILISEPMGTL 142 (414)
Q Consensus 130 ~-fDvIis~~~~~~ 142 (414)
. .|.||+|++.+.
T Consensus 104 ~~~~~vv~NlPY~i 117 (272)
T PRK00274 104 LQPLKVVANLPYNI 117 (272)
T ss_pred cCcceEEEeCCccc
Confidence 2 599999987443
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=96.37 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-cccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-KVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~ 126 (414)
..+.+++.+.....+|..|||--||||.+.+.+.-.|+ +++|+|++ .|++-|+.|++..+ ..+ ..+... |+..++
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~lp 259 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEecccccCC
Confidence 44566777777778899999999999999999999998 69999999 69999999999875 433 555555 999999
Q ss_pred CCCc-eeEEEEcCCcccc---C---ChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 LPEK-ADILISEPMGTLL---V---NERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~~~~-fDvIis~~~~~~l---~---~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++++ +|.|+++|+..-- . -+.....+++.+.+.||+||.+++
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEE
Confidence 8864 9999999873211 1 134577888999999999998854
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.4e-08 Score=90.76 Aligned_cols=107 Identities=21% Similarity=0.216 Sum_probs=82.0
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
.+.......+.++|||||+|+|.++..++++ ..-+++.+|..+.++.+++ .++|+++.+|+. -+.|. +|
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~--------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE--------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH--------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc--------ccccccccccHH-hhhcc-cc
Confidence 3444554455679999999999999999987 4458999999888877777 357999999998 45666 99
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCC--eEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPM--GKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg--G~lip~~~ 171 (414)
+++...+.|...+ .....+|+++++.|+|| |++++...
T Consensus 161 ~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9998877777655 44678899999999999 99887644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=92.70 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCC-------------------------
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLG------------------------- 112 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~------------------------- 112 (414)
..+.++.+|||||.+|.++..+|+. |+..|.|+|+++ .+..|+++++.--...
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 3467889999999999999999987 888999999996 7799999875321000
Q ss_pred ---------------CcEEEEEcccccccCCCceeEEEEcCCcc--ccC-ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 113 ---------------ERITVIKGKVEEVELPEKADILISEPMGT--LLV-NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 113 ---------------~~i~vi~~d~~~~~~~~~fDvIis~~~~~--~l~-~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+..+...|+.+. ...+||+|+|-.+.- ++. +..-+..++..+.++|.|||++++.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0111111222211 125799999854321 222 2334788999999999999999854
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-08 Score=90.90 Aligned_cols=106 Identities=17% Similarity=0.055 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHH------h-CC---CCCCcEEEEEcccccccCC--
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIA------G-NP---SLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~------~-n~---~l~~~i~vi~~d~~~~~~~-- 128 (414)
.++.+||+.|||.|.-+..+|+.|.. |+|+|+|+ .++.+.+... . +. .-..+|+++++|+.++...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 35689999999999999999999995 99999996 4455533110 0 00 0135799999999998532
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+-....+.+ ++.+...+.+.+.++|+|||.++.-
T Consensus 121 ~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 589998865555555 5677889999999999999987643
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-08 Score=89.79 Aligned_cols=107 Identities=26% Similarity=0.228 Sum_probs=78.5
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh--C----CC----CCCcEEEEEcccccccC
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG--N----PS----LGERITVIKGKVEEVEL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~--n----~~----l~~~i~vi~~d~~~~~~ 127 (414)
+...++.+||..|||.|.-...+|+.|. +|+|+|+|+ .++.+.+.... . +. -..+|+++++|+.++..
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 4445677999999999999999999998 699999996 44555322110 0 00 12468999999999875
Q ss_pred C--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 128 P--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 128 ~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. ++||+|+=....+.+ ++.+...+.+.+.++|+|||.++
T Consensus 112 ~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 112 EDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp SCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 5 579999965555554 46778999999999999999954
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=90.85 Aligned_cols=100 Identities=21% Similarity=0.212 Sum_probs=74.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccC-CCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VEL-PEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~-~~~fDvIis~~~ 139 (414)
+..-|||||||+|+-+..+...|. ..+|+|+| .|++.|.+..-+ -.++.+|+-+ +++ |+.||-+||-..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e-------gdlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE-------GDLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh-------cCeeeeecCCCCCCCCCccceEEEeee
Confidence 567899999999999999888885 69999999 599999863221 2477777754 343 379999997543
Q ss_pred ccccCC--------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVN--------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++.+ ..-+..++..++..|++|+..+++.
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 333322 2336677888999999999987653
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.4e-08 Score=94.56 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCC----CcEEEEEccccccc------CCC-
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLG----ERITVIKGKVEEVE------LPE- 129 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~----~~i~vi~~d~~~~~------~~~- 129 (414)
.++..++|+|||-|.-.+-+-++|..+++|+|+.+ .++.|+++.+...... -.+.++.+|..... .+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 56788999999999999999999999999999996 7788888765432111 24789999886542 233
Q ss_pred ceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|-|-...| .+..+.....++.++.+.|+|||++|-+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 499999876555 4456777889999999999999999643
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=97.61 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=78.0
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMG 140 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~ 140 (414)
+.+|||++||+|.+++.++.. ++.+|+++|+++ .++.++++++.|+ +. +++++++|+..+-. .++||+|+.+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKDANALLHEERKFDVVDIDPFG 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhhHHHHHhhcCCCCEEEECCCC
Confidence 468999999999999999864 667899999995 8899999999886 53 57799999977533 4679999999863
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ...++..+.+.+++||+++++
T Consensus 136 s-------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 S-------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-------cHHHHHHHHHHhcCCCEEEEE
Confidence 2 234556655678999999887
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-08 Score=93.19 Aligned_cols=99 Identities=21% Similarity=0.151 Sum_probs=72.6
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCcccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMGTLL 143 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~~~l 143 (414)
.++|+|||+|..++.+|.. .++|+|+|+| .|++.|++.....- ......+...++.++.- ++++|+|++.--.|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 8999999999777777776 6689999999 59998887654332 22334555555555532 4799999997666665
Q ss_pred CChhhHHHHHHHHHhccCCCe-EEEccc
Q 015038 144 VNERMLETYVIARDRFLVPMG-KMFPSV 170 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG-~lip~~ 170 (414)
. ++.+.+.++|+||++| .+.+-.
T Consensus 114 d----le~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 114 D----LERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred c----hHHHHHHHHHHcCCCCCEEEEEE
Confidence 4 6788899999999887 554433
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=94.83 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=72.7
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------C----
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----------P---- 128 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----------~---- 128 (414)
.+|||+|||+|.+++.+++. +++|+|||++ ++++.|++++..|+ + .+++++.+|+.++.. .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 46999999999999988876 4589999999 59999999999886 5 469999999977421 1
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++|+|+.+|+-..+ . +.++..+. +|+++++++..
T Consensus 276 ~~~~~d~v~lDPPR~G~-~----~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGL-D----PDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCCCC-c----HHHHHHHH---cCCcEEEEEcC
Confidence 137999999995433 2 34444443 37787776644
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=88.11 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
.++.+|||+|||.|.+...+.+....+.+|+|+++ .+..|.+ + .+.++++|+.+-- + .++||.||.+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----r-----Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----R-----GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----c-----CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 46899999999999998888876445799999994 4444433 2 2789999997731 2 3789999975
Q ss_pred CCccccCChhhHHHHHHHHHhccCC
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVP 162 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~Lkp 162 (414)
-....+. .++.+++++.|.-|.
T Consensus 83 qtLQ~~~---~P~~vL~EmlRVgr~ 104 (193)
T PF07021_consen 83 QTLQAVR---RPDEVLEEMLRVGRR 104 (193)
T ss_pred hHHHhHh---HHHHHHHHHHHhcCe
Confidence 4444433 367778777666443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.4e-08 Score=94.18 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=60.5
Q ss_pred CCCEEEEECCCccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhC-CCCCCcEEEEE-ccccccc-----CCCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGN-PSLGERITVIK-GKVEEVE-----LPEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n-~~l~~~i~vi~-~d~~~~~-----~~~~fDv 133 (414)
++.+|||||||+|.+...++. ....+++|+|+++ .++.|++++..| + +.++|+++. .+..++. ..++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999866655554 3344799999995 889999999999 5 888998865 3333221 2368999
Q ss_pred EEEcCCcccc
Q 015038 134 LISEPMGTLL 143 (414)
Q Consensus 134 Iis~~~~~~l 143 (414)
|+|||+.+--
T Consensus 193 ivcNPPf~~s 202 (321)
T PRK11727 193 TLCNPPFHAS 202 (321)
T ss_pred EEeCCCCcCc
Confidence 9999997643
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=89.35 Aligned_cols=90 Identities=27% Similarity=0.360 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....+...|||||.|||.++..+.++|+ +|+|+|++ .|+....+++..-+ .+.+..++.+|+...++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccccCCC
Confidence 44567777888888899999999999999999999977 59999999 49988888887765 56899999999998876
Q ss_pred CCceeEEEEcCCcc
Q 015038 128 PEKADILISEPMGT 141 (414)
Q Consensus 128 ~~~fDvIis~~~~~ 141 (414)
| .||++|+|.+..
T Consensus 122 P-~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 P-RFDGCVSNLPYQ 134 (315)
T ss_pred c-ccceeeccCCcc
Confidence 5 899999987643
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=82.04 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=79.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..+.+||||||+|..+-++++. +...+.++|+|+ .++..++.++.|+ .++.++..|+.+--.++++|+++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhccCCccEEEECCC
Confidence 3678999999999999999886 455789999996 5566677777765 458899999887655589999999987
Q ss_pred cccc------------------CChhhHHHHHHHHHhccCCCeEEEc
Q 015038 140 GTLL------------------VNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 140 ~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.--- .+......++..+..+|.|.|.++.
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 2211 1222356788888889999999864
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-07 Score=94.29 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=73.0
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C--------------
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-------------- 127 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-------------- 127 (414)
.+|||++||+|.+++.+++. +++|+|||.+ ++++.|++++..|+ + .+++++.+|+.++- +
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 57999999999999988875 5689999999 59999999999886 5 47999999997741 1
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..+||+|+.+|+-..+ . +.++..+. +|+++++++...
T Consensus 285 ~~~~~D~v~lDPPR~G~-~----~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 285 KSYNFSTIFVDPPRAGL-D----DETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred cCCCCCEEEECCCCCCC-c----HHHHHHHH---ccCCEEEEEeCH
Confidence 1158999999995432 2 34444443 367777766443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=88.24 Aligned_cols=85 Identities=29% Similarity=0.400 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.....++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++.+
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh-
Confidence 345566666666788999999999999999999875 69999999 588888876642 35799999999987654
Q ss_pred cee---EEEEcCCcc
Q 015038 130 KAD---ILISEPMGT 141 (414)
Q Consensus 130 ~fD---vIis~~~~~ 141 (414)
.+| +|+++++.+
T Consensus 91 ~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 DFPKQLKVVSNLPYN 105 (253)
T ss_pred HcCCcceEEEcCChh
Confidence 566 999987744
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=92.43 Aligned_cols=98 Identities=27% Similarity=0.308 Sum_probs=83.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
..|.+|||+-||.|.+++.+|+.|..+|+|+|+|+ .++.++++++.|+ +.++++.+++|..++... +.+|-|+++.+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35899999999999999999999987799999996 7799999999997 888899999999998766 78999998655
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.. ...++..+.+.+++||++-
T Consensus 266 ~~-------a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 266 KS-------AHEFLPLALELLKDGGIIH 286 (341)
T ss_pred Cc-------chhhHHHHHHHhhcCcEEE
Confidence 42 2345556667888999873
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-08 Score=90.25 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred EEEEECCCccHHHHHHHHcCC---CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEEE
Q 015038 66 VVVDVGAGSGILSLFAAQAGA---KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILIS 136 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~---~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIis 136 (414)
+||+||||.|.....+.+-.. -+|+++|.|+ .++..+++...+ ..++.....|+..-. .++.+|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD---ESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc---hhhhcccceeccchhccCCCCcCccceEEE
Confidence 799999999999998888633 3899999996 667766665443 245555555554432 2368999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
-...+.+..+. ....+..+.++|||||.+++..+-
T Consensus 151 IFvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecc
Confidence 77777776655 567779999999999999876543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.9e-08 Score=81.41 Aligned_cols=86 Identities=17% Similarity=0.262 Sum_probs=71.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.|-....+..|++++|+|||+|.++..++-.++..|.|+|+++ .++.+.+|+.. +.-++.++++|+.+..+. +.|
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE---fEvqidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE---FEVQIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH---hhhhhheeeeeccchhccCCeE
Confidence 3444566789999999999999999888777888999999995 78999999887 456789999999998765 689
Q ss_pred eEEEEcCCccc
Q 015038 132 DILISEPMGTL 142 (414)
Q Consensus 132 DvIis~~~~~~ 142 (414)
|.++.|++...
T Consensus 116 DtaviNppFGT 126 (185)
T KOG3420|consen 116 DTAVINPPFGT 126 (185)
T ss_pred eeEEecCCCCc
Confidence 99999987543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4e-07 Score=90.30 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCC----------------------------------------e
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK----------------------------------------H 88 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~----------------------------------------~ 88 (414)
+++..+|.....-.++..++|--||+|.+.+.+|..+.. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 556678888777777789999999999999999987531 3
Q ss_pred EEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc-ccCChhhHH----HHHHHHHhccC
Q 015038 89 VYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT-LLVNERMLE----TYVIARDRFLV 161 (414)
Q Consensus 89 V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~-~l~~e~~l~----~~l~~~~r~Lk 161 (414)
++|+|++ .+++.|+.|+...+ +.+.|+|.++|+..+..+ +.+|+|||||+.. -+..+.+.. .+...+++.++
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 7899999 59999999999987 899999999999999877 8999999999843 344443343 44455566677
Q ss_pred CCeEEEcccc
Q 015038 162 PMGKMFPSVG 171 (414)
Q Consensus 162 pgG~lip~~~ 171 (414)
.-+..+++..
T Consensus 336 ~ws~~v~tt~ 345 (381)
T COG0116 336 GWSRYVFTTS 345 (381)
T ss_pred CCceEEEEcc
Confidence 6677765544
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-08 Score=88.75 Aligned_cols=105 Identities=17% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
..++||.|||.|..+..+...-+.+|-.||.+ ..++.|++.+... .....++++..++++.++ .+||+|.+-|...
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~--~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD--NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG--GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc--CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46899999999999987765557899999999 5889998776542 234578889999999775 6999999999988
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++.++. +-.+|..+...|+|+|.|++-.+
T Consensus 134 hLTD~d-lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 134 HLTDED-LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp GS-HHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHH-HHHHHHHHHHhCcCCcEEEEEec
Confidence 887655 78899999999999999987543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.3e-07 Score=86.94 Aligned_cols=96 Identities=24% Similarity=0.313 Sum_probs=60.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEE-EEEccccc-----c
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERIT-VIKGKVEE-----V 125 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~-vi~~d~~~-----~ 125 (414)
.++.......++++|||+|||+|.++..+++.|+++|+|+|+++ |+.. .+..+ .++. +-..+++. +
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~---~l~~~----~~v~~~~~~ni~~~~~~~~ 137 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE---KLRQD----ERVKVLERTNIRYVTPADI 137 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH---HHhcC----CCeeEeecCCcccCCHhHc
Confidence 33333333468889999999999999999999999999999995 6643 12222 1222 22223332 2
Q ss_pred cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 126 ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..+ ..+|++++. +..++..+.++|+| |.++
T Consensus 138 ~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 138 FPDFATFDVSFIS-----------LISILPELDLLLNP-NDLT 168 (228)
T ss_pred CCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEE
Confidence 111 256666542 23346677788999 7665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=91.22 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=80.2
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCC-C-CCCcEEEEEccccccc--CCCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNP-S-LGERITVIKGKVEEVE--LPEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~-~-l~~~i~vi~~d~~~~~--~~~~fDvIis 136 (414)
..++||.||+|.|.++..+++. +..+|++||+++ +++.|++.+..+. . -..+++++.+|...+- .+++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 5679999999999999998886 567899999995 8899999875431 1 1468999999998862 2368999999
Q ss_pred cCCcccc---CChhhHHHHHH-HHHhccCCCeEEEcccc
Q 015038 137 EPMGTLL---VNERMLETYVI-ARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 137 ~~~~~~l---~~e~~l~~~l~-~~~r~LkpgG~lip~~~ 171 (414)
+.....- ...-.-..+++ .+.+.|+|||+++....
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 8542110 00001245666 78899999999876543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-07 Score=92.89 Aligned_cols=115 Identities=25% Similarity=0.266 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.....+.+...++.+|||+-||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|+ ..+ ++++.++++++..
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~-i~N-~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANG-IDN-VEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcC-CCc-EEEEeCCHHHHhh
Confidence 334455556666667889999999999999999975 5579999999 58899999999997 554 9999999998754
Q ss_pred C----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 128 P----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 128 ~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. ..+|+|+.+|+-.++. +.+++.+. .++|..+++++.+.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGAD-----REVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred hccccCCCCEEEECCCCCCCC-----HHHHHHHH-hcCCCcEEEEeCCH
Confidence 3 4789999999987764 24444443 46888888877554
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=87.44 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.|.+.....++..|||||+|.|.++..+++.+. +|+|+|+++ ++...++.+. ..++++++++|+.+++++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchh
Confidence 456677777777789999999999999999999977 599999995 7787777754 2367999999999998886
Q ss_pred --ceeEEEEcCCccc
Q 015038 130 --KADILISEPMGTL 142 (414)
Q Consensus 130 --~fDvIis~~~~~~ 142 (414)
.++.|++|.+.+.
T Consensus 93 l~~~~~vVaNlPY~I 107 (259)
T COG0030 93 LAQPYKVVANLPYNI 107 (259)
T ss_pred hcCCCEEEEcCCCcc
Confidence 7899999987654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-07 Score=83.04 Aligned_cols=104 Identities=14% Similarity=0.236 Sum_probs=72.5
Q ss_pred CEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cCCCceeEEEEcC
Q 015038 65 RVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKADILISEP 138 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~~~fDvIis~~ 138 (414)
..+||||||.|.+.+.+|+. .-..++|+|+. +.+..|.+++...+ + .|+.++++|+..+ ..++++|-|..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 38999999999999988887 45689999999 56666666665543 3 6899999998873 2347899999876
Q ss_pred CccccCChh-----hHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNER-----MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~-----~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.-+.-... .-..++..+.+.|+|||.+.+.+
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 644322111 12577888899999999986543
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-06 Score=83.70 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC--CCCCcEEEEEccccccc--CCCceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP--SLGERITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~--~l~~~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
.++||-||-|.|..+..+++.. ..+++.||+++ +++.|++.+.... ....|++++.+|..++- .+++||+||++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999985 67999999995 8899999876432 12479999999998873 33589999987
Q ss_pred CCccccCChhh-HHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 138 PMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 138 ~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
........+.. -..+++.+++.|+++|+++....+.+...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 55432221111 26788999999999999998877766655
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.2e-07 Score=96.58 Aligned_cols=118 Identities=23% Similarity=0.166 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHcC------------------------------------------
Q 015038 49 GTYYAAVIENRAD-FIGRVVVDVGAGSGILSLFAAQAG------------------------------------------ 85 (414)
Q Consensus 49 ~~~~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~~a~~g------------------------------------------ 85 (414)
+.+..+|+....- .++..++|.+||+|.+.+.+|..+
T Consensus 175 etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 175 ENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 5566777766543 457899999999999998887531
Q ss_pred -CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC---CceeEEEEcCCcc-ccCChhhHHHHHHHHHhc
Q 015038 86 -AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP---EKADILISEPMGT-LLVNERMLETYVIARDRF 159 (414)
Q Consensus 86 -~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~ 159 (414)
..+++|+|++ .+++.|++|+..++ +.+.+++.++|+.++..+ +++|+|++||+.. -+..+..+..+...+.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 1269999999 58999999999987 888899999999887544 4699999998843 232333344444433333
Q ss_pred cC---CCeEEE
Q 015038 160 LV---PMGKMF 167 (414)
Q Consensus 160 Lk---pgG~li 167 (414)
|+ +|+.++
T Consensus 334 lk~~~~g~~~~ 344 (702)
T PRK11783 334 LKQQFGGWNAA 344 (702)
T ss_pred HHHhCCCCeEE
Confidence 33 666553
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-07 Score=89.53 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
+.+|||+.||+|..++.++.. |+++|+++|+|+ .++.+++|++.|+ . .+++++++|+..+-. ..+||+|..+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 358999999999999999987 788999999995 7799999999886 4 368999999987632 25799999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++. ...++..+.+.+++||.++++.
T Consensus 123 fGs-------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 FGT-------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCC-------cHHHHHHHHHhcccCCEEEEEe
Confidence 532 2356677778899999998774
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=89.51 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=88.8
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEE
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
...++.+|||++||.|.-+..+|.. +...|+|+|++ .-++.+++++...+ + .++.+.+.|...+. .++.||.|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~-~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-V-SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCchhhhhhhchhhcCeE
Confidence 4468899999999999999888876 23489999999 57888899998875 4 45889999987653 34689999
Q ss_pred EEcCCcc----ccCChhh---------------HHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 135 ISEPMGT----LLVNERM---------------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 135 is~~~~~----~l~~e~~---------------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
+.+.+-+ +-.++.. -..+|..+.++|||||+|+-+.|++ .|-+.+.
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~--~~eENE~ 252 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL--NREENQA 252 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC--CHHHHHH
Confidence 9776633 2222111 1467888899999999999888873 3444443
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.6e-07 Score=78.22 Aligned_cols=74 Identities=20% Similarity=0.161 Sum_probs=55.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC---C-ceeEEEEcCC
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP---E-KADILISEPM 139 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~-~fDvIis~~~ 139 (414)
.+|+|+.||.|..++.+|+.. .+|+|||+++ .++.|+.+++-.+ ..++|+++++|+.++... . .+|+|++.|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 379999999999999999984 4799999995 8899999999887 788999999999886432 1 2899999887
Q ss_pred c
Q 015038 140 G 140 (414)
Q Consensus 140 ~ 140 (414)
.
T Consensus 79 W 79 (163)
T PF09445_consen 79 W 79 (163)
T ss_dssp B
T ss_pred C
Confidence 3
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=73.22 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccH-HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGI-LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~-ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-- 128 (414)
..|.++....++++|||||||+|. ++..+++.|. .|+|+|+++ .++.|+++ .+.++.+|+.+..+.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHH
Confidence 445555555667899999999996 8999998887 699999996 55555443 268999999886554
Q ss_pred CceeEEEE
Q 015038 129 EKADILIS 136 (414)
Q Consensus 129 ~~fDvIis 136 (414)
+.+|+|.+
T Consensus 76 ~~a~liys 83 (134)
T PRK04148 76 KNAKLIYS 83 (134)
T ss_pred hcCCEEEE
Confidence 68999998
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=75.16 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
..+.+........+..|||+|.|||.++..+.+.|. ..++++|.| +.+....+.. +.+.++++|+.++.
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~ 108 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHH
Confidence 345566666667788999999999999999999875 489999999 5666665543 23679999998875
Q ss_pred -C----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -L----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ...||.|||..+.-.+.-.. --.+++.+...|..||.++--
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~-~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHR-RIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHH-HHHHHHHHHHhcCCCCeEEEE
Confidence 2 24699999976654443322 456778888889999988643
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-07 Score=79.73 Aligned_cols=104 Identities=26% Similarity=0.367 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
+.+..+.....+++|||+|+|+|+.++.++++|++.|++.|+.+ .....+.|++.|+ -.|.+...|... .+..|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g--~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG--SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC--CCcce
Confidence 44555566678999999999999999999999999999999997 4466677777776 458888888766 45789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeE
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
|+|+. +..+.+......++. +.+.|+..|.
T Consensus 144 Dl~La---gDlfy~~~~a~~l~~-~~~~l~~~g~ 173 (218)
T COG3897 144 DLLLA---GDLFYNHTEADRLIP-WKDRLAEAGA 173 (218)
T ss_pred eEEEe---eceecCchHHHHHHH-HHHHHHhCCC
Confidence 99996 444455555566666 4445555554
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-06 Score=79.57 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=78.0
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-CceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LP-EKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~-~~fDvIis~ 137 (414)
...+||||||.|.+...+|+. .-..++|||+. +.+..|.+.+.+.+ +. |+.+++.|+.++- .+ ++.|-|..+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 368999999999998888887 44589999998 67777777777654 43 8999999998762 23 489999987
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.-+.-.. -.-..++..+.+.|+|||.+.+.
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 664432211 11257788889999999998654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.42 E-value=5e-06 Score=79.29 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=94.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
.+|........+-+||||.||.|...+.+... + ..+|...|.|+ .++..++.++.++ +.+.++|.++|+.+..
T Consensus 125 ~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 125 QAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCCHhHh
Confidence 44444433345669999999999888777765 2 35899999996 7799999999987 8888899999998753
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+..+.+++|...+...+.+..++...+..+.+.+.|||.+|.+.-++|
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 224678888777777777767788888999999999999987664444
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.3e-07 Score=78.79 Aligned_cols=78 Identities=15% Similarity=-0.007 Sum_probs=60.7
Q ss_pred EEEeCh-HHHHHHHHHHHhCC-CCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 90 YAVEAS-EMAEYARKLIAGNP-SLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 90 ~gvD~s-~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+|+|+| +|++.|+++..... ....+++++.+|+++++.+ ++||+|++....+++.+ ...+++++.|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD---RLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC---HHHHHHHHHHHcCcCeEE
Confidence 489999 59999987765321 1235799999999998775 58999999765555543 678899999999999999
Q ss_pred Eccc
Q 015038 167 FPSV 170 (414)
Q Consensus 167 ip~~ 170 (414)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 7653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-06 Score=83.24 Aligned_cols=90 Identities=30% Similarity=0.313 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
+...+.+.+...++ .|||+-||+|.+++.+|+.. ++|+|||.+ ++++.|++++..|+ + ++++++.++++++..
T Consensus 185 l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~-i-~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 185 LYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNG-I-DNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHH
T ss_pred HHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcC-C-CcceEEEeeccchhHHH
Confidence 33445555555445 89999999999999999864 579999999 58899999999997 5 579999988765421
Q ss_pred ---------------CCceeEEEEcCCccccC
Q 015038 128 ---------------PEKADILISEPMGTLLV 144 (414)
Q Consensus 128 ---------------~~~fDvIis~~~~~~l~ 144 (414)
...+|+|+.+|+-.++.
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 12689999999977764
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=9e-07 Score=84.17 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=79.4
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC--CCCCcEEEEEccccccc--CCC-ceeEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP--SLGERITVIKGKVEEVE--LPE-KADILI 135 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~--~l~~~i~vi~~d~~~~~--~~~-~fDvIi 135 (414)
++++||-||.|.|..+..+.+.. .++|++||+++ +++.|++.+.... .-+.|++++.+|...+- ..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 67899999999999999999875 67999999995 7799988765421 12468999999998762 335 899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEccc
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+.......... .-..+++.+++.|+|||+++...
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 976642211111 12577889999999999998765
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.8e-06 Score=75.59 Aligned_cols=98 Identities=24% Similarity=0.408 Sum_probs=74.3
Q ss_pred EEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcccc
Q 015038 66 VVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLL 143 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l 143 (414)
+++|||+|.|.-++.+|-. +..+++.+|.+ .-+...+..+..-+ + .+++++++.+++....++||+|++-.+..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEEPEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecccccCCCccEEEeehhcC--
Confidence 8999999999988888876 44589999998 45555555555544 5 36999999999944457999999976543
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+..++.-+.++|++||.++...+.
T Consensus 127 -----l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 127 -----LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp -----HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 567778889999999999866554
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.8e-06 Score=77.50 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=54.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
+..+|.|+|||.+.++..+. .+. +|+..|+-. .| -.++.+|+..++++ +.+|++|+.+-..
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva----------~n------~~Vtacdia~vPL~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA----------PN------PRVTACDIANVPLEDESVDVAVFCLSLM 133 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS------TTEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC----------CC------CCEEEecCccCcCCCCceeEEEEEhhhh
Confidence 45699999999999985543 233 599999843 12 23777999999887 6899999753221
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+ .+ +..++.++.|.|||||.+.+....
T Consensus 134 G-Tn---~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 134 G-TN---WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp S-S----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred C-CC---cHHHHHHHHheeccCcEEEEEEec
Confidence 1 12 678889999999999999766544
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-06 Score=78.41 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCCEEEEECCCcc----HHHHHHHHc---CC---CeEEEEeCh-HHHHHHHHHHH-------------------hCC-C-
Q 015038 63 IGRVVVDVGAGSG----ILSLFAAQA---GA---KHVYAVEAS-EMAEYARKLIA-------------------GNP-S- 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG----~ls~~~a~~---g~---~~V~gvD~s-~~~~~a~~~~~-------------------~n~-~- 110 (414)
+.-+|+..||+|| .+++.+... .. -+|+|.|+| .+++.|++-.- ..+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4458999999999 455656552 12 289999999 47788876210 000 0
Q ss_pred -----CCCcEEEEEccccc-ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 111 -----LGERITVIKGKVEE-VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 111 -----l~~~i~vi~~d~~~-~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+..+|+|...|+.+ .+..++||+|+|..+..++ ++.....+++.+.+.|+|||.+++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 13578899999888 3444799999997776655 455578899999999999999987644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.32 E-value=4e-06 Score=78.99 Aligned_cols=94 Identities=27% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~ 140 (414)
+..++||||+|.|..+..++.. .++|++.|.| .|....+ +.| ++++.. .++. .+.+||+|.|-.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~----~kg-----~~vl~~--~~w~~~~~~fDvIscLNv- 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS----KKG-----FTVLDI--DDWQQTDFKFDVISCLNV- 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH----hCC-----CeEEeh--hhhhccCCceEEEeehhh-
Confidence 4578999999999999999876 5579999999 4753333 222 344432 2232 2358999998433
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+..-..+..+++.+++.|+|+|++++...
T Consensus 161 --LDRc~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 161 --LDRCDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred --hhccCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33333478899999999999999987643
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.7e-06 Score=83.72 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=76.0
Q ss_pred CEEEEECCCcc----HHHHHHHHcC-----CCeEEEEeCh-HHHHHHHHHHH------------------h--C------
Q 015038 65 RVVVDVGAGSG----ILSLFAAQAG-----AKHVYAVEAS-EMAEYARKLIA------------------G--N------ 108 (414)
Q Consensus 65 ~~VLDiGcGtG----~ls~~~a~~g-----~~~V~gvD~s-~~~~~a~~~~~------------------~--n------ 108 (414)
-+|+..||+|| .+++.+.+.+ .-+|+|+|+| .+++.|++-+- . .
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 59999999999 4555565541 1379999999 58888876420 0 0
Q ss_pred ---CCCCCcEEEEEcccccccC--CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 109 ---PSLGERITVIKGKVEEVEL--PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 109 ---~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..+...|+|...|+.+.+. .++||+|+|..+..++. ......++..+.+.|+|||.+++...
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 0123567888888877432 47899999976665553 45578899999999999999876543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=81.32 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+....+.|.+.+...++..|||||+|.|.++..+++.+ ++|+++|+++ +++..++.+.. ..+++++.+|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh----cccceeeecchhccc
Confidence 34455667777766688999999999999999999988 6899999995 77777776552 357999999999987
Q ss_pred CCC----ceeEEEEcCCc
Q 015038 127 LPE----KADILISEPMG 140 (414)
Q Consensus 127 ~~~----~fDvIis~~~~ 140 (414)
.+. ....|+++.+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GGGHCSSSEEEEEEEETG
T ss_pred cHHhhcCCceEEEEEecc
Confidence 664 67889998775
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=8e-06 Score=80.23 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--------CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--------GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIK 119 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--------g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~ 119 (414)
....+.+...+...++.+|||.+||+|.+...+.+. ...+++|+|+++ ++..|+.++.-++.-..+..+..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 444556666666667779999999999998887762 445899999995 77778777654431123356888
Q ss_pred cccccccC---CCceeEEEEcCCcccc--CCh----------------hhHHHHHHHHHhccCCCeEEE
Q 015038 120 GKVEEVEL---PEKADILISEPMGTLL--VNE----------------RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 120 ~d~~~~~~---~~~fDvIis~~~~~~l--~~e----------------~~l~~~l~~~~r~LkpgG~li 167 (414)
+|...... ..+||+|+++|+.... ... ..--.++..+.+.|++||++.
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 88765433 2589999999985433 110 111246677789999999864
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.3e-06 Score=75.88 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc---
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--- 125 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--- 125 (414)
+.+.+.+.+.. .+.+|||||||||-.+..+|++ ..-+-.-.|.++ .....+..+...+ +.+-..-+..|+.+-
T Consensus 14 Il~vL~~~l~~-~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 14 ILEVLKQYLPD-SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHhCc-cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCc
Confidence 34445454432 3336999999999999988887 333556677774 3344444444433 322222333444332
Q ss_pred -c-----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 -E-----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 -~-----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ..+.||.|+|..+.|....+. .+.++..+.++|++||.+++.
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEe
Confidence 1 235899999988888776544 688999999999999999754
|
The function of this family is unknown. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=77.29 Aligned_cols=105 Identities=15% Similarity=0.001 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC--CCCCCcEEEEEcccccccCCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN--PSLGERITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n--~~l~~~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
...++||-||.|.|..+..+++... +|+.||+++ +++.+++.+... ..-+.|++++.. +.+ ...++||+||.+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 4578999999999999999999864 899999995 889998854431 112467888862 221 1136899999874
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
. .. +.+.+.++|.|+|||+++.+..+.+..+
T Consensus 148 ~----~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 148 E----PD----IHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred C----CC----hHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 3 22 4566788999999999999888766543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=74.28 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=62.0
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHH-------HHhCCCCCCcEEEEEccccc
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKL-------IAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~-------~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+.+.....++.+++|||||.|...+.+|. .+.++.+|||+.+ ..+.|+.. .+..+....++++.++|+.+
T Consensus 33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 344555566788999999999998776664 4888899999984 44444432 22233224578999999876
Q ss_pred ccCC----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 125 VELP----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 125 ~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.. ...|+|+++.. .+++.....+ ......||+|.++|
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~---~F~~~l~~~L-~~~~~~lk~G~~II 155 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNT---CFDPDLNLAL-AELLLELKPGARII 155 (205)
T ss_dssp HHHHHHHGHC-SEEEE--T---TT-HHHHHHH-HHHHTTS-TT-EEE
T ss_pred cHhHhhhhcCCCEEEEecc---ccCHHHHHHH-HHHHhcCCCCCEEE
Confidence 5321 35899998643 3444444444 56667789998876
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.4e-06 Score=76.03 Aligned_cols=105 Identities=27% Similarity=0.345 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEE-EcccccccC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVI-KGKVEEVEL- 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi-~~d~~~~~~- 127 (414)
+..++....-..++++|||+|+-||.++..+.+.||++|||+|.. ..+.. .++. +.++.++ ..+++.+..
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~----d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRN----DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhc----CCcEEEEecCChhhCCHH
Confidence 345565666678899999999999999999999999999999997 32211 1222 2345544 346665543
Q ss_pred --CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 --PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 --~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+..|+++|+..+.. +..++..+..+++|+|.+++
T Consensus 140 ~~~~~~d~~v~DvSFIS------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDVSFIS------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEeehhh------HHHHHHHHHHhcCCCceEEE
Confidence 257899999743222 67788888999999998764
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=75.30 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=70.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCC--eEEEEeCh-HHHHHHHHHHHhCCC-------C-CCcEEEEEcccccccCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAK--HVYAVEAS-EMAEYARKLIAGNPS-------L-GERITVIKGKVEEVELP 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~--~V~gvD~s-~~~~~a~~~~~~n~~-------l-~~~i~vi~~d~~~~~~~ 128 (414)
..+|.+.||+|+|||.|+.++++. |+. .+.|||.- +.++.+++++.+.-. + ..++.++.+|.+....+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 568999999999999999998865 432 34999986 688999998875420 1 24678889999887655
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+||.|.+.. .....++.+ ...|++||.+++
T Consensus 160 ~a~YDaIhvGA-----aa~~~pq~l----~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA-----AASELPQEL----LDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc-----CccccHHHH----HHhhccCCeEEE
Confidence 6899999832 112223444 456788887753
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.19 E-value=7e-06 Score=76.68 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=63.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
....+|.|+|||-+-++. .. ..+|+.+|+-. .+-.++.+|+..++++ +++|++|+.+..
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~svDvaV~CLSL 238 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------------VNERVIACDMRNVPLEDESVDVAVFCLSL 238 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec----------------CCCceeeccccCCcCccCcccEEEeeHhh
Confidence 345689999999988765 22 23699999742 1236788999999887 789999964321
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+..+ +..++.++.|+|++||.+++....
T Consensus 239 -Mgtn---~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 239 -MGTN---LADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred -hccc---HHHHHHHHHHHhccCceEEEEehh
Confidence 1122 788999999999999998765544
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=73.29 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=82.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-------CCCc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-------LPEK 130 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-------~~~~ 130 (414)
...++++||||.=||.-++..|.+ .-.+|+++|++ ...+.+.+..+..+ ..++|++++++..+.- ..+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence 357899999999999888888776 22479999999 57788888888776 8899999999886641 1368
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
||.++.+. +......+...+.++||+||+++++...++-
T Consensus 150 fDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 150 FDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 99999642 2222345667778999999999887654443
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.9e-06 Score=82.12 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=117.9
Q ss_pred CCceeEEEEcCCccc--cCChhh-HHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHhhhccccccccccccc
Q 015038 128 PEKADILISEPMGTL--LVNERM-LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDL 204 (414)
Q Consensus 128 ~~~fDvIis~~~~~~--l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~~~~~w~~~~~~G~d~ 204 (414)
+++-|+++.+++... .+.... +--....+...+-|+-.+.|..+.+++.|...+.++.... +...+.|||+
T Consensus 427 ~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S------~~G~~~GFDl 500 (636)
T KOG1501|consen 427 PDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIAS------DVGTVNGFDL 500 (636)
T ss_pred CCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcc------ccccccccee
Confidence 455688877765221 111000 0111234456788999999999999999998888865321 2468899999
Q ss_pred ccccccccc-cCCCCCeEee-----cCCccccCCceEEEEecCCCCcccccceeeeEEEEEeecceeeeEEEEEEEEecC
Q 015038 205 TPLYGSAFH-GYFSQPVVDA-----FDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDG 278 (414)
Q Consensus 205 ~~~~~~~~~-~~~~~p~v~~-----~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~f~~ 278 (414)
+-+.+.... .-++..+++. +....+.++..+++|+|....... .-.+.+.+.+.-|++..|++++|.|
T Consensus 501 ~~~Dei~~kA~~~~da~~~E~~LWEY~~~~~~d~~eIL~F~~~~~V~~Q------k~~V~i~~~~sS~A~~mWME~~~~~ 574 (636)
T KOG1501|consen 501 SFFDEISTKARTATDAIVDEQSLWEYAGIVKGDAVEILRFPIDGRVSSQ------KCVVNIDNMSSSNAIPMWMEWEFGG 574 (636)
T ss_pred eehhHHHHhhchhhhhhhccchhhhccCeecCCceeEEEeccCCccccc------eeEEEccCCCccccceeeEEeeeCc
Confidence 988764321 1233333332 556778889999999998765543 3456678999999999999999997
Q ss_pred CccceeecCC-----CCC---CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEE
Q 015038 279 STVQRWLTTA-----PGA---PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTL 335 (414)
Q Consensus 279 ~~~~~~lsT~-----P~~---~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~ 335 (414)
.+ |||+ |.. +..|.+|.+|+...- +...-+++....+.+ +..||.++.
T Consensus 575 ~n----LSTGLL~~~~~G~~~WN~~~KQ~VYF~~t~--L~~~ksl~~~~~F~~---~TGDI~~qF 630 (636)
T KOG1501|consen 575 IN----LSTGLLSISSAGVPEWNKGYKQGVYFPITA--LRNDKSLCLHALFDK---STGDINFQF 630 (636)
T ss_pred ee----ecccceeecCCCCcccCccccceeEEEhHH--hCCCceEEEEEEEcC---CCCceEEEe
Confidence 64 5554 332 246779999885322 222334444444322 455666654
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-06 Score=77.53 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=77.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
...++|||||.|.+...+...|..+++-+|.| .|++.++..- .+ +-.+....+|-+.+++. .++|+|++..-.|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp---~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DP---SIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CC---ceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 45899999999999999999899999999999 6998877641 11 23456677787777765 6899999977666
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+..+ +...+..++..|||+|.++-
T Consensus 149 W~Nd---LPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 149 WTND---LPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhcc---CchHHHHHHHhcCCCccchh
Confidence 6544 67777888999999998863
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-05 Score=71.79 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc-eeEEEEcCCc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK-ADILISEPMG 140 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~-fDvIis~~~~ 140 (414)
+++++|||+|.|.-++.+|-. ...+|+-+|.. .-+...+.....-+ + ++++++++.++++....+ ||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-L-ENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-C-CCeEEehhhHhhcccccccCcEEEeehcc
Confidence 589999999999988887743 33469999998 45555555555543 3 469999999999875444 9999997554
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. +..+..-+..++|+||.++
T Consensus 146 ~-------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 146 S-------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred c-------hHHHHHHHHHhcccCCcch
Confidence 3 4666777889999999875
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.3e-05 Score=79.83 Aligned_cols=117 Identities=26% Similarity=0.290 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
.+...+.+......++.+||+.||||.+++.+|+ ++++|+|||+++ .+..|++++..|+ . .+.+|+.|-.+++-.
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~Ng-i-sNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQING-I-SNATFIVGQAEDLFPS 446 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcC-c-cceeeeecchhhccch
Confidence 3445566777777789999999999999999987 577899999995 7799999999997 4 579999997777521
Q ss_pred ---C--Ccee-EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 128 ---P--EKAD-ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 128 ---~--~~fD-vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
+ ++-+ ++|.+++-..+ -..++.++.++-++--.++.+ ++.+.
T Consensus 447 l~~~~~~~~~~v~iiDPpR~Gl-----h~~~ik~l~~~~~~~rlvyvS-Cn~~t 494 (534)
T KOG2187|consen 447 LLTPCCDSETLVAIIDPPRKGL-----HMKVIKALRAYKNPRRLVYVS-CNPHT 494 (534)
T ss_pred hcccCCCCCceEEEECCCcccc-----cHHHHHHHHhccCccceEEEE-cCHHH
Confidence 1 2345 66777765443 244555555544454444443 44443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=76.97 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
+.+++.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ ++++.|++++.. .++++++++++.++. +
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHHHHH
Confidence 445556655678899999999999999999884 3689999999 588999887654 258999999998763 2
Q ss_pred CC---ceeEEEEcC
Q 015038 128 PE---KADILISEP 138 (414)
Q Consensus 128 ~~---~fDvIis~~ 138 (414)
++ ++|.|++++
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 22 799999864
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.7e-05 Score=71.42 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh----CC----------------------------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG----NP---------------------------- 109 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~----n~---------------------------- 109 (414)
.+.+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.+.. +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 346899999999999999999999 59999999 576433332221 00
Q ss_pred ------CCCCcEEEEEcccccccCC----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 110 ------SLGERITVIKGKVEEVELP----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 110 ------~l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
....++....||+.++-.+ ++||+|++. .++.....+-.+++.+.++|||||..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEE
Confidence 0123566677777776433 489999975 45555555788899999999999954
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.5e-05 Score=71.34 Aligned_cols=104 Identities=27% Similarity=0.280 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
..|...+...+|.+|||-|+|+|.++.+++++ .-.+++.+|..+ .++.|++-++..+ +++++++.+-|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccc
Confidence 55677778889999999999999999999997 335999999985 7899999999998 999999999999776443
Q ss_pred --CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeE
Q 015038 129 --EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 129 --~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
.++|.|+.+.+.-+. . +--+.+.||.+|.
T Consensus 174 ks~~aDaVFLDlPaPw~-------A-iPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPWE-------A-IPHAAKILKDEGG 204 (314)
T ss_pred cccccceEEEcCCChhh-------h-hhhhHHHhhhcCc
Confidence 579999987654332 1 2223447787774
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=71.17 Aligned_cols=89 Identities=22% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCC--EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhC------CC-CCCcEEEEEcccc
Q 015038 54 AVIENRADFIGR--VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGN------PS-LGERITVIKGKVE 123 (414)
Q Consensus 54 ai~~~~~~~~~~--~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n------~~-l~~~i~vi~~d~~ 123 (414)
.|.+.....++. +|||+-+|+|..++.++..|++ |+++|.++ ++...+.++... +. +..+++++++|..
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 445555555666 8999999999999999999996 99999996 556666666542 11 2257999999998
Q ss_pred ccc--CCCceeEEEEcCCcccc
Q 015038 124 EVE--LPEKADILISEPMGTLL 143 (414)
Q Consensus 124 ~~~--~~~~fDvIis~~~~~~l 143 (414)
++- .+..||+|+.+||...-
T Consensus 156 ~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHhhCCCCCcEEEECCCCCCC
Confidence 763 33579999999997653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.3e-05 Score=75.03 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~~~ 140 (414)
.+++++|||||++|.++..+++.|+ +|+|||..+|.... .. ..+|+.+.+|...+.. .+.+|+++|+...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD----TGQVEHLRADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC----CCCEEEEeccCcccCCCCCCCCEEEEeccc
Confidence 5788999999999999999999998 79999987765332 22 2479999998877765 5789999997542
Q ss_pred cccCChhhHHHHHHHHHhccCCC
Q 015038 141 TLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
. +..+.+-+.+||..|
T Consensus 281 ~-------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 K-------PARVAELMAQWLVNG 296 (357)
T ss_pred C-------HHHHHHHHHHHHhcC
Confidence 2 455556667788765
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=70.17 Aligned_cols=103 Identities=28% Similarity=0.388 Sum_probs=70.5
Q ss_pred EEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcccc
Q 015038 67 VVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLL 143 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l 143 (414)
|.||||--|.+++.+++.|. .+++++|+++ -++.|++++...+ +.++|+++.+|..+.-.+ +..|.|+...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEecCCHHH
Confidence 68999999999999999975 5899999995 7899999999987 899999999997664333 348998876665432
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
...++.+....++....++ +.|.....
T Consensus 80 -----I~~ILe~~~~~~~~~~~lI-------LqP~~~~~ 106 (205)
T PF04816_consen 80 -----IIEILEAGPEKLSSAKRLI-------LQPNTHAY 106 (205)
T ss_dssp -----HHHHHHHTGGGGTT--EEE-------EEESS-HH
T ss_pred -----HHHHHHhhHHHhccCCeEE-------EeCCCChH
Confidence 5566666666665544554 45655543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=79.67 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fDvIis~ 137 (414)
.+..+||||||.|.+...+|+. .-..++|+|+. +.+..|.+.+...+ + .|+.++..|+..+. .++++|.|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-I-TNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-C-CeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 4678999999999998888887 44579999998 55555555555554 4 46888888875442 23679999987
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.-+.-.. -.-..++..+.+.|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 765442211 11257788889999999998654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.3e-05 Score=73.25 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=74.8
Q ss_pred CCEEEEECCCcc----HHHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHh-----CC------------------
Q 015038 64 GRVVVDVGAGSG----ILSLFAAQAG------AKHVYAVEAS-EMAEYARKLIAG-----NP------------------ 109 (414)
Q Consensus 64 ~~~VLDiGcGtG----~ls~~~a~~g------~~~V~gvD~s-~~~~~a~~~~~~-----n~------------------ 109 (414)
.-+|+-+||+|| .+++.+.+.+ .-+|+|.|+| ..++.|+.-+-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 4566666653 2389999999 577877653211 00
Q ss_pred ----CCCCcEEEEEccccccc-CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 110 ----SLGERITVIKGKVEEVE-LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 110 ----~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+...|.|-..|+.+-. ..+.||+|+|-.+..++. +..-..++...+..|+|||.+++...
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 01234566666666554 557899999976665554 45567888999999999999987543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=71.44 Aligned_cols=95 Identities=28% Similarity=0.398 Sum_probs=60.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------C---CC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------L---PE 129 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~---~~ 129 (414)
++.+|||+||++|.++..+++.+ ..+|+|+|+.++. ....+..+.+|+.+.. + .+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999999997 5689999998651 1134666677765431 1 15
Q ss_pred ceeEEEEcCCccc----cCCh----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTL----LVNE----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~----l~~e----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++|+|+|+..... ..++ ......+..+.++|+|||.++.-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 8999999863111 1111 11233344556789999987653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.8e-05 Score=72.32 Aligned_cols=95 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCC-----CCEEEEECCCcc-HHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 50 TYYAAVIENRADFI-----GRVVVDVGAGSG-ILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 50 ~~~~ai~~~~~~~~-----~~~VLDiGcGtG-~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
.|...|...+.... .-++||||||.. +..+..++. |. +++|.|+++ .++.|++++..|..+.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 44455555443322 348999999975 666666665 54 799999995 8899999999994499999998764
Q ss_pred ccc-c----c-CCCceeEEEEcCCccccCC
Q 015038 122 VEE-V----E-LPEKADILISEPMGTLLVN 145 (414)
Q Consensus 122 ~~~-~----~-~~~~fDvIis~~~~~~l~~ 145 (414)
-.. + . ..+.||+.+|||+++--..
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred CccccchhhhcccceeeEEecCCccccChh
Confidence 322 1 1 1268999999999875443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=70.39 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+......+.+.+|||+|||.|.-...+... ...+++++|.| .|++.++..+.... .............+...-
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-NNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-ccccchhhhhhhcccccC
Confidence 344444556788899999999999766555443 45689999999 58898888776543 111111111111111111
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
...|+|++.....-+.+ .....+++.+.+.+++ -.+++..++
T Consensus 101 ~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred CCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 23499998666555655 5567777877777766 333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=73.05 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=88.5
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCC---CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc---CC-
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGA---KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE---LP- 128 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~---~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~- 128 (414)
..+...+|.+|||++++.|.=+..+++... ..|+|+|.++ -+...+++++..| .. ++.+++.|...+. ..
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~-nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VR-NVIVVNKDARRLAELLPGG 227 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-ceEEEeccccccccccccc
Confidence 345667889999999999998888887732 3579999994 7788888888876 43 3778888776542 12
Q ss_pred CceeEEEEcCCccc--cC----------Chh-------hHHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 129 EKADILISEPMGTL--LV----------NER-------MLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 129 ~~fDvIis~~~~~~--l~----------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
++||.|+.+.+-+. .. ... .-..+|..+.++|||||.++-+.|++. |.+.+..
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~--~eENE~v 299 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT--PEENEEV 299 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc--hhcCHHH
Confidence 36999998877332 11 011 124778889999999999999988844 4444443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.4e-05 Score=78.07 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcC---------CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG---------AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g---------~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
...+|||.|||+|.+...+++.. ...++|+|+++ .+..|+.++...+ ...+.+..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CCCceeeeccccccccccccc
Confidence 45689999999999988887642 14789999995 7788888876643 123556655543321
Q ss_pred CCCceeEEEEcCCccc
Q 015038 127 LPEKADILISEPMGTL 142 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~ 142 (414)
..++||+||+||+...
T Consensus 109 ~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 109 YLDLFDIVITNPPYGR 124 (524)
T ss_pred ccCcccEEEeCCCccc
Confidence 1258999999998543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=71.25 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=84.3
Q ss_pred CCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHH--H---hCCCCCCcEEEEEcccccccC--CCceeEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLI--A---GNPSLGERITVIKGKVEEVEL--PEKADIL 134 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~--~---~n~~l~~~i~vi~~d~~~~~~--~~~fDvI 134 (414)
..+||-+|.|.|.-...+.+.. ..+|+-||.++ |++.++++. + .+..-+.|++++..|+..+-. .++||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 3589999999999999999985 78999999995 998887432 2 222124689999999988732 3689999
Q ss_pred EEcCCccccCChh--hHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 135 ISEPMGTLLVNER--MLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 135 is~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
|.+.+..--+.-. .-..+..-+.|.|+++|.++.+.++.|..|
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC
Confidence 9876543211111 124555667899999999999988877655
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=70.76 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=76.1
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcccc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLL 143 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l 143 (414)
...+|+|.|.|..+..+... ..+|-+++.+ +.+..++.... . .|+.+.+|+..- .| +-|+|+.-|+.|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~-----gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P-----GVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C-----Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence 58899999999999888884 5569999998 55544444432 2 288888888775 44 56799999999998
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++. ...+|+++++.|+|||.+++-..
T Consensus 250 tDed-cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDED-CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHH-HHHHHHHHHHhCCCCCEEEEEec
Confidence 8766 77899999999999999876544
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=68.18 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=62.4
Q ss_pred CCEEEEECCCcc-HHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 64 GRVVVDVGAGSG-ILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG-~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
+++|+=||||.= ..++.+++. + ...|+++|+++ .++.+++.+....+++.+++++.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999974 445566654 3 23699999995 67888888873333788999999999877543 5899998643
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+-.. ....-..++..+.+.++||+.++..
T Consensus 201 lVg~--~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGM--DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hccc--ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 3211 1223578889999999999998755
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00039 Score=58.14 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=65.2
Q ss_pred EEEECCCccHHHHHHHHcCC--CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc--ccCCC--ceeEEEEcCC
Q 015038 67 VVDVGAGSGILSLFAAQAGA--KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE--VELPE--KADILISEPM 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~--~~~~~--~fDvIis~~~ 139 (414)
++|+|||+|... .++.... ..++++|.++ ++..++..... ... ..+.++.++... .+... .+|++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-GLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-CceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999977 4444332 3799999994 66664444322 111 116788888776 45554 7999944333
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.++. . ....+..+.+.|+|+|.++.....
T Consensus 129 ~~~~-~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLL-P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcC-C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 2222 2 577788889999999998766543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=65.91 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------CC-Cc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------LP-EK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~~-~~ 130 (414)
.++.+|+|+||-.|.++..+++. +. .+|+|+|+.+|- .-.+|.++++|+++-+ ++ .+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 45689999999999999999987 32 259999998752 2234999999998753 12 35
Q ss_pred eeEEEEcCCc----cccCCh----hhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMG----TLLVNE----RMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~----~~l~~e----~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+|+|++.- +...++ ......+.-+..+|+|||.++.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999997642 221111 1134455667789999999864
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.9e-05 Score=79.18 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCC--CCC--CEEEEECCCccHHHHHHHHcCCCeEEEEeCh---H-HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 49 GTYYAAVIENRAD--FIG--RVVVDVGAGSGILSLFAAQAGAKHVYAVEAS---E-MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 49 ~~~~~ai~~~~~~--~~~--~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s---~-~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
..|.+.|.+.+.. ..+ .++||+|||+|.++..+...+.. +..+-.+ + .+..|.++ | +..-+.++
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleR----G-vpa~~~~~-- 170 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALER----G-VPAMIGVL-- 170 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhc----C-cchhhhhh--
Confidence 3566666666544 222 37899999999999999988763 4444333 1 23333332 2 22212111
Q ss_pred ccccccCC-CceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 121 KVEEVELP-EKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 121 d~~~~~~~-~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
-...++.+ ..||+|.|.-... ...+. ..+|-++.|+|+|||.++.+...++
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~---g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPND---GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcc---cceeehhhhhhccCceEEecCCccc
Confidence 12345555 6899999843222 22222 3467788999999999998877776
|
; GO: 0008168 methyltransferase activity |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.5e-05 Score=64.04 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=42.5
Q ss_pred EEECCCccHHHHHHHHc----CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-CceeEEEEcCCc
Q 015038 68 VDVGAGSGILSLFAAQA----GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-EKADILISEPMG 140 (414)
Q Consensus 68 LDiGcGtG~ls~~~a~~----g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-~~fDvIis~~~~ 140 (414)
||||+..|..+..++++ +..+++++|..+..+.+++.+++.+ +..+++++.++..+. ..+ +++|+|+.+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999888777764 2237999999864444455554433 667899999999765 223 689999976422
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .......+..+.+.|+|||++++.
T Consensus 80 ~----~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 80 S----YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 1 122445567788999999999875
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00054 Score=63.34 Aligned_cols=113 Identities=24% Similarity=0.259 Sum_probs=74.0
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..+.++|..- ....+|.+||-+|+.+|.....++.. | ...|||||.|+ ..+..-...++. .||--+-+|+
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DA 131 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDA 131 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-T
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccC
Confidence 3455556543 34567899999999999998888875 4 45899999995 333333333332 4688888898
Q ss_pred cccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.... +-+.+|+|+++.. ...+.+-++.++..+||+||.+++..
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 7642 2268999998643 23446777888889999999987653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=62.16 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=56.0
Q ss_pred CCCCEEEEECCCccHHHHHHHH-----cCCCeEEEEeCh-HHHHHHHHHHHhCC-CCCCcEEEEEcccccccCCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQ-----AGAKHVYAVEAS-EMAEYARKLIAGNP-SLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~-----~g~~~V~gvD~s-~~~~~a~~~~~~n~-~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.+...|+|+|||.|.|+..++. ....+|+|||.+ ...+.+.++.+..+ .+..++.+..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 5667999999999999999998 544589999999 47777777766542 1235677777777665445667788
Q ss_pred EE
Q 015038 135 IS 136 (414)
Q Consensus 135 is 136 (414)
++
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=67.65 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=84.2
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCcee
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKAD 132 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fD 132 (414)
+...++..|||+++|.|.-+..++.. +...|+|+|++ .-+...+.++...| . .++.++..|..... ....||
T Consensus 81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~-~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-V-FNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-C-ceEEEEeeccccccccccccccc
Confidence 45568889999999999998888876 24689999999 57777788888765 3 46788878887762 234699
Q ss_pred EEEEcCCcccc----CCh--------hh-------HHHHHHHHHhcc----CCCeEEEccccee
Q 015038 133 ILISEPMGTLL----VNE--------RM-------LETYVIARDRFL----VPMGKMFPSVGRI 173 (414)
Q Consensus 133 vIis~~~~~~l----~~e--------~~-------l~~~l~~~~r~L----kpgG~lip~~~~~ 173 (414)
.|+.+.+-+.. .+. .. -..+++.+.+++ ||||+++-+.|++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99998773322 111 11 246788889999 9999999888773
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=62.53 Aligned_cols=57 Identities=33% Similarity=0.423 Sum_probs=48.1
Q ss_pred EEEEECCCccHHHHHHHHcCCC-eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~-~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
+|||+|||.|..+..+++.+.. +|+++|+++ +.+.++++++.|+ +. ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeeeeC
Confidence 4899999999999999988654 899999995 8899999998876 43 58888877765
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.6e-05 Score=69.72 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCC-CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADF-IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~-~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+....+|....... ...+|+|.-||.|..++..|..|. .|++||+++ -+..|+.+++-.| ..++|++++||+.++-
T Consensus 79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLA 156 (263)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHH
Confidence 33444444433222 556899999999988888887777 699999996 7799999999887 7889999999998863
Q ss_pred ----CC-CceeEEEEcCC
Q 015038 127 ----LP-EKADILISEPM 139 (414)
Q Consensus 127 ----~~-~~fDvIis~~~ 139 (414)
.. ..+|+|+..++
T Consensus 157 ~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 157 SKLKADKIKYDCVFLSPP 174 (263)
T ss_pred HHHhhhhheeeeeecCCC
Confidence 22 45778886655
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=68.16 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCC--------------------------CCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPS--------------------------LGE 113 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~--------------------------l~~ 113 (414)
..++.++||||||.-+.....|..-+++|+..|..+ ..+..++.+++.+. +..
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 456789999999997776555555567899999974 55554544433211 011
Q ss_pred cE-EEEEccccccc-------CCCceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 114 RI-TVIKGKVEEVE-------LPEKADILISEPMGT-LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 ~i-~vi~~d~~~~~-------~~~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.| .++.+|+.+.+ +|.+||+|++..... ...+.......++.+.++|||||.++..
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 23 37778887643 234699999865433 2335566778889999999999999754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=57.95 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
+.++++|+|||++.|.-++.++-.||++|+++|+++ +.+..+++.+.+. .-++..... +++.. +.||+.+.+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn-I~DK~v~~~----eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN-ICDKAVMKG----EWNGEYEDVDIFVMDC 100 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe-eeeceeecc----cccccCCCcceEEEEc
Confidence 468999999999999999999999999999999996 7788888877664 323222221 23222 6789888643
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0028 Score=62.48 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=72.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C-CCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEcccccc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G-AKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEV 125 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~ 125 (414)
..|.+.+ .++..++|+|||+|.-+..+.++ + ..++++||+| ++++.+.+.+.... .. -.+.-+.+|..+.
T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-FSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-CCCeEEEEEEecHHHH
Confidence 4444444 34568999999999765554443 1 3479999999 68888888776221 22 2344488888653
Q ss_pred ----cC---CCceeEEEEcCCccccCC--hhhHHHHHHHHHh-ccCCCeEEEccc
Q 015038 126 ----EL---PEKADILISEPMGTLLVN--ERMLETYVIARDR-FLVPMGKMFPSV 170 (414)
Q Consensus 126 ----~~---~~~fDvIis~~~~~~l~~--e~~l~~~l~~~~r-~LkpgG~lip~~ 170 (414)
+. +....+++. +|+.+.| ......+++.+.+ .|+|||.+++..
T Consensus 145 l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 11 133566665 4443333 3345678899988 999999988643
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00095 Score=61.09 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=74.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-CceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-EKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-~~fDvIis~ 137 (414)
.++.+||+||-|-|+..-++.++...+-+.||..+ .++..+...-. -.++|.++.+-.++.- ++ +.||-|+-+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~---ek~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR---EKENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc---cccceEEEecchHhhhccccccCcceeEee
Confidence 68899999999999999999888777788999985 66655554222 2367888888877763 23 579999976
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..+.+ -+.+..+.+.+.|+|||+|++-
T Consensus 177 Ty~e~---yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 177 TYSEL---YEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred chhhH---HHHHHHHHHHHhhhcCCCceEE
Confidence 54333 2236667778889999999983
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00013 Score=63.76 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCC-CCCcEEEEEccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPS-LGERITVIKGKVEE 124 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~-l~~~i~vi~~d~~~ 124 (414)
+++...+++......++.||++|.|- |.-++++|.. ..+.|...|-++ .++..++....|.. -..++.++.-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 33444455555556678999999995 7777777654 556899999994 66777776655520 11233333333222
Q ss_pred c---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 125 V---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 125 ~---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
- .....||+|++. .+++-.+..+.+.+.+.++|+|.|..+ ..+|-....+
T Consensus 95 aqsq~eq~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~Al------~fsPRRg~sL 147 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGRAL------LFSPRRGQSL 147 (201)
T ss_pred hHHHHhhCcccEEEec---cchhHHHHHHHHHHHHHHHhCccccee------EecCcccchH
Confidence 1 122589999983 233334447889999999999999853 3455544433
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0013 Score=66.47 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCC-cEEEEEccccccc--CCCceeEEEEc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGE-RITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~-~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
+-+|||.=+|+|+=++..+.. +..+|++-|+|+ .++..++|++.|+ +.+ ++++.+.|+..+- ..+.||+|=.+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 458999999999999888876 678999999995 7799999999998 776 7999999988764 45789999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
|+|+- ..+++.+.+.++.||.+.++...
T Consensus 129 PfGSp-------~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 129 PFGSP-------APFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CCCCc-------cHhHHHHHHHhhcCCEEEEeccc
Confidence 87763 55677778889999999876543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0028 Score=57.55 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=78.0
Q ss_pred HHHHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 49 GTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 49 ~~~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
..+.++|+.- .+..++.+||=+|+-+|......+.. |...+||||.|+ +....-..+.+. .||--+.+|+.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~ 134 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDAR 134 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccC
Confidence 4455566553 34567899999999999988888875 656799999983 333222222221 35777888887
Q ss_pred ccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 124 EVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 124 ~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
... +-+.+|+|+.+. ....+.+-+..++..+||+||.+++..
T Consensus 135 ~P~~Y~~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 135 KPEKYRHLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred CcHHhhhhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 642 126799999853 234456777888999999999776653
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00058 Score=68.34 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
+++..++|+|||.|......+..+..+++|++.++ .+..+........ +.++..++.+|+...+.+ ..||.+-+.-.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 45668999999999999999988766899999984 4444444333332 555566677888777665 57999988655
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+..+ +..++.++.|.+||||.++..
T Consensus 188 ~~~~~~---~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 188 VCHAPD---LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCCc---HHHHHHHHhcccCCCceEEeH
Confidence 666555 788889999999999998643
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=61.09 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=64.9
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEEEcCCc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILISEPMG 140 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~ 140 (414)
-++|||||=+...... ..+.-.|+.||+++ ..-.+.+.|+.+.++| ++||+|++.++.
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE
Confidence 5899999976544322 23444699999974 1124677888887654 689999999999
Q ss_pred cccCChhhHHHHHHHHHhccCCCeE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
.+++.......++..+.++|+|+|.
T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 9999988888999999999999999
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=55.73 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
++..+...+..+.+|+|+|.|...+.+++.|...-+|+|+++ .+.+++-..-..+ ...+..+...|+.++++..-=.+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~RkdlwK~dl~dy~~v 142 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRRKDLWKVDLRDYRNV 142 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhhhhhhhccccccceE
Confidence 344454455568999999999999999999988899999998 5577777666665 77889999999988776532223
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|. .-|+++..+-.++..-|..|..++-..
T Consensus 143 viF-------gaes~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 143 VIF-------GAESVMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred EEe-------ehHHHHhhhHHHHHhhCcCCCeEEEEe
Confidence 331 124445555556655677777776443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0034 Score=59.94 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCCCC-CEEEEECCCc--cHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIENRADFIG-RVVVDVGAGS--GILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~-~~VLDiGcGt--G~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..|.....+.+....| ...||||||- -.....+|+. ...+|+-||.++ .+..++..+..+. ..+..++.+|+
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~ 130 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--T
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCC
Confidence 3444444444433323 5799999994 3345666654 445899999998 5588888887764 23589999999
Q ss_pred cccc-------------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 123 EEVE-------------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 123 ~~~~-------------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+.. +.+.+ .++...+.|++.++..+..++..+...|.||..++++..+
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 8752 11233 3444556788888778999999999999999999887554
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00038 Score=66.36 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=73.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
.+..++|+|||.|-.... .....++|+|++ ..+..|++. + ...+..+|+..++.+ ..||.+++-.+.
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~---~-----~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS---G-----GDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC---C-----CceeehhhhhcCCCCCCccccchhhhhh
Confidence 478999999999865321 133368999998 466655542 1 125777888887765 689999998899
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|++........+++++.|.|+|||.+.+
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 9998888788999999999999998754
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=64.73 Aligned_cols=130 Identities=19% Similarity=0.158 Sum_probs=74.0
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEE
Q 015038 39 QNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERIT 116 (414)
Q Consensus 39 ~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~ 116 (414)
..|...+..-..-...+.....++..+++||+|.|.|.-...+-.. ..+.++.+|.|+.+...-.-+..|- ...+..
T Consensus 89 s~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-~t~~td 167 (484)
T COG5459 89 SRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-STEKTD 167 (484)
T ss_pred HhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-ccccCC
Confidence 3444444333333445555567888899999999998765554443 2346888999986655444444442 222223
Q ss_pred EEEccccc----ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 117 VIKGKVEE----VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 117 vi~~d~~~----~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+.. ++..+.|++++..--.-...++..+...++.+..++.|||.+++.
T Consensus 168 ~r~s~vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 168 WRASDVTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred CCCCccchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence 33333332 222256777764111111123443555778888999999998764
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.006 Score=56.27 Aligned_cols=93 Identities=26% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~fDvIis~~~ 139 (414)
.+.++.||||--|.|+..+.+.+ +..+++.|+++ -++.|.+++.+++ +.+++++..+|.... ...+.+|+|+...|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 34559999999999999999874 56899999995 7899999999997 899999999998554 33358999998777
Q ss_pred ccccCChhhHHHHHHHHHhccC
Q 015038 140 GTLLVNERMLETYVIARDRFLV 161 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~Lk 161 (414)
|..+ +..++.+..+.|+
T Consensus 95 GG~l-----I~~ILee~~~~l~ 111 (226)
T COG2384 95 GGTL-----IREILEEGKEKLK 111 (226)
T ss_pred cHHH-----HHHHHHHhhhhhc
Confidence 6543 4555555555555
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.013 Score=54.95 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.+++....+..|++||-+|-+. ..|+.+|.. ..++|+.+|+++ +++..++.+++.+ + +|+.+..|+++--+
T Consensus 31 ~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l--~i~~~~~DlR~~LP 106 (243)
T PF01861_consen 31 LRRAALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-L--PIEAVHYDLRDPLP 106 (243)
T ss_dssp HHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---
T ss_pred HHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-C--ceEEEEecccccCC
Confidence 3345555666678899999999776 445555543 456899999995 8888888888765 4 39999999987422
Q ss_pred ---CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCe-EEEc
Q 015038 128 ---PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMG-KMFP 168 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~lip 168 (414)
.++||+++++|+... ..+.-++......||..| ..++
T Consensus 107 ~~~~~~fD~f~TDPPyT~----~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 107 EELRGKFDVFFTDPPYTP----EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp TTTSS-BSEEEE---SSH----HHHHHHHHHHHHTB-STT-EEEE
T ss_pred HHHhcCCCEEEeCCCCCH----HHHHHHHHHHHHHhCCCCceEEE
Confidence 278999999998654 236777777778888666 4443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00034 Score=66.94 Aligned_cols=95 Identities=29% Similarity=0.347 Sum_probs=73.4
Q ss_pred CCCEEEEECCCccHHHH-HHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSL-FAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~-~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.+.+|+|+-+|-|.+++ ++..+||+.|+|+|.++ .++..+++++.|+ ..++..++.+|-+...+....|-|...++-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R~~~~~~~AdrVnLGLlP 272 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNRNPKPRLRADRVNLGLLP 272 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhccccccCccccchheeecccc
Confidence 34789999999999999 89999999999999996 7788899999887 778888999998887777788888853322
Q ss_pred cccCChhhHHHHHHHHHhccCCCeE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGK 165 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~ 165 (414)
+ .+..... +.+.|||.|-
T Consensus 273 S---se~~W~~----A~k~Lk~egg 290 (351)
T KOG1227|consen 273 S---SEQGWPT----AIKALKPEGG 290 (351)
T ss_pred c---cccchHH----HHHHhhhcCC
Confidence 2 2222332 3366777665
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0058 Score=52.72 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=56.2
Q ss_pred eEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CC-ceeEEEEcCCccccCC-------hhhHHHHHHHH
Q 015038 88 HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PE-KADILISEPMGTLLVN-------ERMLETYVIAR 156 (414)
Q Consensus 88 ~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~-~fDvIis~~~~~~l~~-------e~~l~~~l~~~ 156 (414)
+|+|+|+- +.++.+++++.+.+ +.++++++..+-+.+.. ++ ++|+++.|+ |+.-.+ ...--..++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 69999998 57799999999987 77899999998877643 34 899999873 332211 11123445777
Q ss_pred HhccCCCeEEEcccce
Q 015038 157 DRFLVPMGKMFPSVGR 172 (414)
Q Consensus 157 ~r~LkpgG~lip~~~~ 172 (414)
.++|+|||++.+..+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 8899999999765443
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0044 Score=58.14 Aligned_cols=87 Identities=26% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHhcCCCCC--CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HH---HHHHHHHHhCCCC----CCcEEEEEccccc
Q 015038 55 VIENRADFIG--RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MA---EYARKLIAGNPSL----GERITVIKGKVEE 124 (414)
Q Consensus 55 i~~~~~~~~~--~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~---~~a~~~~~~n~~l----~~~i~vi~~d~~~ 124 (414)
+.+.....++ .+|||.-+|-|.-++.+|..|+ +|+++|.|+ ++ ..+-++....... ..+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 4444443444 3899999999999999998887 599999997 33 3333344443212 1489999999988
Q ss_pred cc--CCCceeEEEEcCCccc
Q 015038 125 VE--LPEKADILISEPMGTL 142 (414)
Q Consensus 125 ~~--~~~~fDvIis~~~~~~ 142 (414)
+- ...+||+|..+||+..
T Consensus 144 ~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HCCCHSS--SEEEE--S---
T ss_pred HHhhcCCCCCEEEECCCCCC
Confidence 62 2368999999999765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0017 Score=63.41 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=62.6
Q ss_pred HHHHhc-CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHH-------HHHHHHHhCCCCCCcEEEEEccccc
Q 015038 54 AVIENR-ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAE-------YARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 54 ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~-------~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
.+..+. ...+|+.|+|--.|||.+...+|.-|+ .|+|.|++ .++. -.+.+++..+..+.-+.++.+|...
T Consensus 198 li~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 198 LIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 344433 346789999999999999999999998 69999999 5554 2355666655333346778888876
Q ss_pred ccCC--CceeEEEEcCC
Q 015038 125 VELP--EKADILISEPM 139 (414)
Q Consensus 125 ~~~~--~~fDvIis~~~ 139 (414)
-... ..||.|||+|+
T Consensus 277 ~~~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVCDPP 293 (421)
T ss_pred cchhhcceeeEEEeCCC
Confidence 5432 58999999988
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.01 Score=59.46 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=82.5
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCcee
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKAD 132 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fD 132 (414)
+...++.+|||++|-.|.=+.++|.. +-..|+|.|.+ .-+...+.++...| . .+..+.+.|..+++ .+.+||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-v-~ntiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-V-TNTIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-C-CceEEEccCcccccccccCcccc
Confidence 45568899999999999777666654 44579999999 57777788887765 3 45667777887653 335899
Q ss_pred EEEEcCCccc--cCCh-----------------hhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 133 ILISEPMGTL--LVNE-----------------RMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 133 vIis~~~~~~--l~~e-----------------~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
-|+.+.+-+. +... ..-..++..+..++++||+++-+.|++-.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 9998766443 2211 11246667777899999999998888543
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0095 Score=58.24 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=64.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L- 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~- 127 (414)
+.+++.+...++..++|.=+|.|..+..+++. +..+|+|+|.++ ++..|++++.. ..+++++++++..++. +
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHHHHH
Confidence 44555565667889999999999999999886 446899999995 77888888765 3468999999988763 1
Q ss_pred --C-CceeEEEEcC
Q 015038 128 --P-EKADILISEP 138 (414)
Q Consensus 128 --~-~~fDvIis~~ 138 (414)
. .++|.|+.++
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 4699999864
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.018 Score=59.04 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=73.5
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHH-HHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYAR-KLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~-~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
-++|-+|||.-.++..+-+.|...|+.+|.|+.+ +... .+.+. ..-+.+...|+....++ ++||+|+-...+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 3899999999999999999999999999999633 3332 22222 23478888999888776 7999999866544
Q ss_pred ccC-Chh------hHHHHHHHHHhccCCCeEEE
Q 015038 142 LLV-NER------MLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 142 ~l~-~e~------~l~~~l~~~~r~LkpgG~li 167 (414)
.+. ++. .....+..+.|+|++||+.+
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 332 222 23456788899999999965
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0084 Score=57.95 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhcCCCC-------CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHH--HhCC-C-----
Q 015038 47 RTGTYYAAVIENRADFI-------GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLI--AGNP-S----- 110 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~-------~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~--~~n~-~----- 110 (414)
|...|...|.+.-..++ .-+||--|||.|.|+..++..|.+ +-|-|.|- |+-...-.+ .+.. .
T Consensus 127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 44455444444433333 347999999999999999999985 77888884 542222111 1100 0
Q ss_pred ------------------------------CCCcEEEEEcccccccCC----CceeEEEEcCCccccCChhhHHHHHHHH
Q 015038 111 ------------------------------LGERITVIKGKVEEVELP----EKADILISEPMGTLLVNERMLETYVIAR 156 (414)
Q Consensus 111 ------------------------------l~~~i~vi~~d~~~~~~~----~~fDvIis~~~~~~l~~e~~l~~~l~~~ 156 (414)
..+...+..||+.++-.. +.+|+|+... ++......-.+++.+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~tI 282 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYIDTI 282 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHHHH
Confidence 001122233555544222 3699999753 344444466788999
Q ss_pred HhccCCCeEEE
Q 015038 157 DRFLVPMGKMF 167 (414)
Q Consensus 157 ~r~LkpgG~li 167 (414)
.+.|||||+.+
T Consensus 283 ~~iLk~GGvWi 293 (369)
T KOG2798|consen 283 YKILKPGGVWI 293 (369)
T ss_pred HHhccCCcEEE
Confidence 99999999874
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0037 Score=56.41 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHH-----HHHHH-HhCCCCCCcEEEEEccccccc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEY-----ARKLI-AGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~-----a~~~~-~~n~~l~~~i~vi~~d~~~~~ 126 (414)
++......++.+|+|+=.|.|.++..++.. |+ ..||+.-..+.... .+.+. .... ...+++++-.+...+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCCcccccC
Confidence 334455678899999999999999998876 43 37888766543211 11111 1111 2345666666666666
Q ss_pred CCCceeEEEEcCCccccC----ChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 127 LPEKADILISEPMGTLLV----NERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+++.|++..+...|-+. .......+..++.+.|||||++.+..+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 667888887654433222 2344678888999999999999877655
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=53.80 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-----CCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-----GAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-----g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
+|...|-+. +++.|+|+|.-.|.-+++.|.. +..+|+|||++ . ....| .+..+ +..+|++++||.
T Consensus 23 ~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a---~e~hp-~~~rI~~i~Gds 94 (206)
T PF04989_consen 23 AYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA---IESHP-MSPRITFIQGDS 94 (206)
T ss_dssp HHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G---GGG-----TTEEEEES-S
T ss_pred HHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH---Hhhcc-ccCceEEEECCC
Confidence 354445443 6789999999998777666542 44689999996 3 22222 22333 668999999998
Q ss_pred ccccC---------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVEL---------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~~---------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+... +....+|+-+.- |. .+. ....|+....++++|+++++..
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~-H~--~~h-vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSS-HT--HEH-VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS-------SS-HHHHHHHHHHT--TT-EEEETS
T ss_pred CCHHHHHHHHHhhccCCceEEEECCC-cc--HHH-HHHHHHHhCccCCCCCEEEEEe
Confidence 76521 123446665432 21 122 3344466889999999987653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00092 Score=60.80 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCC--CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRAD--FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
+.|++.+....+. ..+.++||+|+|.|-.+..++.. ..+|+|.|.| .|....+++ + ..++. .++-.
T Consensus 96 ~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk---~------ynVl~-~~ew~ 164 (288)
T KOG3987|consen 96 EQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK---N------YNVLT-EIEWL 164 (288)
T ss_pred HHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc---C------Cceee-ehhhh
Confidence 3444444433222 23479999999999999887764 4579999999 587655543 1 12221 11111
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCC-CeEEEccc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVP-MGKMFPSV 170 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkp-gG~lip~~ 170 (414)
...-++|+|.|-.+..-.. .+-.+++.+...|+| +|.+|...
T Consensus 165 ~t~~k~dli~clNlLDRc~---~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 165 QTDVKLDLILCLNLLDRCF---DPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcCceeehHHHHHHHHhhc---ChHHHHHHHHHHhccCCCcEEEEE
Confidence 1224799999833222212 256778888889999 88887654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0097 Score=53.49 Aligned_cols=94 Identities=27% Similarity=0.393 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEc-cccccc--------CC-C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG-KVEEVE--------LP-E 129 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~--------~~-~ 129 (414)
.++.+|||+||..|.++..+.+. +...|.|||+-+.. ....++++.+ |+.+.. +| .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 46889999999999999998886 34579999985421 1123566666 666532 23 5
Q ss_pred ceeEEEEcCC----ccccCC-hhhH---HHHHHHHHhccCCCeEEE
Q 015038 130 KADILISEPM----GTLLVN-ERML---ETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 130 ~fDvIis~~~----~~~l~~-e~~l---~~~l~~~~r~LkpgG~li 167 (414)
++|+|+|+.. |.-+.+ .... .+++.-....++|+|.++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 7999999753 211111 1111 223344456788999886
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=53.83 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhC----CCCCCcEEEEEcccccc---c-CCCc-eeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGN----PSLGERITVIKGKVEEV---E-LPEK-ADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n----~~l~~~i~vi~~d~~~~---~-~~~~-fDv 133 (414)
+..+||++|+|+|.-++.+|..+...|..-|........+.+...| +.++..+.+..-+.... . .+.. +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 3568999999999999999886555788888875333332222221 11333444443333221 1 1123 899
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
|++.- .+..++..+.+...+..+|..+|.+
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~i 195 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGTI 195 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCeE
Confidence 99743 3334455666777777888888844
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0068 Score=58.00 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHH-------HHHHHH--hCCCCCCcEEEEEcccccccC--C
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEY-------ARKLIA--GNPSLGERITVIKGKVEEVEL--P 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~-------a~~~~~--~n~~l~~~i~vi~~d~~~~~~--~ 128 (414)
.+.+++|||+|||+|+.++.+...|+..+...|.| +.++. +...+. .+. ...-..+++.+..++.. .
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e-~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKE-NHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhh-cccceeccccccccchhhhc
Confidence 46789999999999999999999987789998888 44311 011110 000 11123333332222221 1
Q ss_pred C--ceeEEEEcCCccccCChhhHHHH-HHHHHhccCCCeEEEc
Q 015038 129 E--KADILISEPMGTLLVNERMLETY-VIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 ~--~fDvIis~~~~~~l~~e~~l~~~-l~~~~r~LkpgG~lip 168 (414)
+ .||+|.+.-..+...+ ...+ ...+..+++++|+++.
T Consensus 193 ~~~~ydlIlsSetiy~~~~---~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDS---LAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred cccchhhhhhhhhhhCcch---hhhhHhhhhhhcCCccchhhh
Confidence 3 7888887544444333 3333 4556678899998753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.044 Score=51.78 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
...+|+|||||.=.+++.+.... ...++|+|++ .+++.....+... ....++...|...-.+++..|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l---~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL---GVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT---T-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh---CCCcceeEeeeeccCCCCCcchhhH
Confidence 36799999999998888766542 2389999999 5888888877764 3456777778877666688999986
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.022 Score=55.08 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCC
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPM 139 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~ 139 (414)
+|+|+.||.|.++..+.++|.+.|+++|+++ .++..+.+.. . .++.+|+.++.. ...+|+++..++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~------~--~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP------N--KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC------C--CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6899999999999999999998999999996 4455454432 1 266778877653 357999998876
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.055 Score=54.19 Aligned_cols=94 Identities=28% Similarity=0.299 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc-c----ccccCCCceeE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK-V----EEVELPEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d-~----~~~~~~~~fDv 133 (414)
.++.+|+-+|||. |+++..+++. |+++|+++|.+ .-++.|++.... +.+.....+ . .+......+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCCE
Confidence 4455999999998 9998888776 88999999998 477888774321 111111111 1 11111236999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++= ..+ . ...+..+.+.++|+|.+..-
T Consensus 242 vie-~~G----~----~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 242 VIE-AVG----S----PPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEE-CCC----C----HHHHHHHHHHhcCCCEEEEE
Confidence 983 223 1 23445566889999998643
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.095 Score=54.93 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G----AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g----~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
....+.|.+.+...+..+|+|..||+|.+...+++. + ...++|.|++ .....|+.++--++ ....+....+|.
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~dt 250 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGDT 250 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCcccccccccc
Confidence 344556666665556679999999999887766654 2 2469999998 58889998887765 433455555554
Q ss_pred cccc------CCCceeEEEEcCCcc
Q 015038 123 EEVE------LPEKADILISEPMGT 141 (414)
Q Consensus 123 ~~~~------~~~~fDvIis~~~~~ 141 (414)
..-+ ..++||.|+++|+..
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCC
Confidence 3322 125799999999864
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.034 Score=55.16 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEPM 139 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~ 139 (414)
..+|||.-+|||+=++.++.. +..+|+.-|+|+ ..+.+++|++.|. ..+..+++.|+..+-. ...||+|=.+|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~--~~~~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS--GEDAEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC--cccceeecchHHHHHHhcCCCccEEecCCC
Confidence 789999999999999888875 555899999996 7799999999883 3457777788766533 378999998888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+-. .+++++.+.++.||++-++..
T Consensus 131 GSPa-------PFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 131 GSPA-------PFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCc-------hHHHHHHHHhhcCCEEEEEec
Confidence 7753 455666778888999876643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.018 Score=59.17 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=64.0
Q ss_pred CEEEEECCCccHHHHHHHHcCCC--eEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEcCCcc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAK--HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISEPMGT 141 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~--~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~~~~~ 141 (414)
.+|+|..+|.|.++..+...+.- .|+-+...+.+. .+-..| + |-+.+.=.+.+. .|..||+|.++.+.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~----vIydRG-L---IG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLP----VIYDRG-L---IGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcch----hhhhcc-c---chhccchhhccCCCCcchhheehhhhhh
Confidence 58999999999999888776431 122221111111 111112 2 223332233332 468999999988877
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
...+.-.++.++-++.|.|+|+|.+++...
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 766666688999999999999999987543
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.047 Score=51.05 Aligned_cols=105 Identities=22% Similarity=0.184 Sum_probs=65.7
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCce
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKA 131 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~f 131 (414)
++...++.+||=+|+++|......+.. |. .-|||||.|+-.-.-.-++++ -..+|.-|..|++... +-.-+
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeeccCCCchheeeeeeeE
Confidence 455678999999999999887777765 32 369999998532111111111 1134556666766431 11368
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++..- ......+.-++..+||+||.++++.
T Consensus 228 DvIFaDvaq-----pdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 228 DVIFADVAQ-----PDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEeccCCC-----chhhhhhhhhhhhhhccCCeEEEEE
Confidence 999886432 2223444455678999999998764
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.17 Score=50.20 Aligned_cols=125 Identities=16% Similarity=0.043 Sum_probs=78.4
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCC---C--eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGA---K--HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~---~--~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
+...++.+|||+++-.|.=+..+.++.. . .|+|-|.+. -+......+..- ...++.+.+.++..++
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l--~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL--PSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc--CCcceeeecccceecccccccc
Confidence 3456889999999999988877777622 2 799999973 333333333221 2344555555544332
Q ss_pred ----CCCceeEEEEcCCccc----cCC-----h-----------hhHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 127 ----LPEKADILISEPMGTL----LVN-----E-----------RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 127 ----~~~~fDvIis~~~~~~----l~~-----e-----------~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
....||-|+++.+-+. -.+ + ..--.++....++||+||.++-+.|+ +.|++.+.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEa 306 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEA 306 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHH
Confidence 1147999999766221 000 0 00124567778999999999998887 56888877
Q ss_pred hHHHH
Q 015038 183 LFVEI 187 (414)
Q Consensus 183 l~~e~ 187 (414)
...++
T Consensus 307 VV~~~ 311 (375)
T KOG2198|consen 307 VVQEA 311 (375)
T ss_pred HHHHH
Confidence 65443
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.049 Score=50.67 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=55.5
Q ss_pred CCCEEEEECCCccHH-HHHHH-HcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC------CCceeE
Q 015038 63 IGRVVVDVGAGSGIL-SLFAA-QAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL------PEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~l-s~~~a-~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------~~~fDv 133 (414)
++-++||||.|.-.. .+.=. ..|. +.+|.|+++ .+..|+.++..|+.+...|++....-.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 345789999986432 22211 2255 699999996 7799999999996688888877654333212 368999
Q ss_pred EEEcCCccc
Q 015038 134 LISEPMGTL 142 (414)
Q Consensus 134 Iis~~~~~~ 142 (414)
.+||+++|-
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999999774
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.0087 Score=61.14 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=83.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--CC---CceeEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--LP---EKADIL 134 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~---~~fDvI 134 (414)
++-+|||.=|++|+-++..|+. |..+|++.|.++ .+...+++++.|+ ..+.++.-++|+.-+- .+ ..||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccchHHHHHHhccccccccceE
Confidence 3458999999999999999886 677899999995 7788899999886 7788888888876542 22 689999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
=.++.|+. ..+|+.+.+.++.||++..+.....
T Consensus 188 DLDPyGs~-------s~FLDsAvqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 188 DLDPYGSP-------SPFLDSAVQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred ecCCCCCc-------cHHHHHHHHHhhcCCEEEEEecchH
Confidence 98887764 4567777788999999988765544
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.048 Score=49.72 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=44.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCC-----CCCCcEEEEEcccccc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNP-----SLGERITVIKGKVEEV 125 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~-----~l~~~i~vi~~d~~~~ 125 (414)
+.-.+.|||||-|.|.+.++... -.-+.|.|+- ...++.+.++.+.. +.-.++.+...+...+
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 34568999999999999998773 3478999997 56677776665421 1234567776666554
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.045 Score=50.82 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=65.8
Q ss_pred CCCCC-CEEEEECCCccHHHHHHHHc--------CC--CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 60 ADFIG-RVVVDVGAGSGILSLFAAQA--------GA--KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 60 ~~~~~-~~VLDiGcGtG~ls~~~a~~--------g~--~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
..++| ++|+|+++..|.++..+++. +. +++++||+.+|+- + ..|.-+++|++...
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----------I-~GV~qlq~DIT~~sta 104 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----------I-EGVIQLQGDITSASTA 104 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----------c-CceEEeecccCCHhHH
Confidence 33444 58999999999999888875 11 1499999988752 2 34788889998753
Q ss_pred ------C-CCceeEEEEcCC----ccccCChh----hHHHHHHHHHhccCCCeEEEc
Q 015038 127 ------L-PEKADILISEPM----GTLLVNER----MLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ------~-~~~fDvIis~~~----~~~l~~e~----~l~~~l~~~~r~LkpgG~lip 168 (414)
+ .++.|+|+|+.. |-|-.+|= .+...+.-...+|||||.++-
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 1 258999999753 22222221 233445556789999999863
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.35 Score=44.64 Aligned_cols=105 Identities=18% Similarity=0.135 Sum_probs=60.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHh-------------------------------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAG------------------------------- 107 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~------------------------------- 107 (414)
.+-.+.|-+||+|.+.-.+.-. ..+.|+|-|++ ++++.|++|+.-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4458999999999775544432 23589999999 588999887632
Q ss_pred ----------CCCCCCcEEEEEccccccc------CCCceeEEEEcCC-ccccCChh-----hHHHHHHHHHhccCCCeE
Q 015038 108 ----------NPSLGERITVIKGKVEEVE------LPEKADILISEPM-GTLLVNER-----MLETYVIARDRFLVPMGK 165 (414)
Q Consensus 108 ----------n~~l~~~i~vi~~d~~~~~------~~~~fDvIis~~~-~~~l~~e~-----~l~~~l~~~~r~LkpgG~ 165 (414)
.+ -.....+..+|+.+.. .....|+|+.+.+ +....+++ -...++..+...|-++++
T Consensus 131 A~RL~~~l~~~g-~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEG-GDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTT-SS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcC-CCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 11 1223677888887742 2345799999866 33333332 367888999999955555
Q ss_pred EEc
Q 015038 166 MFP 168 (414)
Q Consensus 166 lip 168 (414)
+.+
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.15 Score=53.47 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
.++.+|+-+|||. |..++.+|+. |+ .|+++|.++ -++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 4688999999997 8888888876 88 699999995 5566555
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.48 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHHHHHhccCCCeEEEccc
Q 015038 149 LETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 149 l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..+|+.+.+-|.|||.|++..
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHHHhccCcEEEEEE
Confidence 5678888899999999998653
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.088 Score=51.42 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-c-cccc----c--CC-
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-K-VEEV----E--LP- 128 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d-~~~~----~--~~- 128 (414)
..++.+||-+|+|. |.+++.+|++ |+++|+.+|++ +-++.|++ +... .+..... + ..++ . ..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~-----~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT-----VTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe-----EEeeccccccHHHHHHHHHhhccc
Confidence 45788999999997 9999999998 99999999999 47788888 3221 1111111 1 1111 0 11
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+|+.+... . .+..++..-..+++||.++...
T Consensus 241 ~~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc---C------chHHHHHHHHHhccCCEEEEec
Confidence 3488888421 1 3344455567899999976543
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.2 Score=48.34 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHh--CCCCCCcEEEEEccccccc--C-CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAG--NPSLGERITVIKGKVEEVE--L-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~~--~-~~~fDvI 134 (414)
...++||-||.|.|......+++ ....+.-+|++. .++..++.+.. .+--+.+|.+.-||...+- . .++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45689999999999998888877 334788999985 55666665543 1212468999999876541 2 4789999
Q ss_pred EEcCCccccCChhh-HHHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+.-.-..+.+.. .+.++.-+.+.||+||+++...-
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 97543322222222 35666778899999999876543
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=49.77 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc----
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE---- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---- 126 (414)
+.+.+.+...++..++|.--|.|..+..+++. +..+|+|+|.++ +++.|++++.. ..+++.++++++.++.
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GGGHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHHHHHHHHH
Confidence 34555566678889999999999999999986 447999999995 77788877654 3579999999988763
Q ss_pred -C--CCceeEEEEcC
Q 015038 127 -L--PEKADILISEP 138 (414)
Q Consensus 127 -~--~~~fDvIis~~ 138 (414)
. ..++|.|+.++
T Consensus 87 ~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 87 ELNGINKVDGILFDL 101 (310)
T ss_dssp HTTTTS-EEEEEEE-
T ss_pred HccCCCccCEEEEcc
Confidence 2 25799998754
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.25 Score=48.97 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEE
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis 136 (414)
..++.+||-.|||. |.++..+|++ |+++|+++|.++ .++.+++. + ...-+..-..++.++. ..+.+|+|+-
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----G-a~~vi~~~~~~~~~~~~~~g~~D~vid 241 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----G-ADKLVNPQNDDLDHYKAEKGYFDVSFE 241 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----C-CcEEecCCcccHHHHhccCCCCCEEEE
Confidence 34688999999875 7777777776 777899999984 55665542 2 1110111111222211 1135899884
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+. ...+....+.|++||+++..
T Consensus 242 ~-~G~--------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 242 V-SGH--------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C-CCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 2 221 12334455789999998754
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.085 Score=51.54 Aligned_cols=92 Identities=28% Similarity=0.342 Sum_probs=59.4
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChHH-HHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCCcc
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEM-AEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPMGT 141 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~-~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~~~ 141 (414)
+++|+.||.|.+++.+.++|...|.++|+++. ++.-+.+. . .+..+|+.++.. ++.+|+++..++-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~------~---~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF------P---EVICGDITEIDPSDLPKDVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH------T---EEEESHGGGCHHHHHHHT-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc------c---ccccccccccccccccccceEEEeccCCc
Confidence 69999999999999999999989999999964 34444442 2 788899988753 22599999877621
Q ss_pred c---------cCChh--hHHHHHHHHHhccCCCeEEE
Q 015038 142 L---------LVNER--MLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 142 ~---------l~~e~--~l~~~l~~~~r~LkpgG~li 167 (414)
. ..++. .+..+++.+ +.++|.-.++
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ 108 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLL 108 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEE
T ss_pred eEeccccccccccccchhhHHHHHHH-hhccceEEEe
Confidence 1 11211 244555444 4568876554
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.32 Score=47.17 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
...+.+.+...++...+|.--|.|..+..+.... ..+++|+|.++ .++.|++++... .++++++++.+.++..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~---~~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF---DGRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc---CCcEEEEeCcHHHHHHH
Confidence 3455667777888999999999999999988874 35799999995 789999988764 4799999998877631
Q ss_pred -----CCceeEEEEcC
Q 015038 128 -----PEKADILISEP 138 (414)
Q Consensus 128 -----~~~fDvIis~~ 138 (414)
.+++|-|+.++
T Consensus 89 l~~~~i~~vDGiL~DL 104 (314)
T COG0275 89 LKELGIGKVDGILLDL 104 (314)
T ss_pred HHhcCCCceeEEEEec
Confidence 15788888753
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.21 Score=48.47 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG 107 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~ 107 (414)
.+.+++... .+|..|||..||+|..++.+.+.|- +.+|+|++ +.++.|++++..
T Consensus 198 ~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 198 LKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 333444332 5789999999999999999998876 69999999 588999988754
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.4 Score=47.55 Aligned_cols=94 Identities=32% Similarity=0.267 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEECCC-ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc-ccccc-CCCceeE
Q 015038 59 RADFIGRVVVDVGAG-SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK-VEEVE-LPEKADI 133 (414)
Q Consensus 59 ~~~~~~~~VLDiGcG-tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d-~~~~~-~~~~fDv 133 (414)
....++++|+-+|+| .|.++..+|++ |+ +|+++|.|+ -++.|++.-. -.++... ....+ ..+.||+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA--------d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA--------DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC--------cEEEEcCCchhhHHhHhhCcE
Confidence 345678999999998 35778888884 75 799999994 6777777522 2344432 11111 1245999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+.... ...+ ....+.|++||.++..-.
T Consensus 233 ii~tv~------~~~~----~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 233 IIDTVG------PATL----EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred EEECCC------hhhH----HHHHHHHhcCCEEEEECC
Confidence 996322 1113 334578999999976543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.24 Score=50.10 Aligned_cols=103 Identities=20% Similarity=0.109 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccc--------cccC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE--------EVEL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~--------~~~~ 127 (414)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. + ..++...-. ++..
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~-----~~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G-----AETINFEEVDDVVEALRELTG 251 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C-----cEEEcCCcchHHHHHHHHHcC
Confidence 3445778999999987 8888888876 66579999998 4666666531 1 123322111 1111
Q ss_pred CCceeEEEEcCCccc------------cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTL------------LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~------------l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+-..-+.. +.........+..+.+.|+++|.++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 236999986321110 001111234556677899999998654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.16 Score=41.64 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=27.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s 95 (414)
+....+|||||.|+|...+.+.|.. =+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP-GWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC-ccccccc
Confidence 4457999999999999999999884 7888874
|
; GO: 0008168 methyltransferase activity |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.81 Score=43.51 Aligned_cols=123 Identities=20% Similarity=0.153 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHH---c-C--CCeEEEEeCh-----H------------------
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQ---A-G--AKHVYAVEAS-----E------------------ 96 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~---~-g--~~~V~gvD~s-----~------------------ 96 (414)
.|...+..++.......-+..|+|+||-.|..+++++. + + .+++++.|.= +
T Consensus 57 ~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~ 136 (248)
T PF05711_consen 57 ERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG 136 (248)
T ss_dssp HHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence 34455666666665444566899999999987765543 1 2 3578888741 0
Q ss_pred ----HHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 97 ----MAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 97 ----~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+..++++...+.+.+++.++.|.+.+--. .+++-++..+.= ..+. -...|..++..|.|||+++++
T Consensus 137 ~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D----lYes-T~~aLe~lyprl~~GGiIi~D 211 (248)
T PF05711_consen 137 YLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD----LYES-TKDALEFLYPRLSPGGIIIFD 211 (248)
T ss_dssp HCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEES
T ss_pred ccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEecc----chHH-HHHHHHHHHhhcCCCeEEEEe
Confidence 1123333444434345789999999876422 245544443211 1122 345668888999999999998
Q ss_pred ccee
Q 015038 170 VGRI 173 (414)
Q Consensus 170 ~~~~ 173 (414)
.+..
T Consensus 212 DY~~ 215 (248)
T PF05711_consen 212 DYGH 215 (248)
T ss_dssp STTT
T ss_pred CCCC
Confidence 7664
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.13 Score=50.77 Aligned_cols=65 Identities=28% Similarity=0.295 Sum_probs=48.7
Q ss_pred EEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcCC
Q 015038 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEPM 139 (414)
Q Consensus 67 VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~ 139 (414)
|+|+.||.|.+++-+.++|..-+.++|+++ .++.-+.+. .+ .++.+|+.++... ..+|+++..++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~------~~--~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF------GN--KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC------CC--CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999999998888999996 334444432 22 4556888887532 36899998766
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.26 Score=45.27 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHH
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~ 103 (414)
+.+.+++... .++..|||.-||+|..+.++.+.|- +.+|+|+++ .++.|++
T Consensus 180 l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 3344444443 5688999999999999999999876 699999995 7777764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.10 E-value=1 Score=43.20 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCC-CCCcEEEEEcccc
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS-LGERITVIKGKVE 123 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~-l~~~i~vi~~d~~ 123 (414)
..|+..+-+.+.+.+.. ....|+.+|||-=.-...+......+++=+|..++++.-++.+...+. ...+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 34555555555555433 234799999998666555432211245555555677766777765431 2467889999986
Q ss_pred c-cc--C------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 124 E-VE--L------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 124 ~-~~--~------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+ +. + +...-+++++.+..++. +.....++..+.+...||+.++++...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 2 10 1 13455888888887775 445788999998888899999876433
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.38 Score=45.16 Aligned_cols=54 Identities=26% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG 107 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~ 107 (414)
.+.+++... .+|..|||.-||+|..+..+.+.|- +.+|+|+++ ..+.|.+++..
T Consensus 153 ~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 153 LQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 344444433 4788999999999999999998876 599999994 77888877765
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.37 Score=47.78 Aligned_cols=69 Identities=30% Similarity=0.333 Sum_probs=51.6
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC---C-ceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP---E-KADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---~-~fDvIis~~ 138 (414)
..+++|+.||.|.+.+-+..+|..-+.++|+++.+ +.-+.+.. . ..++..|+.++... . .+|+|+..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~-~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------H-GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------C-CceeechHhhcChhhccccCCCEEEeCC
Confidence 35899999999999999999999889999999744 33333322 1 45667777766433 2 799999877
Q ss_pred C
Q 015038 139 M 139 (414)
Q Consensus 139 ~ 139 (414)
+
T Consensus 76 P 76 (328)
T COG0270 76 P 76 (328)
T ss_pred C
Confidence 6
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.2 Score=44.14 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=57.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHH-H-HHHHHHHHhCCCCCCcEEEE-Ecccc-cc-cCCCceeEEEEcC
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEM-A-EYARKLIAGNPSLGERITVI-KGKVE-EV-ELPEKADILISEP 138 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~-~-~~a~~~~~~n~~l~~~i~vi-~~d~~-~~-~~~~~fDvIis~~ 138 (414)
+++++-+|+..=..-..+.+.|+++|..||.++. + +. ..+++.-+ ..|.. ++ ...++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~----------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE----------FRDRLSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc----------cccccccccHHHHHHHHHHhhccchhhheec
Confidence 6789999999878888888889999999998751 1 11 11222211 11111 11 1236788887632
Q ss_pred C------cc---ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 M------GT---LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~------~~---~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. +. -+...+.+..+ .++.+.|||||.+++.
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m-~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAM-AKIKCVLKPGGLLFLG 110 (177)
T ss_pred hhccccccccCCCCCccccHHHH-HHHHHhhccCCeEEEE
Confidence 2 11 12223334444 6678999999999754
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.44 Score=51.92 Aligned_cols=105 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCEEEEECCCccHHHHHHHHc-------C------CCeEEEEeChHH----H-----------HHHHHHHHhCC----C
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-------G------AKHVYAVEASEM----A-----------EYARKLIAGNP----S 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-------g------~~~V~gvD~s~~----~-----------~~a~~~~~~n~----~ 110 (414)
+.-+|||+|=|+|...+.+.+. . .-+++++|..++ + ..+++.....+ +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876655421 1 128999997431 1 11222221110 0
Q ss_pred C------CC--cEEEEEccccccc--CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 111 L------GE--RITVIKGKVEEVE--LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 111 l------~~--~i~vi~~d~~~~~--~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+ .+ +++++.+|+.+.- +..++|+++.+.+.-.-..+---+.++..+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 11 4557778887642 23579999988765433333334678899999999999986
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.099 Score=52.68 Aligned_cols=62 Identities=31% Similarity=0.370 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCc-EEEEEcccccc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGER-ITVIKGKVEEV 125 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~-i~vi~~d~~~~ 125 (414)
.+|..|.|+.||.|.+++.+++.| ++|++-|.+ ++++..+.+++.|. .... |++.+.|+.++
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHHHH
Confidence 467899999999999999999998 479999999 69999999999886 5554 99998887664
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.2 Score=46.45 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=49.9
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC--------------
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP-------------- 128 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-------------- 128 (414)
.-+++|+.||.|.+++-+-++|...|.++|+++.+ +.-+.+... .....++.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC----DPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC----CCccceeccChhhCccccccccchhhhhhhh
Confidence 34899999999999999999998889999999644 333333211 12244556677665421
Q ss_pred ----CceeEEEEcCC
Q 015038 129 ----EKADILISEPM 139 (414)
Q Consensus 129 ----~~fDvIis~~~ 139 (414)
..+|+++..++
T Consensus 164 ~~~~p~~DvL~gGpP 178 (467)
T PRK10458 164 RQHIPDHDVLLAGFP 178 (467)
T ss_pred hccCCCCCEEEEcCC
Confidence 25899998766
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.6 Score=43.46 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=55.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc------------C-----CCeEEEEeCh--HHHHHHHH---H---HHhCCCCCCcEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA------------G-----AKHVYAVEAS--EMAEYARK---L---IAGNPSLGERITV 117 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~------------g-----~~~V~gvD~s--~~~~~a~~---~---~~~n~~l~~~i~v 117 (414)
+.-+|+|+||.+|..++.+... + .-+|+--|.- +.-...+. . ....+ .--+.-
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~--~~f~~g 93 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR--NYFVSG 93 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT--SEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc--eEEEEe
Confidence 3458999999999998876632 1 0178888873 32222211 1 11111 011223
Q ss_pred EEcccccccCC-CceeEEEEcCCccccCC------------------------------------hhhHHHHHHHHHhcc
Q 015038 118 IKGKVEEVELP-EKADILISEPMGTLLVN------------------------------------ERMLETYVIARDRFL 160 (414)
Q Consensus 118 i~~d~~~~~~~-~~fDvIis~~~~~~l~~------------------------------------e~~l~~~l~~~~r~L 160 (414)
+-+.+..--+| ++.|+++|..-.|++.. ..++..+|+.+.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 34454443333 78999998544333210 133567888899999
Q ss_pred CCCeEEEccc
Q 015038 161 VPMGKMFPSV 170 (414)
Q Consensus 161 kpgG~lip~~ 170 (414)
+|||+|++..
T Consensus 174 v~GG~mvl~~ 183 (334)
T PF03492_consen 174 VPGGRMVLTF 183 (334)
T ss_dssp EEEEEEEEEE
T ss_pred ccCcEEEEEE
Confidence 9999998653
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.99 Score=42.90 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=46.3
Q ss_pred CCEEEEECCCccHHHHHHHHc---------CCCeEEEEeChH-HHHHHHHHHHhC----CCCCCcEEEEEcccccccCCC
Q 015038 64 GRVVVDVGAGSGILSLFAAQA---------GAKHVYAVEASE-MAEYARKLIAGN----PSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~---------g~~~V~gvD~s~-~~~~a~~~~~~n----~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.-+|+|+|+|+|.++..+++. ...+++.||+|+ +.+..++++... .....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999888764 123799999996 666666665431 1134456663 3444432
Q ss_pred ceeEEEEcCCcccc
Q 015038 130 KADILISEPMGTLL 143 (414)
Q Consensus 130 ~fDvIis~~~~~~l 143 (414)
..-+|++|-+...+
T Consensus 95 ~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 FPGFIIANELFDAL 108 (252)
T ss_dssp CCEEEEEESSGGGS
T ss_pred CCEEEEEeeehhcC
Confidence 45667776544433
|
; PDB: 4F3N_A 1ZKD_B. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.5 Score=43.59 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---ccc----cccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---KVE----EVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d~~----~~~~~~ 129 (414)
...++.+||-.|||. |.++..+|++ |+++|+++|.++ ..+.+++. + . + .++.. +.. +.....
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----G-a-~--~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----G-A-T--HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-C-c--eEEcCCCcCHHHHHHHHhCCC
Confidence 345788999999875 6667777775 776799999884 55555432 2 1 1 22221 111 111123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+|+|+- ..+ .. ..+....+.|+++|+++..
T Consensus 245 g~d~vid-~~g----~~----~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVID-AVG----RP----ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEE-CCC----CH----HHHHHHHHHhccCCEEEEE
Confidence 5899884 222 11 1233445789999998753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.61 Score=45.49 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=50.0
Q ss_pred EEECCCccHH-HHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------cCCCceeEEEEc
Q 015038 68 VDVGAGSGIL-SLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--------ELPEKADILISE 137 (414)
Q Consensus 68 LDiGcGtG~l-s~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--------~~~~~fDvIis~ 137 (414)
+|||.|.-.+ .+.-++...-...++|+++ ....|..++.+|+ +...|.+++-...+- ..+..||.+.||
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 7888876433 2222222223688999997 5599999999997 888888887644222 122459999999
Q ss_pred CCcc
Q 015038 138 PMGT 141 (414)
Q Consensus 138 ~~~~ 141 (414)
+++.
T Consensus 186 PPFf 189 (419)
T KOG2912|consen 186 PPFF 189 (419)
T ss_pred Cchh
Confidence 8854
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.1 Score=45.13 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh----HHHHHHHH----HHHhCCCCCCcEEEEEcccc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS----EMAEYARK----LIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s----~~~~~a~~----~~~~n~~l~~~i~vi~~d~~ 123 (414)
..+.+.+...++....|+|+|.|.+..+++.. +.++-+|+|+. +++...++ ..+..|.-...++.++++..
T Consensus 182 ~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 182 RSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 33555666678899999999999887776664 66678899985 23322222 22222212456888998887
Q ss_pred ccc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 124 EVE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 124 ~~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+.. +....++|+++.+. .++..... +..+..-+++|-+++
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~---Fdp~L~lr-~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVA---FDPELKLR-SKEILQKCKDGTRII 305 (419)
T ss_pred CHHHHHHHhhcceEEEEeccc---CCHHHHHh-hHHHHhhCCCcceEe
Confidence 643 22468899986542 23222112 235556678887775
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.28 Score=47.56 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=40.6
Q ss_pred cEEEEEcccccc--cCC-CceeEEEEcCCccccC-------------ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 114 RITVIKGKVEEV--ELP-EKADILISEPMGTLLV-------------NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 ~i~vi~~d~~~~--~~~-~~fDvIis~~~~~~l~-------------~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...++++|+.++ .++ ++||+|+++|+..... ....+..++.++.|+|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 457899999885 233 6899999998853210 0122467889999999999999864
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.23 E-value=2.5 Score=40.52 Aligned_cols=92 Identities=27% Similarity=0.234 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc-c----cccccCCCcee
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG-K----VEEVELPEKAD 132 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~-d----~~~~~~~~~fD 132 (414)
..++.+||-+|+|. |.++..+|++ |+++|+++|.++ -.+.+++. + .. .++.. + +.+......+|
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----G-a~---~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----G-AT---ALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C-Cc---EecCchhhHHHHHHHhCCCCCC
Confidence 34788999999875 6666666665 776799999874 44555442 2 11 11111 1 11111123589
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++-. .+ . ...+....+.|+++|.++..
T Consensus 190 ~vid~-~G----~----~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 190 VALEF-SG----A----TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEEC-CC----C----hHHHHHHHHHhcCCCEEEEe
Confidence 98842 11 1 12334456789999998743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.1 Score=43.70 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=51.0
Q ss_pred CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
++++||-+|||. |.++..+|++ |++.|+++|.++ .++.|... . ++ +..+. ....+|+|+- ..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-------~i--~~~~~-~~~g~Dvvid-~~ 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-------VL--DPEKD-PRRDYRAIYD-AS 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-------cc--Chhhc-cCCCCCEEEE-CC
Confidence 567899899886 7787777775 887788888874 44444321 0 11 11110 1246898884 22
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+. ...+..+.+.|+++|+++..
T Consensus 209 G~--------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 GD--------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CC--------HHHHHHHHHhhhcCcEEEEE
Confidence 21 22334556789999998743
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.58 Score=44.86 Aligned_cols=105 Identities=20% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-- 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-- 127 (414)
+.+++....+..|+.|+-+| -.-+.+++++-.| +++|..+|+++ .+....+.+.+.+ . ++++.+.-|++..-+
T Consensus 141 Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~-~~ie~~~~Dlr~plpe~ 217 (354)
T COG1568 141 RVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-Y-NNIEAFVFDLRNPLPED 217 (354)
T ss_pred eeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-c-cchhheeehhcccChHH
Confidence 34455556677889999999 4446666666544 67899999995 7788777777654 2 458888888877422
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPM 163 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg 163 (414)
.++||+.+.+|+...- .+..++..--..||.-
T Consensus 218 ~~~kFDvfiTDPpeTi~----alk~FlgRGI~tLkg~ 250 (354)
T COG1568 218 LKRKFDVFITDPPETIK----ALKLFLGRGIATLKGE 250 (354)
T ss_pred HHhhCCeeecCchhhHH----HHHHHHhccHHHhcCC
Confidence 2689999998875431 2555555444556655
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=90.18 E-value=3.5 Score=36.63 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=59.7
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccc-c----CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEV-E----LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~----~~~~fDvIis~ 137 (414)
.+.+|+-|||=+-...+.-......+++..|.+.- +.. +..+ .++.=|.... . +.++||+||++
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R-------F~~---~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR-------FEQ---FGGD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch-------HHh---cCCc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 45799999998744444331224457999999841 111 1222 3443344332 1 23689999999
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+. ..+..+......++.++|+++.++...+
T Consensus 94 PPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 94 PPF---LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CCC---CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 987 4566677777777777899888875543
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=89.90 E-value=2.1 Score=39.26 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=27.7
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
..+.+||-+|||. | ..+..+++.|..+++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3567899999995 4 45777888899999999976
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.73 E-value=1.6 Score=43.30 Aligned_cols=91 Identities=10% Similarity=0.049 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHH--cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQ--AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~--~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
..++.+||-+|||. |.++..+++ .|+.+|+++|.++ -++.|++ .+ . ...+ .++.....+|+|+-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~-~---~~~~----~~~~~~~g~d~viD 228 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD-E---TYLI----DDIPEDLAVDHAFE 228 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC-c---eeeh----hhhhhccCCcEEEE
Confidence 35688999999986 767666565 3666899999984 5555543 11 1 1111 11111124898884
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+... ....+....++|+++|+++..
T Consensus 229 -~~G~~~-----~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 -CVGGRG-----SQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred -CCCCCc-----cHHHHHHHHHhCcCCcEEEEE
Confidence 223110 123345556889999998743
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.89 Score=45.55 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=53.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc----cc--CCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE----VE--LPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~----~~--~~~ 129 (414)
....++.+||-.|+|. |.++..+|++ |+++|+++|.++ .++.+++. + .. .++..+-.+ +. .++
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G-a~---~~i~~~~~~~~~~i~~~~~~ 258 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G-AT---ATVNAGDPNAVEQVRELTGG 258 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C-Cc---eEeCCCchhHHHHHHHHhCC
Confidence 3345678888899875 6666666765 776799999884 55555442 2 11 122211111 10 123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-. .+ . ...+....+.|+++|.++.
T Consensus 259 g~d~vid~-~G----~----~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 259 GVDYAFEM-AG----S----VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCCEEEEC-CC----C----hHHHHHHHHHHhcCCEEEE
Confidence 68999842 12 1 1223344578999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=1.8 Score=43.23 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHhCCCCCCcEEE
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE----------------------MAEYARKLIAGNPSLGERITV 117 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~----------------------~~~~a~~~~~~n~~l~~~i~v 117 (414)
.++++||-||||. | .++..++++|..+++.+|.+. -++.|++.+.+.+ ..-+++.
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVP 100 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEE
Confidence 3567899999995 4 567778888998999999862 2334445554432 2345666
Q ss_pred EEccccccc---CCCceeEEEEc
Q 015038 118 IKGKVEEVE---LPEKADILISE 137 (414)
Q Consensus 118 i~~d~~~~~---~~~~fDvIis~ 137 (414)
+..++..-. +-..+|+||..
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEc
Confidence 666654221 12579999963
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.3 Score=43.22 Aligned_cols=95 Identities=20% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCEEEEECCCc-cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 63 IGRVVVDVGAGS-GILSLFAA-QAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGt-G~ls~~~a-~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
++.+|.-||.|. |..+.-+| ..|+ .|+.+|.| +-+...... +..++..+......+... .+.|++|...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~------f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL------FGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh------hCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 345677888886 65544444 3466 59999999 555444443 345788888777666533 5899999743
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
.+.....+.-+.+++.+.+|||++++
T Consensus 240 ---LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 ---LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ---EecCCCCceehhHHHHHhcCCCcEEE
Confidence 34445556666777788999999875
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=89.48 E-value=0.72 Score=41.59 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHhcCCCCCC-EEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCC-CCcEEEEEcc
Q 015038 45 YVRTGTYYAAVIENRADFIGR-VVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSL-GERITVIKGK 121 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~-~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l-~~~i~vi~~d 121 (414)
..|+..+...+.+.+...++. .|+.+|||-=.....+... +..+++-+|..++++.-++.+...+.. ..+.+++.+|
T Consensus 59 ~~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~D 138 (183)
T PF04072_consen 59 AARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPAD 138 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEecc
Confidence 345555555555555333444 8999999998887777764 344566666667777666666654211 1235578888
Q ss_pred cccccC----------CCceeEEEEcCCccccCChhhHHHHHHHH
Q 015038 122 VEEVEL----------PEKADILISEPMGTLLVNERMLETYVIAR 156 (414)
Q Consensus 122 ~~~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~ 156 (414)
+.+... +...-+++++.+..++.. .....++..+
T Consensus 139 l~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~-~~~~~ll~~i 182 (183)
T PF04072_consen 139 LRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSP-EQVDALLRAI 182 (183)
T ss_dssp TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-H-HHHHHHHHHH
T ss_pred ccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCH-HHHHHHHHHh
Confidence 876321 245678888888877754 3355555543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.1 Score=43.93 Aligned_cols=93 Identities=29% Similarity=0.319 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---c---cccccCCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---K---VEEVELPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d---~~~~~~~~ 129 (414)
....++.+||-+|+|. |.++..++++ |+++|++++.++ ..+.+++. + .. .++.. + +.+.....
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----g-a~---~~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----G-AD---FVINSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C-CC---EEEcCCcchHHHHHHHhCCC
Confidence 3445688999998865 6666666665 776699999874 55555432 1 11 12211 1 11111123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-.. + . ...+....+.|+++|.++.
T Consensus 231 ~~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 231 GADVAIECS-G----N----TAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998421 1 1 1223344578999999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.4 Score=42.30 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=44.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC------CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG------AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g------~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
.++..++|+|||.|.|+..+++.- ...++.||....-..+...+.... ....++-+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~-~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDE-SEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccC-CCCceEEEEEEeeccch
Confidence 466799999999999999998863 347999998632223333343332 12457888888888764
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=88.82 E-value=2 Score=42.88 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHhCCCCCCcEEEE
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE----------------------MAEYARKLIAGNPSLGERITVI 118 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~----------------------~~~~a~~~~~~n~~l~~~i~vi 118 (414)
...+||-+|||. | ..+..++++|..+++.+|.+. -++.|++.+.+.+ ..-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEE
Confidence 567899999995 4 467778888999999999751 2233444444322 22345666
Q ss_pred Eccccccc---CCCceeEEEE
Q 015038 119 KGKVEEVE---LPEKADILIS 136 (414)
Q Consensus 119 ~~d~~~~~---~~~~fDvIis 136 (414)
..++..-. +-..+|+||.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEE
Confidence 65554321 1257999996
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=88.82 E-value=4.1 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
+..+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999996 4 46777888899889999887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.4 Score=44.12 Aligned_cols=40 Identities=43% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHH
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~ 103 (414)
-+.|+|+|+|-|.++.+++-...-.|+|||-|. ..+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 368999999999999999876333799999995 3344433
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.57 Score=43.95 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.6
Q ss_pred EEEEEcccccc--cCC-CceeEEEEcCCcccc---------CC---hhhHHHHHHHHHhccCCCeEEEc
Q 015038 115 ITVIKGKVEEV--ELP-EKADILISEPMGTLL---------VN---ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 115 i~vi~~d~~~~--~~~-~~fDvIis~~~~~~l---------~~---e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++++++|+.++ .++ +++|+||.+|+.... .+ ...+..++.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 36778888775 344 789999999885310 00 12356778999999999998864
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=3.5 Score=38.22 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-------------------HHHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-------------------EMAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-------------------~~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
+..+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+++++...+ ..-+++.+...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~~~~~ 105 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEAHNEK 105 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEEEeee
Confidence 567899999995 4 56777888899999999987 12334444444422 23345555554
Q ss_pred cccccC---CCceeEEEE
Q 015038 122 VEEVEL---PEKADILIS 136 (414)
Q Consensus 122 ~~~~~~---~~~fDvIis 136 (414)
+.+... -..+|+||.
T Consensus 106 i~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVE 123 (212)
T ss_pred cCHHHHHHHHcCCCEEEE
Confidence 443211 146999996
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=87.97 E-value=3.3 Score=41.61 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3456788999999875 6666667765 77679999998 45566644
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.45 E-value=2.2 Score=39.67 Aligned_cols=90 Identities=28% Similarity=0.331 Sum_probs=51.8
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc------ccCCCceeE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE------VELPEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~------~~~~~~fDv 133 (414)
.++.+||..|+|+ |.....+++....+|++++.++ ..+.+++. + .. .++...-.+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----G-AD---HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----C-Cc---eeccCCcCCHHHHHHHhcCCCCCE
Confidence 5788999999996 6666666665335799999984 55554432 1 11 111111111 111357999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
++.... .. ..+....+.|+++|.++.
T Consensus 205 vi~~~~-----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 205 VIDAVG-----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred EEECCC-----CH----HHHHHHHHhcccCCEEEE
Confidence 986321 11 233445578899999864
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=87.34 E-value=2.8 Score=37.38 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=62.1
Q ss_pred EECCCccHHHHHHHHc-C-CCeEEEEeCh--H-HHH---HHHHHHHhCCCCCCcEEEEE-cccccccC-----CCceeEE
Q 015038 69 DVGAGSGILSLFAAQA-G-AKHVYAVEAS--E-MAE---YARKLIAGNPSLGERITVIK-GKVEEVEL-----PEKADIL 134 (414)
Q Consensus 69 DiGcGtG~ls~~~a~~-g-~~~V~gvD~s--~-~~~---~a~~~~~~n~~l~~~i~vi~-~d~~~~~~-----~~~fDvI 134 (414)
-||=|.=.++..+++. + ...++|.-.+ + ..+ .+..++..-. ...+.++. -|+.++.. ..+||.|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~--~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR--ELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh--hcCCccccCCCCCcccccccccCCcCCEE
Confidence 4666766777777776 4 5567776654 2 222 1334444321 12244433 36666532 2689999
Q ss_pred EEcCCcccc----------CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLL----------VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l----------~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|-|.|.... .+...+..++..+.++|+++|.+.++..
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~ 126 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLK 126 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 999875541 1234467889999999999999876644
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.29 Score=40.32 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.5
Q ss_pred ceeEEEEcCCcc--cc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGT--LL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~--~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|-.+.- ++ .+..-+..+++.+.+.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 589999855422 11 23344888999999999999999865
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.29 E-value=2.3 Score=42.24 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeC---h-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEA---S-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~---s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
.++.+||-+|+|. |.++..+|++ |+ +|++++. + +-.+.+++ .+ . +.+.....+..+......+|+|+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~G-a-~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LG-A-TYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cC-C-EEecCCccchhhhhhcCCCCEEE
Confidence 4678999999875 7777777776 66 6999987 3 23344432 22 1 11111111111111124689888
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
-. .+ . ...+....+.|+++|.++.
T Consensus 244 d~-~g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 244 EA-TG----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EC-cC----C----HHHHHHHHHHccCCcEEEE
Confidence 52 12 1 1234555688999998864
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=87.21 E-value=5.4 Score=38.01 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCc--cHH-HHHHHHc----CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 62 FIGRVVVDVGAGS--GIL-SLFAAQA----GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGt--G~l-s~~~a~~----g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
....+||-+|+|+ |.- +-...+. |+ .++-.|+.+. .++.-..+.+|...+.++.++|+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlI 125 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLI 125 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEE
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhh-------------ccccCCceeccccccCCCCcccEE
Confidence 3467999999997 322 2222332 33 4666666552 223345677999999889999999
Q ss_pred EEcCCc--------cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMG--------TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~--------~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+.-. .-...+.-...+..-++..|+-||.+.+-
T Consensus 126 iSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 126 ISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp EE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 998651 11222344556666677889999998653
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.7 Score=40.30 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+-+.|..........-|.+||.|.|..+..+..+|+.++..||++. .+.-.+...++. ..+..+.++|+..+.
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa---~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA---PGKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC---CcceEEeccccceeh
Confidence 3345666666667788999999999999999999999999999984 554444443332 346788888886653
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=86.40 E-value=3 Score=40.86 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChHHHHHHHHHHHhCCC-CCCcEEEEEcccc
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASEMAEYARKLIAGNPS-LGERITVIKGKVE 123 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~~~~~a~~~~~~n~~-l~~~i~vi~~d~~ 123 (414)
.|+..+-+.+...+... ...|+-+|||-=.-+..+-. +. .+|+=+|.-+.++.-++.++..+. .....+++..|++
T Consensus 76 ~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 45444445555554433 57899999995332222221 22 367777776777776666666542 2347899999998
Q ss_pred cccC----------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 124 EVEL----------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 124 ~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+-.. +..--++|++.+..++.. .....++..+...+.||-.++...
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~-~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPE-EAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCH-HHHHHHHHHHHHhCCCCceEEEec
Confidence 4321 234558889988877764 447889999999888888876553
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=86.03 E-value=4.9 Score=37.56 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--------------------EMAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--------------------~~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
...+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+++++.+.+ ..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEEEecc
Confidence 567899999995 4 56777888899999988643 12344444554432 2234666655
Q ss_pred cccccc---CCCceeEEEEc
Q 015038 121 KVEEVE---LPEKADILISE 137 (414)
Q Consensus 121 d~~~~~---~~~~fDvIis~ 137 (414)
.+.... +-..+|+||+.
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEc
Confidence 542211 11469999973
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.84 E-value=2.3 Score=42.04 Aligned_cols=94 Identities=26% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---ccc---ccCCCc
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---VEE---VELPEK 130 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~~~---~~~~~~ 130 (414)
...++.+||-.|+|. |.++..+|++ |++.|++++.++ ..+.+++. + .. .++..+ ... ......
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----G-a~---~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----G-AM---QTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-Cc---eEecCcccCHHHHHHHhcCCC
Confidence 345678999999876 6666666665 776689999874 44544331 2 11 122111 111 111235
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|.++.+..+. ...+....+.|++||.++..
T Consensus 229 ~d~~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 229 FDQLILETAGV--------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CCeEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 77343333332 22334455788999998754
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=85.06 E-value=2 Score=42.16 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 015038 56 IENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKL 104 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~ 104 (414)
.......++.+|.-+|+|. |+-..+-|++ |+++++|||++ +-.+.|++.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3444557889999999997 7666666665 99999999999 466777663
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.02 E-value=8.3 Score=38.77 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
...++.+||-.|+|. |.++..+|++ |+..|+++|.+ +..+.|++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 446788999999875 6666666665 77679999977 45555543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.8 Score=40.90 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=34.8
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc---------CCCeEEEEeChH-HHHHHHHHHHh
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA---------GAKHVYAVEASE-MAEYARKLIAG 107 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~---------g~~~V~gvD~s~-~~~~a~~~~~~ 107 (414)
......-.++|+|+|+|.++..+++. .+.+++.||+|+ ....-+++++.
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 33344568999999999998777654 245899999996 55555555543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=84.91 E-value=6.1 Score=38.33 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc------ccCCCce
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE------VELPEKA 131 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~------~~~~~~f 131 (414)
..++.+||..|+|. |..+..+|+. |. +|++++.+ +..+.+++. + .. .++...-.. ......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKEL----G-AD---EVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHh----C-CC---EEEcCCCcCHHHHHHHhcCCCc
Confidence 45677888888774 7777777775 65 59999988 455555432 2 21 111111101 1123569
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+++... + . ...+..+.+.|+++|.++..
T Consensus 234 D~vid~~-g----~----~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDFV-G----T----QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEECC-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 9988521 1 1 22345566899999998743
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=83.70 E-value=7.8 Score=35.40 Aligned_cols=74 Identities=11% Similarity=0.135 Sum_probs=45.3
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--H------------------HHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--M------------------AEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--~------------------~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
+..+||-+|||. | ..+..++.+|.++++.+|.+. . ++.+++.+++.+ ..-+++....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN-p~v~i~~~~~ 98 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN-PRVKVSVDTD 98 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC-CCCEEEEEec
Confidence 457899999986 3 456667778999999998641 1 233444444432 2234555555
Q ss_pred cccccc--CCCceeEEEEc
Q 015038 121 KVEEVE--LPEKADILISE 137 (414)
Q Consensus 121 d~~~~~--~~~~fDvIis~ 137 (414)
.+.+.. .-..||+|++.
T Consensus 99 ~~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 99 DISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred CccccHHHHHhCCCEEEEC
Confidence 444321 11579999974
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=83.69 E-value=3.5 Score=43.35 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
.++.+||-+|+|. |..+..+++. |+ .|+++|.++ .++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3568999999997 7777777765 77 599999985 4455444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.32 E-value=7.1 Score=37.95 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHH---HHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGIL---SLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~l---s~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+...+.+.....+++++|-+|+| |.- +..+++.|+++|+.++.+. ..+.+++..+........+.+...|+.+..
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~ 191 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTE 191 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhh
Confidence 44555443334567899999997 532 2334466888899998873 222232222211001122334444544321
Q ss_pred ----CCCceeEEEEcCC
Q 015038 127 ----LPEKADILISEPM 139 (414)
Q Consensus 127 ----~~~~fDvIis~~~ 139 (414)
.-..+|+||...+
T Consensus 192 ~~~~~~~~~DilINaTp 208 (289)
T PRK12548 192 KLKAEIASSDILVNATL 208 (289)
T ss_pred HHHhhhccCCEEEEeCC
Confidence 1146799996544
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.96 E-value=1.5 Score=45.28 Aligned_cols=105 Identities=19% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------cCCCcee
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--------ELPEKAD 132 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--------~~~~~fD 132 (414)
.+.++|-+|-|.|.+..++... +..++++||+++ |++.|+..+.-.. .++..+.-.|..+. .-...||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 3457899999999998887765 556899999995 8899988875321 12333433343322 1124799
Q ss_pred EEEEcCCc---ccc---CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMG---TLL---VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~---~~l---~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++...-+ +.+ ..+-..+.++..++..|.|.|.+++.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 99864322 111 11222467788889999999998643
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.76 E-value=9.1 Score=31.93 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.5
Q ss_pred CCEEEEECCCcc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEE
Q 015038 64 GRVVVDVGAGSG-ILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILIS 136 (414)
Q Consensus 64 ~~~VLDiGcGtG-~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis 136 (414)
.++|.++|.|.= ..+..+++.|.. |+++|+++. +. ...+.++..|+.+.... +..|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~------~a------~~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK------TA------PEGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc------cC------cccceEEEccCCCccHHHhhCccceee
Confidence 348999999873 346777888875 999999863 11 12478999999876543 67899997
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=82.59 E-value=12 Score=31.85 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=42.0
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--------------------EMAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--------------------~~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+||-+|||. | ..+..+++.|..+++.+|.+ +-++.+++.+.+.+ ..-+++.+...+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 478899984 4 45777888899899999854 11233344444322 2234555554443
Q ss_pred cc---cCCCceeEEEEc
Q 015038 124 EV---ELPEKADILISE 137 (414)
Q Consensus 124 ~~---~~~~~fDvIis~ 137 (414)
.. ..-..+|+|+..
T Consensus 80 ~~~~~~~~~~~diVi~~ 96 (143)
T cd01483 80 EDNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhhHHHHhcCCCEEEEC
Confidence 32 122579999973
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.43 E-value=7.2 Score=37.97 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=54.6
Q ss_pred CCCCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 60 ADFIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
....+++||-=|.|+| .++..+|+.|+ ++...|++ +-.+...+.++++| ++....+|+.+.+.
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHH
Confidence 3456889999999998 46888889998 69999998 45555555555543 68888888876521
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-+.+|++|.|.
T Consensus 109 k~e~G~V~ILVNNA 122 (300)
T KOG1201|consen 109 KKEVGDVDILVNNA 122 (300)
T ss_pred HHhcCCceEEEecc
Confidence 15799999763
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=82.06 E-value=9.8 Score=34.01 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 66 VVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 66 ~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
+|+-+|||. | ..+..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899995 5 45777888899889999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=81.86 E-value=9.9 Score=38.15 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=47.2
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--------------------HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--------------------MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--------------------~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
++.+||-+|||. | ..+..++++|.++++.+|.+. .++.|++++.+.+ ..-+++.+..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-p~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-PDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC-CCcEEEEEEe
Confidence 567999999995 4 456778888999999988642 2334555554432 2334555555
Q ss_pred ccccc---cCCCceeEEEEc
Q 015038 121 KVEEV---ELPEKADILISE 137 (414)
Q Consensus 121 d~~~~---~~~~~fDvIis~ 137 (414)
.+..- .+-..+|+|+..
T Consensus 106 ~i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 106 RLTWSNALDELRDADVILDG 125 (355)
T ss_pred ecCHHHHHHHHhCCCEEEEC
Confidence 54431 122579999963
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=81.58 E-value=11 Score=35.80 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=45.3
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--H------------------HHHHHHHHHHhCCCCCCcEEEEE
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--E------------------MAEYARKLIAGNPSLGERITVIK 119 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--~------------------~~~~a~~~~~~n~~l~~~i~vi~ 119 (414)
.+.++||-+|||. | ..+..+++.|..+++.+|.+ + -++.+++++.+.+ ..-+++.+.
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIETIN 108 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEEEEe
Confidence 3567999999984 4 45667778899999988764 1 1223334444322 233556665
Q ss_pred cccccccC---CCceeEEEEc
Q 015038 120 GKVEEVEL---PEKADILISE 137 (414)
Q Consensus 120 ~d~~~~~~---~~~fDvIis~ 137 (414)
..+.+... -..+|+||..
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDC 129 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEec
Confidence 55443211 1479999963
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=11 Score=36.87 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
..+++++|-.|+++|+ ++..+++.|+ +|+.+..+ +-++.+.+.+.... -..++.++..|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3567899999988764 3445566687 69988887 44444433333221 1246888999987752
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..++.|++|.+.
T Consensus 89 ~~~~~iD~li~nA 101 (313)
T PRK05854 89 AEGRPIHLLINNA 101 (313)
T ss_pred HhCCCccEEEECC
Confidence 124689999764
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.51 E-value=20 Score=34.47 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=46.0
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.+..+ . ..+.....+... ..++.++.+|+.+...
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE---GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHH
Confidence 4567899999987653 3455556677 58888775 2 233333333332 2468889999876421
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-.++|+||.+.
T Consensus 119 ~~~~~~iD~lI~~A 132 (290)
T PRK06701 119 VRELGRLDILVNNA 132 (290)
T ss_pred HHHcCCCCEEEECC
Confidence 13689998653
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=25 Score=32.17 Aligned_cols=71 Identities=24% Similarity=0.338 Sum_probs=43.8
Q ss_pred CCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 63 IGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 63 ~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
++++||-.|++.|+ ++..+++.|+ +|++++.++ -+..+.+..... .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 56899999987542 3344445577 699999874 333333333322 257888898876420
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
-+++|.++.+.
T Consensus 79 ~~~id~ii~~a 89 (238)
T PRK05786 79 LNAIDGLVVTV 89 (238)
T ss_pred hCCCCEEEEcC
Confidence 13468888754
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=81.39 E-value=11 Score=38.62 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=56.2
Q ss_pred HHHHHhcC-CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+.+... ...+++|+-+|+|. |.....+++. |+ +|+++|.++ -+..|+. .+ ..+. +..+. -
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G-----~~~~--~~~e~--v 255 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EG-----YEVM--TMEEA--V 255 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cC-----CEEc--cHHHH--H
Confidence 44444432 35789999999997 7766666654 77 699999985 4444443 22 1222 11221 1
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+|+|+... + . ...+-.+..+.+|+||+++..
T Consensus 256 ~~aDVVI~at-G----~---~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 256 KEGDIFVTTT-G----N---KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred cCCCEEEECC-C----C---HHHHHHHHHhcCCCCcEEEEe
Confidence 3579998631 1 1 122223336789999988644
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=81.23 E-value=3.9 Score=40.38 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc-------cccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE-------EVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~-------~~~~~~ 129 (414)
...++.+||-.|+|. |..+..+|++ |+.+|++++.++ ..+.+++ .+ .. .++..+-. ++....
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YG-AT---DIVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cC-Cc---eEecCCCCCHHHHHHHHhCCC
Confidence 445678898888774 6666666665 776799999874 4455443 22 21 22221111 111124
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+++... + . ...+....+.|+++|+++-
T Consensus 235 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-G----G----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 699998521 1 1 1234555678999998863
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=81.17 E-value=9.9 Score=37.10 Aligned_cols=90 Identities=21% Similarity=0.332 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---cccccC-CCceeEE
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---VEEVEL-PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~~~~~~-~~~fDvI 134 (414)
.++.+||..|||. |..+..++++ |..+|++++.++ ..+.+++. + . + .++..+ ...... .+.+|++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g-~-~--~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----G-A-D--ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----C-C-C--EEEcCCchhhhhhhccCCCccEE
Confidence 3788898888875 6666666665 775799999874 55544432 1 1 1 122211 112211 2459999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+... + . ...+....+.|+++|+++.
T Consensus 236 ld~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 236 FEAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 8531 1 1 1223455688999999864
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.11 E-value=12 Score=37.27 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=31.2
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
....++.+||-.|+|. |.++..+|++ |+.+|++++.++ ..+.+++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 3446788999888864 5666666665 776899999874 5555543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=80.94 E-value=25 Score=32.68 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=60.2
Q ss_pred HHHhcCCCCCCEEEEECCCcc----HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-ccccC
Q 015038 55 VIENRADFIGRVVVDVGAGSG----ILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVEL 127 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG----~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~~ 127 (414)
|.....-..-+.++++.|+-| .+++.+|. +-..++++|-.+ +.....++.+...+ +.+.++|+.++. +++-.
T Consensus 33 ISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 33 ISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred HHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHh
Confidence 333344455678999966543 22333332 223368888887 44555556565554 667789998884 33321
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
-..+|+++.+.= .++....+|+.+. +.|.|.++...
T Consensus 112 ~~~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 112 GLKGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred hccCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEe
Confidence 257898886421 1222225665543 55667665543
|
The function of this family is unknown. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.59 E-value=3.9 Score=40.81 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=53.2
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc-------ccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV-------EEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~-------~~~~~~~ 129 (414)
...++.+||-.|+|. |.++..+|++ |+.+|++++.++ ..+.+++. + . -.++..+- .+.. ..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g-~---~~~i~~~~~~~~~~v~~~~-~~ 253 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----G-A---THVINPKEEDLVAAIREIT-GG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----C-C---cEEecCCCcCHHHHHHHHh-CC
Confidence 345678898888765 6666667765 777899999884 44444331 1 1 12222111 1112 34
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|+|+-.. + . ...+..+.+.|+++|.++.
T Consensus 254 ~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 254 GVDYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CCcEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 689998521 1 1 1223455678899998874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.54 E-value=37 Score=32.38 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=66.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc----C-CCeEEEEeChH-HH-HHHHHHHHhCCCCCCcEEEEEcccccc--cCCC-ce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA----G-AKHVYAVEASE-MA-EYARKLIAGNPSLGERITVIKGKVEEV--ELPE-KA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~----g-~~~V~gvD~s~-~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~-~f 131 (414)
..+...+|+|+|+..-+..+..+ | ..+.+.||+|. .+ ..|+....... .-.+.-+.+|.+.. .+++ .-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~--~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP--GLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC--CCeEeehhhhHHHHHhcccCCCe
Confidence 45679999999998666665554 3 34899999994 55 56677666654 33466667776542 1222 11
Q ss_pred eEEEEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
-+++. +|+.+. .+.....++..+...|+||-.+++..
T Consensus 155 Rl~~f--lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVF--LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEE--ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22221 233222 23446788899999999999987654
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.06 E-value=12 Score=37.90 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.++.+|+-||||. | ..+..+|+.|..+++.+|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4567999999985 5 56778889999999999875
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.03 E-value=8.3 Score=31.88 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=50.5
Q ss_pred CccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------cCCCceeEEEEcCCcccc
Q 015038 73 GSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------ELPEKADILISEPMGTLL 143 (414)
Q Consensus 73 GtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~~~~fDvIis~~~~~~l 143 (414)
|.|.++..+|++ | .+|+++|.++ -.+.+++. + --.++..+-.++ .....+|+|+-. .+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----G----a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----G----ADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-VG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----T----ESEEEETTTSSHHHHHHHHTTTSSEEEEEES-SS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----c----ccccccccccccccccccccccccceEEEEe-cC---
Confidence 458888888887 6 6899999995 55666552 2 112333322211 112479999842 11
Q ss_pred CChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 144 VNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 144 ~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
. ...++...+.|+++|.++.....
T Consensus 68 -~----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -S----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -S----HHHHHHHHHHEEEEEEEEEESST
T ss_pred -c----HHHHHHHHHHhccCCEEEEEEcc
Confidence 1 33445666889999998765443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 414 | ||||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 1e-103 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 1e-103 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 1e-101 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 1e-101 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 1e-100 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 1e-46 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 1e-46 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 2e-46 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 3e-46 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 3e-46 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 6e-43 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 1e-42 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 5e-40 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 5e-38 | ||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-07 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-05 |
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 414 | |||
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-131 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-130 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-105 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-104 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-102 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-100 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 3e-62 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-15 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-14 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 5e-12 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 2e-10 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 4e-10 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 7e-10 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 1e-09 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 3e-09 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 7e-09 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 8e-09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 1e-08 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 1e-08 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 2e-08 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 2e-08 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 4e-08 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 5e-08 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 6e-08 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 8e-08 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 1e-07 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 1e-07 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 3e-07 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 1e-06 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 1e-06 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-06 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 1e-06 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 1e-06 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 1e-06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 2e-06 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 2e-06 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 4e-06 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 6e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 6e-06 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 7e-06 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 1e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 1e-05 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 1e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 1e-05 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 2e-05 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 3e-05 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 3e-05 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 3e-05 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 4e-05 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 4e-05 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 7e-05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 7e-05 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 7e-05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 7e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 7e-05 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 9e-05 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 1e-04 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 1e-04 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 1e-04 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 2e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-04 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 2e-04 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 3e-04 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 3e-04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 3e-04 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-04 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 4e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 5e-04 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 6e-04 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 6e-04 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 7e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 8e-04 |
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 380 bits (976), Expect = e-131
Identities = 183/358 (51%), Positives = 243/358 (67%), Gaps = 11/358 (3%)
Query: 14 SKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAG 73
S F ++ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG G
Sbjct: 1 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCG 60
Query: 74 SGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133
SGILS FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ DI
Sbjct: 61 SGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVDI 119
Query: 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALF 193
+ISEPMG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA F
Sbjct: 120 IISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANF 178
Query: 194 WQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDI 253
W Q +++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+I
Sbjct: 179 WYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEI 238
Query: 254 PLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQ 313
P KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG
Sbjct: 239 PFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGD 298
Query: 314 EITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371
++G +IA+ QSY I + V G SS LDLK P++R + P
Sbjct: 299 TLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTP 347
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 383 bits (985), Expect = e-130
Identities = 183/360 (50%), Positives = 244/360 (67%), Gaps = 11/360 (3%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
+S F ++ E SSA YF +YG L QQNM+QDYVRTGTY A+++N DF ++V+DVG
Sbjct: 108 RSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGC 167
Query: 73 GSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132
GSGILS FAAQAGA+ +YAVEAS MA++A L+ N +L +RI VI GKVEEV LPE+ D
Sbjct: 168 GSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSN-NLTDRIVVIPGKVEEVSLPEQVD 226
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
I+ISEPMG +L NERMLE+Y+ A+ ++L P G MFP++G +H+APF+DE L++E KA
Sbjct: 227 IIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKAN 285
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
FW Q +++GVDL+ L G+A YF QPVVD FD R+L+A +V + ++F + KE +L+ I+
Sbjct: 286 FWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIE 345
Query: 253 IPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAG 312
IP KF VHGLA WFDV F GS + WL+TAP P THWYQ+RC+ PL+ AG
Sbjct: 346 IPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAG 405
Query: 313 QEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQPY 372
++G +IA+ QSY I + V G SS LDLK P++R + P
Sbjct: 406 DTLSGTCLLIANKRQSYDISIVAQVDQTG---------SKSSNLLDLKNPFFRYTGTTPS 456
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 314 bits (805), Expect = e-105
Identities = 119/355 (33%), Positives = 178/355 (50%), Gaps = 25/355 (7%)
Query: 14 SKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAG 73
S+ + + +S YF Y + +L+D VRT TY ++ NR F +VV+DVG+G
Sbjct: 17 SEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSG 76
Query: 74 SGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKAD 132
+GIL +FAA+AGA+ V +E S +++YA K++ N L +T+IKGKVEEVELP EK D
Sbjct: 77 TGILCMFAAKAGARKVIGIECSSISDYAVKIVKAN-KLDHVVTIIKGKVEEVELPVEKVD 135
Query: 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKAL 192
I+ISE MG L E ML T + ARD++L P G +FP +++ D K
Sbjct: 136 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY---KIH 192
Query: 193 FWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVA-PAVSHVIDFKKTKEENLYEI 251
+W +N YG D++ + A +P+VD DP+ LV + +D K E+
Sbjct: 193 WW--ENVYGFDMSCIKDVAIK----EPLVDVVDPKQLVTNACLIKEVDIYTVKVED-LTF 245
Query: 252 DIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMA 311
P VH L +F++ F + +T+P +P THW Q + L V
Sbjct: 246 TSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 305
Query: 312 GQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRM 366
G+EI G + M ++ + + T+ + G L SC D YRM
Sbjct: 306 GEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ-------LCELSCSTD-----YRM 348
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 311 bits (797), Expect = e-104
Identities = 109/336 (32%), Positives = 165/336 (49%), Gaps = 15/336 (4%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
YF Y + MLQD VRT +Y A+I+N+ F ++V+DVG G+GILS+FAA+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 88 HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNE 146
HV V+ S + E A++L+ N ++IT+++GK+E+V LP K DI+ISE MG L+ E
Sbjct: 63 HVIGVDMSSIIEMAKELVELN-GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 147 RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTP 206
M++T + ARD +LV G +FP IH+A D E K +W Q+ YG D +P
Sbjct: 122 SMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDE---KLNYW--QDVYGFDYSP 176
Query: 207 LYGSAFHGYFSQPVVDAFDP-RLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRV 265
H +P+VD + + D K +L K + +
Sbjct: 177 FVPLVLH----EPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSNFKLTAKRQDMI 231
Query: 266 HGLACWFDVLFDGSTVQR--WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIA 323
+G+ WFD++F +R +T P AP THW Q L G I G+L
Sbjct: 232 NGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSP 291
Query: 324 HSAQSYTIYLTLSVKMWGPGADQGGILQTSSCKLDL 359
+ + + + +S K G D + + +
Sbjct: 292 NEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 305 bits (783), Expect = e-102
Identities = 101/340 (29%), Positives = 169/340 (49%), Gaps = 15/340 (4%)
Query: 2 HLPNGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRAD 61
+ S L + D E +YF YG + ML+D +RT +Y + +N
Sbjct: 4 SHHHHHHSSGLVPRGSDLQE-DEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHI 62
Query: 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGK 121
F +VV+DVG G+GILS+FAA+AGAK V V+ SE+ A +I N L + IT+IKGK
Sbjct: 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN-KLEDTITLIKGK 121
Query: 122 VEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180
+EEV LP EK D++ISE MG L+ E ML++ + A++++L G ++P + I + SD
Sbjct: 122 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD 181
Query: 181 EYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVA-PAVSHVID 239
+ + YG ++ + + + VV+ DP+ L++ P ID
Sbjct: 182 VNKHAD-----RIAFWDDVYGFKMSCMKKAVIP----EAVVEVLDPKTLISEPCGIKHID 232
Query: 240 FKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQ-RWLTTAPGAPTTHWYQ 298
T + E + + +A +FD+ F+ + +T P + THW Q
Sbjct: 233 CHTTSISD-LEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQ 291
Query: 299 LRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVK 338
+L +P V AG+ + G++ + + ++ +TL++
Sbjct: 292 TVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 331
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = e-100
Identities = 118/380 (31%), Positives = 183/380 (48%), Gaps = 33/380 (8%)
Query: 5 NGDVSGSLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIG 64
G G + D + YF Y L HQ++ML D VR Y+ AV +N+ F G
Sbjct: 8 AGTGGGGPSAPVDKE---VDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEG 64
Query: 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEE 124
+ V+DVG GSGIL++++AQAGA+ VYAVEA++MA++AR L+ N L + VI+G VE+
Sbjct: 65 KTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANN-LDHIVEVIEGSVED 123
Query: 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184
+ LPEK D++ISE MG L+ E M ++ + ARDR+L P G M+PS R+ +AP
Sbjct: 124 ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIAD 183
Query: 185 ---VEIANKALFWQQ-----QNYYGVDLT----PLYGSAFHGYFSQPVVDAFDP-RLLVA 231
+ W ++YYGVD+ P Y + + +P +++
Sbjct: 184 RKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGT 243
Query: 232 PAVSHVIDFKKTKEENLYEIDIPLKFISSV-GTRVHGLACWFDVLFDGSTVQR-----WL 285
P + +D + E+ + + ++ TR+ G WFDV F G L
Sbjct: 244 PTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIEL 303
Query: 286 TTAPGAP-TTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGPGA 344
TTAP THW Q ++S P+ V G + L M + + L+ ++
Sbjct: 304 TTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKE--- 360
Query: 345 DQGGILQTSSCKLDLKEPYY 364
+ + K K+ Y+
Sbjct: 361 ------ASGNPKESFKKTYF 374
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 3e-62
Identities = 57/365 (15%), Positives = 113/365 (30%), Gaps = 62/365 (16%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQ----------------DYVRTGTYYAAVI 56
+S+ D + + Y + Q LQ D ++ Y AV+
Sbjct: 338 RSRPDVGEGSNDSTHYLNVIEYKDVLQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVV 397
Query: 57 E-----NRADFIGRVVVDVGAGSGILSLFAAQAGAK--------------HVYAVEASEM 97
V+ +G G G + ++ + +Y VE +
Sbjct: 398 GALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN 457
Query: 98 AEYARKLIAGNPSLGERITVIKGKVEEVELP------EKADILISEPMGTLLVNERMLET 151
A K + + R+T+I+ + + E+ DI++SE +G+ NE +
Sbjct: 458 AIVTLKYMNVR-TWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNE-LSPE 515
Query: 152 YVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNY------------ 199
+ FL P P ++ P ++ I +++ + +
Sbjct: 516 CLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDE 575
Query: 200 YGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLY-EIDIPLKFI 258
+ + Q V + +A V F+ N E ++F+
Sbjct: 576 DEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTFEHPNFMNSSNERSDSIEFV 635
Query: 259 SSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTH---WYQLRCVLSQPLYVMAGQEI 315
+ G A +FD+ + L+ P T W+ L L V G I
Sbjct: 636 MDRNADLMGFAGYFDLQLYKTV---MLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRI 692
Query: 316 TGQLR 320
+ ++
Sbjct: 693 SLKID 697
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 6e-15
Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 13 KSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGA 72
++K+DDK +F Y Q+ + L+ + + DF + V+D+G
Sbjct: 5 ENKYDDKH-------FFEQYSQMPRSKEGLKAAGEW----HELKKMLPDFNQKTVLDLGC 53
Query: 73 GSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130
G G ++AA+ GAK V ++ SE M A++ + + +E++ + +
Sbjct: 54 GFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP-----VVCYEQKAIEDIAIEPDA 108
Query: 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGK-MFPSVGRIHMAPFSDEYLFVEIAN 189
++++S L + L G +F + A ++ E N
Sbjct: 109 YNVVLSS---LALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGN 165
Query: 190 KALFWQQQNYY 200
K L W Y+
Sbjct: 166 K-LHWPVDRYF 175
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-14
Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 24/210 (11%)
Query: 21 EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFI-GRVVVDVGAGSGILSL 79
+ + T A + + ++ D+G G+G ++
Sbjct: 5 NKTIHDFELNLICDFFSNMERQGPGSPEVTLKA--LSFIDNLTEKSLIADIGCGTGGQTM 62
Query: 80 FAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA-DILISE 137
A V ++ + + + L R+T I G ++++ + D++ SE
Sbjct: 63 VLAGHVTGQVTGLDFLSGFIDIFNRNARQSG-LQNRVTGIVGSMDDLPFRNEELDLIWSE 121
Query: 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQ 197
+ ER L ++L G + S + F+DE A FW
Sbjct: 122 GAIYNIGFERGLN----EWRKYLKKGGYLAVS----ECSWFTDERP----AEINDFW-MD 168
Query: 198 NYYGVDLTPLYGSAFH--GYFSQPVVDAFD 225
Y +D P + H GY V F
Sbjct: 169 AYPEIDTIPNQVAKIHKAGYL---PVATFI 195
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 5e-12
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 11/137 (8%)
Query: 60 ADFI--GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMA-EYARKLIAGNPSLGERI 115
A F+ G +++DVG+ L + + G K A E E + A K + + L E+I
Sbjct: 10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH-GLKEKI 68
Query: 116 TVIKGK-VEEVELPEKADILISEPMGTLLVN---ERMLETYVIARDRFLVPMGKMFPSVG 171
V + E ++ ++ MG L+ E L L P +
Sbjct: 69 QVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRI 128
Query: 172 RIHMAPFS--DEYLFVE 186
+ F E + E
Sbjct: 129 WLQDHGFQIVAESILEE 145
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 60 ADFI--GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMA-EYARKLIAGNPSLGERI 115
A+++ G ++DVG+ L +F Q G A E + A K ++ + L +I
Sbjct: 16 ANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH-GLTSKI 74
Query: 116 TVIKGKV-EEVELPEKADILISEPMGTLLV---NERMLETYVIARDRFLVPMGKMFPSVG 171
V E + D + MG L+ ++ + L P +
Sbjct: 75 DVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRK 134
Query: 172 RIHMAPFS--DEYLFVE 186
+ F E + E
Sbjct: 135 WLAANDFEIVAEDILTE 151
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 4e-10
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK--HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG 120
G VV V G L + + ++ E + A +L AG+ L +IT+ +
Sbjct: 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQ 177
Query: 121 KVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169
+++ E D+L S + ++ + + L P G + S
Sbjct: 178 DAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTS 226
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 7e-10
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 60 ADFI--GRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMA-EYARKLIAGNPSLGERI 115
A +I + D+G+ L FA + A A E + + A+K + + L E+I
Sbjct: 16 ASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS-GLTEQI 74
Query: 116 TVIKGK-VEEVELPEKADILISEPMGTLLV 144
V KG + +E + D ++ MG L+
Sbjct: 75 DVRKGNGLAVIEKKDAIDTIVIAGMGGTLI 104
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 20/124 (16%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 11 SLKSKFDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDV 70
++ +D +++ ++ Y + + + M++ + F ++++
Sbjct: 3 TISRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTP-------------FFRPGNLLEL 49
Query: 71 GAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129
G+ G + + + VEASE +A+ L + IT I + E+ +LP
Sbjct: 50 GSFKGDFTSRLQEHFND-ITCVEASEEAISHAQGR------LKDGITYIHSRFEDAQLPR 102
Query: 130 KADI 133
+ D
Sbjct: 103 RYDN 106
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-09
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Query: 48 TGTYYAAV----IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYAR 102
T AA I N + GR V+D G G+GIL+ + GA+ V A + A E A+
Sbjct: 32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 91
Query: 103 KLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142
+ + + V E+ +++ P G++
Sbjct: 92 RNC-------GGVNFMVADVSEISGKYDT-WIMNPPFGSV 123
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 7e-09
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 20/177 (11%)
Query: 42 LQDYVRTGTYYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA 98
L+ Y G + ++ D G+VV D+GAG+G+LS A GAK V VE + A
Sbjct: 25 LEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEA 84
Query: 99 -EYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARD 157
+ + + + V G V E + DI+I P
Sbjct: 85 VDVLIENLG---EFKGKFKVFIGDVS--EFNSRVDIVIMNPPFGSQRKHADR-------- 131
Query: 158 RFLVPMGKMFPSVGRIHMA-PFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFH 213
FL+ ++ V IH+A P ++ + +++ + FH
Sbjct: 132 PFLLKAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQF--FFH 186
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 8e-09
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP 109
+Y ++E+ + V++ G G+G L+ AG VY +E S M A++
Sbjct: 33 HYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKE------ 85
Query: 110 SLGERITVIKGKVEEVELPEKADILIS 136
L + ++ +G E+P D ++S
Sbjct: 86 KLPKEFSITEGDFLSFEVPTSIDTIVS 112
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS-LG-ERITVIKGK 121
VVVDVG GSG +++ A+ K VYA++ + A ++ N + + +IKG+
Sbjct: 36 DDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDG---AIEVTKQNLAKFNIKNCQIIKGR 91
Query: 122 VEEV---------------ELPEKADILISEPMGTLLVNERMLETYVIARDRF 159
E+V + + +IL + + ++ N +LE + F
Sbjct: 92 AEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKIINEF 144
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125
++D+ +G+GI+ L + + VE E +A+ A++ +A N L ++I +I+ ++++
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKKI 111
Query: 126 E---LPEKADILISEP 138
E+ADI+ P
Sbjct: 112 TDLIPKERADIVTCNP 127
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEASE-MAEYARKLIAGNPSLG 112
I+ D +++VDVG G G +L AQ + + + S M + A + G+P
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88
Query: 113 ERITVIKGKVEEVELPE 129
+ ++ ++ +
Sbjct: 89 KNVSFKISSSDDFKFLG 105
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 30 HYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFI----GRVVVDVGAGSGILSLFAAQ-A 84
H++ + Y + A++ A + + D+GAG+G + A
Sbjct: 5 HHHHHHSSGRE--NLYFQGHM--DAMLL--ASLVADDRACRIADLGAGAGAAGMAVAARL 58
Query: 85 GAKHVYAVEAS-EMAEYARKLIAGN--PSLGERITVIKGKVEEVELPEKADILISEPMGT 141
V E S EMAE+AR+ + + RI V++ V L E
Sbjct: 59 EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHH 118
Query: 142 LLVN 145
+++N
Sbjct: 119 VIMN 122
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 18/105 (17%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122
+ D+G G+G +LF A + ++ E + + +R+ I G +
Sbjct: 47 DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA-NCADRVKGITGSM 105
Query: 123 EEVELPEKA-DILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166
+ + + D++ SE + ER + + ++L G +
Sbjct: 106 DNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKYLKKGGFI 146
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 5e-08
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
VVVD G G ++ A G V A++ + AR + ++I I G
Sbjct: 79 CDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDF 136
Query: 123 EEVELPEKADILISEP 138
+ KAD++ P
Sbjct: 137 LLLASFLKADVVFLSP 152
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 6e-08
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVI 118
+ G +VD+G G G +A + GA +V ++ SE M AR IT
Sbjct: 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP-----DTGITYE 94
Query: 119 KGKVEEVELP-EKADILIS 136
+ ++++ LP + D+ S
Sbjct: 95 RADLDKLHLPQDSFDLAYS 113
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-08
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122
V+VD G G+G + + K +Y ++ + + + E+ +
Sbjct: 18 KGVIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKEVK----------EKFDSVITLS 66
Query: 123 EEVELP-EKADILIS 136
+ E+P D ++
Sbjct: 67 DPKEIPDNSVDFILF 81
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGER 114
+EN ++D+G G G++ + A K + + A + A++ I N
Sbjct: 45 VENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYD 103
Query: 115 ITVIKGKVEEVELPEKADILISEP 138
I V+ + E K + +I+ P
Sbjct: 104 IRVVHSDLYENVKDRKYNKIITNP 127
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSL 111
A++ V+D+G G G L A G V+ + + AR AG
Sbjct: 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGE--- 97
Query: 112 GERITVIKGKVEEVELPEKADILIS 136
+ + +V + + D++ +
Sbjct: 98 VHLASYAQLAEAKVPVGKDYDLICA 122
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-07
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITV 117
RA V DVG GSGIL++ A + GAK V A + S+ + A + A N I +
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI--YDIAL 113
Query: 118 IKGKVEEVELPEKADILI 135
K + ++ K D+++
Sbjct: 114 QKTSLLA-DVDGKFDLIV 130
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS---LGERITVIKG 120
V VDVG G+G ++L A + VYA++ + A N LG+ +T+++G
Sbjct: 34 NDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPE---AISTTEMNLQRHGLGDNVTLMEG 89
Query: 121 KVEEV--ELPEKAD-ILISEPMGTL 142
E ++P D ++ G L
Sbjct: 90 DAPEALCKIP-DIDIAVVGGSGGEL 113
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
YY + + ++ + + + A R V+D+ G+GI +L A+ G
Sbjct: 8 LAEYYDTI--YRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY- 64
Query: 88 HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136
V ++ EM AR+ +I ++G V E+ + D +
Sbjct: 65 EVVGLDLHEEMLRVARRKA---KERNLKIEFLQGDVLEIAFKNEFDAVTM 111
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 58 NRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERIT 116
NR +D+G+G G LS+ A+ + A++ S+ M E A K IA + +L +RI
Sbjct: 38 NRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIA-DANLNDRIQ 96
Query: 117 VIKGKVEEVELP-EKADILIS 136
+++G V + + AD+++S
Sbjct: 97 IVQGDVHNIPIEDNYADLIVS 117
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 64 GRVVVDVGAGSGILSL-FAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK 121
++D+GAG+G+LS + V+ SE M E A+ GN ++ I+
Sbjct: 45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEAD 100
Query: 122 VEEVELPEKADILIS 136
+ + EK D+++S
Sbjct: 101 YSKYDFEEKYDMVVS 115
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122
G ++D+G+GSG + A+ ++ S A++ + ER+ I
Sbjct: 37 GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDA 95
Query: 123 EEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166
EK D+ + + L P G M
Sbjct: 96 AGYVANEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIM 136
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 64 GRVVVDVGAGSGILSLFAAQA-GAK-HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG 120
G VVD G+G + F A G V+ + + K + + +L +R+T+IK
Sbjct: 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT-DLNLIDRVTLIKD 81
Query: 121 KVEEVELPEKADI 133
+ ++ +
Sbjct: 82 GHQNMDKYIDCPV 94
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 43 QDYVRTGTYYAAVIENRADFI---------GRVVVDVGAGSGILSLFAAQAGAKHVYAVE 93
Y R + V A + V +++G G+G ++L G A++
Sbjct: 10 YAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALD 68
Query: 94 ASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP 128
A M E R+ IAG + ++ V++ + LP
Sbjct: 69 ADAAMLEVFRQKIAG---VDRKVQVVQADARAIPLP 101
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 21 EPSSAKMYFHYYGQL-----LHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSG 75
++A Y G++ L Q +DY R AA++ + ++ DV G+G
Sbjct: 4 SSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLL-DVACGTG 62
Query: 76 ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134
+ A + V +E S +M AR+ + G + + L + +
Sbjct: 63 MHLRHLADSFG-TVEGLELSADMLAIARR-------RNPDAVLHHGDMRDFSLGRRFSAV 114
Query: 135 IS 136
Sbjct: 115 TC 116
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK--HVYAVEASE-MAEYARKLIAGNPSLGERITVIKG 120
+VD G G G L L + +++ E + AR+L L ++G
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR---LLPYDSEFLEG 79
Query: 121 KVEEVELPEKADILIS 136
E+EL +K DI I
Sbjct: 80 DATEIELNDKYDIAIC 95
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 34/136 (25%)
Query: 49 GTYYAAVIENRADFI---GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKL 104
G YY AV N I + V+D+G SG L + G + V +EA AE A++
Sbjct: 15 GHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAEQAKEK 73
Query: 105 IAGNPSLGERITVIKGKVEEVELPEKAD----ILISEPMGTLLVNERMLE------TYVI 154
+ V+ G +E +++P + + ++ + +LE +
Sbjct: 74 L---------DHVVLGDIETMDMPYEEEQFDCVIFGD----------VLEHLFDPWAVIE 114
Query: 155 ARDRFLVPMGKMFPSV 170
++ G + S+
Sbjct: 115 KVKPYIKQNGVILASI 130
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 34/226 (15%)
Query: 53 AAVIENRADFI--GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP 109
A ++ FI G VVD+ G GI + +E ++ A AR I
Sbjct: 81 AVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETAVAARHNIPLLL 139
Query: 110 SLGERITVIKGKVEEV--ELP-EKADILISEPMGTLLVNERM-------------LETYV 153
+ G+ + ++ G +E + D + +P ++R+ +
Sbjct: 140 NEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELL 199
Query: 154 IARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIAN---KALFWQQQNYYGVDLTPLYGS 210
L + M + E V + L N + +
Sbjct: 200 PFCSSILAKLSPMIDLWDTLQSLLHVQELHVVAAHGEVKELLVRMSLNEATIPPEKVPIH 259
Query: 211 AFHGYFSQPVV----DAFDPRLLVAPAVSHVIDFKKTKEENLYEID 252
A + V+ + R + P + + +YE
Sbjct: 260 AINLLLEDTVIPFIFTMEEERSISIPYTDSIDKY-------VYEPH 298
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 41 MLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAE 99
+L + +IE A + V++DVG+G+G + A G + +E + + E
Sbjct: 19 LLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVE 77
Query: 100 YARKLIAGNPSLGERITVIKGKVEEVELPEKA 131
AR+ +T G + ++ K
Sbjct: 78 LARQTHPS-------VTFHHGTITDLSDSPKR 102
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 7e-06
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
G V+D+G GSG+L++ A + G K V+ M A N G R ++G +
Sbjct: 121 GDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRN---GVRPRFLEGSL 176
Query: 123 EEVELPEKADILI 135
E D+L+
Sbjct: 177 EAALPFGPFDLLV 189
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 1e-05
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 42 LQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEY 100
L + G V+ ++ AG G L+ G V A+E S +
Sbjct: 62 LIQDADGTSEAREFATRTGPVSGPVL-ELAAGMGRLTFPFLDLGW-EVTALELSTSVLAA 119
Query: 101 AR-KLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136
R +L + +R T+++G + L ++ ++
Sbjct: 120 FRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVI 156
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASEMA-EYARKLIAGNPSLGE 113
+ V+DVG G+G+LS+ A+ K + + S A E +R +A N G
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN---GV 245
Query: 114 RITVIKGKVEEVELPEKADILISEP 138
V V E+ + D++IS P
Sbjct: 246 EGEVFASNVFS-EVKGRFDMIISNP 269
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 43 QDYVRTGTYYAAVIENRADFI----GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-M 97
+ Y +T ++ + + G V+ D+GAG+G S+ A G VYAVE S M
Sbjct: 10 KQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVM 68
Query: 98 AEYARKLIAGNPSLGERITVIKGKVEEVELPEKA-DILIS 136
+ A ++ G E + LP+K+ D +IS
Sbjct: 69 RQQAVVH--------PQVEWFTGYAENLALPDKSVDGVIS 100
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 45/269 (16%), Positives = 74/269 (27%), Gaps = 98/269 (36%)
Query: 196 QQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKK---TKEENLYEID 252
+ Y D+ ++ AF VD FD V D K +KEE
Sbjct: 13 EHQYQYKDILSVFEDAF--------VDNFD--------CKDVQDMPKSILSKEE------ 50
Query: 253 IPLKFISSVGTRVHGLACWFDVLFD--GSTVQR-----------WLTTA-------PGAP 292
+ I V G F L VQ+ +L + P
Sbjct: 51 --IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 293 TTHW-------------------------YQLRCVLSQ--P-----LYVMAGQEITGQLR 320
T + +LR L + P + + G +G+
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG---SGKTW 165
Query: 321 MIAHSAQSYTIYLTLSVKM-WGPGADQGGILQTSSCKLDLKEPYYRMSQPQPYVLTQDQQ 379
+ SY + + K+ W L +C P + Q + D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW---------LNLKNC----NSPETVLEMLQKLLYQIDPN 212
Query: 380 PHQLM-HSQDIPIQADDLEEPELIQLQSQ 407
HS +I ++ ++ EL +L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQA-ELRRLLKS 240
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122
G ++D+G G+G L+ AQ+GA V + + M E AR+ +
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQ-------NYPHLHFDVADA 109
Query: 123 EEVELPEKADILIS 136
+ + D + S
Sbjct: 110 RNFRVDKPLDAVFS 123
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITV 117
RA I V+++ +G+G + + V A++ S EM A + + +
Sbjct: 42 RAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR------HGLDNVEF 94
Query: 118 IKGKVEEVELPEKADILIS 136
+ + + + D +
Sbjct: 95 RQQDLFDWTPDRQWDAVFF 113
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 8/119 (6%)
Query: 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNP 109
+ + + + +++G +G + A + ++ A A +
Sbjct: 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS 97
Query: 110 SLGERITVIKGKVEEVELPEKAD-ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167
I+ + + E D I+++E + L + + T + + L P G +
Sbjct: 98 ----HISWAATDILQFSTAELFDLIVVAE-VLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 30 HYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHV 89
H Y +L+ DY + + + D+ G+G L+
Sbjct: 8 HIYDKLIRAD---VDYKKWSDFIIEKCVENNLVFDDYL-DLACGTGNLTENLCPKFKN-T 62
Query: 90 YAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136
+AV+ S EM A S G + + + + + K D++
Sbjct: 63 WAVDLSQEMLSEAENKF---RSQGLKPRLACQDISNLNINRKFDLITC 107
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSL 111
I + +D GAG G ++ +E + M E A++ +AG P
Sbjct: 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-- 140
Query: 112 GERITVIKGKVEEVELPE-KADILIS 136
I +E LP D+++
Sbjct: 141 --VGKFILASMETATLPPNTYDLIVI 164
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAK-HVYAVEASEMA-EYARKLIAGN-PSLG 112
+++ + + +VD+G G+G++ L + V V+ S MA +R + N P
Sbjct: 215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL 274
Query: 113 ERITVIKGKVEEVELPEKADILISEP 138
+R + P + + ++ P
Sbjct: 275 DRCEFMINNALSGVEPFRFNAVLCNP 300
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-05
Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 8/120 (6%)
Query: 19 KVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFI-GRVVVDVGAGSGIL 77
+VE S + ++ T + + A I V+D+G G G
Sbjct: 77 RVEALSDDLECTL--GFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRN 134
Query: 78 SLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136
SL+ + G V + + +E + + + I+ + + E D ++S
Sbjct: 135 SLYLSLLGY-DVTSWDHNENSIAFLNETKEKE---NLNISTALYDINAANIQENYDFIVS 190
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
+VVD G+G + F A +K VYA + E A + ++ E +I
Sbjct: 23 ESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDL--GIENTELILDGH 79
Query: 123 EEVE--LPEKADILI 135
E ++ + E I
Sbjct: 80 ENLDHYVREPIRAAI 94
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-05
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 30 HYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFI--GRVVVDVGAGSGILSLFAAQAGAK 87
+ N + + +I ++ V+DVG G G + ++ G
Sbjct: 18 KKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY- 76
Query: 88 HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP 128
V+ SE M + ++ G ++ IKG + LP
Sbjct: 77 KAVGVDISEVMIQKGKER-----GEGPDLSFIKGDLS--SLP 111
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 14/168 (8%)
Query: 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFI-GRVVVDVGAGSGILSLFAAQAG 85
++ Y + + Q + + +RT + A+ + +D+GAG G + F +
Sbjct: 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104
Query: 86 AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA-DILISEPMGTLL 143
+ + + + + L + ITV G E+ + + D + S+
Sbjct: 105 GVSIDCLNIAPVQNKRNEEYNN-QAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHS 163
Query: 144 VNERMLETYVIARDRFLVPMGKMF-------PSVGRIHMAPFSDEYLF 184
+ R L P G M + + + P D
Sbjct: 164 PD---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 208
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 7e-05
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 52 YAAVIENRADFIGRVVVDVGAGSGILS-LFAAQAGAKHVYAVEAS-EMAEYARKLIAGNP 109
V+ R V+D+G G G L + + + + V+ S E A++ +
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77
Query: 110 SL---GERITVIKGKVEEVEL-PEKADILIS 136
ER+ +I+G + + D
Sbjct: 78 LPRNQWERLQLIQGALTYQDKRFHGYDAATV 108
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
+ Y + +DY + A ++ +R ++ DV G+G +
Sbjct: 8 HADVYDLFYLGRG--KDYAAEASDIADLVRSRTPEASSLL-DVACGTGTHLEHFTKEFG- 63
Query: 88 HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136
+E S +M +ARK T+ +G + + L K ++S
Sbjct: 64 DTAGLELSEDMLTHARK-------RLPDATLHQGDMRDFRLGRKFSAVVS 106
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK--HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG 120
G V+DVG G+G + ++ + VYA++ EM YA + + + + V+K
Sbjct: 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--KNVEVLKS 95
Query: 121 KVEEVELPE 129
+ ++ LP+
Sbjct: 96 EENKIPLPD 104
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 9e-05
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 45 YVRTGTYYAAVIENRADFI------GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-M 97
Y + IE + V+D+ G G S G V V+ SE M
Sbjct: 14 TDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDM 72
Query: 98 AEYARKLIAGNPSLGERITVIKGKVEEVELPEKA-DILIS 136
AR+ S + I G ++ +K D +I
Sbjct: 73 IRKAREYAK---SRESNVEFIVGDARKLSFEDKTFDYVIF 109
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
GR V+D+GAG G L+L A+ GA+ V VE + +K + N + + V
Sbjct: 234 GRQVLDLGAGYGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEAN---ALKAQALHSDV 289
Query: 123 -EEVELPEKADILISEP 138
E + + DI+++ P
Sbjct: 290 DEALTEEARFDIIVTNP 306
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 1e-04
Identities = 25/156 (16%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSL-FAAQAGA 86
Y YYG +N + R F GR V+D+G G L+L A + G
Sbjct: 21 YCKYYGY----RNPSCEDGRLRVL------KPEWFRGRDVLDLGCNVGHLTLSIACKWGP 70
Query: 87 KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVN 145
+ ++ + AR+ I S R+ + + E+ + +
Sbjct: 71 SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASL 130
Query: 146 ERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
+ +FP+ + +
Sbjct: 131 TASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLD 166
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 64 GRVVVDVGAGSGILS-LFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121
D+G G G + L + G + +++ +M E A K
Sbjct: 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD-------RLPNTNFGKAD 86
Query: 122 VEEVELPEKADILIS 136
+ + +KAD+L +
Sbjct: 87 LATWKPAQKADLLYA 101
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKV 122
VVVD+ AG G S+ AK +YA++ + A E +K I N L +I I V
Sbjct: 196 NDVVVDMFAGVGPFSIACK--NAKKIYAIDINPHAIELLKKNIKLN-KLEHKIIPILSDV 252
Query: 123 EEVE---------LPEKADILISEPMGTLLVNERMLETYVIARD 157
EV+ LP+ A I + + ++ ++ Y I +D
Sbjct: 253 REVDVKGNRVIMNLPKFAHKFIDKALD-IVEEGGVIHYYTIGKD 295
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 20/113 (17%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 24 SAKMYFHYYGQ-----LLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILS 78
S Y H Y + L Q L+ + T Y G V++ G G G +
Sbjct: 2 SLTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPP---------GAKVLEAGCGIGAQT 52
Query: 79 LFAAQAGAK-HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129
+ A+ + +++ S E AR+ N + + ++ + + +
Sbjct: 53 VILAKNNPDAEITSIDISPESLEKARENTEKNG--IKNVKFLQANIFSLPFED 103
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAK-HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121
+ D+G GSG +++ ++ + E S E E ++
Sbjct: 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV--SDRIAVQQG 83
Query: 122 VEEV--ELPEKADILISEPMGTL 142
++P+ D++ T
Sbjct: 84 APRAFDDVPDNPDVIFIGGGLTA 106
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYA 91
+ G+ V ++GAG+G++S+ A AGA V A
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVA 107
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 32 YGQ-LLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVY 90
GQ +L ++ + A + VV++VG G+G +++ + AK V
Sbjct: 6 IGQHILKNPLIINSIID-----KAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVV 54
Query: 91 AVEA-SEMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129
A E + K + G P + ++ V+ G V + +LP
Sbjct: 55 ACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTDLPF 93
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 40 NMLQDYVR-TGTYYAAVIENRAD----------FIGRV-----VVDVGAGSGILSLFAAQ 83
+M Q + T +Y A+ F+G + ++++G G+G +
Sbjct: 4 DMTQAFDDDTLRFYRGNATAYAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLA 63
Query: 84 AGAKHVYAVEAS-EMAEYARKLIAGN 108
AG V A + S E+A A + +
Sbjct: 64 AGF-DVDATDGSPELAAEASRRLGRP 88
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122
+ V+D GAG + L Y +E S+ + A ++ + KG +
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSR---ENNFKLNISKGDI 80
Query: 123 EEVELPEKA-DILIS 136
++ +++ + S
Sbjct: 81 RKLPFKDESMSFVYS 95
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAG 107
++ V+E +D+G G+G SL+ A G V A + + M+ ++ +
Sbjct: 18 TRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSI 76
Query: 108 NPSLGERITVIKGKVEEVELPEKADILIS 136
+ + + + + D ++S
Sbjct: 77 --ENLDNLHTRVVDLNNLTFDRQYDFILS 103
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 43 QDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYA 101
+YV ++ ++ + G G + F A G V AV+ S + A
Sbjct: 9 SEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKA 67
Query: 102 RKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNER 147
++L G +IT ++ + + ++ A I L + R
Sbjct: 68 KQLAQ---EKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLR 110
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV 122
G ++ D+G GSG +S+ AG +E + E +K I L R+ ++G
Sbjct: 56 GELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTY-GLSPRMRAVQGTA 113
Query: 123 EEV--ELPE 129
+LP
Sbjct: 114 PAALADLPL 122
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Length = 189 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 6e-04
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGN-PSLG- 112
++ R D G V+D+ AGSG L L A GA V VE+ + + +IA N +LG
Sbjct: 36 IVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQR---SAAVIARNIEALGL 92
Query: 113 ERITVIKGKVE 123
T+ +G V
Sbjct: 93 SGATLRRGAVA 103
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 7e-04
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 52 YAAVIENRADFIGRVVVDVGAGSGILS-LFAAQAGAKHVYAVEASE-MAEYARKLIAGNP 109
V+ + V+D+G G G L L + + V+ S + E A+ + +
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 110 ---SLGERITVIKGKVEEVEL-PEKADILIS 136
+RI++ + + + D
Sbjct: 78 LPEMQRKRISLFQSSLVYRDKRFSGYDAATV 108
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Query: 67 VVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125
V+D+G+G G ++ + H + ++ + A + ++ +I +
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS----GNNKIIFEANDILTK 114
Query: 126 ELPEKA-DILISEPMGTLLVNERMLETYVIARDRFLVPMGKM 166
E PE D++ S L ++ ++L P G +
Sbjct: 115 EFPENNFDLIYSRDA-ILALSLENKNKLFQKCYKWLKPTGTL 155
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 414 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.61 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.61 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.61 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.6 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.59 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.57 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.57 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.57 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.55 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.54 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.54 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.54 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.54 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.53 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.53 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.53 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.53 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.53 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.53 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.52 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.52 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.52 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.52 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.51 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.51 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.51 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.51 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.5 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.5 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.5 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.49 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.49 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.49 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.49 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.49 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.48 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.48 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.48 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.48 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.48 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.48 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.48 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.48 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.47 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.47 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.47 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.47 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.47 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.46 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.46 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.46 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.46 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.46 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.46 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.45 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.45 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.45 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.45 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.44 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.44 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.44 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.44 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.44 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.43 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.43 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.43 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.42 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.41 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.41 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.41 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.41 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.4 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.4 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.4 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.4 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.4 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.4 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.39 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.39 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.39 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.39 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.39 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.39 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.39 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.39 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.38 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.38 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.38 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.38 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.38 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.37 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.37 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.37 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.37 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.37 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.37 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.36 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.36 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.36 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.36 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.36 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.36 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.35 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.34 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.34 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.34 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.34 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.34 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.33 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.33 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.33 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.33 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.33 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.33 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.33 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.32 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.32 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.32 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.32 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.31 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.31 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.3 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.29 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.29 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.29 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.29 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.28 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.28 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.28 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.28 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.28 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.28 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.28 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.27 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.27 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.27 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.27 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.27 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.27 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.27 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.26 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.26 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.26 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.26 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.26 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.26 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.26 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.25 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.25 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.25 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.24 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.24 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.24 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.23 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.23 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.23 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.23 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.22 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.22 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.22 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.22 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.22 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.21 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.21 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.2 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.2 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.2 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.19 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.19 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.19 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.19 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.18 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.18 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.18 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.16 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.16 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.15 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.14 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.12 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.12 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.11 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.11 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.1 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.1 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.1 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.08 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.08 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.07 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.07 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.06 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.06 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.06 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.06 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.05 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.03 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.03 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.02 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.01 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.01 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.98 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.97 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.96 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.95 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.95 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.9 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.9 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.83 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.82 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.81 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.77 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.76 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.75 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.71 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.7 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.68 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.67 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.6 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.58 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.51 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.5 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.37 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.31 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.28 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.28 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.26 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.16 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.07 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.0 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.95 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.88 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.81 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.74 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.65 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.63 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.63 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.59 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.56 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.47 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.44 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.43 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.23 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.92 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.88 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.76 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.67 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.6 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.53 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.06 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.73 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.68 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.49 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.48 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.12 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.1 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.09 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.86 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.72 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.57 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 94.54 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.47 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.46 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.45 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.24 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.22 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.11 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.92 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.84 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.79 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.62 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.59 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.55 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.54 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.5 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.15 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.04 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.97 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.91 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.87 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.68 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.39 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.11 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.95 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.92 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.43 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.3 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.8 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 90.74 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.64 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 90.52 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.5 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.4 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.24 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.18 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 89.89 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.84 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.72 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.54 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.32 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 89.25 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.05 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 88.97 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 88.86 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.34 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 88.26 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.22 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 88.21 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.13 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 88.04 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 87.8 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 87.39 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 87.39 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.31 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 87.3 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.23 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 87.19 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 87.16 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 86.94 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 86.8 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.73 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 86.73 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 86.69 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.65 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 86.52 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 86.43 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 86.41 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.17 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 85.87 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.77 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 85.71 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.63 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 85.61 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 85.31 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 85.26 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 84.8 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 84.77 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 84.32 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 84.14 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.08 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.06 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 83.84 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 83.75 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 83.67 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 83.66 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 83.63 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 83.45 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 83.37 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 83.29 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 83.14 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 82.98 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 82.92 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.92 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 82.1 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 81.93 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 81.54 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 81.52 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 81.48 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 81.32 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 81.1 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.99 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 80.86 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 80.78 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.63 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.22 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 80.04 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-62 Score=488.23 Aligned_cols=319 Identities=33% Similarity=0.539 Sum_probs=277.1
Q ss_pred CCCCCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHH
Q 015038 18 DKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEM 97 (414)
Q Consensus 18 ~~~~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~ 97 (414)
.++++.....||++|+++.+|++||+|.+|+.+|+++|.++...+++++|||||||+|+|++++|++|+++|+|||.|+|
T Consensus 38 ~~~~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~ 117 (376)
T 4hc4_A 38 RRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAI 117 (376)
T ss_dssp -----------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT
T ss_pred cCccccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHH
Confidence 34445566789999999999999999999999999999988878899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEee
Q 015038 98 AEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAP 177 (414)
Q Consensus 98 ~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 177 (414)
++.|+++++.|+ +.++|++++++++++.++++||+|||+++++++.+|.++..++.++.|+|||||+++|+.+++|++|
T Consensus 118 ~~~a~~~~~~n~-~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~ap 196 (376)
T 4hc4_A 118 WQQAREVVRFNG-LEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVP 196 (376)
T ss_dssp HHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEE
T ss_pred HHHHHHHHHHcC-CCceEEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEE
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHhHHHHHhhhccccc-cccccccccccccccccc--CCCCCeEeecCCc-cccCCceEEEEecCCCCcccc--cce
Q 015038 178 FSDEYLFVEIANKALFWQQ-QNYYGVDLTPLYGSAFHG--YFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENL--YEI 251 (414)
Q Consensus 178 ~~~~~l~~e~~~~~~~w~~-~~~~G~d~~~~~~~~~~~--~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l--~~~ 251 (414)
++++.++. +..||.. ...||+||+++...+... .+.+|+++.+++. +|++|+.+++|||.+++.++. ..+
T Consensus 197 ie~~~l~~----~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~ 272 (376)
T 4hc4_A 197 ISDQMLEW----RLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGV 272 (376)
T ss_dssp ECCHHHHH----HHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCE
T ss_pred eccchhhh----hhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccc
Confidence 99976643 4568863 345999999998765443 2357888888876 566789999999999887643 246
Q ss_pred eeeEEEEEeecceeeeEEEEEEEEecCC--ccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCce
Q 015038 252 DIPLKFISSVGTRVHGLACWFDVLFDGS--TVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSY 329 (414)
Q Consensus 252 ~~~~~~~~~~~g~~hg~~~wFd~~f~~~--~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~ 329 (414)
..++++++.++|.+|||++|||+.|+++ ..+++|||+|..+.|||+|++|+|++|+.|++||+|+|+|++++|.+++|
T Consensus 273 ~~~f~~~~~~~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R 352 (376)
T 4hc4_A 273 GGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPR 352 (376)
T ss_dssp EEEEEEECCSSEEEEEEEEEEEEEECCCC--CCEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTT
T ss_pred eeEEEEEecCCcEEEEEEEEEEEEecCCCCCCceEEeCCCCcCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCc
Confidence 6778888999999999999999999864 46789999999999999999999999999999999999999999988888
Q ss_pred EEEEEEEEEEeC
Q 015038 330 TIYLTLSVKMWG 341 (414)
Q Consensus 330 ~v~~~~~~~~~~ 341 (414)
+++|+++++..+
T Consensus 353 ~~~i~i~~~~~~ 364 (376)
T 4hc4_A 353 RLRVLLRYKVGD 364 (376)
T ss_dssp SEEEEEEEEETT
T ss_pred eeEEEEEEEeCC
Confidence 888888887543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-60 Score=471.67 Aligned_cols=345 Identities=52% Similarity=0.899 Sum_probs=307.5
Q ss_pred cCCCCCCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh
Q 015038 16 FDDKVEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 16 y~~~~~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s 95 (414)
|+.+.+..+.+.||++|+++..+..|++|..|+..|.+++.+.+...++++|||||||+|.+++.++++|+.+|+|+|+|
T Consensus 3 f~~~~~~~~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s 82 (348)
T 2y1w_A 3 FSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAS 82 (348)
T ss_dssp HHHHSCHHHHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECS
T ss_pred hhhhcccccHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCH
Confidence 45555667788999999999999999999999999999999998888899999999999999999999988899999999
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 96 EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 96 ~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++++.|+++++.++ +.++++++.+|+++++++++||+|+++++++++..+..+..+ ..+.++|||||.++++.+++++
T Consensus 83 ~~~~~a~~~~~~~~-l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~~~~~~l-~~~~~~LkpgG~li~~~~~~~~ 160 (348)
T 2y1w_A 83 TMAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESY-LHAKKYLKPSGNMFPTIGDVHL 160 (348)
T ss_dssp THHHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSCEEEEEECCCBTTBTTTSHHHHH-HHGGGGEEEEEEEESCEEEEEE
T ss_pred HHHHHHHHHHHHcC-CCCcEEEEEcchhhCCCCCceeEEEEeCchhcCChHHHHHHH-HHHHhhcCCCeEEEEecCcEEE
Confidence 98899999999887 778999999999998877899999999998888777655544 5678999999999999999999
Q ss_pred eeccchHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCccccCCceEEEEecCCCCcccccceeeeE
Q 015038 176 APFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPL 255 (414)
Q Consensus 176 ~~~~~~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~ 255 (414)
+|+..+.++.+......+|....++|+|++.+........|..|+++..+.+...++.....+||.++..+++..+..++
T Consensus 161 ~~i~~~~~~~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~ 240 (348)
T 2y1w_A 161 APFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPF 240 (348)
T ss_dssp EEECCHHHHHHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGGGBCBCCEEEEEETTTCCGGGGSEEEEEE
T ss_pred EEecchHHhhhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCeeecCcceEEEEECCcCChHHhceeeeeE
Confidence 99999888876666678898778999999999887766778899999988887777777788999999998887778899
Q ss_pred EEEEeecceeeeEEEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEE
Q 015038 256 KFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTL 335 (414)
Q Consensus 256 ~~~~~~~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~ 335 (414)
+|++.++|.+|||++|||+.|+++..+++|||+|..++|||+|++|+|++|+.|++|++|+|++++++|++++|+|+|++
T Consensus 241 ~~~~~~~g~~~g~~~wfd~~~~~~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~ 320 (348)
T 2y1w_A 241 KFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVA 320 (348)
T ss_dssp EEEBSSCEEEEEEEEEEEEEEECSSCEEEEECCTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEEEE
T ss_pred EEEEccCcEEEEEEEEEEEEEcCCCCceEEECCCCcCCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCCCcEEEEEE
Confidence 99999999999999999999999877899999999999999999999999999999999999999999988999999999
Q ss_pred EEEEeCCCCCCCCceeeeeccccCCCCceeecCCCc
Q 015038 336 SVKMWGPGADQGGILQTSSCKLDLKEPYYRMSQPQP 371 (414)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (414)
+++ + ...++++++|||||||||+|.|+
T Consensus 321 ~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T 2y1w_A 321 QVD--Q-------TGSKSSNLLDLKNPFFRYTGTTP 347 (348)
T ss_dssp EET--T-------TCCEEEEEEETTSCEECCCC---
T ss_pred EEc--c-------ccceecceEEccCccccccCCCC
Confidence 862 1 12478999999999999999875
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-56 Score=458.30 Aligned_cols=343 Identities=52% Similarity=0.893 Sum_probs=298.3
Q ss_pred CchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHH
Q 015038 22 PSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYA 101 (414)
Q Consensus 22 ~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a 101 (414)
....+.|+++|+....+..|+.+..++..|.+++.+.+...++++|||||||+|.+++.+++.|+.+|+|+|+|++++.|
T Consensus 117 ~~~~~~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A 196 (480)
T 3b3j_A 117 ESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHA 196 (480)
T ss_dssp ---CCEEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHH
T ss_pred hhchhhHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHH
Confidence 33444678899988888999999999999999999988777889999999999999999999888899999999988999
Q ss_pred HHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccch
Q 015038 102 RKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181 (414)
Q Consensus 102 ~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~ 181 (414)
++++..++ +.++++++.+|+++++++++||+|+|+++++++.++..+..+ ..+.++|||||.+++..++++++|+..+
T Consensus 197 ~~~~~~~g-l~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~~l-~~~~~~LkpgG~li~~~~~~~~~pi~~~ 274 (480)
T 3b3j_A 197 EVLVKSNN-LTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESY-LHAKKYLKPSGNMFPTIGDVHLAPFTDE 274 (480)
T ss_dssp HHHHHHTT-CTTTEEEEESCTTTCCCSSCEEEEECCCCHHHHTCHHHHHHH-HHGGGGEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHHcC-CCCcEEEEECchhhCccCCCeEEEEEeCchHhcCcHHHHHHH-HHHHHhcCCCCEEEEEeceeeeeccCch
Confidence 99999887 888999999999998777899999999998888777765554 4778999999999999999999999998
Q ss_pred HhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCccccCCceEEEEecCCCCcccccceeeeEEEEEee
Q 015038 182 YLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSV 261 (414)
Q Consensus 182 ~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~ 261 (414)
.++.+......+|....++|+|++.+........|..|+++.++.+.+.++.....+||.+...+++..+..+++|++.+
T Consensus 275 ~l~~e~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl~~~~d~~~~~~~~l~~~~~~~~~~~~~ 354 (480)
T 3b3j_A 275 QLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLH 354 (480)
T ss_dssp HHHHHHHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCEEEEEETTTCCTTTTTEEEEEEEEECSS
T ss_pred HHHHHHhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhhhhhhhhhcCChhhhcceeeeEEEEEcc
Confidence 88776656677898779999999999887766778999999988888777777789999999988887678899999999
Q ss_pred cceeeeEEEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEEeC
Q 015038 262 GTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWG 341 (414)
Q Consensus 262 ~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~~~ 341 (414)
+|.+|||++|||+.|+++..+++|||+|..++|||+|++|+|++|+.|++|++|+|++++++|++++|+|||+|+++ +
T Consensus 355 ~g~~hg~~~wFd~~~~~~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~~~~v~~~~~~~--~ 432 (480)
T 3b3j_A 355 SGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVD--Q 432 (480)
T ss_dssp CEEEEEEEEEEEEEEECSSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEEEEEET--T
T ss_pred CcEEEEEEEEEEEEEcCCCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCcEEEEEEEEc--c
Confidence 99999999999999999877899999999999999999999999999999999999999999988999999999862 1
Q ss_pred CCCCCCCceeeeeccccCCCCceeecCCCccccc
Q 015038 342 PGADQGGILQTSSCKLDLKEPYYRMSQPQPYVLT 375 (414)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (414)
.+ .+++|.+|||||||||+|.|+++-.
T Consensus 433 -----~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480)
T 3b3j_A 433 -----TG--SKSSNLLDLKNPFFRYTGTTPSPPP 459 (480)
T ss_dssp -----TC--CEEEEEEESSSCEEEEC--------
T ss_pred -----CC--cccCCeEeccCccccccCCCCCCCC
Confidence 22 4778999999999999998876644
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-53 Score=419.72 Aligned_cols=310 Identities=36% Similarity=0.593 Sum_probs=273.1
Q ss_pred CchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHH
Q 015038 22 PSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYA 101 (414)
Q Consensus 22 ~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a 101 (414)
....+.||+.|+....+.+|++|..|+..|.++|.......++++|||||||+|.+++.++++|+.+|+|+|+|++++.|
T Consensus 25 ~~~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a 104 (349)
T 3q7e_A 25 MTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 104 (349)
T ss_dssp ------------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHH
T ss_pred cchHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHH
Confidence 34567899999999999999999999999999998876667899999999999999999999998899999999999999
Q ss_pred HHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccc
Q 015038 102 RKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180 (414)
Q Consensus 102 ~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~ 180 (414)
+++++.++ +.++++++.+|+++++++ ++||+|+++++++++..+..++.++.++.++|||||+++|..++++++++.+
T Consensus 105 ~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~ 183 (349)
T 3q7e_A 105 VKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIED 183 (349)
T ss_dssp HHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHHHcC-CCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecC
Confidence 99999987 888899999999998776 7999999999999888888899999999999999999999999999999999
Q ss_pred hHhHHHHHhhhcccccccccccccccccccccccCCCCCeEeecCCcccc-CCceEEEEecCCCCcccccceeeeEEEEE
Q 015038 181 EYLFVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLV-APAVSHVIDFKKTKEENLYEIDIPLKFIS 259 (414)
Q Consensus 181 ~~l~~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~~L~-~~~~~~~~df~~~~~~~l~~~~~~~~~~~ 259 (414)
..+..+ +..+|. +++|+|++++...+ +..|+++.+++..+. .++.+.+||+.+.+.+++ .+..+++|++
T Consensus 184 ~~~~~~---~~~~w~--~~~G~d~~~~~~~~----~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l-~~~~~~~~~~ 253 (349)
T 3q7e_A 184 RQYKDY---KIHWWE--NVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQV 253 (349)
T ss_dssp HHHHHH---HTGGGG--CBTTBCCGGGHHHH----HTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGG-SEEEEEEEEB
T ss_pred hhhhhh---hhcccc--cccCcchHHHhHhh----hcCcEEEEEChhhEecccEEEEEEEcccCchhhc-ceeeeEEEEE
Confidence 877643 456896 89999999988765 467899999887554 578899999999999888 5788999999
Q ss_pred eecceeeeEEEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEE
Q 015038 260 SVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKM 339 (414)
Q Consensus 260 ~~~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~ 339 (414)
.++|.+|||++|||+.|++++.+++|||+|..+.|||+|++|+|++|+.|++|++|+|++++++|++++|+++|+++++.
T Consensus 254 ~~~~~~~g~~~~Fd~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~ 333 (349)
T 3q7e_A 254 KRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDF 333 (349)
T ss_dssp CSSEEEEEEEEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEE
T ss_pred ccCCEEEEEEEEEEEEecCCCCccEEECCCCcCCCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEe
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999987
Q ss_pred eCC
Q 015038 340 WGP 342 (414)
Q Consensus 340 ~~~ 342 (414)
.+.
T Consensus 334 ~~~ 336 (349)
T 3q7e_A 334 KGQ 336 (349)
T ss_dssp ECS
T ss_pred CCc
Confidence 643
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=403.99 Aligned_cols=304 Identities=35% Similarity=0.584 Sum_probs=275.2
Q ss_pred hHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIA 106 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~ 106 (414)
.||+.|++...|..|++|..|+..|.++|.+.....++++|||||||+|.+++.++++|+.+|+|+|+|++++.|+++++
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 58999999999999999999999999999887766788999999999999999999998889999999999999999999
Q ss_pred hCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHH
Q 015038 107 GNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFV 185 (414)
Q Consensus 107 ~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~ 185 (414)
.++ +.++++++.+|+++++++ ++||+|+++++++++.++..+..++.++.++|||||.++|+.++++++++.+..+..
T Consensus 82 ~~~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 160 (328)
T 1g6q_1 82 LNG-FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp HTT-CTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HcC-CCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhh
Confidence 887 888999999999998776 789999999998888888889999999999999999999999999999999877654
Q ss_pred HHHhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecce
Q 015038 186 EIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTR 264 (414)
Q Consensus 186 e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~ 264 (414)
+ ...+|. +.+|++++.+.... +..|+++.+++. .|++|+.+++|||.++..+++ .+..+++|++.++|.
T Consensus 161 ~---~~~~w~--~~~gf~~~~~~~~~----~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~g~ 230 (328)
T 1g6q_1 161 E---KLNYWQ--DVYGFDYSPFVPLV----LHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSNFKLTAKRQDM 230 (328)
T ss_dssp H---HHHHTT--CBTTBCCTTHHHHH----TTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEEEEEBCSSCE
T ss_pred h---hhcccc--cccCcChHHHhhhh----hcCCeEEEeccceeecCCEEEEEEECCCCChhHh-ceeeeEEEEEecCcE
Confidence 3 345785 78999999887765 367888888876 556689999999999988887 677889999999999
Q ss_pred eeeEEEEEEEEecC--CccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEEeC
Q 015038 265 VHGLACWFDVLFDG--STVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWG 341 (414)
Q Consensus 265 ~hg~~~wFd~~f~~--~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~~~ 341 (414)
+|||++|||+.|++ +...++|||+|..+.|||+|++++|++|+.|++|++|+|++.+.++.+++|+++|+++++..+
T Consensus 231 ~~g~~~wfd~~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 309 (328)
T 1g6q_1 231 INGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFES 309 (328)
T ss_dssp EEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEcCCCCCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEEEEEecC
Confidence 99999999999997 666789999999999999999999999999999999999999999999999999999998765
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=408.08 Aligned_cols=320 Identities=35% Similarity=0.586 Sum_probs=274.3
Q ss_pred CCchhhhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHH
Q 015038 21 EPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEY 100 (414)
Q Consensus 21 ~~~~~~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~ 100 (414)
++.+.+.||+.|...+.+..|++|..|+..|.+++.......++++|||||||+|.+++.++++|+++|+|+|+|+|++.
T Consensus 21 ~~~~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~ 100 (376)
T 3r0q_C 21 KEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADH 100 (376)
T ss_dssp -------CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHH
T ss_pred ccccHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHH
Confidence 34566789999999999999999999999999999998888899999999999999999999999889999999999999
Q ss_pred HHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccc
Q 015038 101 ARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSD 180 (414)
Q Consensus 101 a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~ 180 (414)
|+++++.++ +.++++++.+|++++.++++||+|+++++++++..+.++..++.++.++|||||.++++.++++.+|+.+
T Consensus 101 a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 179 (376)
T 3r0q_C 101 ARALVKANN-LDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS 179 (376)
T ss_dssp HHHHHHHTT-CTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECC
T ss_pred HHHHHHHcC-CCCeEEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecc
Confidence 999999987 8888999999999998888999999999999998888899999999999999999999999999999988
Q ss_pred hHhHHHHH-------hhhccccc-cccccccccccccccccc----CCCCCeEeecCCc-cccCCceEEEEecCCCCccc
Q 015038 181 EYLFVEIA-------NKALFWQQ-QNYYGVDLTPLYGSAFHG----YFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEEN 247 (414)
Q Consensus 181 ~~l~~e~~-------~~~~~w~~-~~~~G~d~~~~~~~~~~~----~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~ 247 (414)
+.+..... .-..||.. .+.+|+|++.+......+ .+.+|+++.+++. .|+.|+.+++|||.+++.++
T Consensus 180 ~~~~~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~ 259 (376)
T 3r0q_C 180 NIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSE 259 (376)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGG
T ss_pred hHHhhhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHH
Confidence 75532211 11256732 478999999998752111 3588999988876 55668999999999999999
Q ss_pred ccceeeeEEEEE-eecceeeeEEEEEEEEecCC-----ccceeecCCCC-CCCCCceeeEEeeCCeeeecCCCEEEEEEE
Q 015038 248 LYEIDIPLKFIS-SVGTRVHGLACWFDVLFDGS-----TVQRWLTTAPG-APTTHWYQLRCVLSQPLYVMAGQEITGQLR 320 (414)
Q Consensus 248 l~~~~~~~~~~~-~~~g~~hg~~~wFd~~f~~~-----~~~~~lsT~P~-~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~ 320 (414)
+..+..+++|++ .++|.+|||++|||+.|+++ ..+++|||+|. .+.|||+|++|+|++|+.|++|++|+|+|.
T Consensus 260 l~~~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~ 339 (376)
T 3r0q_C 260 IEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLL 339 (376)
T ss_dssp TSEEEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCSSCCCTTCEEEEEEEEEEEECTTCEEEEEEE
T ss_pred hcccccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCcCCCCceeeEEEEECCceecCCCCEEEEEEE
Confidence 866888999999 99999999999999999865 34689999999 569999999999999999999999999999
Q ss_pred EEeCCCCceEEEEEEEEEEeC
Q 015038 321 MIAHSAQSYTIYLTLSVKMWG 341 (414)
Q Consensus 321 ~~~~~~~~~~v~~~~~~~~~~ 341 (414)
+++|+++.|.++|+++++..+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~ 360 (376)
T 3r0q_C 340 MSRSKENHRLMEIELNCEIKE 360 (376)
T ss_dssp EEECSSCTTSEEEEEEEEEEC
T ss_pred EEECCCCCeeEEEEEEEEecC
Confidence 999987777776666665544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-49 Score=390.22 Aligned_cols=301 Identities=33% Similarity=0.582 Sum_probs=269.5
Q ss_pred hhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHH
Q 015038 26 KMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLI 105 (414)
Q Consensus 26 ~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~ 105 (414)
..||+.|.....+..|++|..|+..|.+++.+.....++++|||||||+|.+++.+++.|+.+|+|+|+|+|++.|++++
T Consensus 27 ~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~ 106 (340)
T 2fyt_A 27 GVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDII 106 (340)
T ss_dssp ---CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHH
T ss_pred hhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHH
Confidence 45899999999999999999999999999999887788999999999999999999999888999999999999999999
Q ss_pred HhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhH
Q 015038 106 AGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184 (414)
Q Consensus 106 ~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~ 184 (414)
+.++ +.++++++.+|+++++++ ++||+|+++++++.+.++..+..++.++.++|||||.++|+.++++++++.+..+.
T Consensus 107 ~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~~~ 185 (340)
T 2fyt_A 107 RLNK-LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKH 185 (340)
T ss_dssp HHTT-CTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHH
T ss_pred HHcC-CCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchhHh
Confidence 9887 778999999999998776 78999999998888888888999999999999999999999999999999887765
Q ss_pred HHHHhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecc
Q 015038 185 VEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGT 263 (414)
Q Consensus 185 ~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g 263 (414)
.+ ...+|. +.+|++++.+.+.. +..|+++.+++. .+++|..+.++||.+...+++ .+..++.+.+.++|
T Consensus 186 ~~---~~~~w~--~~~g~~~~~~~~~~----~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~ 255 (340)
T 2fyt_A 186 AD---RIAFWD--DVYGFKMSCMKKAV----IPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDFTLKITRTS 255 (340)
T ss_dssp HH---HTGGGG--CBTTBCCGGGHHHH----TTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEEEEEBCSCE
T ss_pred hh---hhcccc--cccCcChHHHHHhh----hcCcEEEEechhhcccCCEEEEEEECCCCccccc-ceEeeEEEEEccCc
Confidence 43 456885 78999999887654 577888887764 566789999999999888777 67788999999999
Q ss_pred eeeeEEEEEEEEe-cCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEE
Q 015038 264 RVHGLACWFDVLF-DGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSV 337 (414)
Q Consensus 264 ~~hg~~~wFd~~f-~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~ 337 (414)
.+|||++|||+.| .++...++|||+|..+.|||+|++|+|++|+.|++|++|+|+++++++.+++|+++|++++
T Consensus 256 ~~~g~~~wfd~~~~~~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~ 330 (340)
T 2fyt_A 256 MCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTL 330 (340)
T ss_dssp EEEEEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEE
T ss_pred EEEEEEEEEEEEeecCCCCCEEEECCCCcCCCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEE
Confidence 9999999999999 4666678999999999999999999999999999999999999999999899999999976
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=402.36 Aligned_cols=275 Identities=24% Similarity=0.303 Sum_probs=235.9
Q ss_pred hhhhhhhHHHHHHHHHhc--------CCCCCCEEEEECCCccHHHHHHHHcCCC-----eEEEEeChHHHHHHHHHHHhC
Q 015038 42 LQDYVRTGTYYAAVIENR--------ADFIGRVVVDVGAGSGILSLFAAQAGAK-----HVYAVEASEMAEYARKLIAGN 108 (414)
Q Consensus 42 l~d~~r~~~~~~ai~~~~--------~~~~~~~VLDiGcGtG~ls~~~a~~g~~-----~V~gvD~s~~~~~a~~~~~~n 108 (414)
-+|.+|+..|.+||.+.+ ...++++|||||||+|.|+.+++++|++ +|||||.|+++..|++.++.|
T Consensus 328 EkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N 407 (637)
T 4gqb_A 328 EKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFE 407 (637)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhc
Confidence 358889999999998643 2344568999999999997777776443 789999999999999999999
Q ss_pred CCCCCcEEEEEcccccccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHH
Q 015038 109 PSLGERITVIKGKVEEVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIA 188 (414)
Q Consensus 109 ~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~ 188 (414)
+ ++++|+++++|++++.+|+++|+||||+||+++.+|.++ +++.++.|+|||||+++|+.+++|++|++++.+|.+.
T Consensus 408 ~-~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~e~- 484 (637)
T 4gqb_A 408 E-WGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEV- 484 (637)
T ss_dssp T-TGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHHHH-
T ss_pred c-CCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHHHHHH-
Confidence 7 999999999999999999999999999999999999998 5779999999999999999999999999999998764
Q ss_pred hhhcccccccccccccccccccccccCCCCCeEeecCC-ccccCCceEEEEecCCCCcccccceeeeEEEEEeecceeee
Q 015038 189 NKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDP-RLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHG 267 (414)
Q Consensus 189 ~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~-~~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg 267 (414)
..+|. ..++++. .|.+|++..++. ..|++|+.+++|||.+....+...+..+++|++.++|++||
T Consensus 485 --~~~~~--~~~~~~~----------~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhG 550 (637)
T 4gqb_A 485 --RACRE--KDRDPEA----------QFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHG 550 (637)
T ss_dssp --HTTCC--TTSCTTG----------GGGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEE
T ss_pred --Hhccc--ccccchh----------hcCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEE
Confidence 34564 3333322 356787776654 56778999999999887666556788899999999999999
Q ss_pred EEEEEEEEecCCccceeecCCCCC---CCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEE
Q 015038 268 LACWFDVLFDGSTVQRWLTTAPGA---PTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKM 339 (414)
Q Consensus 268 ~~~wFd~~f~~~~~~~~lsT~P~~---~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~ 339 (414)
|++|||+.|+++ ++|||+|.. ++|||+|++|+|++|+.|++||+|+|+|+|+.|+ +.|||+|++..
T Consensus 551 f~~wFD~~f~~~---V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~---~kVWYEW~v~~ 619 (637)
T 4gqb_A 551 FAGYFETVLYQD---ITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNS---KKVWYEWAVTA 619 (637)
T ss_dssp EEEEEEEEEETT---EEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECS---SEEEEEEEEEE
T ss_pred EEEEEEEEeeCC---eEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCC---CceeEEEEEeC
Confidence 999999999876 579999963 5799999999999999999999999999999875 58999999854
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=379.79 Aligned_cols=292 Identities=18% Similarity=0.199 Sum_probs=236.5
Q ss_pred HhhhhhhhhhHHHHHHHHHhcCCC-----CCCEEEEECCCccHHHHHHHHc----C----------CCeEEEEeChHHHH
Q 015038 39 QNMLQDYVRTGTYYAAVIENRADF-----IGRVVVDVGAGSGILSLFAAQA----G----------AKHVYAVEASEMAE 99 (414)
Q Consensus 39 ~~ml~d~~r~~~~~~ai~~~~~~~-----~~~~VLDiGcGtG~ls~~~a~~----g----------~~~V~gvD~s~~~~ 99 (414)
+.|.+|.+|+..|++||..++.+. ++++|||||||+|.|+++++++ | +.+|+|||.|+++.
T Consensus 380 e~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~ 459 (745)
T 3ua3_A 380 NTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI 459 (745)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH
T ss_pred HHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH
Confidence 578899999999999999986432 2468999999999998665443 2 23999999998765
Q ss_pred HHHHHHHhCCCCCCcEEEEEcccccccC------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 100 YARKLIAGNPSLGERITVIKGKVEEVEL------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 100 ~a~~~~~~n~~l~~~i~vi~~d~~~~~~------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.+.+....|+ +.++|+++++|++++.+ ++++|+||||+||+++.+|.+.+ ++..+.|+|||||++||+.+++
T Consensus 460 ~~l~~~~~Ng-~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe-~Ld~v~r~Lkp~Gi~iP~~~t~ 537 (745)
T 3ua3_A 460 VTLKYMNVRT-WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPE-CLDGVTGFLKPTTISIPQKYTS 537 (745)
T ss_dssp HHHHHHHHHT-TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHH-HHHTTGGGSCTTCEEESCEEEE
T ss_pred HHHHHHHhcC-CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHH-HHHHHHHhCCCCcEEECCccEE
Confidence 5555544566 89999999999999988 78999999999999999887655 5677789999999999999999
Q ss_pred EEeeccchHhHHHHHhhhcccccccccccc-----cccccc----------cccccCCCCCeEeecCCc-cccC-CceEE
Q 015038 174 HMAPFSDEYLFVEIANKALFWQQQNYYGVD-----LTPLYG----------SAFHGYFSQPVVDAFDPR-LLVA-PAVSH 236 (414)
Q Consensus 174 ~~~~~~~~~l~~e~~~~~~~w~~~~~~G~d-----~~~~~~----------~~~~~~~~~p~v~~~~~~-~L~~-~~~~~ 236 (414)
|++|++++.+|.+... ++..--.+|+. +..... ......|..|+|+.++.. .|++ |++++
T Consensus 538 ylaPi~~~~l~~~v~~---~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vf 614 (745)
T 3ua3_A 538 YVKPIMSTHIHQTIKA---QSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVF 614 (745)
T ss_dssp EEEEEECHHHHHHHHT---CCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEE
T ss_pred EEEEecCHHHHHHHHh---hcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEE
Confidence 9999999999987654 22100123442 211000 001223689999998876 5566 78999
Q ss_pred EEecCCCCcccccceeeeEEEEEeecceeeeEEEEEEEEecCCccceeecCCCCCC---CCCceeeEEeeCCeeeecCCC
Q 015038 237 VIDFKKTKEENLYEIDIPLKFISSVGTRVHGLACWFDVLFDGSTVQRWLTTAPGAP---TTHWYQLRCVLSQPLYVMAGQ 313 (414)
Q Consensus 237 ~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~~~wFd~~f~~~~~~~~lsT~P~~~---~thW~Q~~~~l~~pl~v~~G~ 313 (414)
+||+.+...+++ .+..+++|++.++|.+|||++|||+.|+++ +.|||+|..+ +|||+|++|+|++|+.|++|+
T Consensus 615 tFdhp~~~~~d~-~r~~~~~F~~~r~g~iHGfagwFDi~Lyk~---V~LST~P~t~s~~mThWfQtfFPL~ePL~V~~Gd 690 (745)
T 3ua3_A 615 TFEHPNFMNSSN-ERSDSIEFVMDRNADLMGFAGYFDLQLYKT---VMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGD 690 (745)
T ss_dssp EEESSCTTCCCS-CEEEEEEEECCSSEEEEEEEEEEEEEEETT---EEEECSSTTCCTTCCSCCCEEEEEEEEEEECTTC
T ss_pred EEECCCCCcccc-ceeEEEEEEeCCCcEEEEEEEEEEEEecCC---cEEecCCCCCCCCCccceeEEEecCCceEeCCCC
Confidence 999998776665 688899999999999999999999999974 6799999875 799999999999999999999
Q ss_pred EEEEEEEEEeCCCCceEEEEEEEEEEeCC
Q 015038 314 EITGQLRMIAHSAQSYTIYLTLSVKMWGP 342 (414)
Q Consensus 314 ~i~~~i~~~~~~~~~~~v~~~~~~~~~~~ 342 (414)
+|+|+++++.+. +.|||+|++...++
T Consensus 691 eI~g~~~R~~d~---~kVWYEW~v~~~~~ 716 (745)
T 3ua3_A 691 RISLKIDRKVDN---TGVWYEWHVEKKKT 716 (745)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEECT
T ss_pred EEEEEEEEEcCC---CCEEEEEEEEeccC
Confidence 999999999864 79999999987754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=140.25 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=95.6
Q ss_pred hHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHH
Q 015038 27 MYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLI 105 (414)
Q Consensus 27 ~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~ 105 (414)
.|++.|.........+... .....+.+.+...++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++.
T Consensus 12 ~~~~~y~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~ 87 (253)
T 3g5l_A 12 HFFEQYSQMPRSKEGLKAA----GEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87 (253)
T ss_dssp -------------CHHHHH----HHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccccch----hhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhh
Confidence 5666666544332222221 2234556666666889999999999999999999988789999999 5889988875
Q ss_pred HhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 106 AGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 106 ~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..+++++.+|+.+++.+ ++||+|++..+.+++.+ +..+++.+.++|||||.+++..
T Consensus 88 ~-----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 88 T-----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIAS---FDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp C-----CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-----cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhh---HHHHHHHHHHHcCCCcEEEEEe
Confidence 4 25699999999988764 78999999887777744 7889999999999999998753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=138.66 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=97.3
Q ss_pred HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
..+...+. ..++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++...+ +.++++++.+|+.+++.+ +
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~ 113 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG-LQNRVTGIVGSMDDLPFRNE 113 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC-CCcCcEEEEcChhhCCCCCC
Confidence 33444444 45678999999999999999999876689999999 59999999998886 778899999999988754 7
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+||+|++..+.+++ + +..+++.+.++|||||.+++....
T Consensus 114 ~fD~i~~~~~~~~~-~---~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI-G---FERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp CEEEEEESSCGGGT-C---HHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CEEEEEEcCCceec-C---HHHHHHHHHHHcCCCCEEEEEEee
Confidence 89999998887776 3 678899999999999999877544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=142.00 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=90.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC---CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG---AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g---~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.. ..+|+|||+| +|++.|++++...+ ...+|+++++|+.+++. +.||+|++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCceEEEeecccccccc-cccccceee
Confidence 578899999999999999999862 2379999999 59999999998876 67789999999999876 479999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++..+ ....+++++++.|||||.+++..
T Consensus 147 ~~l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 147 FTLQFLEPS-ERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeecCch-hHhHHHHHHHHHcCCCcEEEEEe
Confidence 888777543 35678999999999999998754
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=134.06 Aligned_cols=105 Identities=24% Similarity=0.233 Sum_probs=88.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
.++.+|||+|||+|.+++.+++.++.+|+|+|+| .+++.|++++..++ + ++++++++|+.++. . .++||+|+++
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG-L-SGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT-C-SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEccHHHHHhhccCCCccEEEEC
Confidence 5788999999999999998888888899999999 59999999998876 5 68999999998864 2 4789999999
Q ss_pred CCccccCChhhHHHHHHHHHh--ccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDR--FLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r--~LkpgG~lip~~ 170 (414)
++.+.. ...+..++..+.+ +|+|||.+++..
T Consensus 121 ~p~~~~--~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 121 PPYNVD--SADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp CCTTSC--HHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred CCCCcc--hhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 875442 3447778888888 999999998754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=138.23 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=96.4
Q ss_pred HHHHHhc-CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 53 AAVIENR-ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 53 ~ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
..+...+ ...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+++.+ +
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN-CADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCCCCC
Confidence 3344444 345678999999999999999999865589999999 59999999999887 778899999999988765 7
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+||+|++..+.+++ + +..++..+.++|||||.+++....
T Consensus 114 ~fD~v~~~~~l~~~-~---~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 114 ELDLIWSEGAIYNI-G---FERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp CEEEEEEESCSCCC-C---HHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CEEEEEecChHhhc-C---HHHHHHHHHHHcCCCcEEEEEEee
Confidence 89999998877776 3 678889999999999999887644
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-15 Score=134.51 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
.+...+.......++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++.... .+++++.+|+.++..+
T Consensus 38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~ 112 (216)
T 3ofk_A 38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW----SHISWAATDILQFSTA 112 (216)
T ss_dssp HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC----SSEEEEECCTTTCCCS
T ss_pred HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC----CCeEEEEcchhhCCCC
Confidence 4445555566666778999999999999999999875 79999999 5899999887653 3799999999998866
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++.+...+..++..+.++|||||.+++..
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999999888888876667788999999999999998643
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=137.28 Aligned_cols=117 Identities=18% Similarity=0.113 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
....+...+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...+ +.++++++.+|+.++..++
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECChHhCCcCC
Confidence 445566666667889999999999999999998733479999999 59999999998876 7778999999999886667
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++....+++.+ +..++.++.++|||||.+++...
T Consensus 103 ~fD~V~~~~~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 103 KCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCEEEECCChHhcCC---HHHHHHHHHHHcCCCeEEEEecC
Confidence 8999999777766654 57888999999999999987643
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-14 Score=139.01 Aligned_cols=115 Identities=16% Similarity=0.105 Sum_probs=98.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
...+.+.+...++.+|||||||+|.++..+++. | .+|+|+|+| .+++.|++++..++ +.++++++.+|+.++ ++
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~--~~ 136 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEEF--DE 136 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCGGGC--CC
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCHHHc--CC
Confidence 344556666678889999999999999999998 7 579999999 59999999999886 778999999999987 68
Q ss_pred ceeEEEEcCCccccCCh------hhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNE------RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++..+.+++.+. ..+..++..+.++|||||.+++..
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999998888777543 457889999999999999998754
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=133.78 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
+...+.......++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++...++ .+++++.+|+.+++.++
T Consensus 29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~ 104 (252)
T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFKN 104 (252)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCCS
T ss_pred HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcC---CceEEEECChhhcccCC
Confidence 444444444445678999999999999999999876 79999999 59999999988764 36999999999987778
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++............+..++..+.++|||||.++++.
T Consensus 105 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999985433333455567889999999999999998753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-14 Score=130.17 Aligned_cols=114 Identities=26% Similarity=0.360 Sum_probs=94.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
....+.+.....++ +|||+|||+|.++..+++....+|+|+|+| .+++.|++++..++ +..+++++.+|+.+++.+
T Consensus 32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHHHCCCCc
Confidence 33445555544444 999999999999999998744489999999 59999999998876 677899999999998765
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|++....+++.+ +..++..+.++|||||.+++.
T Consensus 110 ~~~D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWED---VATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp TCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccEEEECchHhhccC---HHHHHHHHHHhCCCCCEEEEE
Confidence 68999999887777644 678899999999999999875
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=134.42 Aligned_cols=117 Identities=18% Similarity=0.105 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
....+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...+ +.++++++.+|+.+++.+
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAG-LANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECccccCCCCC
Confidence 345566666667889999999999999999998644589999999 59999999998876 777899999999988765
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++||+|++..+.+++.+ ...++..+.++|||||.+++...
T Consensus 128 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 128 ASFDAVWALESLHHMPD---RGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TCEEEEEEESCTTTSSC---HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCccEEEEechhhhCCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 68999999887777755 57889999999999999987643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.9e-15 Score=139.77 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC--CCcEEEEEccc
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL--GERITVIKGKV 122 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l--~~~i~vi~~d~ 122 (414)
.+...+...+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .+++.|+++....... ..++.+..+|+
T Consensus 40 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~ 118 (293)
T 3thr_A 40 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 118 (293)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred chHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence 34456666666666556788999999999999999999987 79999999 5999998877543211 14688999999
Q ss_pred cccc---C-CCceeEEEEc-CCccccCC----hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVE---L-PEKADILISE-PMGTLLVN----ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~---~-~~~fDvIis~-~~~~~l~~----e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++ . .++||+|+|. ...+++.+ ...+..+++.+.++|||||.+++..
T Consensus 119 ~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 119 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8876 3 4789999997 56666665 4568889999999999999998653
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=130.95 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=91.7
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCC----cEEEEEcccccccCC
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGE----RITVIKGKVEEVELP 128 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~----~i~vi~~d~~~~~~~ 128 (414)
+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..++ +.. +++++.+|+.....+
T Consensus 21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR-LPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcccCcceEEEeCCccccccc
Confidence 33333345678999999999999999999753 589999999 59999999988765 543 799999999766543
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++. ...+..+++.+.++|||||.++...
T Consensus 100 ~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GCSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CCCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 6899999988887774 3446788999999999999776543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=134.30 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcC-Cc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP-MG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~-~~ 140 (414)
++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++...++ . +++++.+|+.+++.+++||+|++.. ..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG-L--KPRLACQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT-C--CCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcC-C--CeEEEecccccCCccCCceEEEEcCccc
Confidence 678999999999999999998876 69999999 59999999988764 3 6999999999887778999999987 77
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++.+...+..++..+.++|||||.++++
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 77766566889999999999999999864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=137.15 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=89.4
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~~ 139 (414)
++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...+ +..+++++.+|+.++. .+++||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 467999999999999999999876 79999999 59999999998876 6678999999999886 3478999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.+ +..++..+.++|||||.+++..
T Consensus 146 l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 146 LEWVAD---PRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhcccC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 877765 5788999999999999997653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.58 Aligned_cols=107 Identities=16% Similarity=0.072 Sum_probs=85.3
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCC----------CCCcEEEEEcccccccC
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPS----------LGERITVIKGKVEEVEL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~----------l~~~i~vi~~d~~~~~~ 127 (414)
+...++.+|||+|||+|..+..+++.|. +|+|||+| .|++.|+++...... ...+++++++|+.+++.
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~ 96 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 96 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc
Confidence 3345778999999999999999999887 79999999 599999887643100 02479999999999876
Q ss_pred C--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 128 P--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 128 ~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+ ++||+|++....+++. ......+++.+.++|||||.++
T Consensus 97 ~~~~~fD~v~~~~~l~~l~-~~~~~~~l~~~~r~LkpgG~~~ 137 (203)
T 1pjz_A 97 RDIGHCAAFYDRAAMIALP-ADMRERYVQHLEALMPQACSGL 137 (203)
T ss_dssp HHHHSEEEEEEESCGGGSC-HHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccCCCEEEEEECcchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence 4 6899999977666654 4446778999999999999844
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=132.60 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=86.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEcccccccC---CCc-eeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVEL---PEK-ADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~~---~~~-fDvIis 136 (414)
++.+|||+|||+|.+++.++..++.+|+|+|+| .+++.|++++..++ +. ++++++.+|+.++.. +++ ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhC-CCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 678999999999999999888887789999999 59999999999876 54 689999999987632 367 999999
Q ss_pred cCCccccCChhhHHHHHHHH--HhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIAR--DRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~ 172 (414)
+++.+ ......++..+ .++|+|||.+++....
T Consensus 132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 98733 23356677777 6789999999876544
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=128.91 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=88.7
Q ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-CCC
Q 015038 54 AVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-LPE 129 (414)
Q Consensus 54 ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~~~ 129 (414)
.+.+.+. ..++++|||+|||+|.++..+++.+..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+. + .++
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcHHHhHHhhcC
Confidence 3444433 45778999999999999999999877799999999 59999999999876 667899999999884 2 346
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
+||+|+++++.+. .....++..+. ++|+|||.+++...
T Consensus 100 ~fD~i~~~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 100 RFDLVFLDPPYAK----ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp CEEEEEECCSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCEEEECCCCCc----chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 7999999876432 22455556665 99999999987543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=133.03 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=91.9
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Ccee
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKAD 132 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fD 132 (414)
+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++++..++ + .++.++.+|+++++++ ++||
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~-~-~~v~~~~~d~~~l~~~~~~fD 105 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG-H-QQVEYVQGDAEQMPFTDERFH 105 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCC-CCCSCTTCEE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcC-C-CceEEEEecHHhCCCCCCCEE
Confidence 44444556788999999999999999998875 89999999 59999999988765 4 3699999999998765 6899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|++....+++.+ +..++.++.++|||||.+++.
T Consensus 106 ~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 106 IVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp EEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEhhhhHhcCC---HHHHHHHHHHHcCCCCEEEEE
Confidence 9999888777765 678899999999999999875
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=134.44 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=89.6
Q ss_pred cCCC-CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeE
Q 015038 59 RADF-IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADI 133 (414)
Q Consensus 59 ~~~~-~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDv 133 (414)
.... ++.+|||+|||+|.+++.+++.+..+|+|+|++ .+++.|++++..++ +.++++++++|+.++.. +++||+
T Consensus 44 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~~~~~~~~~~fD~ 122 (259)
T 3lpm_A 44 SYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKKITDLIPKERADI 122 (259)
T ss_dssp CCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGGGGGTSCTTCEEE
T ss_pred hcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHHhhhhhccCCccE
Confidence 3344 688999999999999999999876689999999 58999999999987 88899999999998753 478999
Q ss_pred EEEcCCcccc-----CC------------hhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLL-----VN------------ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l-----~~------------e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+++++.... .. ...+..++..+.++|||||.+++
T Consensus 123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 9999875432 11 12356789999999999999976
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=127.31 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=89.1
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 51 YYAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 51 ~~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
+...+.+.+. ..++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+...
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~ 109 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQ 109 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC-CCcceEEEECcHHHHHHH
Confidence 3344444442 35778999999999999999988887799999999 59999999998876 66789999999987532
Q ss_pred ----CCceeEEEEcCCccccCChhhHHHHHHHH--HhccCCCeEEEcccc
Q 015038 128 ----PEKADILISEPMGTLLVNERMLETYVIAR--DRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ----~~~fDvIis~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~ 171 (414)
+++||+|+++++.+. .. ...++..+ .++|+|||.+++...
T Consensus 110 ~~~~~~~fD~i~~~~~~~~-~~---~~~~~~~l~~~~~L~~gG~l~~~~~ 155 (187)
T 2fhp_A 110 FYEEKLQFDLVLLDPPYAK-QE---IVSQLEKMLERQLLTNEAVIVCETD 155 (187)
T ss_dssp HHHTTCCEEEEEECCCGGG-CC---HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHhcCCCCCEEEECCCCCc-hh---HHHHHHHHHHhcccCCCCEEEEEeC
Confidence 478999999987432 22 34444555 889999999986543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-14 Score=129.44 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCC----cEEEEEcccccccCC-CceeE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGE----RITVIKGKVEEVELP-EKADI 133 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~----~i~vi~~d~~~~~~~-~~fDv 133 (414)
..++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..++ +.+ +++++.+|+...+.+ ++||+
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 105 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR-LPEMQRKRISLFQSSLVYRDKRFSGYDA 105 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGG-SCHHHHTTEEEEECCSSSCCGGGTTCSE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhc-cccccCcceEEEeCcccccccccCCCCE
Confidence 35678999999999999999998754 589999999 59999999987664 443 799999999776543 68999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|++..+.+++.+ ..+..+++.+.++|||||.++..
T Consensus 106 V~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 106 ATVIEVIEHLDE-NRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp EEEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEHHHHHhCCH-HHHHHHHHHHHHhhCCCEEEEEc
Confidence 999888777743 33678899999999999977644
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-14 Score=131.17 Aligned_cols=109 Identities=23% Similarity=0.286 Sum_probs=90.4
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.+...+...++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++... .+++++.+|+.+++.+ ++|
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCc
Confidence 455556666788999999999999999999887689999999 588888876432 3699999999987754 689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++....+++.+ +..+++.+.++|||||.+++..
T Consensus 109 D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 109 DLAYSSLALHYVED---VARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeccccccch---HHHHHHHHHHhcCcCcEEEEEe
Confidence 99999877776654 6788999999999999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=126.52 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=88.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-ELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~~~ 130 (414)
..+...+...++.+|||+|||+|.++..+++. ..+|+|+|+| .+++.|+++++.++ +.++++++.+|+.+. ...++
T Consensus 45 ~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeCchhhhcccCCC
Confidence 44555666678899999999999999999998 4589999999 59999999999886 666899999999884 33358
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+++... + .+ ++..+.+.|||||.+++...
T Consensus 123 ~D~v~~~~~~----~---~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 123 PEAVFIGGGG----S---QA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp CSEEEECSCC----C---HH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCEEEECCcc----c---HH-HHHHHHHhcCCCcEEEEEec
Confidence 9999986521 2 45 88899999999999986543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.5e-14 Score=129.86 Aligned_cols=113 Identities=27% Similarity=0.323 Sum_probs=92.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
+.+.+...+ .++.+|||+|||+|.++..+++. .+|+|+|+| .+++.|+++...++ .+++++.+|+.+++.++
T Consensus 23 ~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~ 95 (243)
T 3d2l_A 23 WVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELPE 95 (243)
T ss_dssp HHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCSS
T ss_pred HHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCCC
Confidence 444555554 34689999999999999999887 589999999 59999999987754 46999999999887778
Q ss_pred ceeEEEEcC-CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEP-MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++.. ..+++.+...+..+++.+.++|||||.++++.
T Consensus 96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 999999975 55666566668889999999999999998643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=134.54 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=89.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..++ + +++++.+|+.+...+++||+|++..+.
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKEN-L--NISTALYDINAANIQENYDFIVSTVVF 194 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCGGGCCCCSCEEEEEECSSG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEeccccccccCCccEEEEccch
Confidence 4788999999999999999999987 79999999 58999999998876 4 799999999998777899999999888
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+++. ......++..+.++|+|||.+++
T Consensus 195 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 195 MFLN-RERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCcEEEE
Confidence 7764 34477899999999999999765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-14 Score=129.47 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=91.6
Q ss_pred HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+...+. ..++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++...+ +++++.+|+.+++.++
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~~~ 108 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYDFEE 108 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCCCCS
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccCCCC
Confidence 44444443 4567899999999999999999883 4589999999 59999998876532 7999999999988778
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++....+++.+ .....+++++.++|||||.+++..
T Consensus 109 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 109 KYDMVVSALSIHHLED-EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp CEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEEeCccccCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999888777743 334568899999999999998654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-14 Score=127.44 Aligned_cols=114 Identities=20% Similarity=0.234 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+...+.+.+. ++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++...++ .+++++.+|+.+++.
T Consensus 26 ~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~ 99 (227)
T 1ve3_A 26 ETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSF 99 (227)
T ss_dssp HHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCS
T ss_pred HHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCC
Confidence 344455555543 478999999999999999999877 89999999 58999999988754 579999999998765
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++..+.++. ....+..++..+.++|||||.+++.
T Consensus 100 ~~~~~D~v~~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIVHF-EPLELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp CTTCEEEEEEESCGGGC-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcEEEEEEcCchHhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4 689999998763333 3344678899999999999999765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-14 Score=134.30 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=91.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
.++.+|||||||+|.++..+++.|..+|+|+|+| .+++.|+++....+ +..+++++.+|+.+.+. +++||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEEECCccccccCCCCCcCEEEECc
Confidence 5778999999999999999988887789999999 59999999988775 66789999999998765 46899999977
Q ss_pred Ccccc-CChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLL-VNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++. .+...+..++..+.++|||||.+++..
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 66553 445567889999999999999998653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.7e-14 Score=134.95 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=95.6
Q ss_pred HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
+.+.+.+. ..++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|++++..++ +.++++++.+|+.+++.+
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNMLDTPFDK 183 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhcCCCCC
Confidence 34555555 567889999999999999999987 65 79999999 59999999999886 778999999999988765
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++ + +..++..+.++|||||.+++..
T Consensus 184 ~~fD~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 184 GAVTASWNNESTMYV-D---LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp TCEEEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhC-C---HHHHHHHHHHHcCCCcEEEEEE
Confidence 789999998777776 3 7888999999999999998654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=124.37 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=90.3
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..++ + .+++++.+|+.+++.+++||+|+
T Consensus 26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~D~v~ 102 (199)
T 2xvm_A 26 EAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIEN-L-DNLHTRVVDLNNLTFDRQYDFIL 102 (199)
T ss_dssp HHTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECCGGGCCCCCCEEEEE
T ss_pred HHhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCC-C-CCcEEEEcchhhCCCCCCceEEE
Confidence 344445778999999999999999999876 79999999 58899999887764 3 35999999999877667899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+..+.+++. ......++..+.++|||||.+++
T Consensus 103 ~~~~l~~~~-~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 103 STVVLMFLE-AKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp EESCGGGSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EcchhhhCC-HHHHHHHHHHHHHhcCCCeEEEE
Confidence 988777764 34478899999999999999765
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=131.73 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
...+.+.+...++.+|||||||+|.++..+++ .|. +|+|+|+| .+++.|++++...+ +..+++++.+|+.+++ +
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~--~ 128 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD--E 128 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC--C
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCC--C
Confidence 34555666666788999999999999999984 466 89999999 59999999998776 6778999999998765 7
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++..+.+++.. ..+..++..+.++|||||.+++...
T Consensus 129 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp CCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999999887777643 3368889999999999999987643
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-14 Score=125.95 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++..+++. ..+|+|+|+| .+++.|++++..++ + .+++++.++...+. .+++||+|++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 46889999999999999999998 4589999999 59999999998876 5 68999998888753 257899999874
Q ss_pred Cccc------cCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 139 MGTL------LVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 139 ~~~~------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.... .........++..+.++|||||.+++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2111 112234567788999999999999876543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-14 Score=131.93 Aligned_cols=105 Identities=16% Similarity=-0.039 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHh----------CC-----CCCCcEEEEEcccccc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAG----------NP-----SLGERITVIKGKVEEV 125 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~----------n~-----~l~~~i~vi~~d~~~~ 125 (414)
.++.+|||+|||+|..+..+++.|. +|+|||+|+ |++.|+++... ++ ....+++++++|+.++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4678999999999999999999988 799999994 88988776431 00 0125799999999998
Q ss_pred cCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 126 ELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 126 ~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+.+ ++||+|++....+++. ......++..+.++|||||++++
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~-~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAIN-PGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSC-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence 764 7899999977666664 44567889999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=134.33 Aligned_cols=103 Identities=18% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|++++..|+ +.++++++++|+.++...++||+|+++++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHHhcccCCccEEEECCch
Confidence 4588999999999999999999987789999999 58999999999987 777899999999998767799999998763
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.. ..++..+.++|||||.+++..+.
T Consensus 203 ~~-------~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 203 RT-------HEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp SG-------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred hH-------HHHHHHHHHHCCCCeEEEEEEee
Confidence 22 44566778999999999876543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=133.02 Aligned_cols=114 Identities=18% Similarity=0.104 Sum_probs=96.2
Q ss_pred HHHHHhc----CCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 53 AAVIENR----ADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 53 ~ai~~~~----~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
..+...+ ...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|+++....+ +.++++++.+|+.+++
T Consensus 68 ~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 68 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCS
T ss_pred HHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEcCcccCC
Confidence 4455555 5567889999999999999999987 65 79999999 59999999888765 7778999999999987
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++ ++||+|++..+.+++.+ +..++.++.++|||||.+++...
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD---KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCEeEEEecchhhhcCC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 65 68999999887777765 68889999999999999987643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=123.84 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
.+..+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..++ + ++++++.+|+.+....
T Consensus 28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~ 105 (204)
T 3e05_A 28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFAPEGLDD 105 (204)
T ss_dssp HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCTTTTCTT
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCChhhhhhc
Confidence 33455666666788999999999999999999985 4689999999 59999999998876 5 6799999999765332
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++....+ .+..++..+.++|||||.+++..
T Consensus 106 ~~~~D~i~~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 106 LPDPDRVFIGGSGG------MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp SCCCSEEEESCCTT------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEECCCCc------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 6899999876443 36788899999999999998643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=139.04 Aligned_cols=108 Identities=20% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCC-----------------------------
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPS----------------------------- 110 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~----------------------------- 110 (414)
.++++|||||||+|.++..+++. +..+|+|+|+| .+++.|++++...+.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46889999999999999999987 55689999999 589999887654320
Q ss_pred ---------------------------CCCcEEEEEccccccc------CCCceeEEEEcCCccccC---ChhhHHHHHH
Q 015038 111 ---------------------------LGERITVIKGKVEEVE------LPEKADILISEPMGTLLV---NERMLETYVI 154 (414)
Q Consensus 111 ---------------------------l~~~i~vi~~d~~~~~------~~~~fDvIis~~~~~~l~---~e~~l~~~l~ 154 (414)
+..+|+++.+|+.... ..++||+|+|..+.+++. +...+..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 1158999999997643 347899999987765443 4445788999
Q ss_pred HHHhccCCCeEEEcc
Q 015038 155 ARDRFLVPMGKMFPS 169 (414)
Q Consensus 155 ~~~r~LkpgG~lip~ 169 (414)
.+.++|||||.+++.
T Consensus 205 ~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 205 RIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHhCCCcEEEEe
Confidence 999999999999875
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=128.77 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=83.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cC-CCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-EL-PEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~-~~~fDvIis~~~ 139 (414)
++.+|||+|||+|.+++.+++.++.+|+|+|+| .+++.|++++..++ + .+++++++|+.++ +. .++||+|+++++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence 678999999999999999888887799999999 59999999999886 5 6899999999874 32 368999999987
Q ss_pred ccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
.+ . .....++..+. ++|+|||++++...
T Consensus 132 ~~-~---~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 132 FR-R---GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp SS-T---TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC-C---CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 33 1 22455566664 46999999986643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=136.32 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHH--HcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAA--QAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a--~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+...+... ..++.+|||||||+|.++..++ ..+..+|+|+|+| .+++.|++++..++ +.++++++.+|+.+++.
T Consensus 108 ~~~~l~~~--l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~ 184 (305)
T 3ocj_A 108 FRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDAWKLDT 184 (305)
T ss_dssp HHHHHHHH--CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCGGGCCC
T ss_pred HHHHHHhh--CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECchhcCCc
Confidence 44444333 3578899999999999999885 3345589999999 59999999998876 77789999999999877
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++||+|++..+.+++.+......++..+.++|||||.+++..
T Consensus 185 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 185 REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7899999998888888776666678999999999999998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=137.32 Aligned_cols=116 Identities=21% Similarity=0.253 Sum_probs=91.3
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC--CcEEEEEcccccccCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG--ERITVIKGKVEEVELP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~--~~i~vi~~d~~~~~~~ 128 (414)
...+.+.+.. ++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...+ +. .+++++.+|+.+++.+
T Consensus 72 ~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~~ 148 (299)
T 3g2m_A 72 AREFATRTGP-VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDMSAFALD 148 (299)
T ss_dssp HHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBTTBCCCS
T ss_pred HHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCchhcCCcC
Confidence 3444454443 345999999999999999999876 69999999 59999999988653 22 5799999999998877
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++.....+..+......+++.+.++|||||.+++..
T Consensus 149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 899999964332333455557889999999999999998764
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=121.17 Aligned_cols=115 Identities=18% Similarity=0.258 Sum_probs=93.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC-cEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE-RITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~-~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.|++++..++ +.+ +++++.+|+.+...+++
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECchhcccccCC
Confidence 44555555567889999999999999999988 4589999999 58899999998875 544 59999999988554578
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+++++.+. .......++..+.++|+|||.+++...
T Consensus 120 ~D~v~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 120 YNKIITNPPIRA--GKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp EEEEEECCCSTT--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEECCCccc--chhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 999999876543 234577889999999999999976543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=131.98 Aligned_cols=115 Identities=14% Similarity=0.114 Sum_probs=96.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
...+.+.+...++.+|||||||+|.++..+++. |. +|+|+|+| .+++.|++++...+ +.++++++.+|+.+++ +
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~--~ 154 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA--E 154 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC--C
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChHHCC--C
Confidence 345556666667889999999999999999987 76 79999999 59999999998876 6778999999998864 7
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++..+.+++.. ..+..++..+.++|||||.+++...
T Consensus 155 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 155 PVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp CCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8999999877776643 3478889999999999999987543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=127.07 Aligned_cols=110 Identities=22% Similarity=0.311 Sum_probs=92.0
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~ 130 (414)
+.+.+...++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..++ +. +++++.+|+.+++.+ ++
T Consensus 29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-LK-NVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-CT-TEEEEECBTTBCSSCSSC
T ss_pred HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEecccccCCCCCCC
Confidence 4444555678899999999999999999875 3489999999 59999999988765 43 799999999987765 67
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|++....+++.+ ...+++.+.++|||||.+++.
T Consensus 107 fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 107 VDFIFMAFTFHELSE---PLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EEEEEEESCGGGCSS---HHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEeehhhhhcCC---HHHHHHHHHHHhCCCeEEEEE
Confidence 999999887777754 678899999999999999875
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=130.57 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=86.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcC-Cc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP-MG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~-~~ 140 (414)
++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. +++++.+|+.+++.+++||+|++.. ..
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~~l 121 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-------DAVLHHGDMRDFSLGRRFSAVTCMFSSI 121 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-------TSEEEECCTTTCCCSCCEEEEEECTTGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-------CCEEEECChHHCCccCCcCEEEEcCchh
Confidence 568999999999999999999876 79999999 58898888632 5899999999987778999999986 67
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++.+...+..++..+.++|||||.+++.
T Consensus 122 ~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 122 GHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp GGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 77766666888999999999999999876
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=129.29 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
...+...+...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..+ .+++++.+|+.+++.+ +
T Consensus 82 ~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~ 157 (254)
T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSS
T ss_pred HHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCCCC
Confidence 34555555556788999999999999999998877789999999 5899999886542 5799999999988765 6
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++....+++.. ..+..++..+.++|||||.+++..
T Consensus 158 ~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 158 TYDLIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp CEEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 8999999887777643 447888999999999999998764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=130.60 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHhc-CCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENR-ADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+.+.+ ...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|++++...+ .+++++.+|+.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~v~~~~~d~~~~~~~ 87 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP---YDSEFLEGDATEIELN 87 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS---SEEEEEESCTTTCCCS
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEcchhhcCcC
Confidence 3344333 3457789999999999999999987 2 3589999999 48899999988754 3899999999998877
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++||+|++..+.+++.+ ...++..+.++|||||.+++....
T Consensus 88 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTT---PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECChhhcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence 89999999888777765 578899999999999999865543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=123.73 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis 136 (414)
.++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++ +..+++++.+|+.++. .+++||+|++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 56789999999999999999987 34589999999 59999999999876 6678999999998874 3478999999
Q ss_pred cCCcc------ccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGT------LLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~------~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.. ..........++..+.++|||||.+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 86431 22223345678899999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-14 Score=132.70 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCC-C--------------------------
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPS-L-------------------------- 111 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~-l-------------------------- 111 (414)
...++.+|||||||+|.++..++..|+.+|+|+|+| .|++.|+++++.+.. .
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 445778999999999999888888888789999999 499999988765420 0
Q ss_pred CCcEE-EEEcccccccC-----CCceeEEEEcCCcccc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 112 GERIT-VIKGKVEEVEL-----PEKADILISEPMGTLL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 112 ~~~i~-vi~~d~~~~~~-----~~~fDvIis~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++. ++.+|+.+..+ .++||+|++..+.+++ .+...+..++.++.++|||||.+++.
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 01344 88999987421 3589999998887764 34445778899999999999999876
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=120.44 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VELP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~~ 128 (414)
+..+...+...++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++ +.+++ ++.+|..+ ++..
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHhhhhcc
Confidence 345555556677889999999999999999987 34589999999 49999999998876 66688 88888854 3322
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++....++ ..+++.+.+.|||||.+++..
T Consensus 92 ~~~~D~i~~~~~~~~-------~~~l~~~~~~L~~gG~l~~~~ 127 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA-------PGVFAAAWKRLPVGGRLVANA 127 (178)
T ss_dssp CSCCSEEEECC-TTC-------TTHHHHHHHTCCTTCEEEEEE
T ss_pred CCCCCEEEECCcccH-------HHHHHHHHHhcCCCCEEEEEe
Confidence 78999998655443 456778889999999997653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.6e-14 Score=127.72 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++.. .+++++.+|+.+++.+++||+|++..+.
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~~l 116 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVPTSIDTIVSTYAF 116 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCCSCCSEEEEESCG
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCCCCeEEEEECcch
Confidence 4788999999999999999999876 79999999 58888888743 4689999999998766899999998877
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+.. ...++..+.++|||||.+++..
T Consensus 117 ~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 117 HHLTDDE-KNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp GGSCHHH-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCChHH-HHHHHHHHHHhcCCCCEEEEEe
Confidence 7775532 3448899999999999998763
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=126.96 Aligned_cols=109 Identities=22% Similarity=0.293 Sum_probs=91.7
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeE
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADI 133 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDv 133 (414)
...+...++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++..++ + .+++++.+|+++++.+ ++||+
T Consensus 14 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~ 90 (239)
T 1xxl_A 14 IKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTAESLPFPDDSFDI 90 (239)
T ss_dssp HHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBTTBCCSCTTCEEE
T ss_pred HHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcC-C-CCeEEEecccccCCCCCCcEEE
Confidence 3445556889999999999999999998875 79999999 59999999887764 3 3699999999988765 68999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|++....+++.+ +..++.++.++|||||.+++..
T Consensus 91 v~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 91 ITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCchhhccC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 999877777655 6788999999999999998753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-14 Score=133.23 Aligned_cols=105 Identities=22% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
.+.|..... .+.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++ ..+++++++++++++++ +
T Consensus 30 ~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~--------~~~v~~~~~~~e~~~~~~~ 98 (257)
T 4hg2_A 30 FRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR--------HPRVTYAVAPAEDTGLPPA 98 (257)
T ss_dssp HHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC--------CTTEEEEECCTTCCCCCSS
T ss_pred HHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh--------cCCceeehhhhhhhcccCC
Confidence 344544442 456899999999999999999876 79999999 48876642 14699999999998876 6
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++....|++. .+.++.++.|+|||||.+++..+
T Consensus 99 sfD~v~~~~~~h~~~----~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 99 SVDVAIAAQAMHWFD----LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CEEEEEECSCCTTCC----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccEEEEeeehhHhh----HHHHHHHHHHHcCCCCEEEEEEC
Confidence 899999987776653 56788999999999999976543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=126.91 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++... +++++.+|++++..+++||+|++..+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~------~v~~~~~d~~~~~~~~~fD~v~~~~~l 113 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD------GITYIHSRFEDAQLPRRYDNIVLTHVL 113 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS------CEEEEESCGGGCCCSSCEEEEEEESCG
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC------CeEEEEccHHHcCcCCcccEEEEhhHH
Confidence 4677899999999999999999877 69999999 588998887432 699999999988555789999998888
Q ss_pred cccCChhhHHHHHHHHH-hccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARD-RFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~-r~LkpgG~lip~~ 170 (414)
+++.+ +..+++++. ++|||||.+++..
T Consensus 114 ~~~~~---~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 114 EHIDD---PVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp GGCSS---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HhhcC---HHHHHHHHHHHhcCCCCEEEEEc
Confidence 87765 578899999 9999999998753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=128.40 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-CceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-EKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++...++ .+++++.+|++++ +++ ++||+|+++
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 4678999999999999999988776689999999 59999999887653 5799999999987 555 689999993
Q ss_pred CCc--cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMG--TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~--~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
... .........+.++.++.++|||||++++..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 222 112223345678899999999999997653
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=129.86 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=92.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHH--cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQ--AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~--~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
+.+..... .++.+|||||||+|.++..+++ .+..+|+|+|+| .+++.|++++..+++...+++++.+|+++++.+
T Consensus 27 ~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 105 (299)
T 3g5t_A 27 KMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLG 105 (299)
T ss_dssp HHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGC
T ss_pred HHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccc
Confidence 44444432 4788999999999999999997 356689999999 599999999887611457899999999987643
Q ss_pred ------CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 ------EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ------~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++....+++ + +..++..+.++|||||.+++..
T Consensus 106 ~~~~~~~~fD~V~~~~~l~~~-~---~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 106 ADSVDKQKIDMITAVECAHWF-D---FEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp TTTTTSSCEEEEEEESCGGGS-C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCCCeeEEeHhhHHHHh-C---HHHHHHHHHHhcCCCcEEEEEe
Confidence 589999998887777 3 7889999999999999998743
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-14 Score=126.47 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
+...+...+ .++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++... ..+++++.+|+.+++.+
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~----~~~i~~~~~d~~~~~~~~ 105 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH----VPQLRWETMDVRKLDFPS 105 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----CTTCEEEECCTTSCCSCS
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----CCCcEEEEcchhcCCCCC
Confidence 444444443 5678999999999999999999987689999999 488999888653 24699999999987655
Q ss_pred CceeEEEEcCCccccC------------ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLV------------NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~------------~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++. +......++..+.++|||||.+++..
T Consensus 106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 6899999976654443 13346788999999999999997653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=124.86 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=91.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC----CCcEEEEEcccccccCC-CceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL----GERITVIKGKVEEVELP-EKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l----~~~i~vi~~d~~~~~~~-~~fDvIi 135 (414)
.++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++...++ + ..+++++.+|+.+++.+ ++||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecccccCCCCCceeEEE
Confidence 3678999999999999999999976 79999999 58899999887654 3 34799999999988764 6899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..+.+++.+......+++.+.++|||||.+++..
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 98888888776656689999999999999998764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=127.07 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
+...+...+ .++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++. ...+++++.+|+.+++.+
T Consensus 43 ~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~ 114 (242)
T 3l8d_A 43 IIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG-----EGPDLSFIKGDLSSLPFEN 114 (242)
T ss_dssp HHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT-----CBTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc-----ccCCceEEEcchhcCCCCC
Confidence 344455544 3678999999999999999999976 79999999 4888887763 235799999999998764
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++.+ ...++..+.++|+|||.+++..
T Consensus 115 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTEE---PLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp TCEEEEEEESCTTSSSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccEEEEcChHhhccC---HHHHHHHHHHHhCCCeEEEEEE
Confidence 78999999877777654 6788999999999999998764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=128.24 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=94.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
...+.......++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|++++..++ . .+++++.+|+.+++.+
T Consensus 26 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~ 103 (276)
T 3mgg_A 26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG-I-KNVKFLQANIFSLPFED 103 (276)
T ss_dssp HHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGCCSCT
T ss_pred HHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CCcEEEEcccccCCCCC
Confidence 3444444445678899999999999999999884 4589999999 59999999998875 4 4699999999988754
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++.+ +..++..+.++|||||.+++..
T Consensus 104 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 104 SSFDHIFVCFVLEHLQS---PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp TCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEEechhhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 78999999888887766 5688899999999999998754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=128.21 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+ ...+++++.+|+.++..+++||+|++..+.
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFTWRPTELFDLIFDYVFF 142 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTTCCCSSCEEEEEEESST
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhcCCCCCCeeEEEEChhh
Confidence 3456999999999999999988665 69999999 58999999987654 456899999999998766799999998777
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++. ......++..+.++|||||.+++..
T Consensus 143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 171 (235)
T 3lcc_A 143 CAIE-PEMRPAWAKSMYELLKPDGELITLM 171 (235)
T ss_dssp TTSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHHCCCCcEEEEEE
Confidence 7665 3447889999999999999998643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=130.27 Aligned_cols=109 Identities=27% Similarity=0.303 Sum_probs=86.9
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHh---CCCCCCcEEEEEccccccc-------
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAG---NPSLGERITVIKGKVEEVE------- 126 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~---n~~l~~~i~vi~~d~~~~~------- 126 (414)
....++.+|||+|||+|.+++.+++.+ ..+|+|+|++ .+++.|++++.. ++ +.++++++++|+.++.
T Consensus 32 ~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 32 VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHHHHHHTT
T ss_pred hcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhhhhhhhc
Confidence 344567899999999999999999875 4589999999 589999999988 76 7778999999998872
Q ss_pred C-CCceeEEEEcCCccccC---------------ChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 L-PEKADILISEPMGTLLV---------------NERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~-~~~fDvIis~~~~~~l~---------------~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+ +++||+|+++++..... ....+..++..+.++|||||.+++
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 2 46899999997754321 112267889999999999999975
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=124.37 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCccHHH-HHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILS-LFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls-~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||+|||+|.++ ..+++.|. +|+|+|+| .+++.|++++..++ .+++++.+|+.+++.+ ++||+|++..
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYSYG 97 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEECS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEEcC
Confidence 46789999999999874 44555555 79999999 59999999887643 4689999999988764 6899999977
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..+++. ......++..+.++|||||.+++...
T Consensus 98 ~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 98 TIFHMR-KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp CGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 666653 45578899999999999999987643
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-13 Score=124.50 Aligned_cols=102 Identities=22% Similarity=0.331 Sum_probs=86.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
..++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++ .. ...+++++.+|+++++.+ ++||+|++..
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~--~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AG--VDRKVQVVQADARAIPLPDESVHGVIVVH 112 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TT--SCTTEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hc--cCCceEEEEcccccCCCCCCCeeEEEECC
Confidence 35678999999999999999998865 79999999 5999999887 22 346799999999988754 6899999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+++.+ ...++..+.++|||||.+++.
T Consensus 113 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 113 LWHLVPD---WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CGGGCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCC---HHHHHHHHHHHCCCCcEEEEE
Confidence 7777654 678889999999999999876
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=120.93 Aligned_cols=100 Identities=19% Similarity=0.077 Sum_probs=79.7
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~fDvIis 136 (414)
++.+|||+|||+|.++..+++.+.. |+|+|+| .+++.|++++..++ + +++++++|+.+... .++||+|++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~ 116 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE-AVLVEKDPEAVRLLKENVRRTG-L--GARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE-EEEECCCHHHHHHHHHHHHHHT-C--CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHHcC-C--ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence 6789999999999999999999875 9999999 59999999998875 4 79999999987421 237999999
Q ss_pred cCCccccCChhhHHHHHHHHH--hccCCCeEEEcccc
Q 015038 137 EPMGTLLVNERMLETYVIARD--RFLVPMGKMFPSVG 171 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~ 171 (414)
+++.+ ... ..++..+. ++|+|||.+++...
T Consensus 117 ~~~~~-~~~----~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 117 APPYA-MDL----AALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CCCTT-SCT----THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred CCCCc-hhH----HHHHHHHHhhcccCCCcEEEEEeC
Confidence 88755 222 33344444 99999999987543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=126.88 Aligned_cols=99 Identities=21% Similarity=0.193 Sum_probs=82.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~fDvIis 136 (414)
++.+|||||||+|.+++.+++. ...+|+|+|+| .+++.|++++..++ +. +++++++|++++.. .++||+|++
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEeccHHHhcccccccCCccEEEE
Confidence 6789999999999999999864 34589999999 59999999988875 54 59999999988764 368999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+ . .+..++..+.++|||||.+++..
T Consensus 148 ~~~----~---~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 148 RAV----A---RLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp ECC----S---CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ecc----C---CHHHHHHHHHHhcCCCCEEEEEe
Confidence 652 2 26888999999999999998653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-13 Score=121.53 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=85.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++ .+ . .+++++.+|+.++..+++||+|++...
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~-~-~~~~~~~~d~~~~~~~~~~D~v~~~~~ 116 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HG-L-DNVEFRQQDLFDWTPDRQWDAVFFAHW 116 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GC-C-TTEEEEECCTTSCCCSSCEEEEEEESC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cC-C-CCeEEEecccccCCCCCceeEEEEech
Confidence 44667999999999999999999876 79999999 58888877 21 2 569999999998844579999999887
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+++.+ .....+++.+.++|||||.+++...
T Consensus 117 l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 117 LAHVPD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCCH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 777654 3357888999999999999987643
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=128.41 Aligned_cols=113 Identities=18% Similarity=0.275 Sum_probs=92.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
..+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|+++.... .+++++.+|+.+++.+ +
T Consensus 45 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~ 119 (266)
T 3ujc_A 45 KKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPEN 119 (266)
T ss_dssp HHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCTT
T ss_pred HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCCC
Confidence 44555566667889999999999999999987 54 79999999 5889988875442 5799999999988764 7
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++..+.+++. ...+..++..+.++|||||.+++...
T Consensus 120 ~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 120 NFDLIYSRDAILALS-LENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp CEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEeHHHHHHhcC-hHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 899999987777763 34578899999999999999987643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-13 Score=123.26 Aligned_cols=106 Identities=24% Similarity=0.246 Sum_probs=84.2
Q ss_pred CCCCCEEEEECCC-ccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-C-CCceeEEEE
Q 015038 61 DFIGRVVVDVGAG-SGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-L-PEKADILIS 136 (414)
Q Consensus 61 ~~~~~~VLDiGcG-tG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~-~~~fDvIis 136 (414)
..++.+|||+||| +|.++..+++.+..+|+|+|+| .+++.|++++..++ + +++++.+|+..+. . +++||+|++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~fD~I~~ 129 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGIIKGVVEGTFDVIFS 129 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCSSTTTCCSCEEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchhhhhcccCceeEEEE
Confidence 3578899999999 9999999999844579999999 59999999999886 4 7999999975442 2 378999999
Q ss_pred cCCccccCC----------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVN----------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~----------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++.+.... ...+..++..+.++|||||.+++.
T Consensus 130 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 130 APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp CCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 987544322 122478899999999999999763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=128.15 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=87.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..++ ..+++++.+|+.++..+ ++||+|++....
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence 578999999999999999888876689999999 59999999877642 34699999999888765 489999998777
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+ ..+..++..+.++|||||.+++..
T Consensus 157 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 157 GHLTD-QHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEE
Confidence 76654 335688899999999999998754
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=123.80 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=83.4
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
+.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|+++. .+++++.+|+.+++.+ ++||+|++....+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSDSPKRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGGSCCCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccccccCCCCeEEEEehhhHh
Confidence 78999999999999999999977 69999999 5888888762 2589999999998765 7899999987777
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++.. ..+..++..+.++|||||.+++..
T Consensus 114 ~~~~-~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 114 HMGP-GELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp TCCT-TTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 7652 347889999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=122.52 Aligned_cols=99 Identities=29% Similarity=0.315 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|++++..++ +.+ ++++.+|+.+.. +++||+|+++.+.
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~~~-~~~fD~i~~~~~~ 135 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLADV-DGKFDLIVANILA 135 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTTTC-CSCEEEEEEESCH
T ss_pred cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccccC-CCCceEEEECCcH
Confidence 4678999999999999999999888799999999 59999999998876 544 999999998753 5799999997654
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+. +..++..+.++|+|||.+++.
T Consensus 136 ~~------~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 136 EI------LLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp HH------HHHHGGGSGGGEEEEEEEEEE
T ss_pred HH------HHHHHHHHHHhcCCCCEEEEE
Confidence 33 577888899999999999864
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-13 Score=117.15 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-ELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~~ 128 (414)
....+.......++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|++++..++ +..+++++.+|+.+. +..
T Consensus 21 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 21 VRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecCHHHhcccC
Confidence 33445555566788899999999999999999988 689999999 58899999998876 667899999999872 222
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++....+ .+..++..+.++|+|||.+++..
T Consensus 99 ~~~D~v~~~~~~~------~~~~~l~~~~~~l~~gG~l~~~~ 134 (192)
T 1l3i_A 99 PDIDIAVVGGSGG------ELQEILRIIKDKLKPGGRIIVTA 134 (192)
T ss_dssp CCEEEEEESCCTT------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCEEEECCchH------HHHHHHHHHHHhcCCCcEEEEEe
Confidence 5899999875432 25788899999999999997654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=129.07 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=88.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.. .+|.+|||+|||+|.+++.+|+.|+.+|+|+|+|+ .++.++++++.|+ +.++++++++|+.++...+.|
T Consensus 117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~-v~~~v~~~~~D~~~~~~~~~~ 193 (278)
T 3k6r_A 117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGENIA 193 (278)
T ss_dssp HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCcHHHhccccCC
Confidence 3444443 47899999999999999999999988999999995 7799999999998 899999999999998777899
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
|.|+++++... ..++..+.++||+||.+.
T Consensus 194 D~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 194 DRILMGYVVRT-------HEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp EEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCcH-------HHHHHHHHHHcCCCCEEE
Confidence 99999876543 234455668899999874
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=127.68 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
+..++.+.. ..++.+|||||||+|..+..+++.+..+|+|||+|+ +++.|+++....+ .++.++.+|++++. +
T Consensus 49 ~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~ 124 (236)
T 3orh_A 49 YMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTL 124 (236)
T ss_dssp HHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGS
T ss_pred HHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccc
Confidence 334444433 357889999999999999999988666899999994 9999999987754 57899999987753 2
Q ss_pred C-CceeEEEEcCCcc--ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGT--LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~--~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||.|+.+.+.. ........+.++.++.|+|||||++++.
T Consensus 125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 3 6899999876533 2333445788899999999999999754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=127.79 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----- 126 (414)
+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++..+ ++..++.++.
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR--------CVTIDLLDITAEIPK 105 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS--------CCEEEECCTTSCCCG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc--------cceeeeeeccccccc
Confidence 4455666667889999999999999999999876 79999999 5999999986543 1223333322
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++||+|+++.+.+++.. .....++..+.++| |||+++++.
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~-~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTT-EEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCH-HHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred ccCCCccEEEEhhhhHhCCH-HHHHHHHHHHHHhC-cCcEEEEEe
Confidence 2468999999887776643 34677888999999 999998764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=134.29 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=91.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCC--cEEEEEcccccccCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGE--RITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~--~i~vi~~d~~~~~~~ 128 (414)
+.+.+.+...++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+ +++.|++++..++ +.+ +++++.+|+.+...+
T Consensus 212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ng-l~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGGGEEEEECSTTTTCCT
T ss_pred HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcC-CCcCceEEEEechhhccCCC
Confidence 345666666677899999999999999999985 56899999995 8899999998876 543 588899999885444
Q ss_pred CceeEEEEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++++.+... .......++..+.++|||||.+++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv 333 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 333 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 7899999999876421 2233457889999999999999874
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=125.92 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=83.3
Q ss_pred cCCCCCCEEEEECCCccHHH-HHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 59 RADFIGRVVVDVGAGSGILS-LFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls-~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
....++.+|||||||+|.++ +.+++....+|+|+|+| +|++.|+++++..+ + ++++++++|+.+++ .++||+|++
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g-l-~~v~~v~gDa~~l~-d~~FDvV~~ 194 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG-V-DGVNVITGDETVID-GLEFDVLMV 194 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT-C-CSEEEEESCGGGGG-GCCCSEEEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC-C-CCeEEEECchhhCC-CCCcCEEEE
Confidence 45578899999999998665 55666533479999999 59999999998876 6 78999999999875 578999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
... . .....+++++.+.|||||++++.
T Consensus 195 ~a~---~---~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 195 AAL---A---EPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CTT---C---SCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCC---c---cCHHHHHHHHHHHcCCCcEEEEE
Confidence 543 2 22678889999999999999864
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-13 Score=121.37 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++. ++.++.+|+.+++..++||+|++..+.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~fD~v~~~~~l 112 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL--------GRPVRTMLFHQLDAIDAYDAVWAHACL 112 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCCCCSCEEEEEECSCG
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc--------CCceEEeeeccCCCCCcEEEEEecCch
Confidence 3578999999999999999999876 79999999 5889888876 256788999988866899999998877
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++. ...+..+++.+.++|||||.+++.
T Consensus 113 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 113 LHVP-RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC-HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7765 344788999999999999999875
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=122.74 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcC-C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP-M 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~-~ 139 (414)
.++.+|||+|||+|.++..+++.+. +|+|+|+| .+++.|+++. .+++++.+|+.+++.+++||+|+|.. .
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 110 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRLGRKFSAVVSMFSS 110 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCCSSCEEEEEECTTG
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHcccCCCCcEEEEcCch
Confidence 4678999999999999999999876 79999999 5888888763 24899999999887777999999643 5
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.+...+..++..+.++|||||.+++..
T Consensus 111 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 111 VGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp GGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5566565667889999999999999998763
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=132.31 Aligned_cols=118 Identities=26% Similarity=0.311 Sum_probs=94.6
Q ss_pred HHHHHHHHhc--CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENR--ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~--~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.+.+.+.... ...++.+|||+|||+|.++..+++.++ +|+|+|+| .+++.|++++..++ + +++++.+|+.+..
T Consensus 218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~-~--~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANA-L--KAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTT-C--CCEEEECSTTTTS
T ss_pred HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC-C--CeEEEEcchhhcc
Confidence 3444444433 234678999999999999999999976 79999999 58899999999876 3 3899999999876
Q ss_pred CC-CceeEEEEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 LP-EKADILISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+ ++||+|+++++.+... .......++..+.++|||||.+++...
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 55 7999999998877522 234577889999999999999987543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=129.00 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC-----cEEEEEccc------cccc---C
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE-----RITVIKGKV------EEVE---L 127 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~-----~i~vi~~d~------~~~~---~ 127 (414)
++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++....+ ... ++++..+|+ +++. .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhcccchhhhhhhcccc
Confidence 478999999999986666666666689999999 59999999876543 211 367888877 3331 2
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.++||+|+|....+++.+......+++++.++|||||.++++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~ 169 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITT 169 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 3689999998776665433345789999999999999998653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=125.03 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~fDvIi 135 (414)
.++.+|||||||+|..++.++.. +..+|+++|+| .+++.|++++..++ +. +++++++|++++.. .++||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~-~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG-LK-GARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-ceEEEECcHHHhhcccccCCCceEEE
Confidence 45789999999999999999986 45689999999 59999999998876 54 49999999998764 26899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|..+. + +..++..+.++|||||.++...+
T Consensus 157 s~a~~----~---~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 157 ARAVA----P---LCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp EESSC----C---HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ECCcC----C---HHHHHHHHHHHcCCCeEEEEEeC
Confidence 96432 2 57888999999999999875443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=131.53 Aligned_cols=106 Identities=22% Similarity=0.098 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC-cEEEEEcccccccC-----CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE-RITVIKGKVEEVEL-----PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~-~i~vi~~d~~~~~~-----~~~fDvI 134 (414)
.++.+|||+|||+|.+++.+++.|+ +|++||+| .+++.|++++..++ +.+ +++++++|+.++.. .++||+|
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~g-l~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 3577999999999999999999988 89999999 59999999999886 665 59999999988632 4689999
Q ss_pred EEcCCccccC-------ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLV-------NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~-------~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++++..... .......++..+.++|+|||.+++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 9998843321 1234678889999999999997654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=120.88 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++ +.+ ++++.+|+.+....++||+|+++.+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~~~~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-LEN-IEPVQSRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-CSS-EEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCC-eEEEecchhhCCccCCcCEEEEecc-
Confidence 4789999999999999999986 44589999999 58899999998875 544 9999999998765578999998542
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. .+..++..+.++|+|||.+++..
T Consensus 142 ---~---~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 ---A---SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---S---SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---C---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 1 25788899999999999998753
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=127.12 Aligned_cols=104 Identities=20% Similarity=0.278 Sum_probs=86.9
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. .+++++.+|+++++.+++||+
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~fD~ 120 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRVDKPLDA 120 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCCSSCEEE
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCcCCCcCE
Confidence 33444456788999999999999999999654 79999999 5888888763 357899999999877789999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|++..+.+++.+ +..++.++.++|||||.+++.
T Consensus 121 v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 121 VFSNAMLHWVKE---PEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEcchhhhCcC---HHHHHHHHHHhcCCCcEEEEE
Confidence 999888777765 678899999999999999864
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-13 Score=127.53 Aligned_cols=107 Identities=11% Similarity=0.015 Sum_probs=87.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCC-----CCCcEEEEEccccccc----C---CC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPS-----LGERITVIKGKVEEVE----L---PE 129 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~-----l~~~i~vi~~d~~~~~----~---~~ 129 (414)
++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|+++....+. ...+++++.+|+++.. + ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 677999999999999999998766789999999 599999888765310 1247999999999875 3 24
Q ss_pred ceeEEEEcCCcccc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|....+++ .+...+..++..+.++|||||.+++.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGT 154 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 89999998877776 56566789999999999999999865
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=122.96 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---CCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---PEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---~~~fDvIis 136 (414)
.++++|||||||+|..+..+++.. ..+|+++|++ .+++.|++++...+ +.++++++.+|+.+... +++||+|++
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 467899999999999999999853 4589999999 59999999999886 77789999999987533 578999998
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.. ......++..+.++|||||++++..
T Consensus 149 ~~~------~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 149 DAA------KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ETT------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cCc------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 642 2225678899999999999998743
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.1e-13 Score=120.14 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=80.0
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++.+|||+|||+|.++..+ +..+|+|+|+| .+++.|+++. .+++++.+|+.+++.+ ++||+|++....
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 7889999999999998877 55589999999 5888888764 3588999999988765 689999998777
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+ +..++.++.++|||||.+++..
T Consensus 106 ~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 106 EFVED---VERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp TTCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence 77654 6788999999999999998653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-14 Score=132.50 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT 141 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~ 141 (414)
++.+|||+|||+|.++..+++.| .+|+|+|+| .+++.|++++..++ +.++++++++|+.++..+++||+|+++++.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 68899999999999999999988 589999999 59999999999876 6678999999999887667999999998877
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.... ...+..+.++|+|||.+++.
T Consensus 156 ~~~~~---~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPDYA---TAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGGGG---GSSSBCTTTSCSSCHHHHHH
T ss_pred Ccchh---hhHHHHHHhhcCCcceeHHH
Confidence 65442 22445678999999987554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=121.55 Aligned_cols=117 Identities=12% Similarity=0.168 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEE 124 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~ 124 (414)
..+...+.......++.+|||||||+|..++.++++ + ..+|+++|+| ++++.|+++++.++ +. ++++++.+|+.+
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~~i~~~~gda~~ 120 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-YSPSRVRFLLSRPLD 120 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCcCcEEEEEcCHHH
Confidence 344455555443334459999999999999999985 2 4589999999 59999999999887 76 789999999987
Q ss_pred cc--C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 125 VE--L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 125 ~~--~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+. + +++||+|+++.. ......++..+.++|||||+++++...
T Consensus 121 ~l~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVS------PMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp HGGGSCTTCEEEEEECCC------TTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHHhcCCCcCeEEEcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 62 3 478999998642 222566788899999999999876543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.5e-13 Score=132.14 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=90.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCC-cEEEEEcccccccC-----CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGE-RITVIKGKVEEVEL-----PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~-~i~vi~~d~~~~~~-----~~~fDvI 134 (414)
.++++|||+|||+|.+++.+++.|+++|+|+|+| .+++.|+++++.|+ +.+ +++++.+|+.++.. .++||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 4678999999999999999999888899999999 59999999999987 665 89999999987421 3489999
Q ss_pred EEcCCccc-----cCC-hhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 135 ISEPMGTL-----LVN-ERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 135 is~~~~~~-----l~~-e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
+++++... ... ...+..++..+.++|+|||.++++.++.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99988631 111 2335567788899999999998876653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=117.67 Aligned_cols=111 Identities=21% Similarity=0.134 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
.....+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|++++..++ +. +++++.+|+.+...+
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLD-LH-NVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcC-CC-ceEEEECCcccCCcc
Confidence 344555666666788999999999999999999985 479999999 59999999998875 44 799999999875433
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++||+|++....+++.. .+.+.|||||++++....
T Consensus 141 ~~~~D~i~~~~~~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 68999999866655543 356899999999876544
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-13 Score=124.74 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
+.+.+... ..++.+|||+|||+|.+++.+++.|+ +|+|+|+++ +++.|++++..++ .. ++++.+|+.+.-..+
T Consensus 110 ~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~-~~--v~~~~~d~~~~~~~~ 183 (254)
T 2nxc_A 110 ALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG-VR--PRFLEGSLEAALPFG 183 (254)
T ss_dssp HHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT-CC--CEEEESCHHHHGGGC
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEECChhhcCcCC
Confidence 33444443 35678999999999999999999988 899999995 8899999999886 44 899999988742246
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+++.+.+ .+..++..+.++|||||.++++
T Consensus 184 ~fD~Vv~n~~~~------~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 184 PFDLLVANLYAE------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp CEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCcHH------HHHHHHHHHHHHcCCCCEEEEE
Confidence 899999976533 2577888999999999999874
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=122.46 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=87.7
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. .+++++.+|+++++.+++|
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~f 96 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWKPAQKA 96 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCCCSSCE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcCccCCc
Confidence 3445555567789999999999999999987 23479999999 5888888761 3589999999988745789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++....+++.+ +..++..+.++|||||.+++..
T Consensus 97 D~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 97 DLLYANAVFQWVPD---HLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEEEEESCGGGSTT---HHHHHHHHGGGEEEEEEEEEEE
T ss_pred CEEEEeCchhhCCC---HHHHHHHHHHhcCCCeEEEEEe
Confidence 99999888777754 7788999999999999998764
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=123.19 Aligned_cols=106 Identities=12% Similarity=0.189 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-----Cce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-----EKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-----~~f 131 (414)
.++++|||||||+|..++.++++ ...+|+++|++ .+++.|++++..++ +.++++++.+|+.+.. ++ ++|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 46789999999999999999985 24589999999 59999999998876 7778999999986641 22 589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
|+|+++...+... ....++..+ ++|||||+++++...
T Consensus 136 D~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999875443321 133455666 999999999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=124.64 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCccHHHHHHH-----HcCCCeE--EEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc------
Q 015038 62 FIGRVVVDVGAGSGILSLFAA-----QAGAKHV--YAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE------ 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a-----~~g~~~V--~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~------ 126 (414)
.++.+|||||||+|.++..++ +.+..+| +|+|+| +|++.|++++...+.+. .++.+..++++++.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997664322 2222334 999999 59999999887542122 13445567776553
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++||+|++..+.+++.+ +..+++++.++|||||.+++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEE
Confidence 2478999999988888876 778899999999999999875
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=119.47 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc----cCCCceeEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKADIL 134 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~~~~fDvI 134 (414)
..++.+|||+|||+|.++..+++. |..+|+|+|+|+ |++.+.+..+.. .++.++.+|+.+. ..+++||+|
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccccceeEE
Confidence 457789999999999999988876 345899999995 776665555542 3588999998774 334789999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+++.. .......++.++.++|||||.+++.
T Consensus 131 ~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 131 YQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecc-----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 99732 2233456688999999999999876
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=122.29 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 48 TGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 48 ~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
++.+...+...+. .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++ +. +++++.+|+.+.
T Consensus 95 te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~~-~v~~~~~d~~~~ 171 (276)
T 2b3t_A 95 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-IK-NIHILQSDWFSA 171 (276)
T ss_dssp HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-CC-SEEEECCSTTGG
T ss_pred HHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEEcchhhh
Confidence 3445555666554 46779999999999999999965 45589999999 58899999998775 43 799999999875
Q ss_pred cCCCceeEEEEcCCccccCC----------------------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELPEKADILISEPMGTLLVN----------------------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~----------------------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+++||+|+++++...... ......++..+.++|+|||.+++..
T Consensus 172 ~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 172 LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 43578999999977543211 0235778899999999999998753
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=122.57 Aligned_cols=114 Identities=18% Similarity=0.226 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChH-------HHHHHHHHHHhCCCCCCcEEEEEcc-c
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASE-------MAEYARKLIAGNPSLGERITVIKGK-V 122 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~-------~~~~a~~~~~~n~~l~~~i~vi~~d-~ 122 (414)
..+.+.+...++.+|||||||+|.++..+++. |. .+|+|+|+|+ +++.|++++..++ +.++++++.+| .
T Consensus 33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEECSCCT
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEECChh
Confidence 44555556678899999999999999999987 43 5899999994 8999999998875 66789999998 3
Q ss_pred --ccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 --EEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 --~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++.+ ++||+|++..+.+++.+. ..+++.+.++++|||.+++..
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~---~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASA---NALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCH---HHHHHHHHHHTTTCSEEEEEE
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCH---HHHHHHHHHHhCCCCEEEEEE
Confidence 333333 689999998888887664 446677777888899998754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=131.35 Aligned_cols=107 Identities=25% Similarity=0.333 Sum_probs=87.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhC-----C-CCCCcEEEEEcccccc------
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGN-----P-SLGERITVIKGKVEEV------ 125 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n-----~-~l~~~i~vi~~d~~~~------ 125 (414)
..++.+|||||||+|.++..+++. ...+|+|+|+| .+++.|++++..+ + ....+++++.+|++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 346789999999999999999886 23489999999 5999999887643 1 1225799999999986
Q ss_pred cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++ ++||+|+++.+.+++.+ +..++.++.++|||||.+++..
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 444 68999999988887765 6789999999999999998764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=129.68 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=88.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-------HhCCCC-CCcEEEEEcc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLI-------AGNPSL-GERITVIKGK 121 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~-------~~n~~l-~~~i~vi~~d 121 (414)
...+++.+...++.+|||||||+|.+++.+|.. |+.+|+|||++ .+++.|++++ ..++ + ..+|+++++|
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECc
Confidence 345556666778999999999999999998864 77679999999 4888887754 2333 3 3689999999
Q ss_pred cccccCC---CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 122 VEEVELP---EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 122 ~~~~~~~---~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+++.+ ..||+|+++.+. ..+ .+...+.++.+.|||||+|+....
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~---F~p-dl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA---FGP-EVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT---CCH-HHHHHHHHHHTTSCTTCEEEESSC
T ss_pred ccCCccccccCCccEEEEcccc---cCc-hHHHHHHHHHHcCCCCcEEEEeec
Confidence 9987654 379999997653 223 356667888999999999986543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=117.79 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++ +|||||||+|.++..+++.|. +|+|+|+| .+++.|+++...++ . ++.++.+|+.+++.+ ++||+|++.. .
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~fD~v~~~~-~ 103 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG-V--KITTVQSNLADFDIVADAWEGIVSIF-C 103 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHT-C--CEEEECCBTTTBSCCTTTCSEEEEEC-C
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcChhhcCCCcCCccEEEEEh-h
Confidence 45 999999999999999999876 79999999 58999999887754 2 799999999988755 6899999853 2
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++ .......++..+.++|||||.+++..
T Consensus 104 -~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 104 -HL-PSSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp -CC-CHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred -cC-CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22 44567889999999999999998653
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=120.55 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=83.0
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc----ccCCCc
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE----VELPEK 130 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~----~~~~~~ 130 (414)
+.+...++.+|||+|||+|.++..+++. |..+|+|+|+| .+++.|++++..+ .++.++.+|+.+ ..++++
T Consensus 68 ~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTSCC
T ss_pred cccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccCcc
Confidence 3344456789999999999999999987 65689999999 5889998886543 579999999987 555578
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|+++. ........++..+.++|||||.+++.
T Consensus 144 ~D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999542 33334577789999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=125.37 Aligned_cols=119 Identities=22% Similarity=0.214 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+.+.+.+...+...++.+|||+|||+|.+++.+++.+..+|+|+|+| .+++.|++++..++ +.++++++++|+.+. .
T Consensus 109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~-l~~~v~~~~~D~~~~-~ 186 (284)
T 1nv8_A 109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEP-F 186 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGG-G
T ss_pred HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcchhh-c
Confidence 44445555444323567999999999999999998744589999999 59999999999886 777899999999874 3
Q ss_pred CCce---eEEEEcCCccccC--------Chhh--------HHHHHHHHH-hccCCCeEEEcc
Q 015038 128 PEKA---DILISEPMGTLLV--------NERM--------LETYVIARD-RFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~f---DvIis~~~~~~l~--------~e~~--------l~~~l~~~~-r~LkpgG~lip~ 169 (414)
+++| |+|+++++..... .+.. ...+++.+. +.|+|||.+++.
T Consensus 187 ~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 187 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 3578 9999997743211 1110 115778888 999999999864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=120.77 Aligned_cols=106 Identities=27% Similarity=0.317 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
.+.+..... ++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++.. .+ ++.+|+.+++.+ +
T Consensus 45 ~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~------~~--~~~~d~~~~~~~~~ 113 (260)
T 2avn_A 45 GSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KN--VVEAKAEDLPFPSG 113 (260)
T ss_dssp HHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SC--EEECCTTSCCSCTT
T ss_pred HHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC------CC--EEECcHHHCCCCCC
Confidence 344444443 778999999999999999998876 79999999 58898887642 12 788999888764 6
Q ss_pred ceeEEEEcCCcccc-CChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLL-VNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||+|++.....++ .+ +..+++++.++|||||.+++...
T Consensus 114 ~fD~v~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 114 AFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEEEcchhhhcccc---HHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999996543333 33 78889999999999999987543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=124.58 Aligned_cols=118 Identities=19% Similarity=0.102 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRAD-FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
..+...+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|+| .+++.|++++..++ . +++++.+|+.+.
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~ 91 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFG-A--VVDWAAADGIEW 91 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhC-C--ceEEEEcchHhh
Confidence 3344555555544 5778999999999999999999853 389999999 58999999988765 3 789999999874
Q ss_pred cCC-----CceeEEEEcCCccccCCh-----------------------hhHHHHHHHHHhccCCCeE-EEcc
Q 015038 126 ELP-----EKADILISEPMGTLLVNE-----------------------RMLETYVIARDRFLVPMGK-MFPS 169 (414)
Q Consensus 126 ~~~-----~~fDvIis~~~~~~l~~e-----------------------~~l~~~l~~~~r~LkpgG~-lip~ 169 (414)
... ++||+|+++++.+..... .....++..+.++|||||. +++.
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 164 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE 164 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 332 789999998775432110 0126778888999999999 5543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=112.83 Aligned_cols=107 Identities=23% Similarity=0.264 Sum_probs=86.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
...+...+...++.+|||+|||+|.++..+++ +..+|+|+|+| .+++.|++++..++ + .+++++.+|+.+....++
T Consensus 24 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~ 100 (183)
T 2yxd_A 24 RAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KNCQIIKGRAEDVLDKLE 100 (183)
T ss_dssp HHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTT-C-CSEEEEESCHHHHGGGCC
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CcEEEEECCccccccCCC
Confidence 34455555566788999999999999999998 55689999999 59999999998876 4 579999999987322368
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++..+ ..+..++..+.++ |||.+++..
T Consensus 101 ~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 101 FNKAFIGGT-------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp CSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred CcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 999999766 2267788888887 999997654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=118.12 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=84.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++..++ + .+++++.+|+.++. + +++||+|+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 57899999999999999999874 4589999999 59999999988775 5 67999999999865 3 3689999998
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++....... .....++..+.++|+|||.+++..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 654322100 013578889999999999997643
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=119.83 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=82.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---c--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---E-- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~-- 126 (414)
..+...+...++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ .++.++.+++.++ .
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~ 112 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAEAKVP 112 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHTTCSC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcccccc
Confidence 3444444445678999999999999999999876 79999999 588888876 2367888888776 2
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+||+|++....+ .. .+..+++.+.++|||||.+++..
T Consensus 113 ~~~~fD~v~~~~~l~-~~---~~~~~l~~~~~~L~pgG~l~~~~ 152 (227)
T 3e8s_A 113 VGKDYDLICANFALL-HQ---DIIELLSAMRTLLVPGGALVIQT 152 (227)
T ss_dssp CCCCEEEEEEESCCC-SS---CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCccEEEECchhh-hh---hHHHHHHHHHHHhCCCeEEEEEe
Confidence 234699999977666 32 25788899999999999998754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-13 Score=124.96 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=85.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhC---CCCCCc------------
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGN---PSLGER------------ 114 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n---~~l~~~------------ 114 (414)
.+.......++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..+ + +..+
T Consensus 42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG-LTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHC
T ss_pred HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc-ccccchhhhhhhhhcc
Confidence 3334443345679999999999999999886 23489999999 5889999888765 3 2222
Q ss_pred -------------EE-------------EEEccccccc------CCCceeEEEEcCCccccCC------hhhHHHHHHHH
Q 015038 115 -------------IT-------------VIKGKVEEVE------LPEKADILISEPMGTLLVN------ERMLETYVIAR 156 (414)
Q Consensus 115 -------------i~-------------vi~~d~~~~~------~~~~fDvIis~~~~~~l~~------e~~l~~~l~~~ 156 (414)
++ ++++|+.+.. ...+||+|+|+++...... ......++..+
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998754 2348999999987554332 24567889999
Q ss_pred HhccCCCeEEEc
Q 015038 157 DRFLVPMGKMFP 168 (414)
Q Consensus 157 ~r~LkpgG~lip 168 (414)
.++|+|||.+++
T Consensus 201 ~~~LkpgG~l~~ 212 (250)
T 1o9g_A 201 ASALPAHAVIAV 212 (250)
T ss_dssp HHHSCTTCEEEE
T ss_pred HHhcCCCcEEEE
Confidence 999999999986
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=118.86 Aligned_cols=110 Identities=13% Similarity=0.114 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
+.+...+...+ .+..+|||+|||+|.+++.++.. ++ +|+|+|+| .|++.+++++..++ ...++++ .|..+.
T Consensus 37 d~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g-~~~~v~~--~d~~~~ 110 (200)
T 3fzg_A 37 NDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF--LNKESD 110 (200)
T ss_dssp HHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSC-CSSEEEE--ECCHHH
T ss_pred HHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcC-CCccEEE--eccccc
Confidence 44556666655 35789999999999999999876 45 89999999 59999999999886 6666777 566555
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..+++||+|++.-+.|++ .+ .+..+..+.+.|+|||++|
T Consensus 111 ~~~~~~DvVLa~k~LHlL-~~--~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 111 VYKGTYDVVFLLKMLPVL-KQ--QDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp HTTSEEEEEEEETCHHHH-HH--TTCCHHHHHHTCEEEEEEE
T ss_pred CCCCCcChhhHhhHHHhh-hh--hHHHHHHHHHHhCCCCEEE
Confidence 666899999998888887 32 2334447789999999885
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=120.78 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC-ceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE-KADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~-~fDvIis~~ 138 (414)
.++.+|||||||+|.+++.+++.| +.+|+|+|+++ +++.|+++++.++ +.++|+++.+|..+...++ +||+|+...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccccccccCEEEEeC
Confidence 367899999999999999999987 55899999995 8899999999997 8889999999998875554 799988643
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++. ..+..++....+.|+++|.++.+.
T Consensus 99 mGg-----~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 99 MGG-----RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 332 336778888889999999987654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=120.26 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||||||+|.+++.+++.+ +.+|+|+|+++ +++.|+++++.++ +.++|+++.+|..+.-.+ ++||+|+...
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 367799999999999999999986 56899999995 8899999999997 888999999999653322 3799888643
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++ ...+..++......|+++|.++.+..
T Consensus 93 ~G-----g~~i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 93 MG-----GRLIARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp EC-----HHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred CC-----hHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 32 23367888889999999999886543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=119.21 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC------CCcee
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL------PEKAD 132 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------~~~fD 132 (414)
.++++|||||||+|..+..+++.- ..+|+++|++ .+++.|++++...+ +.++++++.+|+.+... .++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 467899999999999999999872 3489999999 59999999998886 77889999999976421 15799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|+++.. ......++..+.++|+|||++++...
T Consensus 136 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 136 FIFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 9998654 22356788899999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.7e-13 Score=122.84 Aligned_cols=101 Identities=16% Similarity=0.001 Sum_probs=83.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC------CceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP------EKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~------~~fDvI 134 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. ..+++++.+|+.++... ..||+|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT-----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC-----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc-----ccCceEEECcccccccccccccccCccEE
Confidence 5678999999999999999999887 79999999 58899988752 23699999999886543 248999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++..+.+++.. .....++..+.++|||||.+++.
T Consensus 129 ~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 129 YMRTGFHHIPV-EKRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp EEESSSTTSCG-GGHHHHHHHHHHHHTTTCEEEEE
T ss_pred EEcchhhcCCH-HHHHHHHHHHHHHcCCCCEEEEE
Confidence 99888877753 34788999999999999997654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=119.97 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-----Cce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-----EKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-----~~f 131 (414)
.++++|||||||+|..+..+++. + ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+.. .. ++|
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG-LSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 36789999999999999999986 2 4689999999 59999999999886 7778999999997652 11 689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++.. ......++..+.++|||||.+++..
T Consensus 142 D~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 142 DLIYIDAD------KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99997653 2336778889999999999998654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=120.90 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C--CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L--PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~--~~~fDvI 134 (414)
.++++|||||||+|..+..+++. + ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+. + . .++||+|
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 46789999999999999999987 2 4589999999 59999999999886 778999999999774 2 2 2489999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+++.. ......++..+.++|||||++++...
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 141 FIDAD------KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp EECSC------GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EECCc------hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 98642 23356788899999999999987543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=119.82 Aligned_cols=106 Identities=11% Similarity=0.021 Sum_probs=81.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c---CCCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E---LPEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~---~~~~fDvIis 136 (414)
++.+|||||||+|.++..+|+.. ..+|+|||+| ++++.|++++..++ + .++.++.+|+.++ + .+++||.|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~-l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG-L-SNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT-C-SSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 56799999999999999999874 3589999999 59999999998875 4 3599999999885 2 3478999998
Q ss_pred cCCccccCChhh-----HHHHHHHHHhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERM-----LETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~-----l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+..+...... ...++..+.++|||||.+++..
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 744332211110 1258889999999999997653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=120.35 Aligned_cols=108 Identities=26% Similarity=0.285 Sum_probs=88.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.......++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.++ +.++++++.+|+.+....+
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhhccCCC
Confidence 34556666678899999999999999999988 4 5689999999 59999999998876 7777999999999764456
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|++++.. ...++..+.++|+|||.+++.
T Consensus 162 ~~D~v~~~~~~--------~~~~l~~~~~~L~~gG~l~~~ 193 (255)
T 3mb5_A 162 NVDHVILDLPQ--------PERVVEHAAKALKPGGFFVAY 193 (255)
T ss_dssp SEEEEEECSSC--------GGGGHHHHHHHEEEEEEEEEE
T ss_pred CcCEEEECCCC--------HHHHHHHHHHHcCCCCEEEEE
Confidence 89999986432 245667788999999999764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=122.44 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC---------------------------
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL--------------------------- 111 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l--------------------------- 111 (414)
...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..++..
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 446778999999999999999988877689999999 5899998887654200
Q ss_pred CCcE-EEEEcccccccC--C---CceeEEEEcCCccccC-ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 112 GERI-TVIKGKVEEVEL--P---EKADILISEPMGTLLV-NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 112 ~~~i-~vi~~d~~~~~~--~---~~fDvIis~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..++ .++.+|+.+... + ++||+|++....+++. ....+..++..+.++|||||.+++..
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 0137 999999988643 3 6899999977665333 33457888999999999999998754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=121.70 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-CceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-EKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ ++++.+|+.+. +++ ++||+|++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i~~~ 108 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGVMIS 108 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence 4568999999999999999999877 59999999 588777653 67889998875 433 789999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+.+++.. ..+..++..+.++|||||.+++..
T Consensus 109 ~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 140 (240)
T 3dli_A 109 HFVEHLDP-ERLFELLSLCYSKMKYSSYIVIES 140 (240)
T ss_dssp SCGGGSCG-GGHHHHHHHHHHHBCTTCCEEEEE
T ss_pred CchhhCCc-HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 88877753 346889999999999999998653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=129.31 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=92.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC-CCcEEEEEcccccccC-----CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL-GERITVIKGKVEEVEL-----PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l-~~~i~vi~~d~~~~~~-----~~~fDvI 134 (414)
.++++|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|++++..|+ + .++++++.+|+.++.. .++||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 4778999999999999999999988899999999 58899999999987 6 5589999999987632 3589999
Q ss_pred EEcCCcccc------CChhhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 135 ISEPMGTLL------VNERMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 135 is~~~~~~l------~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
+++++.... ........++..+.+.|+|||+++++.++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 344 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM 344 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 999875321 11234677888889999999999887665433
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=120.88 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC-ceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE-KADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~-~fDvIis~~ 138 (414)
.++.+|||||||+|.+++.+++.+ +.+|+|+|+++ +++.|+++++.++ +.++|+++.+|..+...++ +||+|++..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchhhccCccccccEEEEeC
Confidence 367899999999999999999987 45899999995 8899999999997 8889999999998865554 599988643
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++. ..+..++....+.|+++|.++.+.
T Consensus 99 mGg-----~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 99 MGG-----TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp ECH-----HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred Cch-----HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 332 336778888899999999988654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=125.87 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
..+..++.......++.+|||+|||+|.+++.++..+ ..+|+|+|+| .+++.|++++..++ +. +++++++|+.++
T Consensus 189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-~i~~~~~D~~~~ 266 (354)
T 3tma_A 189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-WIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-TCEEEECCGGGG
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEeCChhhC
Confidence 3455666666666778899999999999999999864 3579999999 59999999999887 66 899999999998
Q ss_pred cCC-CceeEEEEcCCccccCC-----hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELP-EKADILISEPMGTLLVN-----ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~-~~fDvIis~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+ +.||+|+++++...... ......++..+.++|||||.+++..
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 654 56899999988543222 1223678889999999999997653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-12 Score=114.37 Aligned_cols=98 Identities=28% Similarity=0.312 Sum_probs=79.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++..++ + +++++.+|+.++ +++||+|+++++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~--~~~~D~v~~~~p 121 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSEF--NSRVDIVIMNPP 121 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGGC--CCCCSEEEECCC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHHc--CCCCCEEEEcCC
Confidence 45788999999999999999999987789999999 58999999988775 4 799999999986 358999999998
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
.+.... .....+++.+.+.| ||.+
T Consensus 122 ~~~~~~-~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 122 FGSQRK-HADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp CSSSST-TTTHHHHHHHHHHC--SEEE
T ss_pred CccccC-CchHHHHHHHHHhc--CcEE
Confidence 665432 22356677777877 5544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-12 Score=116.85 Aligned_cols=108 Identities=22% Similarity=0.248 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-EL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~ 127 (414)
.....+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|+++...++ +++++.+|+.+. ..
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~ 131 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEE 131 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCccccccc
Confidence 344556666666778899999999999999999987 589999999 58999999887642 799999999873 33
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++||+|++....+++. ..+.+.|||||.+++...
T Consensus 132 ~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLL---------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp GCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEEC
T ss_pred CCCccEEEECCcHHHHH---------HHHHHHcCCCcEEEEEEc
Confidence 46899999987665543 246789999999987643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=124.02 Aligned_cols=107 Identities=29% Similarity=0.303 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
+.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++ . +++++.+|+++++.+
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------~--~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVH------P--QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCC------T--TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc------c--CCEEEECchhhCCCCC
Confidence 445566666666889999999999999999998765 799999995 77665442 1 699999999998765
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++..+.+++.+ +..+++++.++|| ||.+++..
T Consensus 93 ~~fD~v~~~~~l~~~~~---~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 93 KSVDGVISILAIHHFSH---LEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp TCBSEEEEESCGGGCSS---HHHHHHHHHHHBC-SSCEEEEE
T ss_pred CCEeEEEEcchHhhccC---HHHHHHHHHHHhC-CcEEEEEE
Confidence 78999999887777754 7888999999999 99665543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=113.10 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEc-C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISE-P 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~-~ 138 (414)
.++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++. .+++++.+|+.+++.+ ++||+|++. .
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D~i~~~~~ 116 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFDLIVSAGN 116 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEEEEEECCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCceeEEEECCc
Confidence 4778999999999999999999875 79999999 4888888763 2488999999987654 689999997 4
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+++ .......++..+.++|+|||.+++..
T Consensus 117 ~~~~~-~~~~~~~~l~~~~~~l~~~G~l~~~~ 147 (195)
T 3cgg_A 117 VMGFL-AEDGREPALANIHRALGADGRAVIGF 147 (195)
T ss_dssp CGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhc-ChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 44444 44456888999999999999998753
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=115.08 Aligned_cols=95 Identities=13% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~~ 138 (414)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++ . .+++++.+| .+. .++||+|++..
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~----~~v~~~~~d---~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK---F----DSVITLSDP---KEIPDNSVDFILFAN 83 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH---C----TTSEEESSG---GGSCTTCEEEEEEES
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh---C----CCcEEEeCC---CCCCCCceEEEEEcc
Confidence 45678999999999999999999876 89999999 588888887 1 368999999 333 36899999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+++.+ ...+++.+.+.|||||.+++.
T Consensus 84 ~l~~~~~---~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 84 SFHDMDD---KQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp CSTTCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred chhcccC---HHHHHHHHHHhcCCCCEEEEE
Confidence 7777754 678899999999999999865
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-12 Score=122.51 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=93.1
Q ss_pred HHHHhcCC--CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 54 AVIENRAD--FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 54 ai~~~~~~--~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
.+.+.... .++.+|||||||+|.++..+++. +..+++++|++.+++.|++++...+ +.++++++.+|+.+.+.++.
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~ 232 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQG-VASRYHTIAGSAFEVDYGND 232 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHT-CGGGEEEEESCTTTSCCCSC
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcC-CCcceEEEecccccCCCCCC
Confidence 34444444 56789999999999999999987 3348999999988899999888765 66789999999988766667
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++..+.+++.+ .....+++.+.+.|+|||.+++..
T Consensus 233 ~D~v~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 233 YDLVLLPNFLHHFDV-ATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp EEEEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEcchhccCCH-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 999999777766543 336788899999999999887654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-12 Score=123.26 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| ++++.|++++..++ +. +++++.+|+.+...
T Consensus 63 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~~-~v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-IE-NVIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCGGGCCG
T ss_pred HHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CeEEEECChhhccc
Confidence 445566666667889999999999999999998743 469999999 59999999998876 54 49999999988533
Q ss_pred -CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 -PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.++||+|++..+.+++. ..+.+.|||||++++...
T Consensus 141 ~~~~fD~Iv~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred cCCCeEEEEEcCCHHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 36899999987766543 345689999999987643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-11 Score=121.31 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.....++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++...+ +.++|+++.+|+.+ +.+..|
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-l~~~v~~~~~d~~~-~~p~~~ 269 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRG-LADRCEILPGDFFE-TIPDGA 269 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT-CTTTEEEEECCTTT-CCCSSC
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcC-cCCceEEeccCCCC-CCCCCc
Confidence 344555555567899999999999999999873 348999999558999999988876 77899999999983 445589
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.+.+.++ ....+++++.+.|+|||.+++..
T Consensus 270 D~v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 270 DVYLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp SEEEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred eEEEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 999998887776543 34578899999999999998754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-12 Score=121.06 Aligned_cols=116 Identities=15% Similarity=0.197 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeC-h-HHHHHHHHHHH-----hCCCCC----CcEEE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEA-S-EMAEYARKLIA-----GNPSLG----ERITV 117 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~-s-~~~~~a~~~~~-----~n~~l~----~~i~v 117 (414)
....+.+.......++++|||||||+|.+++.+++.|+.+|+|+|+ | .+++.|++++. .++ +. +++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~-~~~~~~~~v~~ 143 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCS-SETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc-cccCCCCCeEE
Confidence 3344555555545678899999999999999999998878999999 7 58899999984 333 33 46888
Q ss_pred EEccccc----cc---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccC---C--CeEEEc
Q 015038 118 IKGKVEE----VE---LPEKADILISEPMGTLLVNERMLETYVIARDRFLV---P--MGKMFP 168 (414)
Q Consensus 118 i~~d~~~----~~---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lk---p--gG~lip 168 (414)
+..+..+ +. ..++||+|++.-+.++ ......++..+.++|+ | ||.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 8666443 21 2468999998433333 3447888999999999 9 998765
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.7e-12 Score=115.65 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCceeE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKADI 133 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~fDv 133 (414)
..++.+|||+|||+|.++..+++. | ..+|+|+|+| .+++.++++++.+ .+++++.+|+.+.. .+++||+
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCCceE
Confidence 457889999999999999999976 4 3689999999 4888888887653 57999999998742 3468999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+++.+ .......++..+.++|||||.+++.
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 998765 2223455588899999999998765
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=126.86 Aligned_cols=115 Identities=21% Similarity=0.195 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.+.+.+.+...++.+|||+|||+|.++..+++.+. .+|+++|+|+ +++.|++++..++ +. ++++.+|+.+.. ++
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~--~~~~~~d~~~~~-~~ 260 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG-VE--GEVFASNVFSEV-KG 260 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT-CC--CEEEECSTTTTC-CS
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC--CEEEEccccccc-cC
Confidence 34555655445677999999999999999999864 3899999994 8899999998875 43 677889987754 57
Q ss_pred ceeEEEEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|+++++.+... .......++..+.++|||||.+++..
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 899999998876432 23446889999999999999998653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=121.81 Aligned_cols=114 Identities=13% Similarity=0.041 Sum_probs=89.8
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCc
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEK 130 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~ 130 (414)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.++ +. +++++.+|+.++.. .++
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~~-~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMG-VL-NTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCHHHHHHHHHHTTCC
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhC-CC-cEEEEeCChHhcchhhhhcccc
Confidence 34567889999999999999999884 44689999999 58999999998876 54 79999999988754 568
Q ss_pred eeEEEEcCCccccC--C-------------hhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 131 ADILISEPMGTLLV--N-------------ERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 131 fDvIis~~~~~~l~--~-------------e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
||+|+++++.+... . ......++..+.++|||||.++.+.++++
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 99999987644311 0 02246788999999999999998877643
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.4e-12 Score=123.38 Aligned_cols=115 Identities=27% Similarity=0.210 Sum_probs=91.8
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
.+.+.....++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++..++ +.++++++.+|+.+ ..+..||
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~~~~D 250 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAG-LADRVTVAEGDFFK-PLPVTAD 250 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCSCCEE
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcC-CCCceEEEeCCCCC-cCCCCCC
Confidence 34444444567899999999999999999874 348999999558999999998876 77789999999976 3455699
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|++..+.+++.++ ....+++.+.+.|||||.+++...
T Consensus 251 ~v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 251 VVLLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEEeccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEec
Confidence 99998877766543 245788999999999999876544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=128.51 Aligned_cols=111 Identities=25% Similarity=0.238 Sum_probs=91.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~fDvIis 136 (414)
++++|||+|||+|.+++.+++.|+++|+|+|+| .+++.|++++..|+ +.++++++.+|+.++.. .++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 678999999999999999999888899999999 58999999999987 66689999999987632 468999999
Q ss_pred cCCccccCCh------hhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 137 EPMGTLLVNE------RMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 137 ~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++....... .....++..+.++|+|||.++...++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9875432111 3356778889999999999987766543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-12 Score=115.59 Aligned_cols=106 Identities=8% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
++.+|||||||+|.++..+++. +..+|+|+|+| ++++.|++++..++ + .++.++.+|+.++. + ++.||.|+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~-~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 5679999999999999999987 34589999999 59999999998875 4 46999999998864 3 3689999876
Q ss_pred CCccccCCh-----hhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNE-----RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
....+.... -....++..+.++|||||.+++..
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 443221110 013678899999999999997653
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=122.87 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-------CCce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------PEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------~~~f 131 (414)
.++++|||||||+|..++.+++. + ..+|+++|++ ++++.|++++..++ +.++|+++.+|+.+... .++|
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 46789999999999999999986 2 4589999999 58899999999887 77899999999977521 4789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+|+++.. ......+++.+.++|||||++++...
T Consensus 138 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 138 DFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred eEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 99998643 23356788899999999999987643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-12 Score=123.86 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=94.5
Q ss_pred HHHHhcCCCC-CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCC
Q 015038 54 AVIENRADFI-GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPE 129 (414)
Q Consensus 54 ai~~~~~~~~-~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~ 129 (414)
.+.+.....+ +.+|||||||+|.++..+++. +..+++++|+.++++.|++++...+ +.++++++.+|+.+.. .++
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~ 247 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHD-LGGRVEFFEKNLLDARNFEGG 247 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT-CGGGEEEEECCTTCGGGGTTC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcC-CCCceEEEeCCcccCcccCCC
Confidence 3444444445 789999999999999999987 3458999999778999999988876 7788999999999876 667
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.||+|++..+.|++.+ .....+++.+.+.|+|||.+++..
T Consensus 248 ~~D~v~~~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDA-REAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp CEEEEEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEEecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8999999888777644 336788999999999999997654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.7e-12 Score=121.51 Aligned_cols=106 Identities=19% Similarity=0.061 Sum_probs=87.9
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT 141 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~ 141 (414)
+..+|||||||+|.++..+++. +..+++++|+..+++.|++++...+ +.++++++.+|+.+ +.+..||+|++..+.|
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~p~~~D~v~~~~vlh 246 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTG-LSGRAQVVVGSFFD-PLPAGAGGYVLSAVLH 246 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCCCSCSEEEEESCGG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcC-cCcCeEEecCCCCC-CCCCCCcEEEEehhhc
Confidence 4579999999999999999886 3458999999558999999988876 77899999999973 4445899999988877
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++.++ ....+++++.+.|+|||.+++...
T Consensus 247 ~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 247 DWDDL-SAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GSCHH-HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCCHH-HHHHHHHHHHHhcCCCCEEEEEee
Confidence 76543 357888999999999999987543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=136.38 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=91.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc--CCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
.++++|||+|||+|.+++.+++.|+.+|++||+| .+++.|+++++.|+ +. ++++++++|+.++- ..++||+|+++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 3688999999999999999999999899999999 58999999999997 66 68999999998852 24689999999
Q ss_pred CCccc--------cCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 138 PMGTL--------LVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 138 ~~~~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++... .........++..+.++|+|||.++++.+.
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 87532 122344677888999999999999976654
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=117.35 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C--CCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L--PEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~--~~~fDvIi 135 (414)
.++.+|||+|||+|.++..+++.. ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+. + . +++||+|+
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 467899999999999999999873 4589999999 58999999998876 667899999999874 2 2 46899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++.... ....++..+.++|+|||.+++..
T Consensus 132 ~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 865422 36778899999999999998764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=120.52 Aligned_cols=101 Identities=27% Similarity=0.258 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
..++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.|+ +. ++.++.+|+.+++..++||+|++++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~-l~-~~~~~~~d~~~~~~~~~~D~Vi~d~ 194 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK-LN-NVIPILADNRDVELKDVADRVIMGY 194 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT-CS-SEEEEESCGGGCCCTTCEEEEEECC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEECChHHcCccCCceEEEECC
Confidence 356789999999999999999987 45689999999 58999999999986 54 5889999999883346899999987
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+. ....++..+.+.|+|||+++++.
T Consensus 195 p~-------~~~~~l~~~~~~LkpgG~l~~s~ 219 (272)
T 3a27_A 195 VH-------KTHKFLDKTFEFLKDRGVIHYHE 219 (272)
T ss_dssp CS-------SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cc-------cHHHHHHHHHHHcCCCCEEEEEE
Confidence 74 13456677788999999998553
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-12 Score=113.40 Aligned_cols=111 Identities=22% Similarity=0.180 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.....+.+.+...++.+|||||||+|.++..+++.+. .+|+++|++ .+++.|++++...+ + .+++++.+|+....
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-Y-DNVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEESCGGGCC
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCC
Confidence 3444556666667888999999999999999998752 589999999 58899999887764 3 35999999986533
Q ss_pred C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 ~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
. .++||+|++....+++. ..+.+.|||||.+++...
T Consensus 142 ~~~~~fD~v~~~~~~~~~~---------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 142 EPLAPYDRIYTTAAGPKIP---------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GGGCCEEEEEESSBBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred CCCCCeeEEEECCchHHHH---------HHHHHHcCCCcEEEEEEC
Confidence 2 36899999976655543 356789999999987643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=123.80 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=89.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
....+|||||||+|.++..+++.. ..+++++|+.++++.|++++...+ +.++++++.+|+.+.. .++.||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLS-GSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCT-TGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcC-cccceEEEEccccccCCCCCCCcCEEEEec
Confidence 356899999999999999998863 448999999669999999988775 6679999999999863 567899999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+.+.++ ....+++++.+.|||||.+++..
T Consensus 257 vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 257 FLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp CSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 77766543 35678899999999999997654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=124.19 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHH-------HHHHHhCCCCC-CcEEEEEc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYA-------RKLIAGNPSLG-ERITVIKG 120 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a-------~~~~~~n~~l~-~~i~vi~~ 120 (414)
....+.+.+...++.+|||||||+|.++..+++. |..+|+|||++ .+++.| ++++...+ +. .+++++.+
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~g 308 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEES
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEc
Confidence 3455666666678899999999999999999986 76789999999 477888 88887765 43 68999997
Q ss_pred ccc-c---cc-CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 121 KVE-E---VE-LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 121 d~~-~---~~-~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|.. . +. ..++||+|+++... .. ..+..++.++.+.|||||.+++.
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l---~~-~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFL---FD-EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTT---CC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred CccccccccccccCCCCEEEEeCcc---cc-ccHHHHHHHHHHhCCCCeEEEEe
Confidence 543 2 11 13689999986433 22 33667788999999999999865
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=114.59 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=80.1
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCce
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~f 131 (414)
+...++.+|||+|||+|.++..+++. | ..+|+|+|+|+ +++.+.++++.+ .+++++.+|+.+.. ..++|
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCcE
Confidence 33456789999999999999999987 3 46899999994 777777777664 46999999998742 24689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+++++ .......++..+.++|||||.+++.
T Consensus 149 D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 149 DVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 99999765 2223456678889999999999874
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=118.89 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C------CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L------PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~------~~~ 130 (414)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|++++...+ +.++++++.+|+.+. + + .++
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 46789999999999999999987 2 3589999999 69999999999876 777899999999765 2 2 468
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|+++.. ......++..+.++|||||+++++.
T Consensus 157 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999998643 1225778888999999999998754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=115.22 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~f 131 (414)
.+.......++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|+++...++ +..+++++.+|+.+.. ..++|
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~ 159 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKDAEVPEGIF 159 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTTSCCCTTCB
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhhcccCCCcc
Confidence 4445555567889999999999999999998 5589999999 58899999998875 6678999999998865 34689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++++. + ...++..+.++|+|||.+++..
T Consensus 160 D~v~~~~~-----~---~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 160 HAAFVDVR-----E---PWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp SEEEECSS-----C---GGGGHHHHHHHBCTTCEEEEEE
T ss_pred cEEEECCc-----C---HHHHHHHHHHHcCCCCEEEEEe
Confidence 99998643 1 3455677789999999997643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=120.65 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=90.5
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
+.+.....++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++++..++ +.++++++.+|+.+ ..+..||+
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~~~~D~ 252 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEG-LSDRVDVVEGDFFE-PLPRKADA 252 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCSSCEEE
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeCCCCC-CCCCCccE
Confidence 4444455567899999999999999999874 348999999558999999998876 77789999999976 34556999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|++..+.+++.++ ....+++++.+.|||||.+++..
T Consensus 253 v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 288 (360)
T 1tw3_A 253 IILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 288 (360)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEE
Confidence 9998777765443 34678899999999999987653
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=113.99 Aligned_cols=110 Identities=21% Similarity=0.202 Sum_probs=85.0
Q ss_pred HHHHHHHh---cCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 51 YYAAVIEN---RADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 51 ~~~ai~~~---~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
+.++|+.- +...+|.+|||+|||+|.++..+|+. | ..+|+|+|++ +|++.+++++.+. .++..+.+|..+
T Consensus 62 laa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~----~ni~~V~~d~~~ 137 (233)
T 4df3_A 62 LAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR----RNIFPILGDARF 137 (233)
T ss_dssp HHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----TTEEEEESCTTC
T ss_pred HHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----cCeeEEEEeccC
Confidence 34555543 45678999999999999999999987 4 3589999999 5999888876553 368999998876
Q ss_pred cc----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VE----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+.+|+|+++...+ .....++.++.+.|||||.+++.
T Consensus 138 p~~~~~~~~~vDvVf~d~~~~-----~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVAQP-----EQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GGGGTTTCCCEEEEEECCCCT-----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccceEEEEEEeccCC-----hhHHHHHHHHHHhccCCCEEEEE
Confidence 53 236899999864322 23567889999999999998764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=114.61 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=82.1
Q ss_pred CCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~~~~fDvIis~ 137 (414)
++++|||||||+|..+..+++. + ..+|+++|+| .+++.|++++...+ +.++++++.+|+.+. + .++ ||+|+++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG-LIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS-GGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 5689999999999999999987 2 4589999999 59999999988775 667899999999775 2 346 9999986
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.. ......+++.+.++|||||++++..
T Consensus 134 ~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 CD------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp TT------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 32 1225778899999999999998754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-12 Score=121.23 Aligned_cols=109 Identities=18% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC-CCC--------CCcEEEEEccccccc-CCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN-PSL--------GERITVIKGKVEEVE-LPEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n-~~l--------~~~i~vi~~d~~~~~-~~~~ 130 (414)
.++++|||||||+|.++..+++.+..+|++||++ .+++.|++++ .. +.+ ..+++++.+|+.++. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 3568999999999999999998877799999999 5889999987 32 012 468999999987642 1578
Q ss_pred eeEEEEcCCccccCChhh-HHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+++++......+.. ...+++.+.++|+|||+++....
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999999876533221111 26778899999999999987744
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=115.14 Aligned_cols=102 Identities=20% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-----Cce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-----EKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-----~~f 131 (414)
.++++|||||||+|..++.+++. + ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+. .++ ++|
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 46789999999999999999986 2 4589999999 69999999999886 778899999998764 121 689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+++.. ......++..+.++|+|||.+++..
T Consensus 147 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 147 DVAVVDAD------KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEECSC------STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99999754 2225677888899999999998754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=118.26 Aligned_cols=109 Identities=23% Similarity=0.202 Sum_probs=87.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.......++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+...++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHcccCC
Confidence 34555556677889999999999999999987 5 4689999999 58899999998875 6678999999998873336
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|+++++. ...++..+.++|+|||.+++..
T Consensus 181 ~~D~V~~~~~~--------~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 181 DVDALFLDVPD--------PWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp SEEEEEECCSC--------GGGTHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEECCcC--------HHHHHHHHHHHcCCCCEEEEEe
Confidence 89999996531 2456677889999999997654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=119.72 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=90.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.....+ .+|||||||+|.++..+++. +..+++++|+..+++.|++++...+ +.++++++.+|+.+ +.+++|
T Consensus 158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~~~~ 234 (334)
T 2ip2_A 158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLL-AGERVSLVGGDMLQ-EVPSNG 234 (334)
T ss_dssp HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHH-HTTSEEEEESCTTT-CCCSSC
T ss_pred HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcC-CCCcEEEecCCCCC-CCCCCC
Confidence 34444443334 89999999999999999887 3448999999448899988876654 56789999999987 556789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+|++..+.+++.+ .....+++.+.+.|+|||.+++...
T Consensus 235 D~v~~~~vl~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 235 DIYLLSRIIGDLDE-AASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp SEEEEESCGGGCCH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CEEEEchhccCCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999877776543 3356888999999999999987643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=115.47 Aligned_cols=102 Identities=22% Similarity=0.253 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-c-C---------
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-E-L--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~--------- 127 (414)
.++++|||||||+|..+..+++.. ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+. + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 467899999999999999999873 4589999999 58899999998876 667799999998763 1 1
Q ss_pred ------C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 ------P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ------~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+ ++||+|+++.. ......++..+.++|+|||++++..
T Consensus 138 ~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 68999998632 2335678889999999999998754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-12 Score=118.26 Aligned_cols=106 Identities=18% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---cCC----CceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---ELP----EKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~~----~~fDv 133 (414)
++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..++ +.++++++++|+.+. .++ ++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 5679999999999999888876 23589999999 59999999999886 777899999997762 233 47999
Q ss_pred EEEcCCccccCCh------------hhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNE------------RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e------------~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+++++.+....+ .....++..+.++|||||.+.+.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9999886543200 01124567788999999987543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=116.38 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=88.9
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCc---cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 51 YYAAVIENRA-DFIGRVVVDVGAGS---GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 51 ~~~ai~~~~~-~~~~~~VLDiGcGt---G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
+...+.+.+. .....+|||||||+ |.++..+++. ...+|+++|+| .|++.|++++.. ..+++++.+|+.+
T Consensus 64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~----~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK----DPNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT----CTTEEEEECCTTC
T ss_pred HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC----CCCeEEEEeeCCC
Confidence 3333334333 23447999999999 9887777665 23589999999 599999998753 2479999999976
Q ss_pred cc-----------CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 125 VE-----------LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 125 ~~-----------~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.. ++ ++||+|++..+.|++.++ ....+++++.+.|+|||.+++...
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 32 22 479999999888888776 578899999999999999987653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-11 Score=118.38 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=92.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.....++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++..++ +.++++++.+|+.+.+.++ .
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~-~ 257 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG-VADRMRGIAVDIYKESYPE-A 257 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT-CTTTEEEEECCTTTSCCCC-C
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcC-CCCCEEEEeCccccCCCCC-C
Confidence 345555555667899999999999999999873 348999999448999999998876 7778999999998875554 4
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.+.+.+ .....+++++.+.|||||.+++..
T Consensus 258 D~v~~~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 258 DAVLFCRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp SEEEEESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CEEEEechhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99999877776644 346788999999999999997644
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-12 Score=122.68 Aligned_cols=99 Identities=25% Similarity=0.263 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+| .+++.|++++..|+ +.++++++++|+.++. ++||+|+++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVREVD--VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCC--CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHHhc--CCCcEEEECCcH
Confidence 4688999999999999999 87 67799999999 58899999999987 7778999999999876 789999998764
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.. ..++..+.++|+|||.++...+.
T Consensus 269 ~~-------~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 269 FA-------HKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp TG-------GGGHHHHHHHEEEEEEEEEEEEE
T ss_pred hH-------HHHHHHHHHHcCCCCEEEEEEee
Confidence 43 25667778899999998776544
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=115.12 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C------CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L------PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~------~~~ 130 (414)
.++++|||||||+|..++.++++ + ..+|+++|++ ++++.|++++...+ +.++++++.+|+.+.. + .++
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 46789999999999999999987 2 4589999999 59999999999876 7778999999997651 2 468
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|+++.. ......+++.+.++|+|||+++.+..
T Consensus 148 fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 148 YDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred cCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999998632 23357788889999999999987643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=119.52 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCC----------------CC------------
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPS----------------LG------------ 112 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~----------------l~------------ 112 (414)
.++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|++++..... ..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4678999999999997665555444589999999 599988886543210 00
Q ss_pred CcEEEEEccccc-ccC------CCceeEEEEcCCccccCC-hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 113 ERITVIKGKVEE-VEL------PEKADILISEPMGTLLVN-ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 113 ~~i~vi~~d~~~-~~~------~~~fDvIis~~~~~~l~~-e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.++.+|+.+ .++ +++||+|++....+++.. ...+..++.++.++|||||.+++.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 025678889887 332 246999999887766433 235788999999999999999875
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-12 Score=124.50 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=89.1
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~fDvIis 136 (414)
++++|||+|||+|.+++.+++. +.+|+|+|+| .+++.|++++..|+ +.+ ++++.+|+.++.. .++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~-~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNG-LGN-VRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTT-CTT-EEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC-CCC-ceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 6789999999999999999988 6689999999 58999999999987 654 9999999987632 468999999
Q ss_pred cCCccccCCh------hhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 137 EPMGTLLVNE------RMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 137 ~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+++....... .....++..+.++|+|||.++++.++..
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9875433211 3356788889999999999988766533
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-11 Score=110.81 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=75.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCceeE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKADI 133 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~fDv 133 (414)
..++.+|||+|||+|.++..+++. | ..+|+|+|+++ |++...+..+.. .++.++.+|+.... ..++||+
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~~D~ 149 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVENVDV 149 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCCEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccceEE
Confidence 567899999999999999999876 3 45899999995 765444444432 36999999998643 2368999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+++... ......+...+.++|||||.+++.
T Consensus 150 I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 150 LYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 9997542 222444556667799999999876
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=110.61 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=70.4
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|++++. +++++.+|+.+++ ++||+|+++++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~--~~~D~v~~~~p 119 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS--GKYDTWIMNPP 119 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC--CCeeEEEECCC
Confidence 45778999999999999999999887789999999 58899888743 5899999999864 78999999998
Q ss_pred ccccCChhhHHHHHHHHHhcc
Q 015038 140 GTLLVNERMLETYVIARDRFL 160 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~L 160 (414)
.++.... ....++..+.+.+
T Consensus 120 ~~~~~~~-~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 120 FGSVVKH-SDRAFIDKAFETS 139 (200)
T ss_dssp C--------CHHHHHHHHHHE
T ss_pred chhccCc-hhHHHHHHHHHhc
Confidence 7766432 2345677777777
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=113.32 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~~ 128 (414)
....+.+.+...++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++..++ +. +++++.+|+.. ++..
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG-VK-NVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CcEEEECCcccCCCCC
Confidence 344555555667788999999999999999998742579999999 58899999998875 43 49999999732 2222
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+||+|++....+.+. ..+.+.|+|||.+++...
T Consensus 157 ~~fD~Ii~~~~~~~~~---------~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIP---------EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCC---------HHHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCcHHHHH---------HHHHHhcCCCcEEEEEEe
Confidence 4599999876554432 245789999999987654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=119.15 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=88.5
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeE
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADI 133 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDv 133 (414)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+| .+++.+++++..++ +. +++++++|+.++.. +++||+
T Consensus 113 ~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 113 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-VL-NVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-CC-SEEEESSCGGGGGGGCCCEEE
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-CC-eEEEEECChhhcccccccCCE
Confidence 345567889999999999999999986 23589999999 58999999998875 43 69999999988753 468999
Q ss_pred EEEcCCcccc--C--Ch--------h-------hHHHHHHHHHhccCCCeEEEccccee
Q 015038 134 LISEPMGTLL--V--NE--------R-------MLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 134 Iis~~~~~~l--~--~e--------~-------~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
|+++++.+.. . .. . ....++..+.++|||||.++.+.+++
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9998663211 1 11 0 11578889999999999999877664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=124.33 Aligned_cols=113 Identities=21% Similarity=0.167 Sum_probs=77.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEE--EcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVI--KGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi--~~d~~~~~~~~~ 130 (414)
..+.+.....++.+|||||||+|.++..+++. .+|+|||+++|+..+++..........+++++ ++|+++++ +++
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~ 148 (276)
T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQ 148 (276)
T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCC
T ss_pred HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCC
Confidence 44444433456789999999999999999988 47999999986433322110000022278999 99999876 578
Q ss_pred eeEEEEcCCccccCChh-h-H--HHHHHHHHhccCCCe--EEEcc
Q 015038 131 ADILISEPMGTLLVNER-M-L--ETYVIARDRFLVPMG--KMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~-~-l--~~~l~~~~r~LkpgG--~lip~ 169 (414)
||+|+|+.. +...... . . ..++..+.++||||| .+++.
T Consensus 149 fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 149 ADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 999999876 3322211 0 1 126788899999999 88764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=117.61 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh--CCCC-CCcEEEEEcccccc-c-CCCceeEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG--NPSL-GERITVIKGKVEEV-E-LPEKADILI 135 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~--n~~l-~~~i~vi~~d~~~~-~-~~~~fDvIi 135 (414)
++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. ++ + .++++++.+|+.++ . .+++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 5789999999999999999988 67799999999 488999988753 12 3 46899999998874 2 247899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++++........ ....+++.+.+.|+|||+++....+
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 987654322111 1256788889999999999887543
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=110.28 Aligned_cols=101 Identities=22% Similarity=0.273 Sum_probs=79.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHhCCCC----CCcEEEEEcccccccC-CCcee
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAGNPSL----GERITVIKGKVEEVEL-PEKAD 132 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~n~~l----~~~i~vi~~d~~~~~~-~~~fD 132 (414)
..++.+|||+|||+|.++..+++. |. .+|+++|++ .+++.|++++..++ . .++++++.+|+..... .++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECCcccCcccCCCcC
Confidence 457789999999999999999986 43 489999999 58899999887653 2 3579999999986543 36899
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|++......+ +..+.+.|||||.+++..+
T Consensus 154 ~i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 154 AIHVGAAAPVV---------PQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EEEECSBBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred EEEECCchHHH---------HHHHHHhcCCCcEEEEEEe
Confidence 99987654332 2456789999999987644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=117.19 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=82.7
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhC-CCCCCcEEEEEcccccccCCC
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGN-PSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n-~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.+...+...++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+ + .++++++.+|+.+...++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD--IGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC--CTTEEEECSCTTTCCCSC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC--CCcEEEEECchhccCcCC
Confidence 4445555667889999999999999999987 34589999999 5899999999876 5 257999999998843346
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+||+|++++. + ...++..+.++|||||.+++..
T Consensus 179 ~fD~Vi~~~~-----~---~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 179 MYDAVIADIP-----D---PWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp CEEEEEECCS-----C---GGGSHHHHHHTEEEEEEEEEEE
T ss_pred CccEEEEcCc-----C---HHHHHHHHHHHcCCCCEEEEEe
Confidence 8999998532 2 3466788889999999998654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-12 Score=116.72 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccc-cccC--CCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE-EVEL--PEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~-~~~~--~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++ . .+++++.+|+. .++. +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~----~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN---A----PHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH---C----TTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---C----CCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 4678999999999999999999876 79999999 588998887 1 35899999994 4443 3689999986
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
. .+..++..+.++|||||.++
T Consensus 119 ~---------~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 119 R---------GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp S---------CCSGGGGGHHHHEEEEEEEE
T ss_pred C---------CHHHHHHHHHHHcCCCcEEE
Confidence 1 13456677889999999998
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=130.24 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=88.1
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHhCCC----CCCcEEEEEcccccccC
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGA--KHVYAVEAS-EMAEYARKLIAGNPS----LGERITVIKGKVEEVEL 127 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s-~~~~~a~~~~~~n~~----l~~~i~vi~~d~~~~~~ 127 (414)
+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| .|++.|++++..... -..+++++++|+.+++.
T Consensus 713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~ 792 (950)
T 3htx_A 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS 792 (950)
T ss_dssp HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT
T ss_pred HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc
Confidence 34444345788999999999999999999873 589999999 599999886653210 12479999999999876
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ++||+|++..+.+++.++ ....++..+.++|||| .+++.
T Consensus 793 ~d~sFDlVV~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 793 RLHDVDIGTCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp TSCSCCEEEEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEE
T ss_pred ccCCeeEEEEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEE
Confidence 5 789999998888777653 3556889999999999 55544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-12 Score=124.69 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=77.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEE--EcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVI--KGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi--~~d~~~~~~~~~ 130 (414)
..+.+.....++.+|||||||+|.++..+++. .+|+|||+++|+..+++..........++.++ ++|+.+++ +++
T Consensus 64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~ 140 (265)
T 2oxt_A 64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VER 140 (265)
T ss_dssp HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCC
T ss_pred HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCC
Confidence 44444444456789999999999999999987 47999999986432221100000012268999 89999876 578
Q ss_pred eeEEEEcCCccccCChh-h-H--HHHHHHHHhccCCCe--EEEcc
Q 015038 131 ADILISEPMGTLLVNER-M-L--ETYVIARDRFLVPMG--KMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~-~-l--~~~l~~~~r~LkpgG--~lip~ 169 (414)
||+|+|+.. +...+.. . . ..++..+.++||||| .+++.
T Consensus 141 fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k 184 (265)
T 2oxt_A 141 TDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVK 184 (265)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 999999866 3332211 0 1 126788899999999 88763
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9e-12 Score=121.67 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh--CCCC-CCcEEEEEccccccc--CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG--NPSL-GERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~--n~~l-~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|+++|+| .+++.|++++.. ++ + ..+++++.+|+.+.. .+++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 35689999999999999999987 56789999999 588999998764 22 2 468999999987742 34789999
Q ss_pred EEcCCccccCChhhH-HHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLLVNERML-ETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~ 171 (414)
++++.......+... ..+++.+.+.|+|||+++....
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 998753322112212 6788999999999999987643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-11 Score=124.54 Aligned_cols=107 Identities=22% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~~ 139 (414)
++++|||+|||+|.+++.+++.|+. |+|+|+| .+++.|+++++.|+ +.. .+.++|+.++. .++.||+|+++++
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng-~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLG-LRV--DIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHT-CCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhC-CCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence 4889999999999999999999886 9999999 59999999999887 554 45689988752 2345999999987
Q ss_pred ccccCC------hhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 140 GTLLVN------ERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 140 ~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
...... ......++..+.++|+|||.++...++.
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 532111 1234577888899999999998766653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=115.62 Aligned_cols=110 Identities=28% Similarity=0.373 Sum_probs=87.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhC-CCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGN-PSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n-~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..+ +.+..+++++.+|+.+...+
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~ 168 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP 168 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC
Confidence 44555666678889999999999999999985 3 4589999999 5889999998765 22456899999999887653
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|+++.. + ...++..+.++|+|||.+++..
T Consensus 169 ~~~~D~v~~~~~-----~---~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 169 DGSVDRAVLDML-----A---PWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp TTCEEEEEEESS-----C---GGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCc-----C---HHHHHHHHHHhCCCCCEEEEEe
Confidence 68999998543 2 3356778889999999997654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.3e-12 Score=110.02 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=72.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.++..+++.+ +|+|+|+|+ |++. . .+++++++|+.+...+++||+|+++++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~-----~~~~~~~~d~~~~~~~~~fD~i~~n~~~ 88 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------H-----RGGNLVRADLLCSINQESVDVVVFNPPY 88 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------C-----SSSCEEECSTTTTBCGGGCSEEEECCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------c-----cCCeEEECChhhhcccCCCCEEEECCCC
Confidence 467799999999999999999988 899999995 7655 1 3588999999884334799999999876
Q ss_pred cccCCh------hhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNE------RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+..... .....++..+.+.| |||.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~ 123 (170)
T 3q87_B 89 VPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV 123 (170)
T ss_dssp BTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred ccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence 643322 11234556666777 999997643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=117.61 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+.|.+.....++.+|||||||+|.++..+++.+. +|+|+|+| .+++.+++++..++ ..++++++.+|+.+++++
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcceecccch
Confidence 3445566666667788999999999999999999865 79999999 59999999887654 446899999999987665
Q ss_pred CceeEEEEcCCccc
Q 015038 129 EKADILISEPMGTL 142 (414)
Q Consensus 129 ~~fDvIis~~~~~~ 142 (414)
.||+|+++++.+.
T Consensus 93 -~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 93 -FFDTCVANLPYQI 105 (285)
T ss_dssp -CCSEEEEECCGGG
T ss_pred -hhcEEEEecCccc
Confidence 8999999877554
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=113.63 Aligned_cols=108 Identities=26% Similarity=0.222 Sum_probs=86.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhC-CCCCCcEEEEEcccccccCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGN-PSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n-~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+.......++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..+ + .++++++.+|+.+.+++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g--~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ--VENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--CCCEEEEESCGGGCCCC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC--CCCEEEEECchhhcCCC
Confidence 34555566678899999999999999999987 4 4589999999 5899999998775 4 35799999999987544
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|++++. + ...++..+.++|+|||.+++..
T Consensus 164 ~~~~D~v~~~~~-----~---~~~~l~~~~~~L~~gG~l~~~~ 198 (258)
T 2pwy_A 164 EAAYDGVALDLM-----E---PWKVLEKAALALKPDRFLVAYL 198 (258)
T ss_dssp TTCEEEEEEESS-----C---GGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCc-----C---HHHHHHHHHHhCCCCCEEEEEe
Confidence 68999998542 2 2456778889999999997643
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=110.91 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCC------CeEEEEeCh-HHHHHHHHHHHhCCCC----CCcEEEEEccccccc---
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGA------KHVYAVEAS-EMAEYARKLIAGNPSL----GERITVIKGKVEEVE--- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~------~~V~gvD~s-~~~~~a~~~~~~n~~l----~~~i~vi~~d~~~~~--- 126 (414)
..++.+|||||||+|.++..+++... .+|+++|++ .+++.|++++..++ + ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC-ccccccCCEEEEECChHhccccc
Confidence 45678999999999999999998743 489999999 58899999987753 2 357999999998753
Q ss_pred -C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 -L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 -~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
. .++||+|++....+.+ +..+.+.|||||++++...
T Consensus 157 ~~~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 157 KKELGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHHCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEE
T ss_pred CccCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEc
Confidence 2 3689999987655432 2556789999999986643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=120.28 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh--CCCCCCcEEEEEccccccc---CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG--NPSLGERITVIKGKVEEVE---LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~~---~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|+++|+| .+++.|++++.. .+....+++++.+|+.++. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 46789999999999999999987 45689999999 488999987632 1112468999999998764 24789999
Q ss_pred EEcCCccccCChhhH-HHHHHHHHhccCCCeEEEcccc
Q 015038 135 ISEPMGTLLVNERML-ETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 135 is~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+++............ ..+++.+.++|||||++++...
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 998765443222111 5788999999999999987643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=119.00 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=81.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh--CCCC-CCcEEEEEcccccc-c-CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG--NPSL-GERITVIKGKVEEV-E-LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~--n~~l-~~~i~vi~~d~~~~-~-~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|+++|+| .+++.|++++.. ++ + ..+++++.+|+.+. . .+++||+|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCceEE
Confidence 35689999999999999999987 56799999999 488999988753 22 3 46899999998774 2 24689999
Q ss_pred EEcCCccccCChh--hHHHHHHHHHhccCCCeEEEcccce
Q 015038 135 ISEPMGTLLVNER--MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 135 is~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++++........ ....+++.+.++|+|||+++...++
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 207 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 207 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence 9986543111111 1267788999999999999887544
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=112.66 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHh-----CCCCCCcEEEEEccccc-cc--C-CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAG-----NPSLGERITVIKGKVEE-VE--L-PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~-----n~~l~~~i~vi~~d~~~-~~--~-~~~ 130 (414)
.++.+|||||||+|.++..+|+.. ...|+|||+| .|++.|++++.. .. ...++.++.+|+.+ ++ + +++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~-~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAG-GFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTC-CCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhc-CCCeEEEEECcHHHhhhhhCCCcC
Confidence 356789999999999999999873 4589999999 599999887653 11 22579999999987 44 3 478
Q ss_pred eeEEEEcCCccccCChh-----hHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNER-----MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~-----~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||.|++..+..+..... ....++..+.++|||||.+++.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99998754432211000 0146888999999999999765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.3e-11 Score=116.54 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHh-------CC--CCCCcEEEEEc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEAS-EMAEYARKLIAG-------NP--SLGERITVIKG 120 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s-~~~~~a~~~~~~-------n~--~l~~~i~vi~~ 120 (414)
..+...+...++.+|||+|||+|.++..+++. |. .+|+|+|++ .+++.|++++.. |+ .+..+++++.+
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 34555556678899999999999999999987 65 689999999 588999998874 22 02357999999
Q ss_pred ccccc--cCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 121 KVEEV--ELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 121 d~~~~--~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+.+. .++ ++||+|+++.... ..++..+.+.|+|||.+++
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~~~~--------~~~l~~~~~~LkpgG~lv~ 217 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDMLNP--------HVTLPVFYPHLKHGGVCAV 217 (336)
T ss_dssp CTTCCC-------EEEEEECSSST--------TTTHHHHGGGEEEEEEEEE
T ss_pred ChHHcccccCCCCeeEEEECCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 99886 333 5799999965422 2256778899999999974
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=110.56 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=80.8
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCC-Cc
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELP-EK 130 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~-~~ 130 (414)
+.+.+. .++.+|||+|||+|.++..+++.| .+|+|+|+| .+++.++++. .+++.+|+.+. +.+ ++
T Consensus 25 l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 25 LLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCc
Confidence 334443 567899999999999999999886 589999999 4777776531 26888998874 333 68
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+|++....+++.+ ...++..+.++|+|||.+++..
T Consensus 94 fD~v~~~~~l~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFD---PWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp EEEEEEESCGGGSSC---HHHHHHHTGGGEEEEEEEEEEE
T ss_pred cCEEEECChhhhcCC---HHHHHHHHHHHcCCCCEEEEEe
Confidence 999999877777665 5788899999999999998753
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=119.63 Aligned_cols=109 Identities=18% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
...+.+.... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+| .+++.|++++..++ +.++++++++|+.+++.
T Consensus 205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~i~~~~~D~~~~~~ 282 (373)
T 3tm4_A 205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDKIKFIQGDATQLSQ 282 (373)
T ss_dssp HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGGCEEEECCGGGGGG
T ss_pred HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCc
Confidence 3444455555 56788999999999999999999875 379999999 59999999999887 77789999999999876
Q ss_pred C-CceeEEEEcCCccccCC-----hhhHHHHHHHHHhcc
Q 015038 128 P-EKADILISEPMGTLLVN-----ERMLETYVIARDRFL 160 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~-----e~~l~~~l~~~~r~L 160 (414)
+ ++||+|+++++...... +.....++..+.+.|
T Consensus 283 ~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 283 YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 5 78999999987543221 122366778888888
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=117.61 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=74.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEE-Eccccccc---C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVI-KGKVEEVE---L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi-~~d~~~~~---~ 127 (414)
.++.......++++|||||||||.++..+++.|+.+|+|||+| .|++.+.+. + .++... ..++..+. +
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~----~rv~~~~~~ni~~l~~~~l 147 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D----DRVRSMEQYNFRYAEPVDF 147 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C----TTEEEECSCCGGGCCGGGC
T ss_pred HHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C----cccceecccCceecchhhC
Confidence 3343333345788999999999999999999998899999999 588764432 1 234333 33554443 2
Q ss_pred CC-ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PE-KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~-~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+. .||+|+++...+. +..++.++.|+|||||.+++.
T Consensus 148 ~~~~fD~v~~d~sf~s------l~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 148 TEGLPSFASIDVSFIS------LNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp TTCCCSEEEECCSSSC------GGGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCCCEEEEEeeHhh------HHHHHHHHHHHcCcCCEEEEE
Confidence 33 4999999765443 366778889999999998764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=113.16 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----cC-C--Cce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV----EL-P--EKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~----~~-~--~~f 131 (414)
.++++|||||||+|..+..+++. + ..+|+++|++ .+++.|++++..++ +.++++++.+|+.+. .. . ++|
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 35789999999999999999986 2 3489999999 58899999988776 667899999998653 11 1 689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
|+|+++.. ......++..+.++|+|||++++...
T Consensus 150 D~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 150 DLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 99998643 22357788899999999999987643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=119.44 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=84.3
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc-ccC--CCceeEEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE-VEL--PEKADILI 135 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~~--~~~fDvIi 135 (414)
..++++|||+| |+|.+++.+++.+. .+|+|+|+| .+++.|+++++.++ +. +++++.+|+.+ ++. .++||+|+
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhhhchhhccCCccEEE
Confidence 34688999999 99999999998876 689999999 59999999998876 65 89999999988 542 35899999
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeE-EEcc
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGK-MFPS 169 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~-lip~ 169 (414)
++++.+.. . ...++..+.+.|||||. ++++
T Consensus 247 ~~~p~~~~---~-~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 247 TDPPETLE---A-IRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp ECCCSSHH---H-HHHHHHHHHHTBCSTTCEEEEE
T ss_pred ECCCCchH---H-HHHHHHHHHHHcccCCeEEEEE
Confidence 99875432 2 57888999999999994 3443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.9e-11 Score=117.63 Aligned_cols=118 Identities=21% Similarity=0.250 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC---------------------------------------CeE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA---------------------------------------KHV 89 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~---------------------------------------~~V 89 (414)
+.+.++++......++..|||.+||+|.+++.++..+. .+|
T Consensus 180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v 259 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI 259 (384)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence 45667777776666788999999999999999887543 259
Q ss_pred EEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCC--CeE
Q 015038 90 YAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT-LLVNERMLETYVIARDRFLVP--MGK 165 (414)
Q Consensus 90 ~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~Lkp--gG~ 165 (414)
+|+|+| .+++.|++++..++ +.++++++++|+.++..+++||+|++||+.. -+..+..+..+...+.+.||+ ||.
T Consensus 260 ~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 260 SGFDFDGRMVEIARKNAREVG-LEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 999999 59999999999987 8888999999999987778999999998854 344455677777777777776 776
Q ss_pred EE
Q 015038 166 MF 167 (414)
Q Consensus 166 li 167 (414)
++
T Consensus 339 ~~ 340 (384)
T 3ldg_A 339 QF 340 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=112.74 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=74.6
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHH----hCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIA----GNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~----~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
..++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.+.+.++ ..+ + .+++++++|+.+++.+...|.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~l~~~~~~d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-L-PNLLYLWATAERLPPLSGVGEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-C-TTEEEEECCSTTCCSCCCEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-C-CceEEEecchhhCCCCCCCCEE
Confidence 4577899999999999999999984 4589999999 47765433332 232 2 4799999999998766322766
Q ss_pred EEcCCccccC--ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLV--NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+......... .-.....++.++.++|||||.+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6432211110 0001267889999999999999874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=120.77 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhC--CCC-CCcEEEEEcccccc-c-CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGN--PSL-GERITVIKGKVEEV-E-LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n--~~l-~~~i~vi~~d~~~~-~-~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++... + + ..+++++.+|+.+. . .+++||+|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 35689999999999999999987 45689999999 5889999987642 2 2 46899999999874 2 34789999
Q ss_pred EEcCCccccCChhhH-HHHHHHHHhccCCCeEEEcccce
Q 015038 135 ISEPMGTLLVNERML-ETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 135 is~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++........+... ..+++.+.++|+|||+++...+.
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 998764432222222 67889999999999999987644
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=118.34 Aligned_cols=110 Identities=17% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh--CCCC-CCcEEEEEcccccc-c-CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG--NPSL-GERITVIKGKVEEV-E-LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~--n~~l-~~~i~vi~~d~~~~-~-~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. ++ + ..+++++.+|+.++ . .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 45689999999999999999987 45689999999 588999998754 22 3 46899999999774 2 24789999
Q ss_pred EEcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 135 ISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 135 is~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++........+. ....+++.+.++|+|||+++.....
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9987654322111 1256788899999999999876533
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=119.92 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhC--CCC-CCcEEEEEcccccc--cC-CCceeE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGN--PSL-GERITVIKGKVEEV--EL-PEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n--~~l-~~~i~vi~~d~~~~--~~-~~~fDv 133 (414)
.++++|||||||+|.++..+++. +..+|+++|+| .+++.|++++... + + ..+++++.+|+.++ .. .++||+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEECCHHHHHHhccCCCccE
Confidence 45689999999999999999987 45689999999 5889999987641 2 3 35899999999875 22 368999
Q ss_pred EEEcCCccccCChhh-HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 134 LISEPMGTLLVNERM-LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 134 Iis~~~~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|++++.......+.. ...++..+.++|+|||++++.....+
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 999865332211211 36788999999999999998755443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=117.65 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=82.0
Q ss_pred CEEEEECCCccHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEcCC
Q 015038 65 RVVVDVGAGSGILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISEPM 139 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~~~ 139 (414)
.+|||||||+|.++..+++ ....+|++||++ .+++.|++++... ...+++++.+|+.++. . .++||+|+++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~--~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP--RAPRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC--CTTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc--CCCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 4999999999999999998 444489999999 5899999987643 2468999999998762 2 368999999865
Q ss_pred ccccCChhh-HHHHHHHHHhccCCCeEEEcccc
Q 015038 140 GTLLVNERM-LETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 140 ~~~l~~e~~-l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
......... -..+++.+.+.|+|||+++....
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 443222111 26788999999999999987654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=119.10 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=83.7
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
.+.+.....++.+|||||||+|.++..+++.. ..+++++|+++++. +++....+ +.++++++.+|+.+ +.+ +||
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~-~~~~v~~~~~d~~~-~~p-~~D 249 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPD-VAGRWKVVEGDFLR-EVP-HAD 249 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGG-GTTSEEEEECCTTT-CCC-CCS
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccC-CCCCeEEEecCCCC-CCC-CCc
Confidence 44455555567899999999999999998863 34799999986554 32222222 55789999999973 345 999
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+|++..+.|++.++ ....+++++.+.|||||++++..
T Consensus 250 ~v~~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 250 VHVLKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEEEehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 99998887776543 34688899999999999998754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.21 E-value=5.1e-11 Score=111.45 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhC--------CCCCCcEEEEEccccc-cc--C-
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGN--------PSLGERITVIKGKVEE-VE--L- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n--------~~l~~~i~vi~~d~~~-~~--~- 127 (414)
.++.+|||||||+|.+++.+++.+. .+|+|||+| .+++.|++++..+ + + .++.++.+|+.+ ++ +
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-F-QNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-T-TTEEEEECCTTSCGGGTSC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-C-CcEEEEeccHHHHHHHhcc
Confidence 3567999999999999999999864 389999999 5889998887754 3 3 479999999987 33 2
Q ss_pred CCceeEEEEcCCccccCCh-----hhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTLLVNE-----RMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+.+|.|+...+....... .....++..+.++|+|||.+++
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 3679999865432221000 0014688889999999999976
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=110.24 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=81.1
Q ss_pred HHHHHhc--CCCCCCEEEEECCCccHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHhCCCC----CCcEEEE
Q 015038 53 AAVIENR--ADFIGRVVVDVGAGSGILSLFAAQA-GA------KHVYAVEAS-EMAEYARKLIAGNPSL----GERITVI 118 (414)
Q Consensus 53 ~ai~~~~--~~~~~~~VLDiGcGtG~ls~~~a~~-g~------~~V~gvD~s-~~~~~a~~~~~~n~~l----~~~i~vi 118 (414)
..+.+.+ ...++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|++++..++ . ..+++++
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~ 150 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIV 150 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEE
Confidence 3344444 2456789999999999999999885 43 489999999 58899998876532 1 2469999
Q ss_pred EcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 119 KGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 119 ~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+|+.+.... ++||+|++....+.+. ..+.+.|||||++++...
T Consensus 151 ~~d~~~~~~~~~~fD~I~~~~~~~~~~---------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 151 EGDGRKGYPPNAPYNAIHVGAAAPDTP---------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEEES
T ss_pred ECCcccCCCcCCCccEEEECCchHHHH---------HHHHHHhcCCCEEEEEEe
Confidence 9999873222 6899999976655432 456789999999986543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=119.74 Aligned_cols=118 Identities=20% Similarity=0.182 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC---------------------------------------CeE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA---------------------------------------KHV 89 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~---------------------------------------~~V 89 (414)
+.+.+++.......++.+|||+|||+|.+++.++..+. .+|
T Consensus 181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 260 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI 260 (385)
T ss_dssp HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence 44666777776666788999999999999999987642 369
Q ss_pred EEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc-ccCChhhHHHHHHHHHhccCC--CeE
Q 015038 90 YAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT-LLVNERMLETYVIARDRFLVP--MGK 165 (414)
Q Consensus 90 ~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~Lkp--gG~ 165 (414)
+|+|++ .+++.|++++..++ +.++|++.++|+.++..+++||+|++||+.. .+..+..+..+...+.+.||+ ||.
T Consensus 261 ~GvDid~~ai~~Ar~Na~~~g-l~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 261 YGYDIDEESIDIARENAEIAG-VDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999 59999999999887 7778999999999987778999999999853 232334466677777677765 665
Q ss_pred EE
Q 015038 166 MF 167 (414)
Q Consensus 166 li 167 (414)
++
T Consensus 340 ~~ 341 (385)
T 3ldu_A 340 YY 341 (385)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=125.08 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEE-EEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERIT-VIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~-vi~~d~~~~~~~ 128 (414)
+.+.+.+.+...++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ + ...... +...+...++.+
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~-~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----G-IRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----T-CCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----C-CCcceeeechhhHhhcccC
Confidence 455666666666788999999999999999999887 79999999 588888765 2 221111 222344444333
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|++..+.+++.+ +..+++.+.++|||||++++.
T Consensus 169 ~~~fD~I~~~~vl~h~~d---~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPY---VQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp HCCEEEEEEESCGGGCTT---HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEEECChHHhcCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 78999999888888764 788999999999999999865
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-11 Score=114.42 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChH-HHHHHHHHHHhCC-CC-CCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASE-MAEYARKLIAGNP-SL-GERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~-~~~~a~~~~~~n~-~l-~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
.++++|||||||+|.++..+++.. ..+|+++|+++ +++.|++++...+ .+ ..+++++.+|+.+.. .+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456899999999999999999873 56899999995 8899999875421 01 368999999998752 257899999
Q ss_pred EcCCccccCChhhH-HHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNERML-ETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~~l-~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++........+... ..+++.+.+.|+|||+++....+
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 97654433222211 67889999999999999877544
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=117.83 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHh-CCC-C-CCcEEEEEcccccc-c-CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAG-NPS-L-GERITVIKGKVEEV-E-LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~-n~~-l-~~~i~vi~~d~~~~-~-~~~~fDvI 134 (414)
.++++|||||||+|.++..+++. +..+|++||++ .+++.|++++.. +.+ + ..+++++.+|+.++ . .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35689999999999999999987 46689999999 488999988753 111 2 36899999999874 2 34789999
Q ss_pred EEcCCccc---cCChhh-HHHHHHHHHhccCCCeEEEcccce
Q 015038 135 ISEPMGTL---LVNERM-LETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 135 is~~~~~~---l~~e~~-l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+++...+. ...+.. ...+++.+.+.|||||++++...+
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99876544 111111 367889999999999999987544
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-11 Score=118.92 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC---------------------------------------CeE
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA---------------------------------------KHV 89 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~---------------------------------------~~V 89 (414)
+.+.++++......++..|||++||+|.+++.+|..+. .+|
T Consensus 187 e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V 266 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNI 266 (393)
T ss_dssp HHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceE
Confidence 45667777776666788999999999999999887643 259
Q ss_pred EEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc-cCChhhHHHHHHHHHhccCC--CeE
Q 015038 90 YAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL-LVNERMLETYVIARDRFLVP--MGK 165 (414)
Q Consensus 90 ~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~-l~~e~~l~~~l~~~~r~Lkp--gG~ 165 (414)
+|+|+| .+++.|++++..++ +.++++++++|+.++..+++||+|++||+... +..+..+..+...+.+.||+ ||.
T Consensus 267 ~GvDid~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 267 IGGDIDARLIEIAKQNAVEAG-LGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEEESCHHHHHHHHHHHHHTT-CTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 999999 59999999999987 77889999999999877789999999988532 22234456666666666665 776
Q ss_pred EEc
Q 015038 166 MFP 168 (414)
Q Consensus 166 lip 168 (414)
+++
T Consensus 346 ~~i 348 (393)
T 3k0b_A 346 VYV 348 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=122.45 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=89.6
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCcee
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKAD 132 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fD 132 (414)
.+...++.+|||+|||+|..+..+|+. +..+|+|+|+| .+++.++++++.++ +. +.++++|+.++. .+++||
T Consensus 96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~l~~~~~~~FD 172 (464)
T 3m6w_A 96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRALAEAFGTYFH 172 (464)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHHHHHHHCSCEE
T ss_pred hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHHhhhhccccCC
Confidence 344567899999999999999999976 33589999999 59999999999876 54 999999998875 357899
Q ss_pred EEEEcCCcccc--C--C--------hh-------hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 133 ILISEPMGTLL--V--N--------ER-------MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 133 vIis~~~~~~l--~--~--------e~-------~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
+|+++++.+.. . . +. ....++..+.++|||||+++.+.|++.
T Consensus 173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 99998763211 0 0 01 126788999999999999998877744
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-11 Score=109.89 Aligned_cols=90 Identities=27% Similarity=0.309 Sum_probs=75.5
Q ss_pred CCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCcc
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMGT 141 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~ 141 (414)
+.+|||||||+|.++..+++. +|+|+| .+++.|+++ +++++.+|+.+++.+ ++||+|++..+.+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEcchHh
Confidence 789999999999999887653 999999 588888765 378999999887765 5899999987777
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++.+ +..++..+.++|+|||.+++..
T Consensus 114 ~~~~---~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 114 FVDD---PERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp GSSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 7654 6788899999999999998753
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.8e-11 Score=103.54 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc--------CC-C
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GA-KHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE--------LP-E 129 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~-~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------~~-~ 129 (414)
..++.+|||+|||+|.++..+++. |. .+|+|+|+++++. . .+++++.+|+.+.+ .+ +
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----------~-~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----------I-VGVDFLQGDFRDELVMKALLERVGDS 87 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----------C-TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----------c-CcEEEEEcccccchhhhhhhccCCCC
Confidence 456789999999999999999987 54 6899999998321 1 46899999998864 44 6
Q ss_pred ceeEEEEcCCccccCChh--h------HHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNER--M------LETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~--~------l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+++.+.+...... . ...++..+.++|+|||.+++.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 899999987765543321 0 157888999999999999753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-11 Score=120.36 Aligned_cols=120 Identities=17% Similarity=0.080 Sum_probs=92.2
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeE
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADI 133 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDv 133 (414)
+...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++.++ +. ++.++++|..++. .+++||+
T Consensus 101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~~-nv~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-VS-NAIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-CS-SEEEECCCHHHHHHHHTTCEEE
T ss_pred cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeCCHHHhhhhccccCCE
Confidence 44567899999999999999998876 34589999999 58999999999876 54 6999999998874 3578999
Q ss_pred EEEcCCcccc----CChh---------------hHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 134 LISEPMGTLL----VNER---------------MLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 134 Iis~~~~~~l----~~e~---------------~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
|+++++-+.. .++. ....++..+.++|||||.++.+.|++. |-+.+.
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~--~eEne~ 244 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA--PEENEE 244 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC--GGGTHH
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc--cccCHH
Confidence 9998873221 1111 123678889999999999998887754 444443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-11 Score=111.84 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-H-HHHHH---HHHHHhCCCCCCcEEEEEcccccccC--CCceeE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-E-MAEYA---RKLIAGNPSLGERITVIKGKVEEVEL--PEKADI 133 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~-~~~~a---~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDv 133 (414)
.++.+|||||||+|.++..+++. ...+|+|||+| + |++.| ++++...+ + .++.++.+|+++++. .+.+|.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~-~-~~v~~~~~d~~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG-L-SNVVFVIAAAESLPFELKNIADS 100 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC-C-SSEEEECCBTTBCCGGGTTCEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC-C-CCeEEEEcCHHHhhhhccCeEEE
Confidence 46789999999999999999865 33479999999 6 66665 76666654 3 469999999998742 245666
Q ss_pred EEEcCCccccCC--hhhHHHHHHHHHhccCCCeEEEc
Q 015038 134 LISEPMGTLLVN--ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 134 Iis~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|.++.+...... ......++.++.|+|||||.+++
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 666543222100 00124578899999999999987
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=110.16 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=80.5
Q ss_pred CCCEEEEECCCccH----HHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHh-----------------------CC
Q 015038 63 IGRVVVDVGAGSGI----LSLFAAQA-G----AKHVYAVEAS-EMAEYARKLIAG-----------------------NP 109 (414)
Q Consensus 63 ~~~~VLDiGcGtG~----ls~~~a~~-g----~~~V~gvD~s-~~~~~a~~~~~~-----------------------n~ 109 (414)
++.+|||+|||||. +++.+++. + ..+|+|+|+| .|++.|++.+.. ++
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 66767765 3 1379999999 599999986410 00
Q ss_pred ------CCCCcEEEEEcccccccC--CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 110 ------SLGERITVIKGKVEEVEL--PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 110 ------~l~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+..+|.+.++|+.+.+. .++||+|+|..+..++. ......++..+.+.|+|||.+++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~-~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCC-HHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 011369999999988544 36899999977666654 4446888999999999999998753
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=112.79 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=75.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---cC-CC-ce
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-----GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---EL-PE-KA 131 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-----g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~-~~-~f 131 (414)
++.+|||||||+|..+..+++. ...+|+|||+| .+++.|+. +..+++++++|+.+. +. .+ +|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-------~~~~v~~~~gD~~~~~~l~~~~~~~f 153 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-------DMENITLHQGDCSDLTTFEHLREMAH 153 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-------GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-------cCCceEEEECcchhHHHHHhhccCCC
Confidence 5679999999999999999986 24589999999 57777661 335799999999884 32 33 79
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHh-ccCCCeEEEcccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDR-FLVPMGKMFPSVG 171 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r-~LkpgG~lip~~~ 171 (414)
|+|+++.. + . ....++.++.+ .|||||++++...
T Consensus 154 D~I~~d~~-~----~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 154 PLIFIDNA-H----A-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SEEEEESS-C----S-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CEEEECCc-h----H-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 99998653 2 1 35678888887 9999999988654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=113.07 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.....++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++..++ + .+++++.+|+.+++.+
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~-~-~~v~~~~~D~~~~~~~- 105 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEG-Y-NNLEVYEGDAIKTVFP- 105 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTT-C-CCEEC----CCSSCCC-
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECchhhCCcc-
Confidence 344555666666788999999999999999998754 79999999 59999999987665 4 5799999999987654
Q ss_pred ceeEEEEcCCccc
Q 015038 130 KADILISEPMGTL 142 (414)
Q Consensus 130 ~fDvIis~~~~~~ 142 (414)
+||+|+++++.+.
T Consensus 106 ~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 106 KFDVCTANIPYKI 118 (299)
T ss_dssp CCSEEEEECCGGG
T ss_pred cCCEEEEcCCccc
Confidence 8999999987554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-10 Score=114.65 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=79.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||+|||+|.+++.+++.+. +|+|+|+| .+++.|++++..|+ +. ++++.+|+.++.. .+||+|+++++.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ng-l~--v~~~~~d~~~~~~-~~fD~Vv~dPPr 363 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINN-VD--AEFEVASDREVSV-KGFDTVIVDPPR 363 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHT-CC--EEEEECCTTTCCC-TTCSEEEECCCT
T ss_pred CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEECChHHcCc-cCCCEEEEcCCc
Confidence 4678999999999999999999754 79999999 59999999998876 54 9999999998743 389999999874
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..+ . +.++..+. .|+|+|+++++..
T Consensus 364 ~g~-~----~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 364 AGL-H----PRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp TCS-C----HHHHHHHH-HHCCSEEEEEESC
T ss_pred cch-H----HHHHHHHH-hcCCCcEEEEECC
Confidence 332 1 23444443 4899999987653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=119.01 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=89.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~ 137 (414)
++.+|||+|||+|..+..+|+. +..+|+|+|+| .+++.++++++.++ + .+++++++|+.++. .+++||+|+++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~-~nv~~~~~D~~~~~~~~~~~fD~Il~D 194 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCG-I-SNVALTHFDGRVFGAAVPEMFDAILLD 194 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCCSTTHHHHSTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHhhhhccccCCEEEEC
Confidence 7889999999999999999886 23589999999 59999999998876 4 36999999998875 35789999998
Q ss_pred CCcccc----CCh---------------hhHHHHHHHHHhccCCCeEEEcccceeEEeeccchH
Q 015038 138 PMGTLL----VNE---------------RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEY 182 (414)
Q Consensus 138 ~~~~~l----~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~ 182 (414)
++.+.. .++ .....++..+.++|||||+++.+.+++. +.+.+.
T Consensus 195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~--~~Ene~ 256 (479)
T 2frx_A 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN--QEENEA 256 (479)
T ss_dssp CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS--STTTHH
T ss_pred CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC--cccCHH
Confidence 764311 111 0124678888999999999998877754 444443
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-11 Score=113.83 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=67.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEE-ccccccc---C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIK-GKVEEVE---L 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~-~d~~~~~---~ 127 (414)
+++.......++++|||||||+|.++..+++.|+.+|+|+|+| .|++.|+++.. ++.... .++..+. .
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~-------~~~~~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE-------RVVVMEQFNFRNAVLADF 99 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT-------TEEEECSCCGGGCCGGGC
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc-------cccccccceEEEeCHhHc
Confidence 3343333345678999999999999999999988799999999 58887665421 222211 1222111 1
Q ss_pred CC-ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 PE-KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~-~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+. .+|.+.++.....+ ..++.++.|+|||||.+++
T Consensus 100 ~~~~~d~~~~D~v~~~l------~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 100 EQGRPSFTSIDVSFISL------DLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp CSCCCSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEE
T ss_pred CcCCCCEEEEEEEhhhH------HHHHHHHHHhccCCCEEEE
Confidence 12 25555554433332 5677888999999999986
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=104.52 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=71.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-C--CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc------------
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-G--AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE------------ 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g--~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------------ 126 (414)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|++. ...+++++++|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------------~~~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------------PIPNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------------CCTTCEEEECCTTTTSSCCC--------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------------CCCCceEEEccccchhhhhhcccccccc
Confidence 46779999999999999999986 3 3589999999742 1135899999998765
Q ss_pred -------------CC-CceeEEEEcCCccccCC--hh------hHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -------------LP-EKADILISEPMGTLLVN--ER------MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -------------~~-~~fDvIis~~~~~~l~~--e~------~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++ ++||+|+++...+.... .. ....++..+.++|||||.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 153 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK 153 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 33 58999999865443211 11 1234778899999999999863
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=103.63 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------C----C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------P----E 129 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------~----~ 129 (414)
.++.+|||+|||+|.++..+++.+ .+|+|+|++++. ...+++++++|+.+... + +
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~~------------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEME------------EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCCC------------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEeccccc------------cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 467899999999999999999884 479999999641 12469999999987531 1 4
Q ss_pred ceeEEEEcCCccccCC--------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVN--------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+|++....... ....+.++..+.++|||||.++..
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k 138 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK 138 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 8999999864321111 112356778889999999999743
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.7e-10 Score=113.27 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE- 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~- 126 (414)
..+.+.+.+.+...++.+|||+|||+|.+++.+++. ..+|+|+|+| .+++.|++++..++ +. +++++.+|+.+..
T Consensus 272 e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~-~~-~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 272 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNG-LQ-NVTFYHENLEEDVT 348 (433)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTT-CC-SEEEEECCTTSCCS
T ss_pred HHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEECCHHHHhh
Confidence 344455555555567789999999999999999988 4589999999 59999999999886 54 7999999998732
Q ss_pred ---C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 ---L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 ---~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
. .++||+|+++++-.... .+++.+. .++|+++++++..
T Consensus 349 ~~~~~~~~fD~Vv~dPPr~g~~------~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 349 KQPWAKNGFDKVLLDPARAGAA------GVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp SSGGGTTCCSEEEECCCTTCCH------HHHHHHH-HHCCSEEEEEESC
T ss_pred hhhhhcCCCCEEEECCCCccHH------HHHHHHH-hcCCCeEEEEECC
Confidence 2 25799999998865432 2333333 3789998876543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.1e-11 Score=114.91 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=84.7
Q ss_pred hHHHhhhhhhhhH-------hhhh------hhhhhHHHHH-HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEE
Q 015038 27 MYFHYYGQLLHQQ-------NMLQ------DYVRTGTYYA-AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAV 92 (414)
Q Consensus 27 ~yf~~Y~~~~~~~-------~ml~------d~~r~~~~~~-ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gv 92 (414)
.||..|.....++ .|+. +++....|.- .+.+.....++.+|||||||+|.++..+++. .+|+||
T Consensus 32 ~~f~~y~~~~i~e~~~~~a~~~l~~g~~~~~~~sR~a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gv 109 (305)
T 2p41_A 32 SEFQIYKKSGIQEVDRTLAKEGIKRGETDHHAVSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREV 109 (305)
T ss_dssp HHHHHHHHTTCEEEECHHHHHHHHTTCCSSCCSSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEE
T ss_pred HHHHHhcccCccccCHHHHHHHHHcCCCcCCccccHHHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEE
Confidence 4777777544322 2442 2233344432 2233322345789999999999999999988 369999
Q ss_pred eC----h-HHHHHHHHHHHhCCCC-CCcEEEEEc-ccccccCCCceeEEEEcCCcc---ccCChhhHHHHHHHHHhccCC
Q 015038 93 EA----S-EMAEYARKLIAGNPSL-GERITVIKG-KVEEVELPEKADILISEPMGT---LLVNERMLETYVIARDRFLVP 162 (414)
Q Consensus 93 D~----s-~~~~~a~~~~~~n~~l-~~~i~vi~~-d~~~~~~~~~fDvIis~~~~~---~l~~e~~l~~~l~~~~r~Lkp 162 (414)
|+ + .+++.+ ..+. . .++++++.+ |+.+++ +++||+|+|+...+ ...+......++..+.++|||
T Consensus 110 D~~~~~~~~~~~~~----~~~~-~~~~~v~~~~~~D~~~l~-~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~Lkp 183 (305)
T 2p41_A 110 KGLTKGGPGHEEPI----PMST-YGWNLVRLQSGVDVFFIP-PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN 183 (305)
T ss_dssp EEECCCSTTSCCCC----CCCS-TTGGGEEEECSCCTTTSC-CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT
T ss_pred eccccCchhHHHHH----Hhhh-cCCCCeEEEeccccccCC-cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCC
Confidence 99 4 332111 0111 1 146999999 888764 46899999987643 111111111467888899999
Q ss_pred CeEEEcc
Q 015038 163 MGKMFPS 169 (414)
Q Consensus 163 gG~lip~ 169 (414)
||.+++.
T Consensus 184 GG~~v~k 190 (305)
T 2p41_A 184 NTQFCVK 190 (305)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9988763
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=115.83 Aligned_cols=101 Identities=16% Similarity=0.044 Sum_probs=83.3
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCc-EEEEEccccccc---CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGER-ITVIKGKVEEVE---LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~-i~vi~~d~~~~~---~~~~fDvI 134 (414)
.++.+|||++||+|.+++.+++. |+++|+++|+++ .++.++++++.|+ +.++ ++++++|+.++. ..++||+|
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da~~~l~~~~~~~fD~V 129 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEANFFLRKEWGFGFDYV 129 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence 35789999999999999999984 667999999994 8899999999997 7777 999999997753 24689999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.++.+. ...++..+.+.|++||+++.+.
T Consensus 130 ~lDP~g~-------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 130 DLDPFGT-------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EECCSSC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcC-------HHHHHHHHHHHhCCCCEEEEEe
Confidence 9998322 2456777788899999887654
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-10 Score=108.17 Aligned_cols=120 Identities=16% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcC-CCCCCEEEEECCCc---cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc
Q 015038 49 GTYYAAVIENRA-DFIGRVVVDVGAGS---GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV 122 (414)
Q Consensus 49 ~~~~~ai~~~~~-~~~~~~VLDiGcGt---G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~ 122 (414)
..|.....+.+. ......|||||||+ |.+...+.+. ...+|++||.|+ |+..|++++...+ ..+++++++|+
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~ 140 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCT
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecc
Confidence 455555555443 23346899999997 3443333332 445899999995 9999999886542 35799999999
Q ss_pred ccccC-------CCcee-----EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEVEL-------PEKAD-----ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~~~-------~~~fD-----vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+... .+.|| .|+++.+.|++.++..+..++..+.+.|+|||.++++.
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 88521 13455 58888899999877667889999999999999998764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-10 Score=114.27 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=89.0
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-Cce
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-EKA 131 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-~~f 131 (414)
.+...++.+|||+|||+|..+..+++. + ..+|+|+|++ .+++.+++++..++ + .+++++.+|+.++. .+ ++|
T Consensus 254 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 254 VLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG-I-KIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCTTCCSSSSCSSCE
T ss_pred hcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEEEcChhhcchhhccCCC
Confidence 344567889999999999999999885 3 2589999999 58899999998876 4 46999999998875 34 689
Q ss_pred eEEEEcCCccccC----Ch--------hh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 132 DILISEPMGTLLV----NE--------RM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 132 DvIis~~~~~~l~----~e--------~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|+|+++++.+... .. .. ...++..+.++|||||.++.+.++++
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999987643211 00 11 15678999999999999998777643
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=111.53 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=82.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC------CeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA------KHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~------~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
.++.+|||+|||+|.++..+++... .+|+|+|+++ +++.|+.++..++ + ++.++++|.......++||+|
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLANLLVDPVDVV 205 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTSCCCCCCEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCCccccCCccEE
Confidence 3567999999999999998887632 5799999995 8899999887665 4 589999998775445789999
Q ss_pred EEcCCccccCChhh--------------H-HHHHHHHHhccCCCeEEEccc
Q 015038 135 ISEPMGTLLVNERM--------------L-ETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 135 is~~~~~~l~~e~~--------------l-~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++++..+...... . ..++..+.+.|+|||++++..
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 99998654432211 1 257888889999999986554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=110.89 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHhcC-CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRA-DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+..... ..+..+|||||||+|.++..+++. +..+++++|+.++++.|++ ..+++++.+|+.+ +.+.. |
T Consensus 194 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~v~~~~~d~~~-~~p~~-D 263 (368)
T 3reo_A 194 ILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA--------FSGVEHLGGDMFD-GVPKG-D 263 (368)
T ss_dssp HHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC--------CTTEEEEECCTTT-CCCCC-S
T ss_pred HHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh--------cCCCEEEecCCCC-CCCCC-C
Confidence 444443 344679999999999999999886 3448999999667655442 1479999999987 55544 9
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|++..+.|++.++ ....+++++++.|||||++++...
T Consensus 264 ~v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 264 AIFIKWICHDWSDE-HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp EEEEESCGGGBCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEEEechhhcCCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998888776543 356788999999999999987543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=103.99 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
..+.+|||||||+|.|++.+. +..+|+|+|++ .+++.+++++..++ .+..+..+|....++++++|+|++..+.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g---~~~~~~v~D~~~~~~~~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD---WDFTFALQDVLCAPPAEAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT---CEEEEEECCTTTSCCCCBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeecccCCCCCCcchHHHHHHH
Confidence 457899999999999999887 66789999999 59999999988764 5688999999988888999999998777
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+++..+.. ...+ ++...|+++|+++
T Consensus 179 h~LE~q~~-~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 179 PLLEREQA-GSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHHST-THHH-HHHHHCBCSEEEE
T ss_pred HHhhhhch-hhHH-HHHHHhcCCCEEE
Confidence 77754432 2333 5556899998875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-10 Score=101.47 Aligned_cols=96 Identities=25% Similarity=0.275 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CC---------CeEEEEeChHHHHHHHHHHHhCCCCCCcEEEE-Eccccccc----
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GA---------KHVYAVEASEMAEYARKLIAGNPSLGERITVI-KGKVEEVE---- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~---------~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi-~~d~~~~~---- 126 (414)
.++.+|||+|||+|.++..+++. |. .+|+|+|+|++. ...+++++ .+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------------cCCCCeEEEeccCCCHHHHHH
Confidence 46789999999999999999987 54 689999999731 11357888 88887643
Q ss_pred ----CC-CceeEEEEcCCccccCC----h----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 ----LP-EKADILISEPMGTLLVN----E----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ----~~-~~fDvIis~~~~~~l~~----e----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+ ++||+|+|+...+.... . .....++..+.++|||||.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 48999999764332111 1 01147788899999999999865
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=122.34 Aligned_cols=100 Identities=23% Similarity=0.254 Sum_probs=78.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cC-CCceeEEEEcC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--EL-PEKADILISEP 138 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~-~~~fDvIis~~ 138 (414)
++.+|||||||.|.++..+|+.|+ .|+|||++ .+++.|+..+..++. -+|++.+++++++ .. +++||+|+|.-
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHHHHhhhccCCCccEEEECc
Confidence 567999999999999999999998 59999999 599999999887652 3699999999987 22 46899999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEE
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
+.+++.+...+..+ .++.+.|+++|..
T Consensus 143 ~~ehv~~~~~~~~~-~~~~~tl~~~~~~ 169 (569)
T 4azs_A 143 VFHHIVHLHGIDEV-KRLLSRLADVTQA 169 (569)
T ss_dssp CHHHHHHHHCHHHH-HHHHHHHHHHSSE
T ss_pred chhcCCCHHHHHHH-HHHHHHhccccce
Confidence 88887665433332 2344556666654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=107.32 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
+.++..+.... ....+|||||||+|.+++.++.. +..+|+|+|++ .+++.+++++..++ + +..+...|...-.
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g-~--~~~~~v~D~~~~~ 194 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN-V--PHRTNVADLLEDR 194 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT-C--CEEEEECCTTTSC
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC-C--CceEEEeeecccC
Confidence 33445555554 34679999999999999999887 66799999999 59999999999876 4 4788888988877
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+++++|++++....+++..++. ...+ .+...|+++|+++
T Consensus 195 p~~~~DvaL~lkti~~Le~q~k-g~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQR-GSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHST-THHH-HHHHHSSCSEEEE
T ss_pred CCCCcchHHHHHHHHHhhhhhh-HHHH-HHHHHhCCCCEEE
Confidence 7899999999888888765442 2333 5678899999875
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=107.49 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=88.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+..........+|||||||+|.++..++++ +..+++..|..++++.|++++... ..++|+++.+|+.+.+. ..+
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~--~~~rv~~~~gD~~~~~~-~~~ 245 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQ--EEEQIDFQEGDFFKDPL-PEA 245 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC----CCSEEEEESCTTTSCC-CCC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhc--ccCceeeecCccccCCC-CCc
Confidence 34445444455679999999999999999987 344788999888999998887653 46899999999987544 468
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|++++..+.|.+.++. ...+|+++++.|+|||++++..
T Consensus 246 D~~~~~~vlh~~~d~~-~~~iL~~~~~al~pgg~lli~e 283 (353)
T 4a6d_A 246 DLYILARVLHDWADGK-CSHLLERIYHTCKPGGGILVIE 283 (353)
T ss_dssp SEEEEESSGGGSCHHH-HHHHHHHHHHHCCTTCEEEEEE
T ss_pred eEEEeeeecccCCHHH-HHHHHHHHHhhCCCCCEEEEEE
Confidence 9999988887765544 5678899999999999987654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-10 Score=113.45 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=80.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.+.+.+...++.+|||+|||+|.++..+++. +..+|+|+|+++ +++.| .+++++++|+.+...
T Consensus 27 l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 27 VVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP 95 (421)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC
T ss_pred HHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc
Confidence 3444555554445679999999999999999975 346899999995 65544 358999999998766
Q ss_pred CCceeEEEEcCCccccCC---------hhh-----------------HHHHHHHHHhccCCCeEEEccc
Q 015038 128 PEKADILISEPMGTLLVN---------ERM-----------------LETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~---------e~~-----------------l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.++||+|++||+...... +.. ...++..+.++|+|||.+++..
T Consensus 96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~ 164 (421)
T 2ih2_A 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 164 (421)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 679999999988543322 111 1256888899999999986543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.5e-10 Score=112.67 Aligned_cols=115 Identities=14% Similarity=0.046 Sum_probs=89.0
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC-Cce
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-EKA 131 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-~~f 131 (414)
..+...++.+|||+|||+|..+..+++.+. .+|+|+|++ .+++.+++++..++ + +++++.+|+.++. .+ ++|
T Consensus 240 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~--~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 240 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-M--KATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-C--CCEEEECCTTCTHHHHTTCCE
T ss_pred HHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC-C--CeEEEeCchhhchhhcccCCC
Confidence 334456788999999999999999998743 589999999 58999999998876 4 4789999998865 33 689
Q ss_pred eEEEEcCCccccC----Ch--------hh-------HHHHHHHHHhccCCCeEEEcccceeE
Q 015038 132 DILISEPMGTLLV----NE--------RM-------LETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 132 DvIis~~~~~~l~----~e--------~~-------l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|+|+++++.+... .. .. ...++..+.++|||||.++.+.++++
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9999987643211 11 11 14778899999999999998877643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.2e-10 Score=106.97 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
.++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. .++.++.+|+.+++.+ ++||+|++..
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~ 156 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAIIRIY 156 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeEEEEeC
Confidence 46789999999999999999987 23489999999 5888887753 3478999999887655 6899999854
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. ..+..+.++|||||.+++.
T Consensus 157 ~~----------~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 157 AP----------CKAEELARVVKPGGWVITA 177 (269)
T ss_dssp CC----------CCHHHHHHHEEEEEEEEEE
T ss_pred Ch----------hhHHHHHHhcCCCcEEEEE
Confidence 31 1356778999999999764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-10 Score=109.52 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=81.6
Q ss_pred HHHhcC-CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 55 VIENRA-DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 55 i~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
+..... ..+..+|||||||+|.++..+++. +..+++++|+.++++.|++ ..+++++.+|+.+ +.+.. |
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~v~~~~~D~~~-~~p~~-D 261 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ--------FPGVTHVGGDMFK-EVPSG-D 261 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC--------CTTEEEEECCTTT-CCCCC-S
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh--------cCCeEEEeCCcCC-CCCCC-C
Confidence 444443 345689999999999999999886 3448999999667655442 2479999999987 55544 9
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|++..+.|.+.++ ....+++++++.|||||++++...
T Consensus 262 ~v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 262 TILMKWILHDWSDQ-HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEEehHHhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998877776543 467889999999999999987543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-10 Score=110.75 Aligned_cols=98 Identities=13% Similarity=-0.007 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh--CCCCCCcEEEEEcccccccCCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG--NPSLGERITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~--n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
..+++|||||||+|.++..+++.+ .+|+++|++ .+++.|++++.. ++...++++++.+|..++. ++||+|+++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 356899999999999999998887 899999999 488888876532 1101358999999998865 7899999973
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. + ...+++.+.+.|+|||+++...
T Consensus 148 ~-----d---p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 E-----P---DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp C-----C---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred C-----C---hHHHHHHHHHhcCCCcEEEEEc
Confidence 2 2 1237889999999999998753
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=112.64 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=81.5
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhC---------------CCCCCcEEEEEcccccc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGN---------------PSLGERITVIKGKVEEV 125 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n---------------~~l~~~i~vi~~d~~~~ 125 (414)
++.+|||+|||+|.+++.+++. ++.+|+++|++ ..++.++++++.| + +.+ ++++++|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~~-i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EKT-IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SSE-EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CCc-eEEEcCcHHHH
Confidence 6789999999999999999987 66789999999 5889999999988 5 543 99999999876
Q ss_pred c--CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 E--LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~--~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
. ..++||+|+.++++. ...++..+.+.||+||.++.+.
T Consensus 125 ~~~~~~~fD~I~lDP~~~-------~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 125 MAERHRYFHFIDLDPFGS-------PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHSTTCEEEEEECCSSC-------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhccCCCCEEEeCCCCC-------HHHHHHHHHHhcCCCCEEEEEe
Confidence 3 235899999987643 2466777788999999887653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.1e-10 Score=102.49 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..++ .+|+|+|+|+. ++.++.+|+.+++.+ ++||+|++....
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l 125 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSL 125 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence 466899999999999988773 47999999853 256888999887654 689999997666
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++ ..+..++..+.++|+|||.+++..
T Consensus 126 ~~----~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 126 MG----TNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp CS----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc----cCHHHHHHHHHHhCCCCeEEEEEE
Confidence 52 236888899999999999998753
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=7.1e-10 Score=110.07 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=82.3
Q ss_pred HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+.+... ..++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++ . .+++++.+|+.+ +.+.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~-~~v~~~~~d~~~-~~~~- 267 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP-------L-SGIEHVGGDMFA-SVPQ- 267 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------C-TTEEEEECCTTT-CCCC-
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh-------c-CCCEEEeCCccc-CCCC-
Confidence 34444443 3456799999999999999999874 347899999557765543 1 359999999987 5555
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
||+|++..+.|++.++. ...+++++.+.|||||.+++...
T Consensus 268 ~D~v~~~~~lh~~~d~~-~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEK-CIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEEEEESSGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEecccccCCHHH-HHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999988877765432 45888999999999999987643
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=108.85 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~ 128 (414)
...+.+.... .+.+|||+|||+|.+++.+|+. +.+|+|+|+| ++++.|+++++.|+ + ++++++.+|++++. ..
T Consensus 203 ~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng-~-~~v~~~~~d~~~~~~~~~ 278 (369)
T 3bt7_A 203 LEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANH-I-DNVQIIRMAAEEFTQAMN 278 (369)
T ss_dssp HHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTT-C-CSEEEECCCSHHHHHHHS
T ss_pred HHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHHHHHh
Confidence 3444444432 3678999999999999999874 5689999999 58999999999987 5 57999999998752 11
Q ss_pred ---------------CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 129 ---------------EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 129 ---------------~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+||+|+.+++...+. ..+ .+.|+++|.++..+++
T Consensus 279 ~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-----~~~----~~~l~~~g~ivyvsc~ 328 (369)
T 3bt7_A 279 GVREFNRLQGIDLKSYQCETIFVDPPRSGLD-----SET----EKMVQAYPRILYISCN 328 (369)
T ss_dssp SCCCCTTGGGSCGGGCCEEEEEECCCTTCCC-----HHH----HHHHTTSSEEEEEESC
T ss_pred hccccccccccccccCCCCEEEECcCccccH-----HHH----HHHHhCCCEEEEEECC
Confidence 2799999998755322 222 3445677777654443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-10 Score=113.08 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--------------CCCeEEEEeChH-HHHHHHHHHHhCCCCCC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--------------GAKHVYAVEASE-MAEYARKLIAGNPSLGE 113 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--------------g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~ 113 (414)
....+.+.+.....++.+|||+|||+|.+...+++. ...+++|+|+++ +++.|+.++..++ +..
T Consensus 157 ~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~ 235 (445)
T 2okc_A 157 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGT 235 (445)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCS
T ss_pred HHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCc
Confidence 445556666666667789999999999999888764 124699999995 8899999888765 432
Q ss_pred -cEEEEEcccccccCCCceeEEEEcCCccccCChh--------------hHHHHHHHHHhccCCCeEEEcc
Q 015038 114 -RITVIKGKVEEVELPEKADILISEPMGTLLVNER--------------MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 -~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~e~--------------~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++.+.++|.......++||+|+++|+........ .-..++..+.++|||||++.+.
T Consensus 236 ~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 236 DRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp SCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEE
Confidence 6789999988766556899999999865432211 1136778888999999998543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=100.97 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+| .+++.+++++... ++++++++|+.+++.+.
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCccc
Confidence 44556666666678899999999999999999987 579999999 5999998886532 47999999999987653
Q ss_pred --ceeEEEEcCCcc
Q 015038 130 --KADILISEPMGT 141 (414)
Q Consensus 130 --~fDvIis~~~~~ 141 (414)
.| .|+++++.+
T Consensus 93 ~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 93 NQSY-KIFGNIPYN 105 (244)
T ss_dssp SCCC-EEEEECCGG
T ss_pred CCCe-EEEEeCCcc
Confidence 45 678887654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=104.88 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....++.+|||||||+|.++..+++.+ .+|+|||++ .+++.+++++... ++++++++|+.++++
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCc
Confidence 4455667777777788999999999999999999985 479999999 5999999988742 469999999998876
Q ss_pred C-CceeEEEEcCCccc
Q 015038 128 P-EKADILISEPMGTL 142 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~ 142 (414)
+ ..||+|+++++.+.
T Consensus 111 ~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 111 NKLDFNKVVANLPYQI 126 (295)
T ss_dssp GGSCCSEEEEECCGGG
T ss_pred ccCCccEEEEeCcccc
Confidence 5 36999999876543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.2e-09 Score=100.90 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=87.2
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC----Cce
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~f 131 (414)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.++ + .+++++.+|+.++... ++|
T Consensus 98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-V-SCCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGSCTTCGGGTTE
T ss_pred hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCChHhcCccccccCCC
Confidence 34567889999999999999999885 44689999999 58999999999876 4 4699999999887532 479
Q ss_pred eEEEEcCCccc--c--C--C--------hhh-------HHHHHHHHHhccCCCeEEEcccceeEEeeccch
Q 015038 132 DILISEPMGTL--L--V--N--------ERM-------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181 (414)
Q Consensus 132 DvIis~~~~~~--l--~--~--------e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~ 181 (414)
|.|+++++-+. . . + +.. ...++..+.++|+ ||+++.+.++++ +.+.+
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~--~~Ene 243 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC--QEENE 243 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC--GGGTH
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC--hHHhH
Confidence 99999876321 1 0 0 001 1246777778887 999987777744 44444
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=102.54 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....++ +|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++|+.++++
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCCh
Confidence 4455667777666778 999999999999999999975 79999999 599999887642 479999999999876
Q ss_pred C--CceeEEEEcCCccc
Q 015038 128 P--EKADILISEPMGTL 142 (414)
Q Consensus 128 ~--~~fDvIis~~~~~~ 142 (414)
+ ..+|.|++|++.+.
T Consensus 106 ~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 106 EEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GGSCTTEEEEEEECSSC
T ss_pred hhccCccEEEecCcccc
Confidence 5 36899999987654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-11 Score=111.84 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--C
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP--E 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~ 129 (414)
+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|++++. ..++++++++|+.+++.+ +
T Consensus 19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~----~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK----LNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT----TCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc----cCCceEEEECChhhcCcccCC
Confidence 345555555678899999999999999999987 589999999 58887776654 135799999999998765 5
Q ss_pred ceeEEEEcCCccccCChhhHHHHH--------------HHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYV--------------IARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l--------------~~~~r~LkpgG~lip 168 (414)
+| .|+++++.+.. ...+..++ +.+.|+|+|||.+.+
T Consensus 94 ~f-~vv~n~Py~~~--~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 94 RY-KIVGNIPYHLS--TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp EE-EEEEECCSSSC--HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred Cc-EEEEeCCcccc--HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 78 78888775432 12222222 446677777776543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=105.34 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++.+|||||||+|.++..+++. +..+++++|+..+++.|++ . .+++++.+|+.+ +.+. ||+|++..+.
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~-~~v~~~~~d~~~-~~p~-~D~v~~~~~l 256 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-------S-NNLTYVGGDMFT-SIPN-ADAVLLKYIL 256 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------B-TTEEEEECCTTT-CCCC-CSEEEEESCG
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-------C-CCcEEEeccccC-CCCC-ccEEEeehhh
Confidence 35679999999999999999987 3448999999547766543 1 249999999976 4554 9999998888
Q ss_pred cccCChhhHHHHHHHHHhccCC---CeEEEcccc
Q 015038 141 TLLVNERMLETYVIARDRFLVP---MGKMFPSVG 171 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~Lkp---gG~lip~~~ 171 (414)
|++.++ ....+++++.+.||| ||++++...
T Consensus 257 h~~~d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 257 HNWTDK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp GGSCHH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ccCCHH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 876543 245888999999999 999887643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=108.50 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=70.6
Q ss_pred CCCCEEEEECCC------ccHHHHHHHHc--CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC----
Q 015038 62 FIGRVVVDVGAG------SGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP---- 128 (414)
Q Consensus 62 ~~~~~VLDiGcG------tG~ls~~~a~~--g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~---- 128 (414)
.++.+||||||| +|..++.+++. +..+|+|||+|+ |. . ...+++++++|+.+++..
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~---~~~rI~fv~GDa~dlpf~~~l~ 283 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V---DELRIRTIQGDQNDAEFLDRIA 283 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G---CBTTEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h---cCCCcEEEEecccccchhhhhh
Confidence 457899999999 66666666654 345899999995 52 1 235799999999986543
Q ss_pred ---CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 ---EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ---~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++||+|+++.. ++ .......+.++.++|||||++++.
T Consensus 284 ~~d~sFDlVisdgs-H~---~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 284 RRYGPFDIVIDDGS-HI---NAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHCCEEEEEECSC-CC---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCccEEEECCc-cc---chhHHHHHHHHHHhcCCCeEEEEE
Confidence 68999999743 22 233677889999999999999865
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=101.47 Aligned_cols=86 Identities=12% Similarity=0.232 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP- 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~- 128 (414)
..+.|.+.....++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++.. ..+++++++|+.+++++
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~----~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ----QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT----CTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh----CCCcEEEEcchHhCCHHH
Confidence 44556666666788999999999999999999987 589999999 599999998764 24799999999988653
Q ss_pred ----CceeEEEEcCCccc
Q 015038 129 ----EKADILISEPMGTL 142 (414)
Q Consensus 129 ----~~fDvIis~~~~~~ 142 (414)
++|| |++|++.+.
T Consensus 92 ~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 92 VKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp SCCSSCEE-EEEECCHHH
T ss_pred hccCCCeE-EEecCCccc
Confidence 3688 888877543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=112.16 Aligned_cols=119 Identities=23% Similarity=0.173 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCC------------------------------------------
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGA------------------------------------------ 86 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~------------------------------------------ 86 (414)
+.+.+++.......++..|||.+||+|.+++.++..+.
T Consensus 176 e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~ 255 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEY 255 (703)
T ss_dssp HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccC
Confidence 45667777776666788999999999999998886521
Q ss_pred -CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--C-ceeEEEEcCCcc-ccCChhhHHHHHHHHHhc-
Q 015038 87 -KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP--E-KADILISEPMGT-LLVNERMLETYVIARDRF- 159 (414)
Q Consensus 87 -~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~-~fDvIis~~~~~-~l~~e~~l~~~l~~~~r~- 159 (414)
.+|+|+|++ .+++.|+.++..++ +.+.|++.++|+.++..+ . +||+||+||+.. -+..+..+..+...+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 256 SSHFYGSDSDARVIQRARTNARLAG-IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 369999999 59999999999987 888899999999987544 2 899999999853 333334455555544444
Q ss_pred --cCCCeEEEc
Q 015038 160 --LVPMGKMFP 168 (414)
Q Consensus 160 --LkpgG~lip 168 (414)
+.|||.+++
T Consensus 335 k~~~~g~~~~i 345 (703)
T 3v97_A 335 KNQFGGWNLSL 345 (703)
T ss_dssp HHHCTTCEEEE
T ss_pred HhhCCCCeEEE
Confidence 457887754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=104.34 Aligned_cols=98 Identities=14% Similarity=0.111 Sum_probs=77.8
Q ss_pred CCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT 141 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~ 141 (414)
+..+|||||||+|.++..+++.. ..+++++|++.+++.|++ . .+++++.+|+.+ +.+ .||+|++..+.|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~-~~v~~~~~d~~~-~~~-~~D~v~~~~vlh 262 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-------N-ENLNFVGGDMFK-SIP-SADAVLLKWVLH 262 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-------C-SSEEEEECCTTT-CCC-CCSEEEEESCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-------C-CCcEEEeCccCC-CCC-CceEEEEccccc
Confidence 45799999999999999999874 347999999767755543 1 349999999987 555 599999988887
Q ss_pred ccCChhhHHHHHHHHHhccCC---CeEEEcccc
Q 015038 142 LLVNERMLETYVIARDRFLVP---MGKMFPSVG 171 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~Lkp---gG~lip~~~ 171 (414)
++.++. ...+++++.+.|+| ||++++...
T Consensus 263 ~~~d~~-~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 263 DWNDEQ-SLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp GSCHHH-HHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CCCHHH-HHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 765433 45888999999999 999887543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-09 Score=98.84 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCCc------cHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEE-EEcccccccCCCce
Q 015038 60 ADFIGRVVVDVGAGS------GILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITV-IKGKVEEVELPEKA 131 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt------G~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~v-i~~d~~~~~~~~~f 131 (414)
...++.+|||+|||+ |. ...+...+ ..+|+|+|+|+. + .++++ +++|+.+...+++|
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-------v-------~~v~~~i~gD~~~~~~~~~f 124 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-------V-------SDADSTLIGDCATVHTANKW 124 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-------B-------CSSSEEEESCGGGCCCSSCE
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-------C-------CCCEEEEECccccCCccCcc
Confidence 445788999999954 66 33333445 358999999964 1 14778 99999987766889
Q ss_pred eEEEEcCCccc--------cCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTL--------LVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+|++.... ......++.+++.+.++|||||.+++.
T Consensus 125 D~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 125 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp EEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999854221 111233567889999999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=93.37 Aligned_cols=86 Identities=20% Similarity=0.166 Sum_probs=69.7
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCceeEE
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKADIL 134 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~fDvI 134 (414)
...++.+|||||||. +++|+| .|++.|+++.. .+++++.+|+++++. +++||+|
T Consensus 9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~------~~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG------NEGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT------TTSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc------cCcEEEEechhcCccccCCCCCEeEE
Confidence 345788999999996 238999 59999988743 248999999998865 3689999
Q ss_pred EEcCCcccc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++....+++ .+ +..+++++.|+|||||.+++.
T Consensus 68 ~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 68 LSGLVPGSTTLH---SAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp EECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEE
T ss_pred EECChhhhcccC---HHHHHHHHHHHCCCCEEEEEE
Confidence 998777776 44 478899999999999999883
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=96.39 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+.|.+.....++.+|||||||+|.++..+++.|+.+|+|+|+| .+++.++++ . ..+++++++|+.+++++
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~----~~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--G----DERLEVINEDASKFPFC 91 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--C----CTTEEEECSCTTTCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--c----CCCeEEEEcchhhCChh
Confidence 3445566776667888999999999999999999876789999999 588888776 2 24799999999998765
Q ss_pred Cc--eeEEEEcCCccc
Q 015038 129 EK--ADILISEPMGTL 142 (414)
Q Consensus 129 ~~--fDvIis~~~~~~ 142 (414)
+. ...|++|++.+.
T Consensus 92 ~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 92 SLGKELKVVGNLPYNV 107 (249)
T ss_dssp GSCSSEEEEEECCTTT
T ss_pred HccCCcEEEEECchhc
Confidence 31 237888877643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-09 Score=100.20 Aligned_cols=79 Identities=28% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH--------HHHHHHHHHHhCCCCCCcEEEEEccccccc--CC---
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE--------MAEYARKLIAGNPSLGERITVIKGKVEEVE--LP--- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~--------~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~--- 128 (414)
.++.+|||+|||+|.+++.+++.|. +|+|+|+|+ +++.|+++.+.++ +.++++++++|+.++. ++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEESCHHHHHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEECCHHHHHHhhhccC
Confidence 4567999999999999999999876 699999986 3355666665554 4557999999998852 23
Q ss_pred CceeEEEEcCCccc
Q 015038 129 EKADILISEPMGTL 142 (414)
Q Consensus 129 ~~fDvIis~~~~~~ 142 (414)
++||+|+++++...
T Consensus 160 ~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 160 GKPDIVYLDPMYPE 173 (258)
T ss_dssp CCCSEEEECCCC--
T ss_pred CCccEEEECCCCCC
Confidence 58999999988654
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=97.18 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCC---eEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK---HVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~---~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
...+.|.+.....++.+|||||||+|.++..+++.+.. +|+|+|+| .|++.++++. . .+++++++|+.++
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~----~~v~~i~~D~~~~ 102 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G----ELLELHAGDALTF 102 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G----GGEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C----CCcEEEECChhcC
Confidence 34455666666678899999999999999999987552 29999999 5999998883 1 4699999999998
Q ss_pred cCCCc-------eeEEEEcCCccc
Q 015038 126 ELPEK-------ADILISEPMGTL 142 (414)
Q Consensus 126 ~~~~~-------fDvIis~~~~~~ 142 (414)
++++. .+.||+|++.+.
T Consensus 103 ~~~~~~~~~~~~~~~vv~NlPY~i 126 (279)
T 3uzu_A 103 DFGSIARPGDEPSLRIIGNLPYNI 126 (279)
T ss_dssp CGGGGSCSSSSCCEEEEEECCHHH
T ss_pred ChhHhcccccCCceEEEEccCccc
Confidence 76532 357888877543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-09 Score=98.34 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=64.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCe--EEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKH--VYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~--V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
..+.|.+.+...++.+|||||||+|.++. +++ + .+ |+|+|++ .|++.+++++... ++++++++|+.++++
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH
Confidence 44556666666678899999999999999 765 3 35 9999999 5989888765431 479999999998765
Q ss_pred CC------ceeEEEEcCCcc
Q 015038 128 PE------KADILISEPMGT 141 (414)
Q Consensus 128 ~~------~fDvIis~~~~~ 141 (414)
++ ..|.|++|++.+
T Consensus 82 ~~~~~~~~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 82 GELAEKMGQPLRVFGNLPYN 101 (252)
T ss_dssp HHHHHHHTSCEEEEEECCTT
T ss_pred HHhhcccCCceEEEECCCCC
Confidence 43 347999998754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=86.03 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCC--CCcEEEEEcccccc--------------
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSL--GERITVIKGKVEEV-------------- 125 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l--~~~i~vi~~d~~~~-------------- 125 (414)
+.++|||+||| .-++.+|+....+|++||.+ +.++.|+++++.++ + .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANP-PAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 67777777534689999999 58999999999987 7 78999999996542
Q ss_pred ---------cCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ---------ELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ---------~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
..+ ++||+|+.+.- . ....+..+.+.|+|||+++++.
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k-~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------F-RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------S-HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------C-chhHHHHHHHhcCCCeEEEEeC
Confidence 122 67999998642 1 1233444558999999998764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=101.93 Aligned_cols=75 Identities=24% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC--CCCCCcEEEEEcccccc-cC--CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN--PSLGERITVIKGKVEEV-EL--PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n--~~l~~~i~vi~~d~~~~-~~--~~~fDvIis 136 (414)
++.+|||+|||+|..++.+++.+. +|+|||+| .+++.|++++..+ + + ++++++++|+.++ .. .++||+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 378999999999999999998765 79999999 5999999999876 5 4 6899999999885 22 258999999
Q ss_pred cCCc
Q 015038 137 EPMG 140 (414)
Q Consensus 137 ~~~~ 140 (414)
+|+.
T Consensus 170 DPPr 173 (410)
T 3ll7_A 170 DPAR 173 (410)
T ss_dssp CCEE
T ss_pred CCCC
Confidence 9873
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=102.00 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=86.6
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C---------------CCeEEEEeChH-HHHHHHHHHHhC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G---------------AKHVYAVEASE-MAEYARKLIAGN 108 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g---------------~~~V~gvD~s~-~~~~a~~~~~~n 108 (414)
....+.|.+.+...++.+|||.|||+|.+.+.+++. + ..+++|+|+++ ++..|+.++..+
T Consensus 155 ~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 155 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence 334455666666667789999999999998888764 1 13699999995 889999988776
Q ss_pred CCCCC----cEEEEEcccccccC--CCceeEEEEcCCccccCC-----------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 109 PSLGE----RITVIKGKVEEVEL--PEKADILISEPMGTLLVN-----------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 109 ~~l~~----~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l~~-----------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ ... ++.+.++|...... .++||+|++||+...... ...-..++..+.+.|||||++.+.
T Consensus 235 g-i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V 311 (541)
T 2ar0_A 235 D-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 311 (541)
T ss_dssp T-CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 5 443 27889999866432 368999999998654322 111235778888999999988543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-08 Score=94.68 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=66.5
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CC--
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LP-- 128 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~-- 128 (414)
+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|.| .+++.|++++..++ ++++++++|+.++. ++
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHT
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhc
Confidence 3344455678899999999999999999873 4689999999 59999999987754 58999999998864 11
Q ss_pred --CceeEEEEcCC
Q 015038 129 --EKADILISEPM 139 (414)
Q Consensus 129 --~~fDvIis~~~ 139 (414)
.+||.|++++.
T Consensus 95 g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 95 GIEKVDGILMDLG 107 (301)
T ss_dssp TCSCEEEEEEECS
T ss_pred CCCCCCEEEEcCc
Confidence 47999999764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-08 Score=91.74 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=64.9
Q ss_pred HHHHhcCCCCC--CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHH---hCCCC----CCcEEEEEcccc
Q 015038 54 AVIENRADFIG--RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIA---GNPSL----GERITVIKGKVE 123 (414)
Q Consensus 54 ai~~~~~~~~~--~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~---~n~~l----~~~i~vi~~d~~ 123 (414)
.+.+.+...++ .+|||+|||+|..++.+++.|+ +|++||.++ ++..++++++ .|..+ ..+++++++|+.
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~ 155 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence 34444444456 8999999999999999999887 599999995 6666655543 22111 147999999998
Q ss_pred ccc--CCCceeEEEEcCCccc
Q 015038 124 EVE--LPEKADILISEPMGTL 142 (414)
Q Consensus 124 ~~~--~~~~fDvIis~~~~~~ 142 (414)
++- .+++||+|+++|+...
T Consensus 156 ~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 156 TALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHhCcccCCEEEEcCCCCC
Confidence 752 3457999999998754
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=89.86 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=85.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHh--CCC-CCCcEEEEEcccccccC--CCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAG--NPS-LGERITVIKGKVEEVEL--PEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~--n~~-l~~~i~vi~~d~~~~~~--~~~fDvI 134 (414)
...++||-||.|.|..+..+++. +..+|+.||+++ +++.|++.+.. .+. -..|++++.+|...+-. .++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45789999999999999999987 567999999995 77999887643 111 24689999999988732 3689999
Q ss_pred EEcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 135 ISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 135 is~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
|.+........+. .-..+++.+++.|+|||+++....+.+.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~ 203 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL 203 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSS
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCccc
Confidence 9976543222111 1246778899999999999877665443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.4e-07 Score=93.64 Aligned_cols=117 Identities=16% Similarity=0.057 Sum_probs=84.3
Q ss_pred HHHHHHHhcC----CCCCCEEEEECCCccHHHHHHHHc----CCCeEEEEeChH-HHHHHHHHHHhCCCCC-CcEEEEEc
Q 015038 51 YYAAVIENRA----DFIGRVVVDVGAGSGILSLFAAQA----GAKHVYAVEASE-MAEYARKLIAGNPSLG-ERITVIKG 120 (414)
Q Consensus 51 ~~~ai~~~~~----~~~~~~VLDiGcGtG~ls~~~a~~----g~~~V~gvD~s~-~~~~a~~~~~~n~~l~-~~i~vi~~ 120 (414)
..+.|.+.+. ..++.+|||.+||||.+.+.+++. +..+++|+|+++ ++..|+.++..++ .. .++.+.++
T Consensus 205 Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I~~g 283 (542)
T 3lkd_A 205 VAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEES
T ss_pred HHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccceEec
Confidence 3444444443 346779999999999998888775 345899999995 8899999888776 54 57899999
Q ss_pred ccccc--c--CCCceeEEEEcCCccccCC--h-----------------h-hHHHHHHHHHhccC-CCeEEEc
Q 015038 121 KVEEV--E--LPEKADILISEPMGTLLVN--E-----------------R-MLETYVIARDRFLV-PMGKMFP 168 (414)
Q Consensus 121 d~~~~--~--~~~~fDvIis~~~~~~l~~--e-----------------~-~l~~~l~~~~r~Lk-pgG~lip 168 (414)
|.... + ...+||+|++|||...-.. + . .--.++..+.+.|+ |||++.+
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 98765 2 2368999999998542110 0 0 01236788889999 9998743
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=97.55 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--------C--------CCeEEEEeChH-HHHHHHHHHHhCCCC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--------G--------AKHVYAVEASE-MAEYARKLIAGNPSL 111 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--------g--------~~~V~gvD~s~-~~~~a~~~~~~n~~l 111 (414)
....+.|.+.+...++ +|||.+||||.+.+.+++. + ..+++|+|+++ ++..|+.++..++ +
T Consensus 231 ~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i 308 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-I 308 (544)
T ss_dssp HHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-C
Confidence 4455566666554444 9999999999988777542 1 24799999995 8899999988776 6
Q ss_pred CCcEEEEEcccccccC--CCceeEEEEcCCcccc-------------------------CChh-hHHHHHHHHHhccCCC
Q 015038 112 GERITVIKGKVEEVEL--PEKADILISEPMGTLL-------------------------VNER-MLETYVIARDRFLVPM 163 (414)
Q Consensus 112 ~~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l-------------------------~~e~-~l~~~l~~~~r~Lkpg 163 (414)
..++.+.++|....+. ..+||+||+||+...- .... .--.++..+.+.|+||
T Consensus 309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 388 (544)
T 3khk_A 309 DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT 388 (544)
T ss_dssp CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEE
T ss_pred CcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccC
Confidence 6566568888765432 3689999999986531 1100 1125778888999999
Q ss_pred eEEEc
Q 015038 164 GKMFP 168 (414)
Q Consensus 164 G~lip 168 (414)
|++.+
T Consensus 389 Gr~ai 393 (544)
T 3khk_A 389 GSMAL 393 (544)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98743
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-06 Score=92.75 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcC----CCeEEEEeChH-HHHHH--HHHHHhCCCCCC---cEEEEEccccccc--CCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAG----AKHVYAVEASE-MAEYA--RKLIAGNPSLGE---RITVIKGKVEEVE--LPEK 130 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g----~~~V~gvD~s~-~~~~a--~~~~~~n~~l~~---~i~vi~~d~~~~~--~~~~ 130 (414)
++.+|||.|||+|.+.+.+++.. ..+++|+|+++ ++..| +.++..|. +.. ...+...|+.... ...+
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~-LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ-LVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT-TCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh-hhcCCCcceEEecchhcccccccCC
Confidence 57799999999999999988763 24799999995 77888 55544432 211 2355566666532 2368
Q ss_pred eeEEEEcCCccccC-Ch-------------------------hhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMGTLLV-NE-------------------------RMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~-~e-------------------------~~l~~~l~~~~r~LkpgG~lip 168 (414)
||+||+||+..... .. .....++..+.++|+|||++.+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf 463 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA 463 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence 99999999863211 11 1123467778899999999854
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-07 Score=85.34 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=69.3
Q ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 55 VIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
+.+.....++.+|||||||+|.++..+++. ++.+|+|+|+. .+...... ... ...++..+.+++....++ ++|
T Consensus 66 i~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~-~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 66 FHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQS-LGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCB-TTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCc-CCCCeEEEeccceehhcCCCCc
Confidence 333344456779999999999999998875 67789999987 33100000 000 112455566665433443 689
Q ss_pred eEEEEcCCcc---ccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 132 DILISEPMGT---LLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~---~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
|+|+|+...+ ...+......+++.+.++|+|| |.+++-
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 9999986443 1111111123478889999999 999763
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-06 Score=84.06 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=90.5
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeChH-HHHHHHHHHHhCCC----CCCcEEEEEccccccc--CCC
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASE-MAEYARKLIAGNPS----LGERITVIKGKVEEVE--LPE 129 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~-~~~~a~~~~~~n~~----l~~~i~vi~~d~~~~~--~~~ 129 (414)
.+...+|.+|||++||.|.=+..++..+. ..|+|+|+++ -+...++++...+. ...++.+...|...+. .++
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 34567889999999999999999888754 3799999994 66777777765431 2357999999988764 347
Q ss_pred ceeEEEEcCCccc----cC--C--------hhh-------HHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 130 KADILISEPMGTL----LV--N--------ERM-------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 130 ~fDvIis~~~~~~----l~--~--------e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
+||.|+.+.+-+. .. + ... -..+|..+.++|||||+++-++|++ .|.+.+..
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl--~~~ENE~v 295 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL--SHLQNEYV 295 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC--CTTTTHHH
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC--chhhCHHH
Confidence 8999999877332 11 0 011 1367788889999999999888884 46666554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=86.74 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=86.4
Q ss_pred HHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC--CC----CCcEEEEEcc
Q 015038 50 TYYAAVIENR-ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP--SL----GERITVIKGK 121 (414)
Q Consensus 50 ~~~~ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~--~l----~~~i~vi~~d 121 (414)
.|.+.+.... ...++++||-||.|.|..+..+++.+.++|+.||+++ +++.|++.+.... .+ .++++++.+|
T Consensus 191 ~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~D 270 (381)
T 3c6k_A 191 AYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIED 270 (381)
T ss_dssp HHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESC
T ss_pred HHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHH
Confidence 4555554332 1235689999999999999999998778999999995 7799988753210 01 2469999999
Q ss_pred ccccc-----CCCceeEEEEcCCcccc------CCh-hhHHHHHHHHHhccCCCeEEEcccce
Q 015038 122 VEEVE-----LPEKADILISEPMGTLL------VNE-RMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 122 ~~~~~-----~~~~fDvIis~~~~~~l------~~e-~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
..++- ..++||+||.+...... ... ..-..+++.+++.|+|||+++.....
T Consensus 271 a~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s 333 (381)
T 3c6k_A 271 CIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 333 (381)
T ss_dssp HHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred HHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 87652 23579999998543211 111 11356788899999999999866544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=82.28 Aligned_cols=106 Identities=23% Similarity=0.217 Sum_probs=70.8
Q ss_pred CCCEEEEECCCccHHHHHHHHc-------CC------CeEEEEeChH----HH-----------HHHHHHHHhCCC----
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-------GA------KHVYAVEASE----MA-----------EYARKLIAGNPS---- 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-------g~------~~V~gvD~s~----~~-----------~~a~~~~~~n~~---- 110 (414)
++.+|||+|+|+|..++.++++ +. .+++++|..+ ++ ..|++++...+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988776543 22 3899999853 22 356666554110
Q ss_pred -----C---CCcEEEEEcccccc-c-CCC----ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 111 -----L---GERITVIKGKVEEV-E-LPE----KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 111 -----l---~~~i~vi~~d~~~~-~-~~~----~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+ ..+++++.+|+.+. + .++ .||+|+.+.+......+-.-..++..+.+.|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1 14688999999874 2 223 799999876432211111135678899999999999874
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=75.57 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=81.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C--CCeEEEEeChH---------------------------HHH
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G--AKHVYAVEASE---------------------------MAE 99 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g--~~~V~gvD~s~---------------------------~~~ 99 (414)
..+........++.|||+|+..|..++.++.. | ..+|+++|..+ ..+
T Consensus 96 ~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~ 175 (282)
T 2wk1_A 96 QCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEE 175 (282)
T ss_dssp HHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHH
T ss_pred HHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHH
Confidence 33333333345779999999999988887654 1 45799999521 356
Q ss_pred HHHHHHHhCCCC-CCcEEEEEccccccc--C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 100 YARKLIAGNPSL-GERITVIKGKVEEVE--L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 100 ~a~~~~~~n~~l-~~~i~vi~~d~~~~~--~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.+++++++.+ + .++|+++.|++.+.- . .++||+|+.+.- . .+ .....++.+.+.|+|||+++++..
T Consensus 176 ~ar~n~~~~g-l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~-~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 176 EVRRNFRNYD-LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YE-STWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HHHHHHHHTT-CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HH-HHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HHHHHHHHcC-CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cc-cHHHHHHHHHhhcCCCEEEEEcCC
Confidence 7889998887 6 489999999997742 2 268999998642 1 11 134567888999999999999875
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-05 Score=77.59 Aligned_cols=108 Identities=18% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCEEEEECCCccHHHHHHHHc------------C----CCeEEEEeCh-H-HHHHHHHHHHhCC---------CCCCcEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQA------------G----AKHVYAVEAS-E-MAEYARKLIAGNP---------SLGERIT 116 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~------------g----~~~V~gvD~s-~-~~~~a~~~~~~n~---------~l~~~i~ 116 (414)
..+|+|+|||+|..++.++.. | .-+|+..|+. . .-...+....... ....+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999998887321 1 1278888875 2 2222222111000 0000112
Q ss_pred EEEccccc---ccC-CCceeEEEEcCCccccCCh-----------------------------------hhHHHHHHHHH
Q 015038 117 VIKGKVEE---VEL-PEKADILISEPMGTLLVNE-----------------------------------RMLETYVIARD 157 (414)
Q Consensus 117 vi~~d~~~---~~~-~~~fDvIis~~~~~~l~~e-----------------------------------~~l~~~l~~~~ 157 (414)
++.+.... -.+ ++++|+|+|+...|++... .++..+|+.+.
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 223 3789999999888887521 14567899999
Q ss_pred hccCCCeEEEcccc
Q 015038 158 RFLVPMGKMFPSVG 171 (414)
Q Consensus 158 r~LkpgG~lip~~~ 171 (414)
+.|+|||+|+++..
T Consensus 213 ~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 213 AEVKRGGAMFLVCL 226 (374)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 99999999987643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-06 Score=81.62 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCc
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEK 130 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~ 130 (414)
.|.+.....++.+|||||||.|.++..+++ .++..|+|+|+. .+...+... .. ...++..+..++.-..+ +++
T Consensus 81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~-~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TT-LGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CB-TTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---cc-CCCceEEeeCCcchhhcCCCC
Confidence 344444455677999999999999999885 477789999997 332111100 00 12234444433322223 378
Q ss_pred eeEEEEcCCccccC---ChhhHHHHHHHHHhccCCC--eEEEc
Q 015038 131 ADILISEPMGTLLV---NERMLETYVIARDRFLVPM--GKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~---~e~~l~~~l~~~~r~Lkpg--G~lip 168 (414)
+|+|+|+....... ++.....++.-+.++|+|| |.++.
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 99999986544111 1111123577788999999 99875
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.4e-05 Score=76.84 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
..+|.+|||+||++|.++..+++.|. +|+|||..+|.... ... .+|+++.+|...+.++ .++|+|+|+..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l----~~~----~~V~~~~~d~~~~~~~~~~~D~vvsDm~ 279 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSL----MDT----GQVTWLREDGFKFRPTRSNISWMVCDMV 279 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHH----HTT----TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhh----ccC----CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence 35789999999999999999999987 79999987654322 222 4699999999988765 57999999754
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.1e-05 Score=69.04 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEc-ccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG-KVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~~~~~ 130 (414)
..|.+.....++.+|||+||++|.++..++.. |+++|+|+|+-.+-..--..+...+ + +.|++..+ |+..++. .+
T Consensus 68 ~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~g-w-n~v~fk~gvDv~~~~~-~~ 144 (267)
T 3p8z_A 68 QWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYG-W-NIVKLMSGKDVFYLPP-EK 144 (267)
T ss_dssp HHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTT-T-TSEEEECSCCGGGCCC-CC
T ss_pred HHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcC-c-CceEEEeccceeecCC-cc
Confidence 33444445567789999999999999977765 8889999999631100000001111 2 45999999 9876654 78
Q ss_pred eeEEEEcCCccccCCh----hhHHHHHHHHHhccCCCeEEE
Q 015038 131 ADILISEPMGTLLVNE----RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 131 fDvIis~~~~~~l~~e----~~l~~~l~~~~r~LkpgG~li 167 (414)
+|+|+|+.--+.-..+ +.+ .+|+-+.++|++ |.++
T Consensus 145 ~DtllcDIgeSs~~~~vE~~Rtl-rvLela~~wL~~-~~fc 183 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTI-RVLKMVEPWLKN-NQFC 183 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHH-HHHHHHGGGCSS-CEEE
T ss_pred ccEEEEecCCCCCChhhhhhHHH-HHHHHHHHhccc-CCEE
Confidence 9999997543221111 112 266777899998 5554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-05 Score=71.58 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=70.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHH-HHHHHHHHHhCCCCCCcEEEEEc-ccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEM-AEYARKLIAGNPSLGERITVIKG-KVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~-~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~~~~ 129 (414)
..|.+.....++.+||||||++|.++..++.. |+++|+|+|+-.. .+.- ..+...+ + .-|.++.+ |+..++. .
T Consensus 84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~-w-~lV~~~~~~Dv~~l~~-~ 159 (321)
T 3lkz_A 84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYG-W-NIVTMKSGVDVFYRPS-E 159 (321)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTT-G-GGEEEECSCCTTSSCC-C
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcC-C-cceEEEeccCHhhCCC-C
Confidence 33444455567789999999999999977665 8889999999631 0000 0000110 1 23788887 8877654 6
Q ss_pred ceeEEEEcCCccccCCh----hhHHHHHHHHHhccCCC-eEEEc
Q 015038 130 KADILISEPMGTLLVNE----RMLETYVIARDRFLVPM-GKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e----~~l~~~l~~~~r~Lkpg-G~lip 168 (414)
++|+|+|+.-.+.-..+ ..+ .+|+-+.++|++| |.+++
T Consensus 160 ~~D~ivcDigeSs~~~~ve~~Rtl-~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIGESSSSAEVEEHRTI-RVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHH-HHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECccCCCChhhhhhHHH-HHHHHHHHHhccCCCcEEE
Confidence 79999998652222111 112 2567778999998 76653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.1e-05 Score=72.48 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----- 127 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----- 127 (414)
.+.+.+...++..+||.+||.|..+..+++.+ .+|+|+|.++ +++.|++ +.. ++++++++++.++..
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHHHT
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHHHc
Confidence 34455555678899999999999999999984 4899999995 7788887 532 479999999988741
Q ss_pred C-CceeEEEEcCC
Q 015038 128 P-EKADILISEPM 139 (414)
Q Consensus 128 ~-~~fDvIis~~~ 139 (414)
. +++|.|++++.
T Consensus 86 g~~~vDgIL~DLG 98 (285)
T 1wg8_A 86 GVERVDGILADLG 98 (285)
T ss_dssp TCSCEEEEEEECS
T ss_pred CCCCcCEEEeCCc
Confidence 1 57999998754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.6e-05 Score=72.44 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCC----eEEEEeC--hHHHHHHHHHHHhCCCCCCcEEEEEc-cccc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAK----HVYAVEA--SEMAEYARKLIAGNPSLGERITVIKG-KVEE 124 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~----~V~gvD~--s~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~ 124 (414)
..|.+..-..++.+|||+||+.|.++..+++. +.. .|+|+|. .++... ..+ + +-+.++.+ |+.+
T Consensus 63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~------~~G-v-~~i~~~~G~Df~~ 134 (269)
T 2px2_A 63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ------SYG-W-NIVTMKSGVDVFY 134 (269)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC------STT-G-GGEEEECSCCGGG
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc------CCC-c-eEEEeeccCCccC
Confidence 34444444456889999999999999999986 222 3445552 121000 000 0 12455557 9987
Q ss_pred ccCCCceeEEEEcCCccc---cCC-hhhHHHHHHHHHhccCCCe-EEEc
Q 015038 125 VELPEKADILISEPMGTL---LVN-ERMLETYVIARDRFLVPMG-KMFP 168 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~---l~~-e~~l~~~l~~~~r~LkpgG-~lip 168 (414)
+. +.++|+|+|+..-.. ..+ ...+. .++-+.++|+||| .++.
T Consensus 135 ~~-~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 135 KP-SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp SC-CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred CC-CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEE
Confidence 54 358999999864321 111 12223 5667778999999 7754
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.3e-05 Score=74.39 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeEEEEc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADILISE 137 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDvIis~ 137 (414)
..++++||||||++|.++..+++. ++..|+|+|+.. +...... . . ....++.....++.-..+ ++++|+|+|+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~-~--~~~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M-Q--TLGWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C-C--BTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c-c--ccCCceEEeecCceeeecCCCCcCEEeec
Confidence 456789999999999999999975 777899999963 2100000 0 0 012233333333222222 3689999998
Q ss_pred CCccccC---ChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 138 PMGTLLV---NERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 138 ~~~~~l~---~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..-.... ++.....++.-+.++|+|| |.|+.-
T Consensus 155 ~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 155 IGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 6544111 1111134477788999999 998753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00023 Score=73.67 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C----------CCeEEEEeChH-HHHHHHHHHHhCCCCCC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G----------AKHVYAVEASE-MAEYARKLIAGNPSLGE 113 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g----------~~~V~gvD~s~-~~~~a~~~~~~n~~l~~ 113 (414)
....+.|.+.+...++.+|+|-+||||.+...+.+. + ...++|+|+++ +...|+-++.-++ . +
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg-~-~ 280 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG-L-E 280 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT-C-S
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC-C-c
Confidence 455667777777777889999999999998777653 1 13699999995 7788887776554 3 2
Q ss_pred cEEEEEcccccccC-----CCceeEEEEcCCcc
Q 015038 114 RITVIKGKVEEVEL-----PEKADILISEPMGT 141 (414)
Q Consensus 114 ~i~vi~~d~~~~~~-----~~~fDvIis~~~~~ 141 (414)
...+..+|....+. ..+||+|++||+..
T Consensus 281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~ 313 (530)
T 3ufb_A 281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFG 313 (530)
T ss_dssp CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSS
T ss_pred cccccccccccCchhhhcccccceEEEecCCCC
Confidence 34567777654322 24799999999964
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00012 Score=62.34 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCcc-HHHHHHHH-cCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCC--
Q 015038 53 AAVIENRADFIGRVVVDVGAGSG-ILSLFAAQ-AGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP-- 128 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG-~ls~~~a~-~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-- 128 (414)
..|.+.. ..+.+|||||||+| ..+..+++ .|. .|+|+|+++.+ +.++..|+.+..+.
T Consensus 27 eYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~A----------------v~~v~dDiF~P~~~~Y 87 (153)
T 2k4m_A 27 VYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSH----------------GGIVRDDITSPRMEIY 87 (153)
T ss_dssp HHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSS----------------TTEECCCSSSCCHHHH
T ss_pred HHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccc----------------cceEEccCCCCccccc
Confidence 3444444 34579999999999 59999997 787 59999998521 11888888775443
Q ss_pred CceeEEEE
Q 015038 129 EKADILIS 136 (414)
Q Consensus 129 ~~fDvIis 136 (414)
+.||+|.+
T Consensus 88 ~~~DLIYs 95 (153)
T 2k4m_A 88 RGAALIYS 95 (153)
T ss_dssp TTEEEEEE
T ss_pred CCcCEEEE
Confidence 58999975
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=72.56 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=66.5
Q ss_pred CCEEEEECCCccHHHHHHHHc------------------CCCeEEEEeCh--HH---HHHH---HHHH-HhCCCCCCcEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQA------------------GAKHVYAVEAS--EM---AEYA---RKLI-AGNPSLGERIT 116 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~------------------g~~~V~gvD~s--~~---~~~a---~~~~-~~n~~l~~~i~ 116 (414)
..+|+|+||++|..++.+... ..-+|+..|+. +. .... .+.+ +.++ ...+..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-RKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-CCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-CCCCce
Confidence 468999999999998887654 11268888874 22 1111 1111 1222 112345
Q ss_pred EEEcccccc---cCC-CceeEEEEcCCccccCChh------------------------------------hHHHHHHHH
Q 015038 117 VIKGKVEEV---ELP-EKADILISEPMGTLLVNER------------------------------------MLETYVIAR 156 (414)
Q Consensus 117 vi~~d~~~~---~~~-~~fDvIis~~~~~~l~~e~------------------------------------~l~~~l~~~ 156 (414)
++.+....+ .+| +++|+|+|+...|++.... ++..+|+.+
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655443 233 7899999998888764321 123458888
Q ss_pred HhccCCCeEEEccc
Q 015038 157 DRFLVPMGKMFPSV 170 (414)
Q Consensus 157 ~r~LkpgG~lip~~ 170 (414)
.+.|+|||+|++..
T Consensus 212 a~eL~pGG~mvl~~ 225 (384)
T 2efj_A 212 SEELISRGRMLLTF 225 (384)
T ss_dssp HHHEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEE
Confidence 99999999998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00019 Score=68.69 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN 108 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n 108 (414)
.+.+.+++... .++..|||++||+|.+++.+++.|. +++|+|++ .+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 34444555444 5788999999999999999999886 79999999 5889999988753
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00039 Score=65.66 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=62.9
Q ss_pred CCCCCEEEEECCC------ccHHHHHHHHcCCC--eEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCcee
Q 015038 61 DFIGRVVVDVGAG------SGILSLFAAQAGAK--HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKAD 132 (414)
Q Consensus 61 ~~~~~~VLDiGcG------tG~ls~~~a~~g~~--~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fD 132 (414)
...+.+|||+||| .|. ..+.+.+.. .|+++|+.++.. ..+ .++++|+.++...++||
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~~~k~D 171 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHTANKWD 171 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEESSCEE
T ss_pred ecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccccccCCCCC
Confidence 3457899999983 344 333344433 899999987421 112 45999988877678999
Q ss_pred EEEEcCC----ccccCC-----hhhHHHHHHHHHhccCCCeEEEc
Q 015038 133 ILISEPM----GTLLVN-----ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 133 vIis~~~----~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+|+.. ++ ... ....+.+++-+.+.|+|||.|+.
T Consensus 172 LVISDMAPNtTG~-~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 172 LIISDMYDPRTKH-VTKENDSKEGFFTYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp EEEECCCCTTSCS-SCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCCCCcCCc-cccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 9999743 22 111 22467778888899999999874
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00019 Score=70.49 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=67.7
Q ss_pred CEEEEECCCccHHHHHHHHc------------CC-----CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-
Q 015038 65 RVVVDVGAGSGILSLFAAQA------------GA-----KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV- 125 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~------------g~-----~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~- 125 (414)
-+|+|+||++|..++.+... +. -+|+..|+. .....+-+.+.... ...+..++.+....+
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCSS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchhhh
Confidence 47999999999887665432 21 278999986 34444333332210 001234555544332
Q ss_pred --cCC-CceeEEEEcCCccccCC------------------------------hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 --ELP-EKADILISEPMGTLLVN------------------------------ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 --~~~-~~fDvIis~~~~~~l~~------------------------------e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+| +++|+|+|+...|++.. +.++..+|+.+.+.|+|||++++..
T Consensus 132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 333 78999999887777543 1235677999999999999998764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=70.81 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=48.1
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
++..|||||.|.|.++..+++. .+++|++||++ .++...++.. . .++++++++|+.++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~----~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E----GSPLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T----TSSCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c----CCCEEEEECCccchh
Confidence 3589999999999999999986 45689999999 4777777665 2 257999999997764
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00016 Score=68.49 Aligned_cols=107 Identities=13% Similarity=0.092 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc---
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--- 125 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--- 125 (414)
.|.+.+.. +.+..+||+-+|||.+++.+.+ +..+++.+|.++ .++..++++.. .+++++++.|....
T Consensus 82 ~yf~~l~~----~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 82 EYISVIKQ----INLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HHHHHHHH----HSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHH
T ss_pred HHHHHHHH----hcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHH
Confidence 45555555 2456799999999999999998 558999999995 55666665543 36799999997553
Q ss_pred --cCCCceeEEEEcCCccccCChhhHHHHHHHHHh--ccCCCeEEEc
Q 015038 126 --ELPEKADILISEPMGTLLVNERMLETYVIARDR--FLVPMGKMFP 168 (414)
Q Consensus 126 --~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r--~LkpgG~lip 168 (414)
+.+++||+|+.+|+...- ...+.++..+.+ .+.|+|++++
T Consensus 153 l~~~~~~fdLVfiDPPYe~k---~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPSYERK---EEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HCSCTTSCEEEEECCCCCST---THHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hcCCCCCccEEEECCCCCCC---cHHHHHHHHHHHhCccCCCeEEEE
Confidence 223579999999986531 123334333332 4678998853
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0019 Score=60.35 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP 109 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~ 109 (414)
+.+.+++... .++..|||.+||+|..+..+.+.|. +++|+|+++ .++.|++++..++
T Consensus 201 l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence 3444444443 5788999999999999999999876 799999995 8899999988754
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=63.81 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=53.6
Q ss_pred CEEEEECCCccHHHHHHHHcC--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEEEc
Q 015038 65 RVVVDVGAGSGILSLFAAQAG--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILISE 137 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIis~ 137 (414)
.+|||+.||.|.+++.+.++| ++.|+++|+++ .++..+.+.. ...++.+|+.++... ..+|+|+..
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 579999999999999999998 56899999996 5566666532 234778999887422 269999998
Q ss_pred CC
Q 015038 138 PM 139 (414)
Q Consensus 138 ~~ 139 (414)
++
T Consensus 76 pP 77 (343)
T 1g55_A 76 PP 77 (343)
T ss_dssp CC
T ss_pred CC
Confidence 87
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.004 Score=60.25 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL- 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~- 127 (414)
.+.+.+.+...++.+++|..||.|..+..+++. | ..+|+|+|.++ +++.|+ ++ ..+++++++++..++..
T Consensus 46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~~l~~~ 119 (347)
T 3tka_A 46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFSALGEY 119 (347)
T ss_dssp THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGGGHHHH
T ss_pred HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHHHHHHH
Confidence 345556666778999999999999999999986 3 45899999995 667664 22 23689999999988631
Q ss_pred ------CCceeEEEEcCC
Q 015038 128 ------PEKADILISEPM 139 (414)
Q Consensus 128 ------~~~fDvIis~~~ 139 (414)
.+++|.|+.++-
T Consensus 120 L~~~g~~~~vDgILfDLG 137 (347)
T 3tka_A 120 VAERDLIGKIDGILLDLG 137 (347)
T ss_dssp HHHTTCTTCEEEEEEECS
T ss_pred HHhcCCCCcccEEEECCc
Confidence 136999998753
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0024 Score=63.21 Aligned_cols=68 Identities=28% Similarity=0.213 Sum_probs=54.0
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------CCceeEE
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL---------PEKADIL 134 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------~~~fDvI 134 (414)
.+|+|+.||.|.+++.+.++|...|.++|+++ .++..+.+. ....++++|+.++.. ...+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 47999999999999999999998899999996 445445442 135788899988732 3579999
Q ss_pred EEcCC
Q 015038 135 ISEPM 139 (414)
Q Consensus 135 is~~~ 139 (414)
+..++
T Consensus 76 ~ggpP 80 (376)
T 3g7u_A 76 IGGPP 80 (376)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99887
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0091 Score=58.01 Aligned_cols=121 Identities=19% Similarity=0.146 Sum_probs=82.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCC-------------
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPS------------- 110 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~------------- 110 (414)
+.|+..+...+.+.+...+...|+.+|||.......+... +..+++-||..++++.-++.+...+.
T Consensus 79 ~~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~ 158 (334)
T 1rjd_A 79 YLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTA 158 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhccccccccc
Confidence 3566666555555443335679999999999998888764 32356666665566666666655410
Q ss_pred ------CCCcEEEEEccccccc----------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 111 ------LGERITVIKGKVEEVE----------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 111 ------l~~~i~vi~~d~~~~~----------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..++..++.+|+.+.. .+....+++++.+..++.. .....+++.+.+.. |+|.++
T Consensus 159 ~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~-~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 159 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN-NESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-HHHHHHHHHHHHHC-SSEEEE
T ss_pred ccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH-HHHHHHHHHHHhhC-CCcEEE
Confidence 1367999999998731 1246789999998888764 44778888887766 677664
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0054 Score=59.44 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=53.2
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcCC
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEPM 139 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~ 139 (414)
.+.+|+|+.||.|.+++.+.++|++.|.++|+++ .++..+.+... . . .+|+.++... ..+|+|+..++
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~---~---~---~~Di~~~~~~~~~~~D~l~~gpP 80 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---K---P---EGDITQVNEKTIPDHDILCAGFP 80 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---C---C---BSCGGGSCGGGSCCCSEEEEECC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC---C---C---cCCHHHcCHhhCCCCCEEEECCC
Confidence 4579999999999999999999999999999996 55666666532 1 1 6888876432 36999998876
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.022 Score=54.77 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=52.4
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcCC
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEPM 139 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~ 139 (414)
.+|||+-||.|.+++-+.++|..-|.++|+++ .++.-+.+ .. -+++.+|+.++... .++|+++..++
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N------~~--~~~~~~DI~~i~~~~~~~~D~l~ggpP 70 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN------HS--AKLIKGDISKISSDEFPKCDGIIGGPP 70 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHH------CC--SEEEESCGGGCCGGGSCCCSEEECCCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH------CC--CCcccCChhhCCHhhCCcccEEEecCC
Confidence 37999999999999999999998899999996 33443443 22 26788999987543 47999998776
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.022 Score=56.77 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCccHHHHHHH-Hc-C-CCeEEEEeChH-HHHHHHHHHHh--CCCCCCcEEEEEccccc
Q 015038 62 FIGRVVVDVGAGSGILSLFAA-QA-G-AKHVYAVEASE-MAEYARKLIAG--NPSLGERITVIKGKVEE 124 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a-~~-g-~~~V~gvD~s~-~~~~a~~~~~~--n~~l~~~i~vi~~d~~~ 124 (414)
.++.+|+||||+.|..+..++ +. + ..+|+++|+++ ..+..+++++. |+....++++++.-+-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 467899999999999999887 44 3 36899999995 77888998887 54232689988876654
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.035 Score=53.06 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=63.9
Q ss_pred CCEEEEECCCccHHHHHHHH----cCC-C--eEEEEeChH----------HHHHHHHHHHhCCCC-CC--cEEEEEcccc
Q 015038 64 GRVVVDVGAGSGILSLFAAQ----AGA-K--HVYAVEASE----------MAEYARKLIAGNPSL-GE--RITVIKGKVE 123 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~----~g~-~--~V~gvD~s~----------~~~~a~~~~~~n~~l-~~--~i~vi~~d~~ 123 (414)
.-+|||+|=|+|...+.+.+ .+. . +++++|..+ ..+..+......+.. .. .++++.+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 35899999999987654432 232 2 567777521 122233333221101 12 3567889987
Q ss_pred ccc--CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 124 EVE--LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 124 ~~~--~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+.- ++ .++|+|+.+.+..--..+-.-+.++..+.++++|||++.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 642 23 379999998765443333223678899999999999985
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.12 Score=49.48 Aligned_cols=124 Identities=11% Similarity=0.070 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCC-CCCcEEEEEcccc
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS-LGERITVIKGKVE 123 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~-l~~~i~vi~~d~~ 123 (414)
..|+..+.+.+...+.. ....|++||||-=.....+......+|+=||...++...++.+...+. ...+..++.+|+.
T Consensus 85 ~~Rt~~~d~~v~~~~~~-g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~ 163 (310)
T 2uyo_A 85 AVRTNFFDTYFNNAVID-GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLR 163 (310)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchH
Confidence 34554455555554422 235799999997666444432112478888865677888888765431 2467899999998
Q ss_pred cccC----------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 124 EVEL----------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 124 ~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+ .. +...=+++++.+.+++..+ ....+++.+...+.||+.++++..
T Consensus 164 d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~-~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 164 Q-DWPPALRSAGFDPSARTAWLAEGLLMYLPAT-AQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp S-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEECC
T ss_pred h-hHHHHHHhccCCCCCCEEEEEechHhhCCHH-HHHHHHHHHHHhCCCCeEEEEEec
Confidence 6 21 1245578889888888765 578899999888899999987754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.039 Score=53.92 Aligned_cols=98 Identities=24% Similarity=0.284 Sum_probs=61.8
Q ss_pred HHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-----c
Q 015038 55 VIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-----E 126 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-----~ 126 (414)
+.+.....++.+||-+|||. |.++..+|++ |+++|+++|.+ +.++.+++. + . + .++..+-.++ .
T Consensus 182 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----G-a-~--~vi~~~~~~~~~~~~~ 253 (371)
T 1f8f_A 182 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G-A-T--HVINSKTQDPVAAIKE 253 (371)
T ss_dssp HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHH
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----C-C-C--EEecCCccCHHHHHHH
Confidence 33444556789999999986 8888888875 88789999998 466666543 1 1 1 2333221111 0
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++.+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 254 ~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 254 ITDGGVNFALEST-G----S----PEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp HTTSCEEEEEECS-C----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCCcEEEECC-C----C----HHHHHHHHHHHhcCCEEEEe
Confidence 123799998522 1 1 23345566899999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.076 Score=51.58 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=61.8
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEE-----cccc----c
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIK-----GKVE----E 124 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~-----~d~~----~ 124 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +-++.+++. ... .+.... .++. +
T Consensus 173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~-----~~~~~~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE-----VVTHKVERLSAEESAKKIVE 246 (363)
T ss_dssp HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT-----CEEEECCSCCHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh-----cccccccccchHHHHHHHHH
Confidence 344556788999999976 7888888876 88779999998 467777765 211 122221 1111 1
Q ss_pred ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
......+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 247 ~t~g~g~Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 247 SFGGIEPAVALECT-G----V----ESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp HTSSCCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 11134799999521 1 2 22345556889999998754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.12 Score=49.96 Aligned_cols=95 Identities=25% Similarity=0.299 Sum_probs=59.3
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc---cccc----c-
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK---VEEV----E- 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d---~~~~----~- 126 (414)
.....++.+||-+|+|. |.++..+|++ |+++|+++|.++ .++.+++ .+ . + .++..+ ..++ .
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~--~vi~~~~~~~~~~~~~i~~ 237 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IG-A-D--LVLQISKESPQEIARKVEG 237 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT-C-S--EEEECSSCCHHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hC-C-C--EEEcCcccccchHHHHHHH
Confidence 34556789999999986 7888888775 776899999984 5566554 22 2 1 233322 1111 0
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 238 ~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 238 QLGCKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHTSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred HhCCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 014699998532 1 1 22334556889999998754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.047 Score=51.99 Aligned_cols=70 Identities=17% Similarity=0.050 Sum_probs=52.6
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCe--EEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC-----CceeEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKH--VYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP-----EKADIL 134 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~--V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-----~~fDvI 134 (414)
...+|+|+.||.|.+++.+.++|... |+++|+++.+ +..+.+. . ...++.+|+.++... ..+|++
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~------~-~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH------Q-GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT------T-TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC------C-CCceeCCChHHccHHHhcccCCcCEE
Confidence 34589999999999999999999875 7999999643 3333332 1 246788999887422 369999
Q ss_pred EEcCC
Q 015038 135 ISEPM 139 (414)
Q Consensus 135 is~~~ 139 (414)
+..++
T Consensus 88 ~ggpP 92 (295)
T 2qrv_A 88 IGGSP 92 (295)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98776
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.18 Score=49.65 Aligned_cols=103 Identities=13% Similarity=-0.073 Sum_probs=61.1
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------c
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV--------E 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--------~ 126 (414)
.....++.+||.+|||. |.++..+|++ |+.+|+++|.++ .++.+++ .+ . +++..+-.++ .
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG---a--~~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG---F--ETIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT---C--EEEETTSSSCHHHHHHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC---C--cEEcCCCcchHHHHHHHHh
Confidence 34556789999999987 8888888875 877899999984 5555543 22 1 2343221121 1
Q ss_pred CCCceeEEEEcCCccccCC-----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVN-----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-..-...... .......+....+.|+++|+++..
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 1136999985322111000 000112345566889999998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.0091 Score=57.65 Aligned_cols=72 Identities=15% Similarity=0.021 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+.+.+++.. ..++..|||..||+|..+..+.+.|. +.+|+|+++ .++.|++++...+ .....+..|+.++..
T Consensus 241 l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~---~~~~~~~~~~~~i~~ 313 (323)
T 1boo_A 241 LPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN---ISEEKITDIYNRILN 313 (323)
T ss_dssp HHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC---SCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHc
Confidence 334444443 35788999999999999999999876 799999995 7788888876543 234445555555443
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.38 Score=44.71 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=67.3
Q ss_pred CCEEEEECCCccHHHHHHHHc--------CCCeEEEEeC-----hH--------------------HHHHHHHHH-----
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--------GAKHVYAVEA-----SE--------------------MAEYARKLI----- 105 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--------g~~~V~gvD~-----s~--------------------~~~~a~~~~----- 105 (414)
+..|+|+|+-.|..++.++.. ..++|+++|. .. ..+..++.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 458999999999887776642 2368999993 10 011122211
Q ss_pred -HhCCCCCCcEEEEEccccccc------CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 106 -AGNPSLGERITVIKGKVEEVE------LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 106 -~~n~~l~~~i~vi~~d~~~~~------~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+..+...++|+++.|++.+.- .+ +++|+|..+.- . .+. -...++.+...|+|||+++++..
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D-~---Y~~-t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD-L---YEP-TKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC-C---HHH-HHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc-c---cch-HHHHHHHHHHHhCCCcEEEEcCC
Confidence 122323578999999997741 12 47999998642 1 122 34556778899999999999875
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.036 Score=53.71 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=51.1
Q ss_pred CEEEEECCCccHHHHHHHHcCC--CeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEEEc
Q 015038 65 RVVVDVGAGSGILSLFAAQAGA--KHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILISE 137 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~--~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIis~ 137 (414)
.+++|+.||.|.+++.+.++|. +.|.++|+++.+ +.-+.+.. ...++.+|+.++... ..+|+++..
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-------CCceeccccccCCHHHhccCCCCEEEec
Confidence 3799999999999999999886 678999999643 44444422 234678899887532 269999987
Q ss_pred CC
Q 015038 138 PM 139 (414)
Q Consensus 138 ~~ 139 (414)
++
T Consensus 77 pP 78 (333)
T 4h0n_A 77 PP 78 (333)
T ss_dssp CC
T ss_pred CC
Confidence 76
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.22 Score=48.63 Aligned_cols=96 Identities=20% Similarity=0.241 Sum_probs=60.4
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc--------
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------- 125 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------- 125 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.++ ..+.+++. + .. .++...-.++
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G-a~---~vi~~~~~~~~~~i~~~~ 247 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----G-AT---ATVDPSAGDVVEAIAGPV 247 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T-CS---EEECTTSSCHHHHHHSTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C-CC---EEECCCCcCHHHHHHhhh
Confidence 344556889999999976 7777777775 887899999984 56666553 2 11 2222111111
Q ss_pred -cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 -ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 -~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++.+|+|+-.. + . ...+..+.+.|+++|.++..
T Consensus 248 ~~~~gg~Dvvid~~-G----~----~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 248 GLVPGGVDVVIECA-G----V----AETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSSTTCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCCCCEEEECC-C----C----HHHHHHHHHHhccCCEEEEE
Confidence 1124799999521 1 1 22345566889999998754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.15 Score=49.08 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEE
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis 136 (414)
...++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++ .+ . + . ++ .+...+ .+.+|+|+-
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lG-a-~-~-v~-~~~~~~--~~~~D~vid 240 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MG-V-K-H-FY-TDPKQC--KEELDFIIS 240 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TT-C-S-E-EE-SSGGGC--CSCEEEEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cC-C-C-e-ec-CCHHHH--hcCCCEEEE
Confidence 556889999999986 7888777775 77 79999998 45566554 22 1 1 2 22 343333 238999995
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.. + .+. .+....+.|+++|+++..
T Consensus 241 ~~-g----~~~----~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 241 TI-P----THY----DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp CC-C----SCC----CHHHHHTTEEEEEEEEEC
T ss_pred CC-C----cHH----HHHHHHHHHhcCCEEEEE
Confidence 32 2 111 123455899999998754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.051 Score=52.50 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCEEEEECCCccHHHHHHHHcCC--CeE-EEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGA--KHV-YAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILI 135 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~--~~V-~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIi 135 (414)
..+|+|+.||.|.+++.+.++|. ..| .++|+++ .++..+.+... . ++.+|+.++... ..+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~--~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E--VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C--CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C--cccCChhhcCHHHhccCCCCEEE
Confidence 35899999999999999999984 667 8999996 44555555421 1 567888887532 2699999
Q ss_pred EcCC
Q 015038 136 SEPM 139 (414)
Q Consensus 136 s~~~ 139 (414)
..++
T Consensus 82 ggpP 85 (327)
T 3qv2_A 82 MSPP 85 (327)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8777
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.16 Score=49.69 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=60.5
Q ss_pred HHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc--ccccc---
Q 015038 55 VIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK--VEEVE--- 126 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d--~~~~~--- 126 (414)
+.+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.|++ .+ . . .++... -.++.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lG-a--~-~vi~~~~~~~~~~~~i 256 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FG-V--N-EFVNPKDHDKPIQEVI 256 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TT-C--C-EEECGGGCSSCHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cC-C--c-EEEccccCchhHHHHH
Confidence 33444556788999999975 7888887776 88789999988 46665543 22 1 1 223221 11110
Q ss_pred ---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 ---LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 ---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
.++.+|+|+-.. + . ...+..+.+.|++| |+++..
T Consensus 257 ~~~~~gg~D~vid~~-g----~----~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 257 VDLTDGGVDYSFECI-G----N----VSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HHhcCCCCCEEEECC-C----C----HHHHHHHHHHhhccCCEEEEE
Confidence 124799999521 1 1 23345566899996 988754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.23 Score=48.34 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=59.3
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc--cccc-----
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV--EEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~--~~~~----- 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .+ . + .++..+- .++.
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~--~vi~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LG-A-T--ECLNPKDYDKPIYEVICE 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TT-C-S--EEECGGGCSSCHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cC-C-c--EEEecccccchHHHHHHH
Confidence 344556789999999876 7777777775 88789999988 45566553 22 1 1 2232110 1110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..+.+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 257 ~t~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 257 KTNGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp HTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEEEE
Confidence 123799999521 1 1 22345566899999 998753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.054 Score=53.61 Aligned_cols=98 Identities=20% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------cCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------ELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~~~ 129 (414)
...++.+||-+|+|. |.++..+|++ |+.+|+++|.++ -++.+++. + . -.++..+-.++ ....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----G-a---~~vi~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----G-A---DHVIDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----T-C---SEEECTTTSCHHHHHHHHTTTC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----C-C---CEEEcCCCCCHHHHHHHHhCCC
Confidence 456788999999976 7777777775 887899999884 66666553 1 1 12332221121 1123
Q ss_pred ceeEEEEcCCccccCCh-hhHHHHHHHHHhccCCCeEEEccc
Q 015038 130 KADILISEPMGTLLVNE-RMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+|+|+-.. + .+ .....++..+.+.++++|+++..-
T Consensus 282 g~D~vid~~-g----~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 282 GAKLFLEAT-G----VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CCSEEEECS-S----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCEEEECC-C----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 699999521 1 22 123444444445569999987643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.029 Score=54.41 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=60.5
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+.+|+++|.++ .++.+++. + . -.++..+-.++ .
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G-a---~~vi~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----G-A---TDIINYKNGDIVEQILKAT 231 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----T-C---CEEECGGGSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----C-C---ceEEcCCCcCHHHHHHHHc
Confidence 444556788999999986 8888888886 776899999984 56666653 1 1 12332221111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-. .+ .. ..+....+.|+++|+++..
T Consensus 232 ~g~g~D~v~d~-~g----~~----~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 232 DGKGVDKVVIA-GG----DV----HTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTCCEEEEEEC-SS----CT----THHHHHHHHEEEEEEEEEC
T ss_pred CCCCCCEEEEC-CC----Ch----HHHHHHHHHHhcCCEEEEe
Confidence 12369999952 11 11 2234456789999998744
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.26 Score=47.97 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc--cccc-----
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV--EEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~--~~~~----- 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .+ . + .++..+- .++.
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~--~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LG-A-T--DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TT-C-S--EEECGGGCSSCHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hC-C-c--EEEccccccchHHHHHHH
Confidence 344556788999999875 7777777775 77689999988 45565543 22 1 1 2222110 1110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..+.+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 261 ~~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 261 LTAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEEEE
Confidence 113799998521 1 1 22345566899999 998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.28 Score=47.78 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=59.0
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc--cccc-----
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV--EEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~--~~~~----- 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+.+|+++|.+ +.++.+++ .+ . + .++...- .++.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FG-A-T--DFVNPNDHSEPISQVLSK 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TT-C-C--EEECGGGCSSCHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hC-C-c--eEEeccccchhHHHHHHH
Confidence 334556788999999875 7777777775 77689999988 45566553 22 1 1 2222110 1110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..+.+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 258 ~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 258 MTNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HHTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEEEE
Confidence 113699998532 1 1 22345566899999 998754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.15 Score=48.41 Aligned_cols=90 Identities=19% Similarity=0.071 Sum_probs=57.4
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeE
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADI 133 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDv 133 (414)
+.....++.+||-+|+|. |.++..+|++ |+ +|++++ + +..+.+++. + . -.++. |..++ .+.+|+
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----G-a---~~v~~-d~~~v--~~g~Dv 202 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----G-V---RHLYR-EPSQV--TQKYFA 202 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----T-E---EEEES-SGGGC--CSCEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----C-C---CEEEc-CHHHh--CCCccE
Confidence 445566889999999975 7888888876 87 899999 7 466666553 2 1 12232 43333 568999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+-. .+.- .+ ....+.|+++|+++..
T Consensus 203 v~d~-~g~~--------~~-~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 203 IFDA-VNSQ--------NA-AALVPSLKANGHIICI 228 (315)
T ss_dssp EECC-----------------TTGGGEEEEEEEEEE
T ss_pred EEEC-CCch--------hH-HHHHHHhcCCCEEEEE
Confidence 9842 2211 11 3346889999998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.28 Score=47.69 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=59.3
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc--cccc-----
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV--EEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~--~~~~----- 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++. + . + .++...- .++.
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----G-a-~--~vi~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----G-A-T--ECINPQDFSKPIQEVLIE 255 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----T-C-S--EEECGGGCSSCHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----C-C-c--eEeccccccccHHHHHHH
Confidence 344556788999999876 7777777775 87789999988 466666543 2 1 1 2222110 1110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..+.+|+|+-.. + . ...+..+.+.|+++ |+++..
T Consensus 256 ~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 256 MTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp HTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEEEE
Confidence 113799998532 1 1 22345566899999 998753
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.051 Score=55.33 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=52.4
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccC----------------
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVEL---------------- 127 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------------- 127 (414)
.+++|+.||.|.+++.+.++|...|.++|+++.+ +.-+.+... .....++.+|+.++..
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC----DPATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC----CTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc----CCCcceeccchhhhhhccccccchhhHHhhhh
Confidence 4899999999999999999998889999999643 444444311 1234577889887642
Q ss_pred --CCceeEEEEcCC
Q 015038 128 --PEKADILISEPM 139 (414)
Q Consensus 128 --~~~fDvIis~~~ 139 (414)
...+|+|+..++
T Consensus 165 ~~~~~~Dvl~gGpP 178 (482)
T 3me5_A 165 QHIPEHDVLLAGFP 178 (482)
T ss_dssp HHSCCCSEEEEECC
T ss_pred hcCCCCCEEEecCC
Confidence 136899998776
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.19 Score=48.32 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc--cc----ccCCCc
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV--EE----VELPEK 130 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~--~~----~~~~~~ 130 (414)
...++.+||-+|+|. |.++..+|++ |..+|+++|.++ -++.+++. + . + .++..+- .+ ......
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l----G-a-~--~~i~~~~~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV----G-A-D--AAVKSGAGAADAIRELTGGQG 239 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT----T-C-S--EEEECSTTHHHHHHHHHGGGC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C-C-C--EEEcCCCcHHHHHHHHhCCCC
Confidence 456789999999986 8888888875 567899999984 56666542 2 1 1 2232211 11 111237
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 240 ~d~v~d~~-G----~----~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFDFV-G----A----QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CeEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 99998521 1 2 22445566889999998754
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.27 Score=48.29 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc-----c---cC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE-----V---EL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~-----~---~~ 127 (414)
....++.+||-+|||. |.++..+|++ |+++|+++|.++ .++.+++ .+ . +++...-.+ + ..
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lG-a----~~i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QG-F----EIADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TT-C----EEEETTSSSCHHHHHHHHHS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cC-C----cEEccCCcchHHHHHHHHhC
Confidence 4456789999999986 8888888875 887899999984 6666654 22 1 233321111 1 11
Q ss_pred CCceeEEEEcCCcccc------CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLL------VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l------~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+-..-.... .+.......+....+.|+++|+++..
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 2369999953211100 00000122445566889999998653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.50 E-value=0.34 Score=47.09 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc--cccc-----
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV--EEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~--~~~~----- 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+++|+++|.+ +.++.+++ .+ . + .++..+- .++.
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VG-A-T--ECVNPQDYKKPIQEVLTE 256 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TT-C-S--EEECGGGCSSCHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hC-C-c--eEecccccchhHHHHHHH
Confidence 334556788999999876 7777777775 77689999988 45566543 22 1 1 2222110 1110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
..+.+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 257 ~~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 257 MSNGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp HTTSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEEEC
T ss_pred HhCCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEEEe
Confidence 123799998532 1 1 22345556889999 988753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.15 Score=48.89 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=59.5
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCC
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPE 129 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~ 129 (414)
.....++.+||-+|+|. |.++..++++ |+ +|+++|.++ .++.+++ .+ . . .++..+-.++. ..+
T Consensus 161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lG-a--~-~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LG-A--E-VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp TTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TT-C--S-EEEETTTSCHHHHHHHHHS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cC-C--C-EEEeCCCcCHHHHHHHhCC
Confidence 34556788999999986 8888888876 77 799999984 5666554 22 1 1 22322211210 113
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+|+|+-... . ...+..+.+.|+++|+++..
T Consensus 232 ~~d~vid~~g-----~----~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTAV-----S----PKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeCC-----C----HHHHHHHHHHhccCCEEEEe
Confidence 6899885321 1 23345566889999998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.091 Score=49.80 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=43.9
Q ss_pred CcEEEEEccccccc--CC-CceeEEEEcCCccccCC--------------h---hhHHHHHHHHHhccCCCeEEEcccce
Q 015038 113 ERITVIKGKVEEVE--LP-EKADILISEPMGTLLVN--------------E---RMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 113 ~~i~vi~~d~~~~~--~~-~~fDvIis~~~~~~l~~--------------e---~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+++++++|+.++- ++ ++||+|+++|+...... + ..+..++.++.++|||||.+++..+.
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 46789999998842 33 68999999998643211 0 11345778899999999999887664
Q ss_pred eE
Q 015038 173 IH 174 (414)
Q Consensus 173 ~~ 174 (414)
.+
T Consensus 100 ~~ 101 (297)
T 2zig_A 100 VA 101 (297)
T ss_dssp EE
T ss_pred Cc
Confidence 43
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.32 Score=47.51 Aligned_cols=94 Identities=23% Similarity=0.366 Sum_probs=57.6
Q ss_pred cC-CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc---cccc------
Q 015038 59 RA-DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK---VEEV------ 125 (414)
Q Consensus 59 ~~-~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d---~~~~------ 125 (414)
.. ..++.+||-+|+|. |.++..+|++ |+.+|++++.+ +.++.+++ .+ . + .++..+ -.++
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lG-a-~--~vi~~~~~~~~~~~~~v~~ 261 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IG-A-D--LTLNRRETSVEERRKAIMD 261 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TT-C-S--EEEETTTSCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cC-C-c--EEEeccccCcchHHHHHHH
Confidence 44 56789999999775 7777777775 75689999988 45565553 22 1 1 233322 1111
Q ss_pred -cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 -ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 -~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. + .. ..+....+.|+++|+++..
T Consensus 262 ~~~g~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 262 ITHGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HTTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 1123699999532 1 11 1234455789999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.5 Score=45.47 Aligned_cols=94 Identities=23% Similarity=0.292 Sum_probs=57.3
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc-ccc----c--C
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV-EEV----E--L 127 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~----~--~ 127 (414)
.....++.+||-+|+|. |.++..+|++ |++ |++++.++ .++.+++ .+ . + .++..+- .++ . .
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~~~~~~~~~~~----lG-a-~--~~~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKN----CG-A-D--VTLVVDPAKEEESSIIERI 233 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHH----TT-C-S--EEEECCTTTSCHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHH----hC-C-C--EEEcCcccccHHHHHHHHh
Confidence 34456789999999875 7777777775 774 99999884 5565553 22 2 1 2232210 111 0 1
Q ss_pred ----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 ----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 234 ~~~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred ccccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 24699998532 1 1 22344556889999998754
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.12 Score=54.95 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc----------CC---CeEEEEeC---h-HHHHH-----------HHHHHHhCCC----
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA----------GA---KHVYAVEA---S-EMAEY-----------ARKLIAGNPS---- 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~----------g~---~~V~gvD~---s-~~~~~-----------a~~~~~~n~~---- 110 (414)
+.-+|+|+|-|+|...+.+.++ .. -+++++|. + +.+.. +++.....+.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 4469999999999887766553 11 37999998 3 22222 2233332210
Q ss_pred -----CC---CcEEEEEccccccc--C----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 111 -----LG---ERITVIKGKVEEVE--L----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 111 -----l~---~~i~vi~~d~~~~~--~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+. -.++++.||+.+.- + ..++|.++.+.+......+-.-..++..+.++++|||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01 25678889987642 2 25799999987644333332246778888999999998753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.63 Score=45.12 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCCEEEEEC-CCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc--c----cccccCCCcee
Q 015038 63 IGRVVVDVG-AGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG--K----VEEVELPEKAD 132 (414)
Q Consensus 63 ~~~~VLDiG-cGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~--d----~~~~~~~~~fD 132 (414)
++.+||-+| +|. |.++..+|++ +..+|++++.+ +-++.+++ .+ . + .++.. + +.+. ..+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lG-a-d--~vi~~~~~~~~~v~~~-~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LG-A-H--HVIDHSKPLAAEVAAL-GLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TT-C-S--EEECTTSCHHHHHHTT-CSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cC-C-C--EEEeCCCCHHHHHHHh-cCCCce
Confidence 678999998 665 8899999986 56689999998 45666654 22 1 1 22221 1 1111 124799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|+-.. + -...+..+.+.|+++|+++..
T Consensus 242 vvid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTT-H--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECS-C--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECC-C--------chhhHHHHHHHhcCCCEEEEE
Confidence 998521 1 123445666889999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.088 Score=50.84 Aligned_cols=94 Identities=27% Similarity=0.319 Sum_probs=57.3
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------cC
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------EL 127 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~ 127 (414)
.... ++.+||-+|+|. |.++..++++ |+++|++++.++ .++.+++. + . + .++..+-.++ ..
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----G-a-~--~~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----G-A-D--YVINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----T-C-S--EEECTTTSCHHHHHHHHTT
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----C-C-C--EEECCCCcCHHHHHHHHcC
Confidence 3445 888999999965 7777777765 775799999984 55666542 1 1 1 2222211111 11
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+... + . ...+....+.|+++|+++..
T Consensus 234 g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 234 GNGVDVFLEFS-G----A----PKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TSCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 23699999632 1 1 22345556889999998754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.27 Score=47.13 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=58.4
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
......++.+||-.|+|. |.++..++++ |+..++++|.++ -++.|++. + . ..++..+-.+. .
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l----G-a---~~~i~~~~~~~~~~~~~~~ 225 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF----G-A---MQTFNSSEMSAPQMQSVLR 225 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T-C---SEEEETTTSCHHHHHHHHG
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc----C-C---eEEEeCCCCCHHHHHHhhc
Confidence 334556889999999986 6667666665 888889999984 55666542 2 1 12332221111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-. .+ . ...+....+.|+++|.++..
T Consensus 226 ~~~g~d~v~d~-~G----~----~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 226 ELRFNQLILET-AG----V----PQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp GGCSSEEEEEC-SC----S----HHHHHHHHHHCCTTCEEEEC
T ss_pred ccCCccccccc-cc----c----cchhhhhhheecCCeEEEEE
Confidence 12457888742 11 1 23345556889999998754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.042 Score=53.03 Aligned_cols=92 Identities=22% Similarity=0.345 Sum_probs=56.2
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc-------ccC
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE-------VEL 127 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~-------~~~ 127 (414)
.... ++.+||-+|+|. |.++..+|++ |+++|++++.++ .++.+++. . + .++..+-.+ ..
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a-----~--~v~~~~~~~~~~~~~~~~- 228 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A-----D--RLVNPLEEDLLEVVRRVT- 228 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C-----S--EEECTTTSCHHHHHHHHH-
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H-----H--hccCcCccCHHHHHHHhc-
Confidence 3445 888999999965 7777777775 775799999984 44444432 1 1 222211111 11
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 229 ~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 229 GSGVEVLLEFS-G----N----EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SSCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 34699999532 1 1 12345556889999998754
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=1.4 Score=42.46 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=76.6
Q ss_pred hhhhHHHHHHHHHhcCCC-CCCEEEEECCCccHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHhCCC-----------
Q 015038 45 YVRTGTYYAAVIENRADF-IGRVVVDVGAGSGILSLFAAQAG--AKHVYAVEASEMAEYARKLIAGNPS----------- 110 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~-~~~~VLDiGcGtG~ls~~~a~~g--~~~V~gvD~s~~~~~a~~~~~~n~~----------- 110 (414)
+.|+..+...+.+.+... +...|+-+|||.=.....+...+ ..+++=||..+.++.-++.+...+.
T Consensus 71 ~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~ 150 (334)
T 3iei_A 71 FARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSE 150 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccc
Confidence 456666666665554433 45799999999987777776642 2356666666555443444432100
Q ss_pred ----------CCCcEEEEEccccccc----------C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 111 ----------LGERITVIKGKVEEVE----------L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 111 ----------l~~~i~vi~~d~~~~~----------~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
...+..++.+|+.+.. + +...=+++++.+..++.. .....+++.+.+.. |+|.++
T Consensus 151 ~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~-~~~~~ll~~ia~~f-~~~~~i 226 (334)
T 3iei_A 151 DTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTP-EQSANLLKWAANSF-ERAMFI 226 (334)
T ss_dssp SSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-HHHHHHHHHHHHHC-SSEEEE
T ss_pred cccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCH-HHHHHHHHHHHHhC-CCceEE
Confidence 1467889999987631 1 234568899988887764 44778888887665 455544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.43 E-value=0.29 Score=46.98 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH----HHHHHHHHHHhC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE----MAEYARKLIAGN 108 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~----~~~~a~~~~~~n 108 (414)
.+.+.+++... .++..|||..||+|..+..+.+.|. +.+|+|+++ .++.|++++...
T Consensus 230 ~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 230 AVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 34444555443 5788999999999999999999876 799999985 557777776543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.07 Score=51.39 Aligned_cols=95 Identities=21% Similarity=0.087 Sum_probs=57.5
Q ss_pred HHhcCCCCCCEEEEECCCc--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc------
Q 015038 56 IENRADFIGRVVVDVGAGS--GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV------ 125 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGt--G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------ 125 (414)
.+.....++++||-+|+|+ |.++..+++. |+ +|++++.+ +.++.+++. + . + .++...-.++
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----g-a-~--~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----G-A-A--YVIDTSTAPLYETVME 207 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----T-C-S--EEEETTTSCHHHHHHH
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----C-C-c--EEEeCCcccHHHHHHH
Confidence 3445567889999999974 6677776665 87 79999998 456666653 1 1 1 2232211111
Q ss_pred -cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 -ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 -~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. +. ..... ..+.|+++|+++..
T Consensus 208 ~~~~~g~Dvvid~~-g~--------~~~~~-~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 208 LTNGIGADAAIDSI-GG--------PDGNE-LAFSLRPNGHFLTI 242 (340)
T ss_dssp HTTTSCEEEEEESS-CH--------HHHHH-HHHTEEEEEEEEEC
T ss_pred HhCCCCCcEEEECC-CC--------hhHHH-HHHHhcCCCEEEEE
Confidence 1124799999632 11 11222 23789999998754
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.13 Score=49.21 Aligned_cols=94 Identities=22% Similarity=0.186 Sum_probs=57.2
Q ss_pred HhcCCCCCCEEEEEC-CC-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------
Q 015038 57 ENRADFIGRVVVDVG-AG-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV------- 125 (414)
Q Consensus 57 ~~~~~~~~~~VLDiG-cG-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------- 125 (414)
+.....++++||-.| +| .|.++..++++ |+ +|++++.+ +-++.+++. + . + .++..+-.++
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----G-a-~--~~~~~~~~~~~~~~~~~ 204 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----G-A-W--ETIDYSHEDVAKRVLEL 204 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C-C-C--EEEeCCCccHHHHHHHH
Confidence 334556789999999 44 37777777765 77 79999988 456666542 1 1 1 2232221221
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. +. . .+....+.|+++|+++..
T Consensus 205 ~~~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 205 TDGKKCPVVYDGV-GQ-----D----TWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp TTTCCEEEEEESS-CG-----G----GHHHHHTTEEEEEEEEEC
T ss_pred hCCCCceEEEECC-Ch-----H----HHHHHHHHhcCCCEEEEE
Confidence 1124799998632 21 1 234456899999998764
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.74 Score=48.54 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=65.6
Q ss_pred CCEEEEECCCccHHHHHHHHcC-----------C--CeEEEEeC---h-HHHHH-----------HHHHHHhCCCC----
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG-----------A--KHVYAVEA---S-EMAEY-----------ARKLIAGNPSL---- 111 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g-----------~--~~V~gvD~---s-~~~~~-----------a~~~~~~n~~l---- 111 (414)
.-+|||+|-|+|...+.+.+.- . -+++++|. + +.+.. +++.....+..
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999998876665431 1 26899998 5 33321 22333222100
Q ss_pred --------CCcEEEEEccccccc--C----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 112 --------GERITVIKGKVEEVE--L----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 112 --------~~~i~vi~~d~~~~~--~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.-.+++..+|+.+.- + ..+||+++.+.+......+-.-..++..+.++++|||.+..
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 123556778876531 1 25799999987654433332246778889999999999864
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.89 Score=43.98 Aligned_cols=94 Identities=24% Similarity=0.209 Sum_probs=58.6
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
+.....++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++. + . + .++..+..++ .
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~vi~~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----G-A-D--HGINRLEEDWVERVYALT 253 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----C-C-C--EEEcCCcccHHHHHHHHh
Confidence 344556789999999886 7777777776 77 79999998 466666553 2 1 1 2333221221 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-.. + . . .+..+.+.|+++|.++..
T Consensus 254 ~g~g~D~vid~~-g----~-~----~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 254 GDRGADHILEIA-G----G-A----GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TTCCEEEEEEET-T----S-S----CHHHHHHHEEEEEEEEEE
T ss_pred CCCCceEEEECC-C----h-H----HHHHHHHHhhcCCEEEEE
Confidence 123799998532 2 1 1 123445789999998754
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=2.2 Score=40.58 Aligned_cols=98 Identities=21% Similarity=0.131 Sum_probs=55.9
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc----ccCCCce
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE----VELPEKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~----~~~~~~f 131 (414)
....++.+||-+|+|. |.++..+++ ++..+|+++|.++ -++.+++. + ...-+..-..|..+ ......+
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~----G-a~~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI----G-ADVTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT----T-CSEEEEC-CCCHHHHHHHHTTSSCE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc----C-CeEEEeCCCCCHHHHhhhhcCCCCc
Confidence 3456789999999987 455555554 5667899999985 45555442 2 11111111122211 1112357
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|.++.... . ...+....+.|+++|.++...
T Consensus 234 d~~~~~~~-----~----~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 234 QSAIVCAV-----A----RIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEEECCS-----C----HHHHHHHHHTEEEEEEEEECC
T ss_pred eEEEEecc-----C----cchhheeheeecCCceEEEEe
Confidence 77775321 1 233455568899999987654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.12 Score=49.95 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=59.0
Q ss_pred HHHHhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----
Q 015038 54 AVIENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---- 125 (414)
++.+.....++++||-.|+ | .|.++..++++ |+ +|++++.+ +.++.+++. + . + .++..+ .++
T Consensus 150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g-a-~--~v~~~~-~~~~~~v 219 (342)
T 4eye_A 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----G-A-D--IVLPLE-EGWAKAV 219 (342)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----T-C-S--EEEESS-TTHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----C-C-c--EEecCc-hhHHHHH
Confidence 3334445567899999998 3 47777777775 77 79999997 455666553 2 1 1 233332 222
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. +. + .+....+.|+++|.++..
T Consensus 220 ~~~~~~~g~Dvvid~~-g~----~-----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 220 REATGGAGVDMVVDPI-GG----P-----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCceEEEECC-ch----h-----HHHHHHHhhcCCCEEEEE
Confidence 1123699999632 21 1 234456889999998754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1.4 Score=41.77 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=55.3
Q ss_pred HhcCCCCCCEEEEECCC--ccHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 57 ENRADFIGRVVVDVGAG--SGILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcG--tG~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
+.....++++||..||+ .|..+..+++ .|+ +|++++.+ +.++.+++ .+ . ...+-..+..++.
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IG-F--DAAFNYKTVNSLEEALKKA 210 (333)
T ss_dssp TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT-C--SEEEETTSCSCHHHHHHHH
T ss_pred HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cC-C--cEEEecCCHHHHHHHHHHH
Confidence 44455678999999983 4655555555 477 79999998 45555532 12 1 1111111101110
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+++.+. + . ..+....+.|+++|+++..
T Consensus 211 ~~~~~d~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 211 SPDGYDCYFDNV-G-----G----EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp CTTCEEEEEESS-C-----H----HHHHHHHTTEEEEEEEEEC
T ss_pred hCCCCeEEEECC-C-----h----HHHHHHHHHHhcCCEEEEE
Confidence 124699999643 2 1 1245566899999998754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.63 Score=44.91 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=53.6
Q ss_pred CEEEEECCCc-cHHH-HHHH-Hc-CCCeEEEEeCh-H---HHHHHHHHHHhCCCCCCcEEEEEc---cccccc-CCCcee
Q 015038 65 RVVVDVGAGS-GILS-LFAA-QA-GAKHVYAVEAS-E---MAEYARKLIAGNPSLGERITVIKG---KVEEVE-LPEKAD 132 (414)
Q Consensus 65 ~~VLDiGcGt-G~ls-~~~a-~~-g~~~V~gvD~s-~---~~~~a~~~~~~n~~l~~~i~vi~~---d~~~~~-~~~~fD 132 (414)
.+||-+|+|. |.++ ..+| ++ |+++|++++.+ + .++.+++ .+ .+.+.. ++.++. ..+.+|
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG-----a~~v~~~~~~~~~i~~~~gg~D 244 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LD-----ATYVDSRQTPVEDVPDVYEQMD 244 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TT-----CEEEETTTSCGGGHHHHSCCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cC-----CcccCCCccCHHHHHHhCCCCC
Confidence 8999999875 7777 7888 65 77669999997 4 5666654 22 121221 111110 023799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|+-.. + . ...+..+.+.|+++|+++..
T Consensus 245 vvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 245 FIYEAT-G----F----PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred EEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 998421 1 1 12345556889999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.24 E-value=0.61 Score=44.72 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc----c-cccccCCC
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG----K-VEEVELPE 129 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~----d-~~~~~~~~ 129 (414)
.. ++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++. + . + .++.. + +.++....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~vi~~~~~~~~~~~~~~g~ 237 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----G-A-D--YVSEMKDAESLINKLTDGL 237 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----T-C-S--EEECHHHHHHHHHHHHTTC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----C-C-C--EEeccccchHHHHHhhcCC
Confidence 45 889999999975 7777777764 66 69999988 466666552 1 1 1 22221 1 11111123
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+|+|+-.. + . ...+....+.|+++|+++..
T Consensus 238 g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 238 GASIAIDLV-G----T----EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp CEEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CccEEEECC-C----C----hHHHHHHHHHhhcCCEEEEe
Confidence 799999532 1 1 22345556889999998753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.18 E-value=1.1 Score=42.89 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=53.9
Q ss_pred CCCEEEEE-CCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcc--c----ccccCCCcee
Q 015038 63 IGRVVVDV-GAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK--V----EEVELPEKAD 132 (414)
Q Consensus 63 ~~~~VLDi-GcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d--~----~~~~~~~~fD 132 (414)
++.+||-+ |+|. |.++..++++ |+ +|++++.+ +-++.+++. + . + .++..+ . .+. ..+.+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~vi~~~~~~~~~~~~~-~~~g~D 219 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----G-A-D--IVLNHKESLLNQFKTQ-GIELVD 219 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----T-C-S--EEECTTSCHHHHHHHH-TCCCEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----C-C-c--EEEECCccHHHHHHHh-CCCCcc
Confidence 68899999 4554 7777777775 77 79999997 466666652 1 1 1 222211 1 111 124799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+-.. + -...+..+.+.|+++|.++.
T Consensus 220 vv~d~~-g--------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 220 YVFCTF-N--------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EEEESS-C--------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECC-C--------chHHHHHHHHHhccCCEEEE
Confidence 998521 1 12344556688999999864
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.099 Score=63.41 Aligned_cols=100 Identities=19% Similarity=0.014 Sum_probs=47.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-C-----CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-c-CCCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-G-----AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-E-LPEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g-----~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~-~~~~fDv 133 (414)
+..+||+||+|+|..+..+.+. + ...++..|+|+ ..+.|+++++.. .++.-.-|..+. . .+..||+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-----TEEEECCCSSCCCC-----CCE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-----ccccccccccccccCCCCceeE
Confidence 4569999999999765544432 2 23688899984 666666665431 122211122221 0 2357999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||+....|... .+...+..++++|||||.+++..
T Consensus 1315 via~~vl~~t~---~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNCALATLG---DPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEECC-----------------------CCEEEEEE
T ss_pred EEEcccccccc---cHHHHHHHHHHhcCCCcEEEEEe
Confidence 99865544332 25667788899999999987754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.84 E-value=0.65 Score=45.17 Aligned_cols=92 Identities=24% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCCCceeEE
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELPEKADIL 134 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~~fDvI 134 (414)
...++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++. + . + .++...-.+. ...+.+|+|
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----G-a-~--~vi~~~~~~~~~~~~~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----G-A-D--EVVNSRNADEMAAHLKSFDFI 261 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----T-C-S--EEEETTCHHHHHTTTTCEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----C-C-c--EEeccccHHHHHHhhcCCCEE
Confidence 456789999999986 7777777775 77 59999988 466666642 1 1 1 2232211111 112579999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+-.. +. .. .+....+.|+++|.++..
T Consensus 262 id~~-g~----~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 262 LNTV-AA----PH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EECC-SS----CC----CHHHHHTTEEEEEEEEEC
T ss_pred EECC-CC----HH----HHHHHHHHhccCCEEEEe
Confidence 8532 21 11 123445889999998753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.72 E-value=1.2 Score=38.67 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=53.6
Q ss_pred HhcCCCCCCEEEEECCC--ccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------
Q 015038 57 ENRADFIGRVVVDVGAG--SGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV------- 125 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcG--tG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------- 125 (414)
+.....++++||..|++ .|.....+++ .|+ +|++++.++ .++.+++ .+ . .. ++..+-.+.
T Consensus 32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g-~--~~-~~d~~~~~~~~~~~~~ 102 (198)
T 1pqw_A 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LG-V--EY-VGDSRSVDFADEILEL 102 (198)
T ss_dssp TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TC-C--SE-EEETTCSTHHHHHHHH
T ss_pred HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cC-C--CE-EeeCCcHHHHHHHHHH
Confidence 33445678999999953 3555554444 477 799999984 4444432 22 1 11 222111111
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+++.+. + . ..+....+.|+++|+++..
T Consensus 103 ~~~~~~D~vi~~~-g----~-----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 103 TDGYGVDVVLNSL-A----G-----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp TTTCCEEEEEECC-C----T-----HHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCCeEEEECC-c----h-----HHHHHHHHHhccCCEEEEE
Confidence 1123699999643 2 1 2345566899999998753
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=3.9 Score=38.00 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..++++||-.|++.|+ ++..+++.|+ +|+.++.+ + ..+.+.+..... ..++.++.+|+.+...
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE---GVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT---TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHH
Confidence 3578899999988763 4555666787 69999987 3 444455544443 3579999999987521
Q ss_pred ---CCceeEEEEcCCccc----cC--ChhhH-----------HHHHHHHHhccCCCeEEEcc
Q 015038 128 ---PEKADILISEPMGTL----LV--NERML-----------ETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~----l~--~e~~l-----------~~~l~~~~r~LkpgG~lip~ 169 (414)
-+++|++|.+.-... +. ....+ -.+.+.+.+.++++|.++..
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i 181 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT 181 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence 147899997632111 10 11111 23456667778888876643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.32 E-value=0.4 Score=45.92 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=44.9
Q ss_pred CcEEEEEcccccc-c-C-CCceeEEEEcCCccccCC-----------hhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 113 ERITVIKGKVEEV-E-L-PEKADILISEPMGTLLVN-----------ERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 113 ~~i~vi~~d~~~~-~-~-~~~fDvIis~~~~~~l~~-----------e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
.+..++++|..+. . + .++||+|+++|+...... ...+...+..+.++|+|||.+++.....
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 4688999998763 2 3 368999999998643211 1246677888899999999998876544
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=89.25 E-value=0.54 Score=45.04 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=55.7
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCce
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKA 131 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~f 131 (414)
...++++||-+|+|. |.++..+++. |+ +|++++.++ .++.+++ .+ . + .++...-.++. ..+.+
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lG-a-~--~~~d~~~~~~~~~~~~~~~~~ 231 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LG-A-D--LVVNPLKEDAAKFMKEKVGGV 231 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TT-C-S--EEECTTTSCHHHHHHHHHSSE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CC-C-C--EEecCCCccHHHHHHHHhCCC
Confidence 456789999999974 7777777665 77 799999884 5565543 22 1 1 22221111110 00469
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+-.. + . ...+....+.|+++|.++..
T Consensus 232 d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 232 HAAVVTA-V----S----KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECC-C----C----HHHHHHHHHHhhcCCEEEEe
Confidence 9998632 1 1 12345556789999998754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=5 Score=36.39 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCCCEEEEECCC--ccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAG--SGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcG--tG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.++++||-.|++ +|+ ++..+++.|+ +|+.++.++ ..+.+.+.....+ ..++.++.+|+.+...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD--RNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS--SCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC--CCCceEEeCCCCCHHHHHHHHHHH
Confidence 568899999987 443 4666777788 599998874 4455555544432 2378999999987531
Q ss_pred ---CCceeEEEEcCCccc--------c-CChhhHH-----------HHHHHHHhccCCCeEEEcc
Q 015038 128 ---PEKADILISEPMGTL--------L-VNERMLE-----------TYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~--------l-~~e~~l~-----------~~l~~~~r~LkpgG~lip~ 169 (414)
-+++|++|.+.-... . .....+. .+.+.+...++++|.++..
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 036899997642111 0 1111122 3456667778888887654
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=0.5 Score=52.19 Aligned_cols=69 Identities=25% Similarity=0.179 Sum_probs=49.0
Q ss_pred CCEEEEECCCccHHHHHHHHcCC-CeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccc----------------
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEV---------------- 125 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~---------------- 125 (414)
..+++|+.||.|.+++-+.++|. ..|.|+|+++.+ +.-+.|. ....++.+|+.++
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-------p~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-------PGSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-------TTSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------CCCccccccHHHHhhhccchhhhhhhhhh
Confidence 34899999999999999999997 678999999644 3333332 1245666665432
Q ss_pred -cCCCceeEEEEcCC
Q 015038 126 -ELPEKADILISEPM 139 (414)
Q Consensus 126 -~~~~~fDvIis~~~ 139 (414)
+..+.+|+|+..++
T Consensus 613 lp~~~~vDll~GGpP 627 (1002)
T 3swr_A 613 LPQKGDVEMLCGGPP 627 (1002)
T ss_dssp CCCTTTCSEEEECCC
T ss_pred cccCCCeeEEEEcCC
Confidence 11247999998776
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=88.86 E-value=1.3 Score=40.89 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.++|++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+ .++..+.+|+.+...
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG---KEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 4666777788 69999998 56665555555543 578999999987531
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 81 ~~G~iDiLVNNA 92 (254)
T 4fn4_A 81 TYSRIDVLCNNA 92 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.34 E-value=2.5 Score=40.19 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=56.4
Q ss_pred HhcCCCCCCEEEEECC--CccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc-cccccc-----
Q 015038 57 ENRADFIGRVVVDVGA--GSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG-KVEEVE----- 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~----- 126 (414)
+.....++++||-.|+ |.|..+..+++. |+ +|++++.++ .++.+++. .+ . . .++.. +..++.
T Consensus 149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~---~g-~--~-~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTK---FG-F--D-DAFNYKEESDLTAALKR 220 (345)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT---SC-C--S-EEEETTSCSCSHHHHHH
T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH---cC-C--c-eEEecCCHHHHHHHHHH
Confidence 4445567899999997 347776666664 77 799999984 55555421 22 1 1 12221 111110
Q ss_pred -CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 -LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 -~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+|+... + - ..+....+.|+++|.++..
T Consensus 221 ~~~~~~d~vi~~~-g--------~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 221 CFPNGIDIYFENV-G--------G-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HCTTCEEEEEESS-C--------H-HHHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCcEEEECC-C--------H-HHHHHHHHHHhcCCEEEEE
Confidence 124699999642 1 1 1345667899999998753
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.26 E-value=2.9 Score=40.81 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=65.5
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHH-HHHHHHHHhCCCCCC-cEEEEEcccccccCCCceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGE-RITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~-~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.+.+||.|+.+.|.++..++.. .++.+.-|-+. ..++.|+..|+ +.. ++++... .. .++..+|+|+.-++-
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~-~~~~~~~~~~~-~~--~~~~~~~~v~~~lpk 110 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNG-IDESSVKFLDS-TA--DYPQQPGVVLIKVPK 110 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTT-CCGGGSEEEET-TS--CCCSSCSEEEEECCS
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcC-CCccceEeccc-cc--ccccCCCEEEEEcCC
Confidence 4568999999999999888754 35666445444 45577888887 543 4666532 22 345789999975442
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
....+...+..+...|++|+.++.
T Consensus 111 ----~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 111 ----TLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp ----CHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred ----CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 334467778888899999998854
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.22 E-value=2.6 Score=39.26 Aligned_cols=101 Identities=20% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
+++|++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ ..++..+.+|+.+...
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI------GGGAVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------CTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999884 4666777788 69999998 4554433322 2457788899877521
Q ss_pred -CCceeEEEEcCCccc----c-CChhhHH-----------HHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTL----L-VNERMLE-----------TYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~----l-~~e~~l~-----------~~l~~~~r~LkpgG~lip~ 169 (414)
-++.|++|.+.-... . ..++.++ .+.+++.+.|+.+|.++..
T Consensus 100 ~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni 158 (273)
T 4fgs_A 100 EAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT 158 (273)
T ss_dssp HHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred HcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 157999997642111 0 1112221 3345556777788876543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.21 E-value=6.6 Score=35.93 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-------------HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-------------EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-------------~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
.++++||-.|++.|+ ++..+++.|+ +|+.+|.+ +.++.+...+... ..++.++.+|+.+.
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT---GRKAYTAEVDVRDR 83 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT---TSCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhc---CCceEEEEccCCCH
Confidence 568899999988763 4556667787 59999864 2334444444442 35799999999875
Q ss_pred cC-----------CCceeEEEEcCCcccc---CChhhHH-----------HHHHHHHhccCCCeEEEcc
Q 015038 126 EL-----------PEKADILISEPMGTLL---VNERMLE-----------TYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~-----------~~~fDvIis~~~~~~l---~~e~~l~-----------~~l~~~~r~LkpgG~lip~ 169 (414)
.. -+++|++|.+.-.... .....++ .+.+.+.+.++++|.++..
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 31 0378999976421111 1222222 3445666777778876543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=1.9 Score=41.00 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=58.4
Q ss_pred HHHHhcCCCCCCEEEEECCC--ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc---
Q 015038 54 AVIENRADFIGRVVVDVGAG--SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--- 126 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcG--tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--- 126 (414)
++.+.....++++||-.|++ .|..+..+++. |+ +|++++.++ -++.+.+ ..+ . . .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~---~~g-~--~-~~~~~~~~~~~~~~ 211 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVE---ELG-F--D-GAIDYKNEDLAAGL 211 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TTC-C--S-EEEETTTSCHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcC-C--C-EEEECCCHHHHHHH
Confidence 34344556788999999983 47777666665 77 899999884 4444422 222 1 1 22222111110
Q ss_pred ---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 ---LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+|+... +. ..+....+.|+++|+++..
T Consensus 212 ~~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 212 KRECPKGIDVFFDNV-GG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHHCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HHhcCCCceEEEECC-Cc---------chHHHHHHHHhhCCEEEEE
Confidence 124699998632 21 2345666899999998753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=1.9 Score=40.95 Aligned_cols=94 Identities=20% Similarity=0.167 Sum_probs=56.4
Q ss_pred HhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------
Q 015038 57 ENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV------- 125 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------- 125 (414)
+.....++++||-+|+ | .|.++..++++ |+ +|++++.+ +.++.+++ .+ .. .++..+-.++
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g---a~-~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YG---AE-YLINASKEDILRQVLKF 212 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT---CS-EEEETTTSCHHHHHHHH
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cC---Cc-EEEeCCCchHHHHHHHH
Confidence 3345567899999994 3 37777777765 77 79999997 45555544 22 11 2332222221
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. +. . .+....+.|+++|+++..
T Consensus 213 ~~~~g~D~vid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 213 TNGKGVDASFDSV-GK-----D----TFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTTSCEEEEEECC-GG-----G----GHHHHHHHEEEEEEEEEC
T ss_pred hCCCCceEEEECC-Ch-----H----HHHHHHHHhccCCEEEEE
Confidence 1134699998632 21 1 234445789999998754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=87.80 E-value=2.9 Score=38.03 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.. ..++.++.+|+.+...
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF------GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh------CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 578999999988763 4556667788 69999998 4444333332 2468999999987531
Q ss_pred -CCceeEEEEcCCcccc-----CChhhH-----------HHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGTLL-----VNERML-----------ETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~~l-----~~e~~l-----------~~~l~~~~r~LkpgG~lip~ 169 (414)
-+++|++|.+.-.... .....+ -.+.+.+.+.++++|.++..
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1479999976421111 011111 12345566677778877654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=87.39 E-value=1 Score=43.36 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=53.4
Q ss_pred HHHhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeChH----HHHHHHHHHHhCCCCCCcEEEEEc------c
Q 015038 55 VIENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEASE----MAEYARKLIAGNPSLGERITVIKG------K 121 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s~----~~~~a~~~~~~n~~l~~~i~vi~~------d 121 (414)
+.+.....++.+||-+|+ | .|.++..+|++ |++.|..++.++ ..+.++ ..+ . + .++.. +
T Consensus 159 l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lG-a-~--~vi~~~~~~~~~ 230 (357)
T 1zsy_A 159 LMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLG-A-E--HVITEEELRRPE 230 (357)
T ss_dssp HHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTT-C-S--EEEEHHHHHSGG
T ss_pred HHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcC-C-c--EEEecCcchHHH
Confidence 333345567899999997 4 48888888876 876555555542 223333 332 1 1 22322 1
Q ss_pred cccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 122 VEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 122 ~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+.... ..+|+|+-. .+ . ... ....+.|+++|+++..
T Consensus 231 ~~~~~~~~~~~Dvvid~-~g----~----~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 231 MKNFFKDMPQPRLALNC-VG----G----KSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp GGGTTSSSCCCSEEEES-SC----H----HHH-HHHHTTSCTTCEEEEC
T ss_pred HHHHHhCCCCceEEEEC-CC----c----HHH-HHHHHhhCCCCEEEEE
Confidence 2221111 148999842 11 1 112 2346899999998754
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=7.6 Score=36.05 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred CCCCCEEEEECCCc--c---HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-------
Q 015038 61 DFIGRVVVDVGAGS--G---ILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGt--G---~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------- 127 (414)
..+++++|-.|++. | .++..+++.|+ +|+.++.++ ..+.+++..... .++.++.+|+.+...
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEEL----GAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHH----TCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc----CCceEEECCCCCHHHHHHHHHH
Confidence 35789999999873 3 34566777787 599999884 344444444332 258899999987521
Q ss_pred ----CCceeEEEEcC
Q 015038 128 ----PEKADILISEP 138 (414)
Q Consensus 128 ----~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 103 ~~~~~g~iD~lVnnA 117 (293)
T 3grk_A 103 LEKKWGKLDFLVHAI 117 (293)
T ss_dssp HHHHTSCCSEEEECC
T ss_pred HHHhcCCCCEEEECC
Confidence 14789999764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.31 E-value=2 Score=40.63 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=57.5
Q ss_pred HhcCCCCCCEEEEEC-CCc-cHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccc-cc-CCCce
Q 015038 57 ENRADFIGRVVVDVG-AGS-GILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEE-VE-LPEKA 131 (414)
Q Consensus 57 ~~~~~~~~~~VLDiG-cGt-G~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~~-~~~~f 131 (414)
+.....++.+||-+| +|. |.++..+|++ |+ +|++++.++..+.+++. + .. .++..+-.+ +. .-..+
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~l----G-a~---~~i~~~~~~~~~~~~~g~ 216 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKAL----G-AE---QCINYHEEDFLLAISTPV 216 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHHH----T-CS---EEEETTTSCHHHHCCSCE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHHc----C-CC---EEEeCCCcchhhhhccCC
Confidence 445567889999997 665 8888888876 77 79999865545555442 2 21 233322222 11 11579
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+|+-.. + . ..+ ....+.|+++|+++.
T Consensus 217 D~v~d~~-g----~----~~~-~~~~~~l~~~G~iv~ 243 (321)
T 3tqh_A 217 DAVIDLV-G----G----DVG-IQSIDCLKETGCIVS 243 (321)
T ss_dssp EEEEESS-C----H----HHH-HHHGGGEEEEEEEEE
T ss_pred CEEEECC-C----c----HHH-HHHHHhccCCCEEEE
Confidence 9998521 1 1 222 556789999999874
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.30 E-value=1.5 Score=40.49 Aligned_cols=74 Identities=19% Similarity=0.191 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
.++++++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+ .++..+.+|+.+..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG---YDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT---CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 4689999999998874 4666777788 69999998 45555555555543 46888999987742
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
.-++.|++|.+.
T Consensus 82 ~~~G~iDiLVNNA 94 (255)
T 4g81_D 82 AEGIHVDILINNA 94 (255)
T ss_dssp HTTCCCCEEEECC
T ss_pred HHCCCCcEEEECC
Confidence 125799999864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.23 E-value=0.91 Score=43.82 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=56.7
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccc-cc--cCCCcee
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE-EV--ELPEKAD 132 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~-~~--~~~~~fD 132 (414)
....++.+||-+|+|. |.++..+|++ |+ +|++++.+ +.++.+++. + . + .++..+-. ++ ...+.+|
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~v~~~~~~~~~~~~~~~~~D 245 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----G-A-D--HYIATLEEGDWGEKYFDTFD 245 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----T-C-S--EEEEGGGTSCHHHHSCSCEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----C-C-C--EEEcCcCchHHHHHhhcCCC
Confidence 4456789999999975 7777777775 77 69999988 466666652 1 1 1 22322111 11 1115799
Q ss_pred EEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 133 ILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 133 vIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|+-..-.. ... .+....+.|+++|+++..
T Consensus 246 ~vid~~g~~---~~~----~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 246 LIVVCASSL---TDI----DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEEECCSCS---TTC----CTTTGGGGEEEEEEEEEC
T ss_pred EEEECCCCC---cHH----HHHHHHHHhcCCCEEEEe
Confidence 999533220 001 112345789999998753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=87.19 E-value=2.5 Score=40.45 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHhcCCCCC--CEEEEECCC--ccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 55 VIENRADFIG--RVVVDVGAG--SGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 55 i~~~~~~~~~--~~VLDiGcG--tG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
+.+.....++ ++||-.|++ .|..+..+++ .|+++|++++.++ .++.+++. .+ . . .++..+-.++.
T Consensus 150 l~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g-~--~-~~~d~~~~~~~~~ 222 (357)
T 2zb4_A 150 IQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LG-F--D-AAINYKKDNVAEQ 222 (357)
T ss_dssp HHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SC-C--S-EEEETTTSCHHHH
T ss_pred HHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cC-C--c-eEEecCchHHHHH
Confidence 3344455678 999999983 3666555555 4776799999984 44444431 22 1 1 22221111110
Q ss_pred ----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 ----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+++.+. + . ..+....+.|+++|+++..
T Consensus 223 ~~~~~~~~~d~vi~~~-G-----~----~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 223 LRESCPAGVDVYFDNV-G-----G----NISDTVISQMNENSHIILC 259 (357)
T ss_dssp HHHHCTTCEEEEEESC-C-----H----HHHHHHHHTEEEEEEEEEC
T ss_pred HHHhcCCCCCEEEECC-C-----H----HHHHHHHHHhccCcEEEEE
Confidence 112699999642 2 1 2345566899999998753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.16 E-value=2.9 Score=39.91 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCCCCCEEEEECCC--ccHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEE-ccccccc------CC
Q 015038 60 ADFIGRVVVDVGAG--SGILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIK-GKVEEVE------LP 128 (414)
Q Consensus 60 ~~~~~~~VLDiGcG--tG~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~-~d~~~~~------~~ 128 (414)
...++++||.+|++ .|.....+++ .|+ +|++++.+ +.++.+++ .+ . . .++. .+-.++. ..
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g-~--~-~~~d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IG-G--E-VFIDFTKEKDIVGAVLKATD 236 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TT-C--C-EEEETTTCSCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cC-C--c-eEEecCccHhHHHHHHHHhC
Confidence 45678999999983 4666666665 477 79999987 45555543 22 1 1 2222 1111110 01
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+|+|+...- . ...+..+.+.|+++|+++..
T Consensus 237 ~~~D~vi~~~g-----~----~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 237 GGAHGVINVSV-----S----EAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp SCEEEEEECSS-----C----HHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCEEEECCC-----c----HHHHHHHHHHHhcCCEEEEE
Confidence 26999996431 1 23456667899999998754
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.94 E-value=3.2 Score=37.75 Aligned_cols=73 Identities=27% Similarity=0.267 Sum_probs=49.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEE-eCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAV-EAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gv-D~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.+ +.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKL---GRSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTT---TSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 578899999988874 4566667788 58877 555 4454444444442 3568899999987531
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 82 ~~~g~id~lv~nA 94 (259)
T 3edm_A 82 DKFGEIHGLVHVA 94 (259)
T ss_dssp HHHCSEEEEEECC
T ss_pred HHhCCCCEEEECC
Confidence 03789999764
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=0.69 Score=43.80 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-cccccc--CCCceeEEEE
Q 015038 64 GRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-KVEEVE--LPEKADILIS 136 (414)
Q Consensus 64 ~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~~--~~~~fDvIis 136 (414)
+. ||-.|+ | .|.++..+|++ |+ +|++++.+ +-++.+++. + . + .++.. +..... ..+.+|+|+-
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~vi~~~~~~~~~~~~~~~~d~v~d 217 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----G-A-N--RILSRDEFAESRPLEKQLWAGAID 217 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----T-C-S--EEEEGGGSSCCCSSCCCCEEEEEE
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----C-C-C--EEEecCCHHHHHhhcCCCccEEEE
Confidence 35 999997 4 48888888876 77 79999987 466666552 1 1 1 12221 111111 1257999884
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. .+ . . .+....+.|+++|+++..
T Consensus 218 ~-~g-----~---~-~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 218 T-VG-----D---K-VLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp S-SC-----H---H-HHHHHHHTEEEEEEEEEC
T ss_pred C-CC-----c---H-HHHHHHHHHhcCCEEEEE
Confidence 2 21 1 1 455667899999998754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.73 E-value=3.5 Score=38.03 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-cC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-EL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-~~--------- 127 (414)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ ..++.++.+|+.+. ..
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~v~~~~~~~~ 86 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN--HENVVFHQLDVTDPIATMSSLADFIK 86 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CCceEEEEccCCCcHHHHHHHHHHHH
Confidence 357899999988763 4555666687 69999998 45544444454432 35799999999875 21
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 87 ~~~g~iD~lv~nA 99 (311)
T 3o26_A 87 THFGKLDILVNNA 99 (311)
T ss_dssp HHHSSCCEEEECC
T ss_pred HhCCCCCEEEECC
Confidence 14799999864
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=86.73 E-value=2.3 Score=38.66 Aligned_cols=73 Identities=21% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----C----
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----P---- 128 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~---- 128 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+... ..++.++.+|+.+... .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 467899999998874 4556667788 69999998 4555555555543 3579999999977521 0
Q ss_pred -CceeEEEEcC
Q 015038 129 -EKADILISEP 138 (414)
Q Consensus 129 -~~fDvIis~~ 138 (414)
+++|++|.+.
T Consensus 81 ~g~id~lv~nA 91 (252)
T 3h7a_A 81 HAPLEVTIFNV 91 (252)
T ss_dssp HSCEEEEEECC
T ss_pred hCCceEEEECC
Confidence 4789999764
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=86.69 E-value=0.64 Score=50.02 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCEEEEECCCccHHHHHHHHcC------CCeEEEEeChHHH-HHHHHH
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG------AKHVYAVEASEMA-EYARKL 104 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g------~~~V~gvD~s~~~-~~a~~~ 104 (414)
..+|||+.||.|.++.-+.++| ..-+.|+|+++.+ +.-+.|
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence 3489999999999999888876 4578999999644 443443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.65 E-value=9.1 Score=35.05 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS--EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s--~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+... ..++.++.+|+.+...
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQA---GGRAVAIRADNRDAEAIEQAIRET 103 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHHH
Confidence 3578999999998764 4566667788 58888664 3444444444443 3578999999987531
Q ss_pred ---CCceeEEEEcCCcccc-----CChhhH-----------HHHHHHHHhccCCCeEEEcc
Q 015038 128 ---PEKADILISEPMGTLL-----VNERML-----------ETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~l-----~~e~~l-----------~~~l~~~~r~LkpgG~lip~ 169 (414)
-++.|++|.+.-.... .....+ -.+.+.+.+.++++|.++..
T Consensus 104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 1378999976421110 011111 23455666777777776654
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=86.52 E-value=0.88 Score=45.06 Aligned_cols=43 Identities=14% Similarity=-0.169 Sum_probs=33.0
Q ss_pred CCEEEEECCCccHHHHHHHHcC--CCe----EEEEeChHH-HHHHHHHHH
Q 015038 64 GRVVVDVGAGSGILSLFAAQAG--AKH----VYAVEASEM-AEYARKLIA 106 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g--~~~----V~gvD~s~~-~~~a~~~~~ 106 (414)
.-+|||+.||.|.+++.+.++| ..- |.++|+++. ++.-+.+..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 3489999999999999998887 444 899999964 444455543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=86.43 E-value=7.1 Score=35.60 Aligned_cols=106 Identities=24% Similarity=0.247 Sum_probs=64.6
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS--EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s--~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+... ..++.++.+|+.+...
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKAL---GSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3578899999988764 4556667788 58887764 3444444444443 3578999999987531
Q ss_pred ---CCceeEEEEcCCcccc-----CChhhH-----------HHHHHHHHhccCCCeEEEccc
Q 015038 128 ---PEKADILISEPMGTLL-----VNERML-----------ETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~l-----~~e~~l-----------~~~l~~~~r~LkpgG~lip~~ 170 (414)
-++.|++|.+.-.... .....+ -.+.+.+.+.++++|.++...
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 1368999975321111 011111 134456667777788776543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=1.9 Score=41.53 Aligned_cols=93 Identities=23% Similarity=0.195 Sum_probs=54.0
Q ss_pred CCC-CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc-ccccc-cCCCceeE
Q 015038 60 ADF-IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG-KVEEV-ELPEKADI 133 (414)
Q Consensus 60 ~~~-~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~-~~~~~fDv 133 (414)
... ++.+||-+|+|. |.++..++++ |+ +|++++.++ .++.+++ ..+ . + .++.. +...+ ...+.+|+
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lG-a-~--~vi~~~~~~~~~~~~~g~D~ 247 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLG-A-D--DYVIGSDQAKMSELADSLDY 247 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSC-C-S--CEEETTCHHHHHHSTTTEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcC-C-c--eeeccccHHHHHHhcCCCCE
Confidence 445 788999999875 7777777765 77 799999984 4444442 222 1 1 12221 11111 11247999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+-.. +.. ..+ ....+.|+++|+++..
T Consensus 248 vid~~-g~~----~~~----~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 248 VIDTV-PVH----HAL----EPYLSLLKLDGKLILM 274 (357)
T ss_dssp EEECC-CSC----CCS----HHHHTTEEEEEEEEEC
T ss_pred EEECC-CCh----HHH----HHHHHHhccCCEEEEe
Confidence 98532 211 112 2345789999998754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=2.2 Score=40.72 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=55.4
Q ss_pred cCCCCCCEEEEECCCc--cHHHHHHHH-c-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-----c-C
Q 015038 59 RADFIGRVVVDVGAGS--GILSLFAAQ-A-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-----E-L 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt--G~ls~~~a~-~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-----~-~ 127 (414)
....++++||-.|+|+ |..+..+++ . |+ +|+++|.+ +.++.+++. + . + .++...-.+. . .
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g-~-~--~~~~~~~~~~~~~~~~~~ 236 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----G-A-D--YVINASMQDPLAEIRRIT 236 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHHHT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----C-C-C--EEecCCCccHHHHHHHHh
Confidence 4456789999999984 555555554 4 77 69999988 455665442 1 1 1 1222111111 1 1
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. +.+|+++... + . ...+....+.|+++|.++..
T Consensus 237 ~~~~~d~vi~~~-g----~----~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 237 ESKGVDAVIDLN-N----S----EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TTSCEEEEEESC-C----C----HHHHTTGGGGEEEEEEEEEC
T ss_pred cCCCceEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 1 4799999642 1 1 22345566899999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.87 E-value=4.2 Score=37.07 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=52.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDT---GRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 578899999998874 4566677788 59999998 4555555555443 3579999999987531
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 85 ~~g~id~lv~nA 96 (264)
T 3ucx_A 85 AYGRVDVVINNA 96 (264)
T ss_dssp HTSCCSEEEECC
T ss_pred HcCCCcEEEECC
Confidence 14789999865
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=3.8 Score=39.45 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=50.6
Q ss_pred CCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH----HHHHHHHHHHhCCCCCCcEEEEEcc-ccc-cc-CCCceeEE
Q 015038 64 GRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE----MAEYARKLIAGNPSLGERITVIKGK-VEE-VE-LPEKADIL 134 (414)
Q Consensus 64 ~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~----~~~~a~~~~~~n~~l~~~i~vi~~d-~~~-~~-~~~~fDvI 134 (414)
+++||-+|+|. |.++..+++. |+ +|++++.++ .++.+++. + ...+..+ +.+ +. ..+.+|+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~----g-----a~~v~~~~~~~~~~~~~~~~d~v 250 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEET----K-----TNYYNSSNGYDKLKDSVGKFDVI 250 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHH----T-----CEEEECTTCSHHHHHHHCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHh----C-----CceechHHHHHHHHHhCCCCCEE
Confidence 89999999854 5555555554 87 799999863 44444432 2 1222111 100 00 01469999
Q ss_pred EEcCCccccCChhhHHHHH-HHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVNERMLETYV-IARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l-~~~~r~LkpgG~lip~ 169 (414)
+... + ... .+ ....+.|+++|.++..
T Consensus 251 id~~-g----~~~----~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 251 IDAT-G----ADV----NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EECC-C----CCT----HHHHHHGGGEEEEEEEEEC
T ss_pred EECC-C----ChH----HHHHHHHHHHhcCCEEEEE
Confidence 9642 1 111 23 5566889999998754
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.71 E-value=6.2 Score=35.65 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=49.2
Q ss_pred CCCCCCEEEEECCC--ccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC------
Q 015038 60 ADFIGRVVVDVGAG--SGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL------ 127 (414)
Q Consensus 60 ~~~~~~~VLDiGcG--tG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------ 127 (414)
...++++||-.|++ .|+ ++..+++.|+ +|+.++.++ ..+.+++.....+ ++.++.+|+.+...
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~ 84 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG----SELVFPCDVADDAQIDALFA 84 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC----CcEEEECCCCCHHHHHHHHH
Confidence 34678999999976 442 3555666687 699998873 4444444444432 37888999877531
Q ss_pred -----CCceeEEEEcC
Q 015038 128 -----PEKADILISEP 138 (414)
Q Consensus 128 -----~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 85 ~~~~~~g~id~lv~nA 100 (271)
T 3ek2_A 85 SLKTHWDSLDGLVHSI 100 (271)
T ss_dssp HHHHHCSCEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 14789999764
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.63 E-value=3.9 Score=39.23 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred hcCCCCCCEEEEECCC--ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 58 NRADFIGRVVVDVGAG--SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcG--tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
.....++++||-.|++ .|..+..+++. |+ +|++++.++ .++.+++ .+ . . .++..+-.++ .
T Consensus 165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g-a--~-~~~d~~~~~~~~~~~~~~ 235 (351)
T 1yb5_A 165 SACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NG-A--H-EVFNHREVNYIDKIKKYV 235 (351)
T ss_dssp TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT-C--S-EEEETTSTTHHHHHHHHH
T ss_pred hhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cC-C--C-EEEeCCCchHHHHHHHHc
Confidence 3445678999999973 36666666554 77 799999984 5554443 22 1 1 2222211111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+... +. ..+....+.|+++|+++..
T Consensus 236 ~~~~~D~vi~~~-G~---------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 236 GEKGIDIIIEML-AN---------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp CTTCEEEEEESC-HH---------HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEEECC-Ch---------HHHHHHHHhccCCCEEEEE
Confidence 123699998642 21 1234556889999998754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.61 E-value=7.7 Score=35.96 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H--HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E--MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~--~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ . .++.+.+..... ..++.++.+|+.+...
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEEC---GRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHT---TCCEEECCCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHc---CCcEEEEEecCCCHHHHHHHHHHH
Confidence 468899999988763 4555666787 59998886 2 344444444443 3578999999877421
Q ss_pred ---CCceeEEEEcCCccc-c-----CChhhH-----------HHHHHHHHhccCCCeEEEccc
Q 015038 128 ---PEKADILISEPMGTL-L-----VNERML-----------ETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ---~~~fDvIis~~~~~~-l-----~~e~~l-----------~~~l~~~~r~LkpgG~lip~~ 170 (414)
-+++|++|.+.-... . .....+ -.+.+.+.+.++++|.++...
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 147899997643211 0 011111 234556667788888776543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=85.31 E-value=3.2 Score=41.35 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=46.4
Q ss_pred CCEEEEECCCccHHHHHHHHc----C--CCeEEEEeChH-HHHHHHHHHHhC-CCCCCcEEEEEcccccccCCCcee-EE
Q 015038 64 GRVVVDVGAGSGILSLFAAQA----G--AKHVYAVEASE-MAEYARKLIAGN-PSLGERITVIKGKVEEVELPEKAD-IL 134 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~----g--~~~V~gvD~s~-~~~~a~~~~~~n-~~l~~~i~vi~~d~~~~~~~~~fD-vI 134 (414)
...|+|+|+|+|.|+.-+.+. + ..+++.||+|+ +.+.-++.+... +.+..+|.+.. + +|+.+. +|
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP~~~~g~i 211 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LPERFEGVV 211 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CCSCEEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CCccCceEE
Confidence 469999999999987766543 2 24799999996 555555555431 11334677753 1 344555 67
Q ss_pred EEcCCcccc
Q 015038 135 ISEPMGTLL 143 (414)
Q Consensus 135 is~~~~~~l 143 (414)
++|-+..-+
T Consensus 212 iANE~fDAl 220 (432)
T 4f3n_A 212 VGNEVLDAM 220 (432)
T ss_dssp EEESCGGGS
T ss_pred EeehhhccC
Confidence 776554433
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.26 E-value=0.42 Score=46.13 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=56.1
Q ss_pred HhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 57 ENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
+.....++++||-.|+ | .|.++..+++. |+ +|++++.+ +.++.+++. + . + .++..+-.++.
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----G-a-~--~~~~~~~~~~~~~~~~~ 231 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----G-A-K--RGINYRSEDFAAVIKAE 231 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----C-C-C--EEEeCCchHHHHHHHHH
Confidence 3345567889999953 3 37777777765 77 79999988 456666542 1 1 1 22322211110
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+... +. . .+....+.|+++|.++..
T Consensus 232 ~~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 232 TGQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp HSSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEEC
T ss_pred hCCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEEE
Confidence 134799999642 21 1 234455789999998754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.80 E-value=0.54 Score=44.68 Aligned_cols=93 Identities=18% Similarity=0.080 Sum_probs=54.3
Q ss_pred hcCCCCCCEEEEECC--CccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 58 NRADFIGRVVVDVGA--GSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGc--GtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
.....++++||-.|+ |.|.....+++ .|+ +|++++.++ .++.+++. + . + .++..+-.++ .
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g-~-~--~~~~~~~~~~~~~~~~~~ 205 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----G-A-W--QVINYREEDLVERLKEIT 205 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTTSCHHHHHHHHT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----C-C-C--EEEECCCccHHHHHHHHh
Confidence 344567899999994 33665555555 477 799999984 55655542 1 1 1 1222111111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+++.+. + .. .+..+.+.|+++|+++..
T Consensus 206 ~~~~~D~vi~~~-g-----~~----~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 206 GGKKVRVVYDSV-G-----RD----TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TTCCEEEEEECS-C-----GG----GHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEECC-c-----hH----HHHHHHHHhcCCCEEEEE
Confidence 123699999643 2 11 234456889999998754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.77 E-value=3 Score=39.70 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=55.1
Q ss_pred CCCCCCEEEEECC--CccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------cCC
Q 015038 60 ADFIGRVVVDVGA--GSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-------ELP 128 (414)
Q Consensus 60 ~~~~~~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~~ 128 (414)
...++++||-+|+ |.|.++..++++ |+ +|++++.+ +.++.+++. + . + .++...-.++ ...
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g-a-~--~~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----G-A-D--ETVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTSTTHHHHHHHHTTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----C-C-C--EEEcCCcccHHHHHHHHhCC
Confidence 4567889999998 457777777765 77 79999998 455666542 1 1 1 1222211111 112
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+|+|+... + . . .+....+.|+++|+++..
T Consensus 234 ~~~d~vi~~~-g----~-~----~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 234 KGADKVVDHT-G----A-L----YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TCEEEEEESS-C----S-S----SHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECC-C----H-H----HHHHHHHhhccCCEEEEE
Confidence 4799999643 2 1 1 123445789999988754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=0.92 Score=44.39 Aligned_cols=97 Identities=19% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~ 137 (414)
.++++|+-+|+|. |......++ .|+ +|+++|.++ -++.+++.. + ..+.....+..++. .-..+|+|+..
T Consensus 166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~---g---~~~~~~~~~~~~l~~~l~~aDvVi~~ 238 (377)
T 2vhw_A 166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEF---C---GRIHTRYSSAYELEGAVKRADLVIGA 238 (377)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---T---TSSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhc---C---CeeEeccCCHHHHHHHHcCCCEEEEC
Confidence 5688999999975 544433333 477 799999984 445444432 1 12222222222211 11368999973
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
........... +.....+.+||||+++-
T Consensus 239 ~~~p~~~t~~l---i~~~~l~~mk~g~~iV~ 266 (377)
T 2vhw_A 239 VLVPGAKAPKL---VSNSLVAHMKPGAVLVD 266 (377)
T ss_dssp CCCTTSCCCCC---BCHHHHTTSCTTCEEEE
T ss_pred CCcCCCCCcce---ecHHHHhcCCCCcEEEE
Confidence 31111001000 11233467899998763
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=84.14 E-value=2.5 Score=38.63 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=46.2
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeChH--------------------HHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEASE--------------------MAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s~--------------------~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
++++||-+|||. | ..+..+++.|..+++.+|.+. -++.+.+.+...+ ..-+++.+..
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEEEECS
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CCcEEEEEec
Confidence 357899999984 4 345667778998999999863 4455555554321 1234666655
Q ss_pred ccccccC---CCceeEEEEc
Q 015038 121 KVEEVEL---PEKADILISE 137 (414)
Q Consensus 121 d~~~~~~---~~~fDvIis~ 137 (414)
++.+-.. -..+|+||..
T Consensus 109 ~~~~~~~~~~~~~~DvVi~~ 128 (249)
T 1jw9_B 109 LLDDAELAALIAEHDLVLDC 128 (249)
T ss_dssp CCCHHHHHHHHHTSSEEEEC
T ss_pred cCCHhHHHHHHhCCCEEEEe
Confidence 5542111 1469999973
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.08 E-value=3.9 Score=36.88 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.5
Q ss_pred CCCEEEEECCCccH---HHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----C----
Q 015038 63 IGRVVVDVGAGSGI---LSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----P---- 128 (414)
Q Consensus 63 ~~~~VLDiGcGtG~---ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~---- 128 (414)
++++||-.|++.|+ ++..+++ .|+ +|++++.+ +.++.+.+.+... ..++.++.+|+.+... .
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhc---CCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 46788988866542 3444556 677 69999987 4444444444442 2468899999887521 0
Q ss_pred --CceeEEEEcC
Q 015038 129 --EKADILISEP 138 (414)
Q Consensus 129 --~~fDvIis~~ 138 (414)
+++|+||.+.
T Consensus 79 ~~g~id~li~~A 90 (276)
T 1wma_A 79 EYGGLDVLVNNA 90 (276)
T ss_dssp HHSSEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 3799999753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.06 E-value=0.93 Score=43.37 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=43.2
Q ss_pred CcEEEE-Ecccccc--cCC-CceeEEEEcCCccccC--------ChhhHHHHHHHHHhccCCCeEEEccccee
Q 015038 113 ERITVI-KGKVEEV--ELP-EKADILISEPMGTLLV--------NERMLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 113 ~~i~vi-~~d~~~~--~~~-~~fDvIis~~~~~~l~--------~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
....++ ++|..+. .++ ++||+|+.+|+..... ....+...+..+.++|+|||.+++.....
T Consensus 37 ~~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 37 TTRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp CEEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred ccceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 446788 9998764 233 6899999999854320 11245667788899999999998875543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=83.84 E-value=0.88 Score=45.55 Aligned_cols=44 Identities=34% Similarity=0.281 Sum_probs=32.5
Q ss_pred cCCCCCCEEEEECC-Cc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHH
Q 015038 59 RADFIGRVVVDVGA-GS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARK 103 (414)
Q Consensus 59 ~~~~~~~~VLDiGc-Gt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~ 103 (414)
....++.+||-+|+ |. |.++..+|++ |+ +|++++.+ +-++.+++
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~ 271 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA 271 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh
Confidence 34567889999998 53 7888888876 66 68888887 45666654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=83.75 E-value=2 Score=40.29 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
-+..++.+.....++++||-+|+|- | ..+..+++.|+++|+.++.+ +-++...+.+.... ...++... +..++.
T Consensus 113 G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~-~~~~i~~~--~~~~l~ 189 (283)
T 3jyo_A 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV-GREAVVGV--DARGIE 189 (283)
T ss_dssp HHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH-TSCCEEEE--CSTTHH
T ss_pred HHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc-CCceEEEc--CHHHHH
Confidence 3556666555567889999999972 2 23344556688889999998 44433333333211 11123332 222321
Q ss_pred -CCCceeEEEEcCC
Q 015038 127 -LPEKADILISEPM 139 (414)
Q Consensus 127 -~~~~fDvIis~~~ 139 (414)
....+|+||+..+
T Consensus 190 ~~l~~~DiVInaTp 203 (283)
T 3jyo_A 190 DVIAAADGVVNATP 203 (283)
T ss_dssp HHHHHSSEEEECSS
T ss_pred HHHhcCCEEEECCC
Confidence 1146899997544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.67 E-value=0.76 Score=42.38 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=38.9
Q ss_pred EEEEEcccccc--cC-CCceeEEEEcCCccccCC-----------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 115 ITVIKGKVEEV--EL-PEKADILISEPMGTLLVN-----------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 115 i~vi~~d~~~~--~~-~~~fDvIis~~~~~~l~~-----------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++++|..+. .+ .++||+|+++|+...... ...+...+..+.++|+|||.+++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 46788888654 12 368999999998543210 023566778889999999998765
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=83.66 E-value=5.8 Score=36.88 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCc--cH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 62 FIGRVVVDVGAGS--GI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGt--G~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.++++||-.|+++ |+ ++..+++.|+ +|+.++.++ ..+.+.+.....+ ++.++.+|+.+...
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG----VKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT----CCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC----CeEEEEcCCCCHHHHHHHHHHH
Confidence 5678999999864 43 5666777788 599999883 4444444444322 36788899877531
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 103 ~~~~g~iD~lVnnA 116 (296)
T 3k31_A 103 AEEWGSLDFVVHAV 116 (296)
T ss_dssp HHHHSCCSEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 14789999764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=83.63 E-value=1.2 Score=43.24 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~ 137 (414)
.++++||-+|+|. |.....+++ .|+ +|+++|.+ +-++.+++.... .+..+..+..++. .-..+|+||..
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~~ 237 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGA 237 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEEC
Confidence 3568999999975 544444444 488 89999998 455555554322 2333322222221 01368999964
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.......... -+.....+.++|||.++-
T Consensus 238 ~~~~~~~~~~---li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 238 VLVPGRRAPI---LVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp CCCTTSSCCC---CBCHHHHTTSCTTCEEEE
T ss_pred CCcCCCCCCe---ecCHHHHhhCCCCCEEEE
Confidence 3221100000 001223467899998764
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=1.8 Score=49.10 Aligned_cols=69 Identities=26% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCEEEEECCCccHHHHHHHHcCC-CeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccc---------------c
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGA-KHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEV---------------E 126 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~---------------~ 126 (414)
..+++|+.||.|.+++-+.++|. ..|.++|+++.+ +.-+.+. ....++.+|+.++ .
T Consensus 851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-------p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-------PGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-------TTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------CCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 45899999999999999999997 678999999644 4334332 1234566665422 1
Q ss_pred C--CCceeEEEEcCC
Q 015038 127 L--PEKADILISEPM 139 (414)
Q Consensus 127 ~--~~~fDvIis~~~ 139 (414)
+ .+.+|+|+..++
T Consensus 924 lp~~~~vDvl~GGpP 938 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPP 938 (1330)
T ss_dssp CCCTTTCSEEEECCC
T ss_pred ccccCccceEEecCC
Confidence 1 246899998776
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=83.37 E-value=5.3 Score=36.36 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh----HHHHHHHHHHHhCCCCCCcEEEEEcccccccC------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS----EMAEYARKLIAGNPSLGERITVIKGKVEEVEL------ 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s----~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~------ 127 (414)
..+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~ 83 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQ---GAKVALYQSDLSNEEEVAKLFD 83 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTT---TCEEEEEECCCCSHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHH
Confidence 4578899999988764 3444455577 58888653 2344444444432 3579999999987531
Q ss_pred -----CCceeEEEEcC
Q 015038 128 -----PEKADILISEP 138 (414)
Q Consensus 128 -----~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 84 ~~~~~~g~iD~lvnnA 99 (262)
T 3ksu_A 84 FAEKEFGKVDIAINTV 99 (262)
T ss_dssp HHHHHHCSEEEEEECC
T ss_pred HHHHHcCCCCEEEECC
Confidence 14799999764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.29 E-value=5.8 Score=35.46 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++...+.+... ..++.++.+|+.+...
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEK---GFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999987763 4556666787 69999998 4555555555543 2479999999977521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
.+++|++|.+.
T Consensus 79 ~~~~id~li~~A 90 (247)
T 3lyl_A 79 ENLAIDILVNNA 90 (247)
T ss_dssp TTCCCSEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14689999764
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=83.14 E-value=7.7 Score=38.02 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=44.6
Q ss_pred CCEEEEECCCccHHHHHHHHc--------CCCeEEEEeChHHH-HHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQA--------GAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVEEVELPEKADIL 134 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~--------g~~~V~gvD~s~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvI 134 (414)
+-.|+|+|+|+|.|+.-+.+. ...+++.||+|+.+ +.-++.+.. . ++|.+. .++.+++ ...-+|
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~---~-~~v~W~-~~l~~lp--~~~~~v 153 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG---I-RNIHWH-DSFEDVP--EGPAVI 153 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT---C-SSEEEE-SSGGGSC--CSSEEE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC---C-CCeEEe-CChhhcC--CCCeEE
Confidence 347999999999998776653 12379999999744 433333322 2 256654 3444443 234577
Q ss_pred EEcCCcccc
Q 015038 135 ISEPMGTLL 143 (414)
Q Consensus 135 is~~~~~~l 143 (414)
++|-+...+
T Consensus 154 iANE~fDAl 162 (387)
T 1zkd_A 154 LANEYFDVL 162 (387)
T ss_dssp EEESSGGGS
T ss_pred EeccccccC
Confidence 776554433
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.98 E-value=1.7 Score=42.25 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=50.4
Q ss_pred CCCCEEEEECCCc-cHHHHH-HHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc-CCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGS-GILSLF-AAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE-LPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~-~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-~~~~fDvIis~ 137 (414)
.++++|+-+|+|. |..... +...|+ +|+++|.++ .++.+++.. + ..+.....+..++. .-..+|+|+..
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~---g---~~~~~~~~~~~~l~~~~~~~DvVi~~ 236 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVF---G---GRVITLTATEANIKKSVQHADLLIGA 236 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---T---TSEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhc---C---ceEEEecCCHHHHHHHHhCCCEEEEC
Confidence 4578999999964 433333 333477 799999984 444443321 1 22333322222221 11468999875
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
........ ..-+.+...+.+++||.++-.
T Consensus 237 ~g~~~~~~---~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 237 VLVPGAKA---PKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp CC----------CCSCHHHHTTSCTTCEEEEC
T ss_pred CCCCcccc---chhHHHHHHHhhcCCCEEEEE
Confidence 43211000 001123445778999987643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=82.92 E-value=6.7 Score=37.66 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=57.0
Q ss_pred HhcCCCCCCEEEEEC-CC-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc------
Q 015038 57 ENRADFIGRVVVDVG-AG-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE------ 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiG-cG-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------ 126 (414)
+.....++++||-.| +| .|.++..+++. |+ +|++++.+ +.++.+++ .+ . + .++..+-.++.
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~G-a-~--~~~~~~~~~~~~~~~~~ 227 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LG-C-D--RPINYKTEPVGTVLKQE 227 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT-C-S--EEEETTTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cC-C-c--EEEecCChhHHHHHHHh
Confidence 333456789999999 34 48887777775 77 79999998 45555554 22 1 1 22322211110
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-.. + . ..+..+.+.|+++|.++..
T Consensus 228 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 228 YPEGVDVVYESV-G----G-----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp CTTCEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEEE
Confidence 124699999642 2 1 2345556889999988653
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.92 E-value=4.6 Score=38.12 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+...+ ...++.++.+|+.+...
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEG-SGPEVMGVQLDVASREGFKMAADEVEA 83 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999988764 4555666787 69999998 45554444444332 23479999999987521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+.+|++|.+.
T Consensus 84 ~~g~id~lv~nA 95 (319)
T 3ioy_A 84 RFGPVSILCNNA 95 (319)
T ss_dssp HTCCEEEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14689999764
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=82.10 E-value=10 Score=35.32 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+.+.+.+.....++++||-+|+|. | ..+..+++.|+.+|+.++.+ +-++...+.+... ..+... +..++.
T Consensus 113 ~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~----~~~~~~--~~~~l~- 185 (281)
T 3o8q_A 113 LVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY----GEVKAQ--AFEQLK- 185 (281)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGG----SCEEEE--EGGGCC-
T ss_pred HHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhcc----CCeeEe--eHHHhc-
Confidence 445554443446789999999972 2 22334455687789999998 4443333333321 124444 333332
Q ss_pred CCceeEEEEcCC
Q 015038 128 PEKADILISEPM 139 (414)
Q Consensus 128 ~~~fDvIis~~~ 139 (414)
..+|+||+..+
T Consensus 186 -~~aDiIInaTp 196 (281)
T 3o8q_A 186 -QSYDVIINSTS 196 (281)
T ss_dssp -SCEEEEEECSC
T ss_pred -CCCCEEEEcCc
Confidence 67999997544
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=14 Score=33.71 Aligned_cols=73 Identities=32% Similarity=0.373 Sum_probs=47.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ + .++.+.+.+... ..++.++.+|+.+...
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKN---GSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999987763 3445556687 69999887 3 344443444432 2468899999876421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 103 ~~~g~iD~lv~~A 115 (283)
T 1g0o_A 103 KIFGKLDIVCSNS 115 (283)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 13689999764
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=81.54 E-value=3.7 Score=38.69 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh
Q 015038 62 FIGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS 95 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s 95 (414)
.+..+||-||||. | ..+..++++|..+++.+|.+
T Consensus 34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D 69 (292)
T 3h8v_A 34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD 69 (292)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678999999995 5 45677888899999999964
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.52 E-value=3.9 Score=37.70 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIAS---GGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHT---TCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc---CCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 578899999988763 4555667788 69999998 4444444444443 3578999999977531
Q ss_pred CCceeEEEEcC
Q 015038 128 PEKADILISEP 138 (414)
Q Consensus 128 ~~~fDvIis~~ 138 (414)
.+++|++|.+.
T Consensus 107 ~g~iD~lvnnA 117 (275)
T 4imr_A 107 IAPVDILVINA 117 (275)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 04789999764
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=81.48 E-value=2.9 Score=39.93 Aligned_cols=91 Identities=24% Similarity=0.273 Sum_probs=55.3
Q ss_pred HhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------
Q 015038 57 ENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV------- 125 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------- 125 (414)
+.....++++||-+|+ | .|.++..++++ |+ +|+++ .+ +-++.+++. + . .. +. +-.++
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~l----G-a--~~--i~-~~~~~~~~~~~~ 211 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDL----G-A--TP--ID-ASREPEDYAAEH 211 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHH----T-S--EE--EE-TTSCHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHc----C-C--CE--ec-cCCCHHHHHHHH
Confidence 4445567899999994 4 37777777776 77 79999 66 455555542 2 1 11 32 22222
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+|+-.. + . ..+....+.|+++|.++..
T Consensus 212 ~~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 212 TAGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HTTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEES
T ss_pred hcCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEEE
Confidence 1124799998532 2 1 1334555789999998754
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=81.32 E-value=3.6 Score=38.32 Aligned_cols=89 Identities=19% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccc-cccc-CCCceeEE
Q 015038 61 DFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKV-EEVE-LPEKADIL 134 (414)
Q Consensus 61 ~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~-~~~~fDvI 134 (414)
..++++||-+|+ | .|.++..+++. |+ +|++++.+ +.++.+++ .+ . + .++..+- .++. .-+.+|+|
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~g-a-~--~~~~~~~~~~~~~~~~~~d~v 193 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LG-A-E--EAATYAEVPERAKAWGGLDLV 193 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TT-C-S--EEEEGGGHHHHHHHTTSEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cC-C-C--EEEECCcchhHHHHhcCceEE
Confidence 567899999998 3 47777777765 77 79999997 45555543 22 1 1 2232211 1111 01579999
Q ss_pred EEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+. .+. . .+....+.|+++|+++..
T Consensus 194 id--~g~-----~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 194 LE--VRG-----K----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp EE--CSC-----T----THHHHHTTEEEEEEEEEC
T ss_pred EE--CCH-----H----HHHHHHHhhccCCEEEEE
Confidence 86 332 1 124456889999988653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=81.10 E-value=5.1 Score=36.61 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=44.6
Q ss_pred CCCEEEEECCCc-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHhCCCCCCcEEEEEc
Q 015038 63 IGRVVVDVGAGS-G-ILSLFAAQAGAKHVYAVEAS--------------------EMAEYARKLIAGNPSLGERITVIKG 120 (414)
Q Consensus 63 ~~~~VLDiGcGt-G-~ls~~~a~~g~~~V~gvD~s--------------------~~~~~a~~~~~~n~~l~~~i~vi~~ 120 (414)
++.+||-+|||. | ..+..+++.|.++++.+|.+ +-++.+++++...+ ..-+++.+..
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~v~~~~~ 105 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PDIQLTALQQ 105 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEEEECS
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEEec
Confidence 467999999985 5 45667788899999999763 22444444444321 2234565554
Q ss_pred ccccccC---CCceeEEEE
Q 015038 121 KVEEVEL---PEKADILIS 136 (414)
Q Consensus 121 d~~~~~~---~~~fDvIis 136 (414)
++..-.. -..+|+||.
T Consensus 106 ~~~~~~~~~~~~~~DvVi~ 124 (251)
T 1zud_1 106 RLTGEALKDAVARADVVLD 124 (251)
T ss_dssp CCCHHHHHHHHHHCSEEEE
T ss_pred cCCHHHHHHHHhcCCEEEE
Confidence 4432111 136899996
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=4.3 Score=38.88 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=53.7
Q ss_pred hcCCCCCCEEEEECC--CccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 58 NRADFIGRVVVDVGA--GSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 58 ~~~~~~~~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++. + . . .++..+-.++ .
T Consensus 157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g-~--~-~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----G-A--A-AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----T-C--S-EEEETTTSCHHHHHHHHT
T ss_pred hcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----C-C--c-EEEecCChHHHHHHHHHh
Confidence 344567889999984 346666555554 76 79999988 455655432 1 1 1 1222211111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+++... +. + .+....+.|+++|.++..
T Consensus 228 ~~~~~d~vi~~~-G~----~-----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 228 KGAGVNLILDCI-GG----S-----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTSCEEEEEESS-CG----G-----GHHHHHHHEEEEEEEEEC
T ss_pred cCCCceEEEECC-Cc----h-----HHHHHHHhccCCCEEEEE
Confidence 124699999643 21 1 123445789999998753
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.86 E-value=6.5 Score=35.95 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.+++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+... ..++.++.+|+.+..
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREK---GLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999987663 3455566687 69999998 4444444444432 246889999987642
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..+++|++|.+.
T Consensus 95 ~~~g~id~lv~nA 107 (273)
T 1ae1_A 95 VFDGKLNILVNNA 107 (273)
T ss_dssp HTTSCCCEEEECC
T ss_pred HcCCCCcEEEECC
Confidence 115789999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=3.4 Score=39.84 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=52.9
Q ss_pred CCC-CCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc-ccccc-cCCCceeE
Q 015038 60 ADF-IGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG-KVEEV-ELPEKADI 133 (414)
Q Consensus 60 ~~~-~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~-~~~~~fDv 133 (414)
... ++.+||-+|+|. |.++..++++ |+ +|++++.++ .++.+++ ..+ .. .++.. +...+ ...+.+|+
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lG---a~-~v~~~~~~~~~~~~~~~~D~ 254 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFG---AD-SFLVSRDQEQMQAAAGTLDG 254 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSC---CS-EEEETTCHHHHHHTTTCEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcC---Cc-eEEeccCHHHHHHhhCCCCE
Confidence 345 788999999875 6676666665 76 799999874 4444432 222 11 22221 11111 11247999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+-.. +.. ..+ ....+.|+++|.++..
T Consensus 255 vid~~-g~~----~~~----~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 255 IIDTV-SAV----HPL----LPLFGLLKSHGKLILV 281 (366)
T ss_dssp EEECC-SSC----CCS----HHHHHHEEEEEEEEEC
T ss_pred EEECC-CcH----HHH----HHHHHHHhcCCEEEEE
Confidence 99632 211 112 2334678999998754
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.63 E-value=5.1 Score=36.19 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+........++.++.+|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999988763 4556666788 69999998 45544444333321112568899999987531
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14799999764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.22 E-value=9.1 Score=31.12 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCEEEEECCCc-cH-HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCceeEEE
Q 015038 64 GRVVVDVGAGS-GI-LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEKADILI 135 (414)
Q Consensus 64 ~~~VLDiGcGt-G~-ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~fDvIi 135 (414)
..+|+-+|||. |. ++..+.+.|. .|+++|.++ .++.+++ .+ +.++.+|..+... .+.+|+|+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----RG-----VRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----TT-----CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----cC-----CCEEECCCCCHHHHHhcCcccCCEEE
Confidence 35788999986 43 3445555677 599999995 5554442 22 6788898876421 15789988
Q ss_pred EcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 136 SEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 136 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
+... +...-..+ -...+.+.|+..++
T Consensus 77 ~~~~-----~~~~n~~~-~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 77 LTIP-----NGYEAGEI-VASARAKNPDIEII 102 (140)
T ss_dssp ECCS-----CHHHHHHH-HHHHHHHCSSSEEE
T ss_pred EECC-----ChHHHHHH-HHHHHHHCCCCeEE
Confidence 6322 21111112 22345567777654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=80.04 E-value=6.8 Score=35.41 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.++++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+... ..++.++.+|+.+..
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSK---GFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999987653 3455566687 69999988 4444433334332 246889999987742
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..+++|++|.+.
T Consensus 83 ~~~g~id~lv~~A 95 (260)
T 2ae2_A 83 HFHGKLNILVNNA 95 (260)
T ss_dssp HTTTCCCEEEECC
T ss_pred HcCCCCCEEEECC
Confidence 114789999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 414 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-76 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-75 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-68 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 7e-07 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 4e-06 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-05 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 4e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 4e-04 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 5e-04 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 8e-04 | |
| d1i4wa_ | 322 | c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake | 0.002 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.003 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 0.003 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 237 bits (606), Expect = 2e-76
Identities = 111/337 (32%), Positives = 167/337 (49%), Gaps = 25/337 (7%)
Query: 32 YGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYA 91
Y + ML+D VRT TY ++ NR F +VV+DVG+G+GIL +FAA+AGA+ V
Sbjct: 2 YAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIG 61
Query: 92 VEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI-SEPMGTLLVNERMLE 150
+E S +++YA K++ N L +T+IKGKVEEVELP + +I SE MG L E ML
Sbjct: 62 IECSSISDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 151 TYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLYGS 210
T + ARD++L P G +FP +++ D K +W +N YG D++ +
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYK---DYKIHWW--ENVYGFDMSCIKDV 175
Query: 211 AFHGYFSQPVVDAFDP-RLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGLA 269
A +P+VD DP +L+ + +D K E+ P VH L
Sbjct: 176 AIK----EPLVDVVDPKQLVTNACLIKEVDIYTVKVED-LTFTSPFCLQVKRNDYVHALV 230
Query: 270 CWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSY 329
+F++ F + +T+P +P THW Q + L V G+EI G + M ++ +
Sbjct: 231 AYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNR 290
Query: 330 TIYLTLSVKMWGPGADQGGILQTSSCKLDLKEPYYRM 366
+ T+ + G L SC D YRM
Sbjct: 291 DLDFTIDLDFKGQ-------LCELSCSTD-----YRM 315
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 235 bits (600), Expect = 3e-75
Identities = 106/321 (33%), Positives = 161/321 (50%), Gaps = 13/321 (4%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
YF Y + MLQD VRT +Y A+I+N+ F ++V+DVG G+GILS+FAA+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 88 HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPE-KADILISEPMGTLLVNE 146
HV V+ S + E A++L+ N ++IT+++GK+E+V LP K DI+ISE MG L+ E
Sbjct: 63 HVIGVDMSSIIEMAKELVELN-GFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYE 121
Query: 147 RMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTP 206
M++T + ARD +LV G +FP IH+A D E N Q+ YG D +P
Sbjct: 122 SMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLN-----YWQDVYGFDYSP 176
Query: 207 LYGSAFHGYFSQPVVDAFDPRLLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVH 266
H +P+VD + + + + T + + K + ++
Sbjct: 177 FVPLVLH----EPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMIN 232
Query: 267 GLACWFDVLFDGSTVQR--WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAH 324
G+ WFD++F +R +T P AP THW Q L G I G+L +
Sbjct: 233 GIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPN 292
Query: 325 SAQSYTIYLTLSVKMWGPGAD 345
+ + + +S K G D
Sbjct: 293 EKNNRDLNIKISYKFESNGID 313
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 217 bits (552), Expect = 3e-68
Identities = 95/313 (30%), Positives = 160/313 (51%), Gaps = 14/313 (4%)
Query: 29 FHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKH 88
F YG + ML+D +RT +Y + +N F +VV+DVG G+GILS+FAA+AGAK
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 89 VYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI-SEPMGTLLVNER 147
V V+ SE+ A +I N L + IT+IKGK+EEV LP + +I SE MG L+ E
Sbjct: 61 VLGVDQSEILYQAMDIIRLN-KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 119
Query: 148 MLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPL 207
ML++ + A++++L G ++P + I + SD + + YG ++ +
Sbjct: 120 MLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADR-----IAFWDDVYGFKMSCM 174
Query: 208 YGSAFHGYFSQPVVDAFDPRLLVA-PAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVH 266
+ + VV+ DP+ L++ P ID T +L E + +
Sbjct: 175 KKAVIP----EAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDFTLKITRTSMCT 229
Query: 267 GLACWFDVLFDGSTVQR-WLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHS 325
+A +FD+ F+ + R +T P + THW Q +L +P V AG+ + G++ + +
Sbjct: 230 AIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNK 289
Query: 326 AQSYTIYLTLSVK 338
++ +TL++
Sbjct: 290 KDPRSLTVTLTLN 302
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 47.9 bits (113), Expect = 7e-07
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 33/182 (18%)
Query: 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNPSLGERITVIKGKVE 123
+VVD+ AG G LSL A G V A+E ++ + I N +R++
Sbjct: 109 ELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-EDRMSAYNMDNR 167
Query: 124 EVELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183
+ AD ++ MG ++ + + + IH E L
Sbjct: 168 DFPGENIADRIL---MGYVVRTHEFIPKAL-----------SIAKDGAIIHYHNTVPEKL 213
Query: 184 FVEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPRLLVAPAVSH-VIDFKK 242
+ F + YG D+ L Y AP V H V+D +
Sbjct: 214 MPREPFE-TFKRITKEYGYDVEKLNELKIKRY---------------APGVWHVVLDLRV 257
Query: 243 TK 244
K
Sbjct: 258 FK 259
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.1 bits (106), Expect = 4e-06
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMA-EYARKLIAGNP 109
Y+ I N + GR V+D G G+GIL+ + GA+ V A + A E A++
Sbjct: 36 YFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---- 91
Query: 110 SLGERITVIKGKVEEVELPEKADILISEP 138
+ + V E+ K D I P
Sbjct: 92 ---GGVNFMVADVS--EISGKYDTWIMNP 115
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVE 123
G V+D+G G G L +AG Y V+ +E++ ++ A N ++
Sbjct: 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY 84
Query: 124 EVELPEK---ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170
+ I L+ R L P G +V
Sbjct: 85 GRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPS 110
+ GR ++D+G+G + L +A + + + + E + + + P
Sbjct: 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG 102
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 53 AAVIENRAD-FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASE-MAEYARKLIA 106
A+ I R G +++VG GSG +S + A G + VE E + A ++
Sbjct: 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 18/101 (17%), Positives = 33/101 (32%)
Query: 28 YFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAK 87
Y + Q + RT Y A ++ V+DV G+G+ S+ + G
Sbjct: 21 YADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFS 80
Query: 88 HVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128
+ +M +YA K + + + L
Sbjct: 81 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (92), Expect = 5e-04
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 5/78 (6%)
Query: 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGK 121
G +D+G+G G + AA G + E + ++ L +R + +
Sbjct: 217 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE---ELKKRCKLYGMR 273
Query: 122 VEEVELPEKADILISEPM 139
+ VE K + + +
Sbjct: 274 LNNVEFSLKKSFVDNNRV 291
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 37.9 bits (87), Expect = 8e-04
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 64 GRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVE 123
V VDVG G+G ++L A + E + + LG+ +T+++G
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAP 92
Query: 124 EV--ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDE 181
E ++P+ ++ G L+ + L P G++ + + + E
Sbjct: 93 EALCKIPDIDIAVVGGSGG-------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAME 145
Query: 182 YL 183
L
Sbjct: 146 CL 147
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.7 bits (87), Expect = 0.002
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 19/133 (14%)
Query: 30 HYYGQ-LLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AK 87
+YG L + + + V+D+ G GI S +
Sbjct: 13 FFYGFKYLWNPTVYNKIFDK----LDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPR 68
Query: 88 HVYAVEA-SEMAEYARKLIAGNPSLGERITVIKGKVEEV----ELPEKADILISEPMGTL 142
+E S + ++ G + ++K + L ++ I + E +
Sbjct: 69 QYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSD 123
Query: 143 LVNERMLETYVIA 155
+N++ L +A
Sbjct: 124 HINDKFL---TVA 133
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 25 AKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA 84
+ Y Y + + ++ G ++D+G+G I + AA
Sbjct: 13 PRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACD 72
Query: 85 GAKHVYAVEASE-MAEYARKLIAGNP 109
+ + + ++ E K + P
Sbjct: 73 SFQDITLSDFTDRNREELEKWLKKEP 98
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 36.7 bits (84), Expect = 0.003
Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 43 QDYVRTGTYYAAVIENRADFIGRV--------VVDVGAGSGILSLFAAQAGAKHVYAVEA 94
+ G + I + V V+++ +G+ SL AA AGA+ V+A
Sbjct: 105 TAFRHVG-VFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVT-HVDA 162
Query: 95 SEMA-EYARKLIAGNPSLGERITVIKGKVEE-----VELPEKADILISEP--------MG 140
S+ A +A++ I I + DI++++P
Sbjct: 163 SKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGE 222
Query: 141 TLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIANKA 191
+ + + I R+ + + I + +S L E A
Sbjct: 223 VWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGA 273
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.003
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 64 GRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKG 120
R V+ G + A ++ S E+ +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTA 61
Query: 121 KVEEVELPEKADILI 135
+V ++ +K D ++
Sbjct: 62 EVGKLLGDQKVDAIL 76
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 414 | |||
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.77 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.71 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.7 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.7 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.69 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.65 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.64 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.63 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.62 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.61 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.58 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.58 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.57 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.57 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.57 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.56 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.55 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.52 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.52 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.5 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.48 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.45 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.43 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.42 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.42 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.39 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.38 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.37 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.37 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.35 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.35 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.35 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.34 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.31 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.3 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.3 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.3 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.29 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.29 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.29 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.29 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.27 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.25 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.25 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.24 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.22 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.18 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.14 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.13 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.12 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.11 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.02 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.97 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.97 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.93 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.85 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.84 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.78 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.72 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.7 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.68 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.67 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.65 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.58 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.58 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.55 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.5 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.46 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.46 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.45 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.45 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.44 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.41 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.32 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.31 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.23 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.2 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.07 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.06 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.05 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.96 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.69 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.56 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.55 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.24 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.22 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.81 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.78 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.61 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.58 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.58 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.57 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.3 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.26 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.2 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.88 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.61 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.01 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.94 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.91 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.91 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.89 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.87 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.63 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.22 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.0 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.85 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.72 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.72 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.03 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.62 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.53 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 92.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.11 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.89 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.88 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.74 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.66 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.57 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 91.37 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.25 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.21 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.12 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.83 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.8 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.75 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.69 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.98 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.68 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.61 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.41 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.24 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 89.04 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 88.96 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 88.71 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.63 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.44 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.04 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.86 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.01 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.89 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.75 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 86.43 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.24 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.12 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.09 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.07 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 84.97 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 84.39 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.39 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.29 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.2 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 82.96 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.67 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 82.59 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 82.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.15 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 82.01 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 81.81 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.66 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.98 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 80.93 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 80.37 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-56 Score=434.10 Aligned_cols=307 Identities=34% Similarity=0.579 Sum_probs=276.3
Q ss_pred hhHHHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHH
Q 015038 26 KMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLI 105 (414)
Q Consensus 26 ~~yf~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~ 105 (414)
+.||++|+++..|.+||+|..|+..|+++|.++....++++|||||||+|.+++++|++|+++|+|+|.|++++.|+++.
T Consensus 1 d~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~ 80 (328)
T d1g6q1_ 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELV 80 (328)
T ss_dssp CCCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHH
T ss_pred CCcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 36899999999999999999999999999998877789999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhH
Q 015038 106 AGNPSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184 (414)
Q Consensus 106 ~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~ 184 (414)
+.++ +.++++++++++.+++++ ++||+|+++++++++.++..++.++.++.|+|||||+++|+.+++|++|++...++
T Consensus 81 ~~~~-~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~ 159 (328)
T d1g6q1_ 81 ELNG-FSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYK 159 (328)
T ss_dssp HHTT-CTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHH
T ss_pred HHhC-ccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHH
Confidence 9987 889999999999999876 68999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecc
Q 015038 185 VEIANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGT 263 (414)
Q Consensus 185 ~e~~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g 263 (414)
.+. ..+|. +++|+|++++.... +.+|.++.+++. .++.|..+..+||.+.+.+++ .+..++++++.++|
T Consensus 160 ~~~---~~~~~--~~~G~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~g 229 (328)
T d1g6q1_ 160 DEK---LNYWQ--DVYGFDYSPFVPLV----LHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSNFKLTAKRQD 229 (328)
T ss_dssp HHH---HHHTT--CBTTBCCTTHHHHH----TTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEEEEEBCSSC
T ss_pred HHh---ccccc--cccccccchhhhhh----ccCcEEEEecCceeecCceeEEEecccccchhhc-ceeeeEEEEecCCc
Confidence 653 45786 89999999988765 356888887775 556688999999999988887 57788999999999
Q ss_pred eeeeEEEEEEEEecCC--ccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEEeC
Q 015038 264 RVHGLACWFDVLFDGS--TVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWG 341 (414)
Q Consensus 264 ~~hg~~~wFd~~f~~~--~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~~~ 341 (414)
++|||++|||+.|++. ..+++|||+|.++.|||+|++++|++|+.|++||+|+|++++.+++.++|.++++++++...
T Consensus 230 ~~hg~~~wFd~~l~~~~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~ 309 (328)
T d1g6q1_ 230 MINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFES 309 (328)
T ss_dssp EEEEEEEEEEEECCCCTTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEccCCCCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEe
Confidence 9999999999999874 45789999999999999999999999999999999999999999988888776666665444
Q ss_pred CC
Q 015038 342 PG 343 (414)
Q Consensus 342 ~~ 343 (414)
.+
T Consensus 310 ~~ 311 (328)
T d1g6q1_ 310 NG 311 (328)
T ss_dssp CS
T ss_pred cC
Confidence 33
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.9e-55 Score=429.26 Aligned_cols=301 Identities=36% Similarity=0.595 Sum_probs=272.1
Q ss_pred hhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCC
Q 015038 31 YYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPS 110 (414)
Q Consensus 31 ~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~ 110 (414)
+|+++.+|..||+|..|+.+|+++|.++...+++++|||||||+|.+++++|++|+++|+|+|.|+++..|+++++.|+
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~- 79 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK- 79 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTT-
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhC-
Confidence 4888899999999999999999999887767789999999999999999999999999999999987788888888887
Q ss_pred CCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHHHh
Q 015038 111 LGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEIAN 189 (414)
Q Consensus 111 l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~~~ 189 (414)
+.++|+++++++.+++.+ ++||+|+++++++++.++..++.++.++.|+|||||.++|..+++|++|+++..++.+
T Consensus 80 ~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~--- 156 (316)
T d1oria_ 80 LDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY--- 156 (316)
T ss_dssp CTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH---
T ss_pred CccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhh---
Confidence 889999999999999876 7999999999999999999999999999999999999999999999999999888754
Q ss_pred hhcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecceeeeE
Q 015038 190 KALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVHGL 268 (414)
Q Consensus 190 ~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~hg~ 268 (414)
...+|. +++|+|++++..... ..|.+...++. .+++|..+++|||.+...+++ .+..++++++.++|++|||
T Consensus 157 ~~~~~~--~~~g~d~~~~~~~~~----~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l-~~~~~~~~~~~~~g~~hg~ 229 (316)
T d1oria_ 157 KIHWWE--NVYGFDMSCIKDVAI----KEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDL-TFTSPFCLQVKRNDYVHAL 229 (316)
T ss_dssp HTTTTT--CBTTBCCHHHHHHHH----TSCEEECCCGGGEEEEEEEEEEEETTTCCGGGG-SEEEEEEEEBCSSEEEEEE
T ss_pred hccccc--ccccccchhhhhhhc----cccEEEEecCceEeeCCEEeEEEcCCCCcccCc-cEEEEEEEeecCCceEEEE
Confidence 356785 799999999887654 45777777665 556789999999999988887 5778899999999999999
Q ss_pred EEEEEEEecCCccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEEEEeCC
Q 015038 269 ACWFDVLFDGSTVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSVKMWGP 342 (414)
Q Consensus 269 ~~wFd~~f~~~~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~~~~~~ 342 (414)
++|||+.|+++..++.|||+|..+.|||+|++++|++|+.|++||.|+|+|+++++++++|.++|+++++..+.
T Consensus 230 ~~wFd~~l~~~~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~~ 303 (316)
T d1oria_ 230 VAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 303 (316)
T ss_dssp EEEEEEECTTSSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEECS
T ss_pred EEEEEEEeeCCCCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecCe
Confidence 99999999988777899999999999999999999999999999999999999999888888888888877654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-53 Score=411.27 Aligned_cols=298 Identities=33% Similarity=0.581 Sum_probs=265.6
Q ss_pred HHhhhhhhhhHhhhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhC
Q 015038 29 FHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGN 108 (414)
Q Consensus 29 f~~Y~~~~~~~~ml~d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n 108 (414)
|+.|+.+..|..||+|..|+..|.++|.++....++++|||||||+|.+++++|++|+++|+|+|.|+.+..|++...++
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~ 80 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 80 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999888889999999999999999999999999999999997666677777777
Q ss_pred CCCCCcEEEEEcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccceeEEeeccchHhHHHH
Q 015038 109 PSLGERITVIKGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLFVEI 187 (414)
Q Consensus 109 ~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~~e~ 187 (414)
+ ..++++++++|++++..+ ++||+|+|+++++++.++..++.++.++.++|||||+++|+.+++|++|++...++.+
T Consensus 81 ~-~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~- 158 (311)
T d2fyta1 81 K-LEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHAD- 158 (311)
T ss_dssp T-CTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH-
T ss_pred C-CCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHh-
Confidence 6 789999999999999776 7999999999999999999999999999999999999999999999999999888754
Q ss_pred HhhhcccccccccccccccccccccccCCCCCeEeecCCc-cccCCceEEEEecCCCCcccccceeeeEEEEEeecceee
Q 015038 188 ANKALFWQQQNYYGVDLTPLYGSAFHGYFSQPVVDAFDPR-LLVAPAVSHVIDFKKTKEENLYEIDIPLKFISSVGTRVH 266 (414)
Q Consensus 188 ~~~~~~w~~~~~~G~d~~~~~~~~~~~~~~~p~v~~~~~~-~L~~~~~~~~~df~~~~~~~l~~~~~~~~~~~~~~g~~h 266 (414)
...+|. +++|+|++++.+... .+|++..+++. .|++|..++++||.+...+++ .+..+++++++++|++|
T Consensus 159 --~~~~~~--~~~G~d~~~~~~~~~----~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~g~~~ 229 (311)
T d2fyta1 159 --RIAFWD--DVYGFKMSCMKKAVI----PEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDFTLKITRTSMCT 229 (311)
T ss_dssp --HTGGGG--CBTTBCCGGGHHHHT----TBCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEEEEEBCSCEEEE
T ss_pred --hhcccc--ccccccccchhhccc----cccEEEecChhheecCCEeEEEeccCcCccccc-cEEEEEEeeecCCcceE
Confidence 345675 899999999876543 56777777764 677789999999999888877 57778999999999999
Q ss_pred eEEEEEEEEecCC-ccceeecCCCCCCCCCceeeEEeeCCeeeecCCCEEEEEEEEEeCCCCceEEEEEEEE
Q 015038 267 GLACWFDVLFDGS-TVQRWLTTAPGAPTTHWYQLRCVLSQPLYVMAGQEITGQLRMIAHSAQSYTIYLTLSV 337 (414)
Q Consensus 267 g~~~wFd~~f~~~-~~~~~lsT~P~~~~thW~Q~~~~l~~pl~v~~G~~i~~~i~~~~~~~~~~~v~~~~~~ 337 (414)
||++|||+.|+++ ...+.|||+|..+.|||+|++++|++|+.|++||+|+|++++.++..+.|.++|++++
T Consensus 230 g~~~Wfd~~f~~~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~~~~r~~~~~~~~ 301 (311)
T d2fyta1 230 AIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTL 301 (311)
T ss_dssp EEEEEEEEEECTTCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEE
T ss_pred EEEEEEEEEEECCCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEEEEEEEEEECCCCCEEEEEEEEE
Confidence 9999999999864 3467899999999999999999999999999999999999999987777777777654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=3.3e-18 Score=158.22 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
+...+.......++++|||||||+|.++..+++.|+ +|+|||+| .|++.|++++..++ .+++++++|++++++++
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~---~~i~~~~~d~~~l~~~~ 104 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFKN 104 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeecccccccccccccccc---ccchheehhhhhccccc
Confidence 455566666666788999999999999999999987 79999999 59999999988765 37999999999999889
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+||+|+|........+...+..+++.+.++|||||+++++...
T Consensus 105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 9999999643333345556788999999999999999886543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.1e-17 Score=152.92 Aligned_cols=119 Identities=18% Similarity=0.109 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.+.+.+...++++|||||||+|.++..+++....+|+|||+| .|++.|+++....+ +.++++++.+|+.++..
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~v~~~~~d~~~~~~ 97 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYVA 97 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCCC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhh-ccccchhhhhHHhhccc
Confidence 33446677788888999999999999999999988633489999999 59999999999887 88899999999999866
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+++||+|+|....+++.+ +..++.++.++|||||++++...
T Consensus 98 ~~~fD~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp SSCEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred cCceeEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEec
Confidence 689999999887777765 67888999999999999988643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.71 E-value=2e-17 Score=152.92 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=90.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc-CC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE-PM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~-~~ 139 (414)
.++++|||||||+|.++..+++.|. +|+|||+| +|++.|+++...++ .+++++++|+.+++++++||+|+|. ..
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG---LKPRLACQDISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT---CCCEEECCCGGGCCCSCCEEEEEECTTG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC---ccceeeccchhhhcccccccccceeeee
Confidence 4568999999999999999999987 79999999 59999999988764 3699999999999888899999984 23
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.+...+..+++.+.++|||||.++++.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 4456667778899999999999999998753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=4.3e-17 Score=149.64 Aligned_cols=111 Identities=22% Similarity=0.299 Sum_probs=96.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~ 130 (414)
..+.+.....++.+|||||||+|.++..+++.++ +|+|||+| .|++.|++++..++ + +++.++++|+++++++ ++
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKG-V-ENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHT-C-CSEEEEECBTTBCCSCTTC
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccc-c-ccccccccccccccccccc
Confidence 4466777778999999999999999999999875 79999999 59999999988765 4 5699999999998876 78
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|+|....+++.+ +..+++++.|+|||||++++.
T Consensus 83 fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 83 FDIITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp EEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeeeeceeecccC---HHHHHHHHHHeeCCCcEEEEE
Confidence 999999887777665 788999999999999998774
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.70 E-value=7.6e-17 Score=145.96 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPM 139 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~ 139 (414)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++....+ .++.++.+|+++++.+ ++||+|+|..+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~---~~~~~~~~d~~~l~~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVIFIDS 111 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccc---ccccccccccccccccCcCceEEEEecc
Confidence 3667999999999999999999876 69999999 59999999887754 4578899999998766 78999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.+++.. ..+..+++.+.++|||||.+++..
T Consensus 112 l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 112 IVHFEP-LELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp GGGCCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhCCh-hHHHHHHHHHHHHcCcCcEEEEEE
Confidence 777643 347789999999999999997653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.69 E-value=7.6e-17 Score=147.00 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=94.9
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cce
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKA 131 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~f 131 (414)
.+++.....++.+|||||||+|.++..+++.|+ +|+|+|+| +|++.|++++...+ . ++++++++|+++++++ ++|
T Consensus 6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~-~-~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG-H-QQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCC-CCCSCTTCE
T ss_pred HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccc-c-cccccccccccccccccccc
Confidence 355566677889999999999999999999886 79999999 59999999988765 3 6799999999998865 789
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|+|....+++.+ +..++.++.++|||||++++..
T Consensus 83 D~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 99999888888766 6788999999999999998753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.67 E-value=2e-16 Score=149.35 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
+...+.......++.+|||||||+|.++..+++. |+ +|+|||+| .+++.|+++....+ +.++++++++|+++++++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCE 132 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccc-cccccccccccccccccc
Confidence 3344445556678899999999999999999886 55 79999999 49999999988876 888999999999999866
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++||+|+|....+++.+ +..++.++.++|||||++++..
T Consensus 133 ~~sfD~V~~~~~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPD---KLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp TTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhccchhhhccC---HHHHHHHHHHhcCCCcEEEEEE
Confidence 78999999887777765 6788999999999999998753
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.65 E-value=5.9e-16 Score=137.35 Aligned_cols=112 Identities=22% Similarity=0.285 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
..+..++..+...++.+|||+|||+|.+++.+|+.+ .+|+|+|++ .+++.|+++++.++ +.++++++++|+.+...+
T Consensus 20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~g-l~~~v~~~~gda~~~~~~ 97 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCK 97 (186)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTT
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcC-CCcceEEEECchhhcccc
Confidence 344667777778899999999999999999999875 489999999 59999999999987 888999999999887555
Q ss_pred -CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 -EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 -~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.||+|+++..... ...+++.+.+.|||||.+++.
T Consensus 98 ~~~~D~v~~~~~~~~------~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 98 IPDIDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp SCCEEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCcCEEEEeCcccc------chHHHHHHHHHhCcCCEEEEE
Confidence 78999998654322 567888899999999998754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.64 E-value=8.3e-16 Score=142.68 Aligned_cols=107 Identities=19% Similarity=0.119 Sum_probs=91.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC--CCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--PEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--~~~fDvIis~~ 138 (414)
.++++|||||||+|..+..+++.|.++|+|||+| .|++.|+++....+ ...++.++++|+....+ .++||+|+|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchhhhcccccccceEEEEcc
Confidence 5788999999999999999999888899999999 59999999988765 56789999999966543 46899999987
Q ss_pred Ccccc-CChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 139 MGTLL-VNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+++ .++..+..++..+.++|||||+++.+
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 77665 45677889999999999999998764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.63 E-value=1.7e-15 Score=135.29 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPM 139 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~ 139 (414)
..++++|||||||+|.++..+++.|. +|+|+|+| .+++.|+++....+ + +++++..+|+.+...+++||+|++..+
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~fD~I~~~~~ 104 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEG-L-DNLQTDLVDLNTLTFDGEYDFILSTVV 104 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEECCTTTCCCCCCEEEEEEESC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcc-c-cchhhhheecccccccccccEEEEeee
Confidence 34567999999999999999999987 69999999 58999999888765 4 469999999999888899999999888
Q ss_pred ccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 140 GTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 140 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++.. .....+++.+.++|+|||++++.
T Consensus 105 ~~~~~~-~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 105 MMFLEA-QTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GGGSCT-THHHHHHHHHHHTEEEEEEEEEE
T ss_pred eecCCH-HHHHHHHHHHHHHcCCCcEEEEE
Confidence 887754 44778999999999999998764
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.62 E-value=1.8e-15 Score=135.07 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=93.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCC-CcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLG-ERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...++++|||+|||+|.+++.+++.+. +|+++|+|+ +++.|+++++.++ +. .+++++.+|+.+...+++
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~-l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhC-CccceEEEEEcchhhhhccCC
Confidence 3455666777899999999999999999988754 799999995 8899999999887 54 479999999987544578
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
||+|+++++.+.. ....+.+++.+.++|||||.+++
T Consensus 120 fD~Ii~~~p~~~~--~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 120 YNKIITNPPIRAG--KEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEEEECCCSTTC--HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEEcccEEec--chhhhhHHHHHHHhcCcCcEEEE
Confidence 9999999886643 44467889999999999999875
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.61 E-value=1.2e-15 Score=139.71 Aligned_cols=97 Identities=29% Similarity=0.385 Sum_probs=80.2
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEc-C
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISE-P 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~-~ 138 (414)
.++.+|||+|||+|.++..+++.|+ +|+|+|+| .|++.|+++.. ..++.+++++++.+ ++||+|+|. .
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~--------~~~~~~~~~~l~~~~~~fD~ii~~~~ 111 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV--------KNVVEAKAEDLPFPSGAFEAVLALGD 111 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC--------SCEEECCTTSCCSCTTCEEEEEECSS
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc--------cccccccccccccccccccceeeecc
Confidence 3677999999999999999999887 79999999 59999987521 13678999998775 789999985 4
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+++.+ +..+++.+.|+|||||.++++.
T Consensus 112 ~~~~~~d---~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 112 VLSYVEN---KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp HHHHCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhh---HHHHHHHHHhhcCcCcEEEEEE
Confidence 5666665 6778899999999999998764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-15 Score=138.67 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~ 138 (414)
..++.+|||||||+|.++..+++.+..+|+|||+| .|++.|++++...+ ..+++++++|++++.++ ++||+|++..
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~--~~~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc--cccccccccccccccccccccccccccc
Confidence 34567999999999999998877667789999999 59999999987654 24689999999998764 7899999988
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+.+++.++ .+..++..+.++|||||.+++..
T Consensus 136 ~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 136 VIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp CGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhh-hhhhHHHHHHHhcCCcceEEEEE
Confidence 88887654 36678999999999999998753
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=8e-15 Score=138.34 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...++.+|||||||+|.++..+++. |+ +|+|||+| ++++.|++++++.+ +..++.+...|..++ +++
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~-l~~~~~~~~~d~~~~--~~~ 117 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDF--AEP 117 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGC--CCC
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhc-cccchhhhhhhhhhh--ccc
Confidence 45667777788999999999999999999877 65 89999999 59999999999887 788899999888765 579
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||.|+|..+..++.. .....+++.+.++|||||++++..
T Consensus 118 fD~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 999999888877654 347889999999999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=3.4e-15 Score=138.80 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+++.... .++++|||+|||+|.+++.+++.|+ +|+|+|+|+ +++.|+++++.|+ + ++.++++|+.+...
T Consensus 108 ~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~-~--~~~~~~~d~~~~~~ 181 (254)
T d2nxca1 108 RLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG-V--RPRFLEGSLEAALP 181 (254)
T ss_dssp HHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT-C--CCEEEESCHHHHGG
T ss_pred hHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcC-C--ceeEEecccccccc
Confidence 34445555443 5789999999999999999999886 699999995 9999999999987 5 46788999887544
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++||+|+++...+ .+..++..+.+.|||||+++++
T Consensus 182 ~~~fD~V~ani~~~------~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 182 FGPFDLLVANLYAE------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GCCEEEEEEECCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccchhhhccccc------cHHHHHHHHHHhcCCCcEEEEE
Confidence 57999999975432 3567788899999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.57 E-value=4.3e-15 Score=135.44 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMG 140 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~ 140 (414)
.++++|||||||+|.++..+++.|. +|+|||+| .+++.|+++. .+++.++.++++++.++++||+|++..+.
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~------~~~~~~~~~~~~~~~~~~~fD~I~~~~vl 91 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL------KDGITYIHSRFEDAQLPRRYDNIVLTHVL 91 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS------CSCEEEEESCGGGCCCSSCEEEEEEESCG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc------cccccccccccccccccccccccccccee
Confidence 5677899999999999999998886 59999999 5999998763 34699999999998888999999998888
Q ss_pred cccCChhhHHHHHHHHH-hccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARD-RFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~-r~LkpgG~lip~~ 170 (414)
+++.+ +..++.++. ++|||||.+++..
T Consensus 92 eh~~d---~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 92 EHIDD---PVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp GGCSS---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EecCC---HHHHHHHHHHHhcCCCceEEEEe
Confidence 88766 567777776 8999999998754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.57 E-value=7.3e-15 Score=133.73 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
.++.+|||||||+|.++..+++. +..+|+|+|+| +|++.|+++++..+ ...++++..+|+.+++. +++|+|++.
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~~~~~~~~~d~~~~~~-~~~d~i~~~ 115 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDIRHVEI-KNASMVILN 115 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CSSCEEEECSCTTTCCC-CSEEEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-ccchhhhccchhhcccc-ccceeeEEe
Confidence 57789999999999999999985 33489999999 59999999988775 67789999999987754 578999998
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
...+++. ......+++++++.|||||.+++..
T Consensus 116 ~~l~~~~-~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 116 FTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp SCGGGSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeccccC-hhhHHHHHHHHHHhCCCCceeeccc
Confidence 7777764 4457899999999999999998753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=1e-14 Score=137.58 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=94.3
Q ss_pred HHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 50 TYYAAVIENR-ADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 50 ~~~~ai~~~~-~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
.|...+.+.. ...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|+++....+ .+++++.+|+.++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~---~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP---YDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS---SEEEEEESCTTTC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc---ccccccccccccc
Confidence 3445555443 3456789999999999999999875 2 2479999999 59999999988754 4799999999998
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++++||+|+|..+.+++.+ +..+++++.+.|||||.+++..
T Consensus 90 ~~~~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 90 ELNDKYDIAICHAFLLHMTT---PETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CCSSCEEEEEEESCGGGCSS---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCceEEEEehhhhcCCC---HHHHHHHHHHHcCcCcEEEEEE
Confidence 87889999999988888766 6788999999999999987644
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=4.1e-15 Score=131.24 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=88.9
Q ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCC----------CCCcEEEEEccccc
Q 015038 56 IENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPS----------LGERITVIKGKVEE 124 (414)
Q Consensus 56 ~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~----------l~~~i~vi~~d~~~ 124 (414)
...+...++.+|||+|||+|..+..+|+.|. +|+|+|+| .|++.|+++.+..+. -...++++.+|+.+
T Consensus 13 ~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 13 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp HHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred HHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 3445567899999999999999999999998 69999999 599999998865320 02346788888887
Q ss_pred ccCC--CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VELP--EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~~--~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+... ..||+|++..+.+++.. .....+++.+.++|||||.+++.
T Consensus 92 l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 92 LTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp STHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 6543 57999999877777654 44678889999999999998653
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.56 E-value=5.8e-15 Score=137.36 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=92.4
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-Cc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~ 130 (414)
+.+++.+...++.+|||+|||+|.++..++..+..+|++||+| .|++.|+++.... .+++++++|+++++++ ++
T Consensus 83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSSC
T ss_pred HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccCCCc
Confidence 3445555566778999999999999998776666689999999 5999999876543 3589999999998765 68
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
||+|++..+.+++.++ .+..+++++.++|||||.+++.
T Consensus 159 fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEE
Confidence 9999999988887654 3678899999999999999874
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.55 E-value=5e-15 Score=127.10 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=86.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCCCceeEEEEc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELPEKADILISE 137 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~~fDvIis~ 137 (414)
..++++|||+|||+|.+++.++.+|+++|+++|.+ .+++.+++++..++ ..++++++++|+.++ ...++||+|+++
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc-cccchhhhcccccccccccccccceeEec
Confidence 36899999999999999999999999999999999 58899999999887 788999999999875 234789999999
Q ss_pred CCccccCChhhHHHHHHHH--HhccCCCeEEEccc
Q 015038 138 PMGTLLVNERMLETYVIAR--DRFLVPMGKMFPSV 170 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~ 170 (414)
||... ......+..+ .++|+|||.+++..
T Consensus 91 PPy~~----~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 91 PPYAK----ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp CSSHH----HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhcc----chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 88542 2233344433 46899999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=3.1e-14 Score=134.79 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=97.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.+.+.+.+...+|.+|||||||.|.+++.+|+. |+ +|+||++| +.++.|++++...+ +.+++.+...|.... ++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~-l~~~v~~~~~d~~~~--~~ 125 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEEF--DE 125 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSC-CSSCEEEEECCGGGC--CC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhc-cchhhhhhhhccccc--cc
Confidence 355667778889999999999999999988865 66 79999999 58999999999887 889999999987643 47
Q ss_pred ceeEEEEcCCccccCCh------hhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNE------RMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+||.|+|..+..++.+. ...+.+++.+.++|||||++++...
T Consensus 126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 89999998887776542 3478999999999999999987643
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.52 E-value=4.2e-14 Score=131.19 Aligned_cols=115 Identities=23% Similarity=0.222 Sum_probs=94.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.......+.++|||||||+|.++..+++.. ..+++++|++++++.+++++...+ +.++++++.+|+.+. .+.+|
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~-~~~rv~~~~~D~~~~-~~~~~ 147 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEG-LSDRVDVVEGDFFEP-LPRKA 147 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTT-CTTTEEEEECCTTSC-CSSCE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhh-cccchhhccccchhh-cccch
Confidence 445556655567899999999999999999873 458999999889999999998886 888999999998764 34689
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.|++.++ ....+++++.+.|||||.+++..
T Consensus 148 D~v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 148 DAIILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hheeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 999998888876554 35678899999999999988654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=6e-14 Score=132.45 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=96.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
+.+.+.+...+|.+|||||||.|.+++.+|+. |+ +|+||.+| ..++.|++++...+ +.+++++..+|..++ +++
T Consensus 52 ~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~~~~--~~~ 127 (285)
T d1kpga_ 52 DLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQF--DEP 127 (285)
T ss_dssp HHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGC--CCC
T ss_pred HHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhhhcc--ccc
Confidence 55667777889999999999999999987776 65 79999999 59999999988887 889999999999876 478
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
||.|+|-.+..++.... ...+++++.++|||||++++..
T Consensus 128 fD~i~si~~~eh~~~~~-~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHER-YDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CSEEEEESCGGGTCTTT-HHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccceeeehhhhhcCchh-HHHHHHHHHhhcCCCCcEEEEE
Confidence 99999988777765433 6789999999999999998654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=2.6e-14 Score=135.22 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC---CcEEEEEccc
Q 015038 47 RTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG---ERITVIKGKV 122 (414)
Q Consensus 47 r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~---~~i~vi~~d~ 122 (414)
|...+.+.+.+.+...++++|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++....+ .. .+..+...++
T Consensus 40 r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~ 117 (292)
T d1xvaa_ 40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANW 117 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCG
T ss_pred hHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccc
Confidence 4455556666665556678999999999999999999987 69999999 59999999887654 22 1344555565
Q ss_pred ccc----cCCCceeEEEEcC-CccccCC----hhhHHHHHHHHHhccCCCeEEEccc
Q 015038 123 EEV----ELPEKADILISEP-MGTLLVN----ERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 123 ~~~----~~~~~fDvIis~~-~~~~l~~----e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
... +..++||+|+|.. ...++.+ ...+..+++++.++|||||+++++.
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 433 2347899999843 2334432 3457789999999999999998753
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=2.3e-14 Score=128.40 Aligned_cols=91 Identities=26% Similarity=0.291 Sum_probs=76.9
Q ss_pred CCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEcCCc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISEPMG 140 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~~~~ 140 (414)
++.+|||||||+|.++..++ +++|||+| .|++.|+++ +++++++|+++++.+ ++||+|+|..+.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~l 101 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTI 101 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc---------cccccccccccccccccccccccccccc
Confidence 45689999999999887663 47999999 588888763 379999999998776 689999999888
Q ss_pred cccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 141 TLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 141 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
+++.+ +..+++++.++|+|||.+++..
T Consensus 102 ~h~~d---~~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 102 CFVDD---PERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp GGSSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccc---cccchhhhhhcCCCCceEEEEe
Confidence 88865 7788999999999999998654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.9e-14 Score=126.62 Aligned_cols=119 Identities=13% Similarity=-0.070 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC---------------CCC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP---------------SLG 112 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~---------------~l~ 112 (414)
..+.+.+.+.+...++.+|||+|||+|..+..+|+.|. +|+|||+|+ +++.|++.....+ ...
T Consensus 31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSS 109 (229)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecC
Confidence 33445555555667888999999999999999999998 699999995 8888888754321 013
Q ss_pred CcEEEEEcccccccC--CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 113 ERITVIKGKVEEVEL--PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 113 ~~i~vi~~d~~~~~~--~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++++++|+.++.. .+.||+|+.....+++.. ...+.++..+.++|||||.+++.
T Consensus 110 ~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 110 GNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp SSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CcEEEEEcchhhccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEE
Confidence 579999999988753 368999998777776654 44788899999999999998654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.45 E-value=1.2e-13 Score=127.83 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=85.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
..|...+...+|.+|||+|||+|.++..+|++ + ..+|+++|.+ ++++.|+++++.++ ...++++..+|+.+...++
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeecccccc
Confidence 34566677789999999999999999999986 3 4589999999 59999999998875 5678999999999875567
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.||.|+++.+. +..++..+.+.|||||+++.
T Consensus 154 ~fD~V~ld~p~--------p~~~l~~~~~~LKpGG~lv~ 184 (250)
T d1yb2a1 154 MYDAVIADIPD--------PWNHVQKIASMMKPGSVATF 184 (250)
T ss_dssp CEEEEEECCSC--------GGGSHHHHHHTEEEEEEEEE
T ss_pred eeeeeeecCCc--------hHHHHHHHHHhcCCCceEEE
Confidence 89999986432 23456778899999999975
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=1.6e-13 Score=131.87 Aligned_cols=113 Identities=25% Similarity=0.233 Sum_probs=93.5
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIi 135 (414)
.++++|||+|||+|.+++.+++.|+++|+++|+| .+++.|++++..|+ +.++++++++|+.+.. ..++||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4689999999999999999999999999999999 58899999999998 8889999999987642 236899999
Q ss_pred EcCCccccCCh------hhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 136 SEPMGTLLVNE------RMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 136 s~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
++++....... .....++..+.++|+|||.++.+.++.++
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~ 268 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV 268 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 99885443221 22456778888999999999988766443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=2.5e-13 Score=126.49 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=87.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.... .++.+|||+|||+|.+++.+|+.|+.+|+|+|+|+ .++.++++++.|+ +.++++++++|+.++...+.|
T Consensus 99 ~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~-l~~~v~~~~~D~~~~~~~~~~ 175 (260)
T d2frna1 99 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGENIA 175 (260)
T ss_dssp HHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhC-CCceEEEEEcchHHhccCCCC
Confidence 3444443 47899999999999999999999888999999995 7899999999997 899999999999998777889
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
|.|+++++... ..++..+.++|++||.+.
T Consensus 176 D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 176 DRILMGYVVRT-------HEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp EEEEECCCSSG-------GGGHHHHHHHEEEEEEEE
T ss_pred CEEEECCCCch-------HHHHHHHHhhcCCCCEEE
Confidence 99999876433 234455668899999874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.2e-13 Score=124.44 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L 127 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~ 127 (414)
+..++..... .++++|||||||+|..+..+++.+..+|+|||+| .+++.|+++....+ .++.++.+++.... +
T Consensus 42 ~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 42 YMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTL 117 (229)
T ss_dssp HHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGS
T ss_pred HHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc---ccccccccccccccccc
Confidence 3344444443 4688999999999999999998876689999999 59999999987643 56888888876653 3
Q ss_pred C-CceeEEEEcCCcc--ccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 P-EKADILISEPMGT--LLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~-~~fDvIis~~~~~--~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+ ++||.|+.+.... .+........+++.+.|+|||||++++
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 3 6899999765533 223334467888999999999999865
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.42 E-value=8.2e-13 Score=122.67 Aligned_cols=115 Identities=27% Similarity=0.213 Sum_probs=93.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
..+.+.......++|||||||+|.++..++++. ..+++++|++++++.|++++...+ +.+++++..+|+.+ +.+..+
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~-~~~ri~~~~~d~~~-~~p~~~ 148 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAG-LADRVTVAEGDFFK-PLPVTA 148 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCSCCE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcC-Ccceeeeeeeeccc-cccccc
Confidence 345555544456799999999999999999873 348999999889999999998876 78899999999886 445679
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
|+|++..+.|.+.++ ....+++++++.|||||++++..
T Consensus 149 D~v~~~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d 186 (256)
T d1qzza2 149 DVVLLSFVLLNWSDE-DALTILRGCVRALEPGGRLLVLD 186 (256)
T ss_dssp EEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhccccccccCcH-HHHHHHHHHHhhcCCcceeEEEE
Confidence 999998888776544 35678899999999999987654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2e-12 Score=120.96 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=94.9
Q ss_pred hhhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc
Q 015038 44 DYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK 121 (414)
Q Consensus 44 d~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d 121 (414)
.+..|+.+...++.... .++.+|||+|||+|.+++.++.. ...+|+|+|+|+ .++.|++|+..++ + .+++++++|
T Consensus 90 PRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~-~-~~v~~~~~d 166 (274)
T d2b3ta1 90 PRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA-I-KNIHILQSD 166 (274)
T ss_dssp CCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCS
T ss_pred cccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC-c-ccceeeecc
Confidence 33456656655555443 45678999999999999998875 456899999995 8899999999886 5 469999999
Q ss_pred cccccCCCceeEEEEcCCccccC----------C------------hhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 122 VEEVELPEKADILISEPMGTLLV----------N------------ERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 122 ~~~~~~~~~fDvIis~~~~~~l~----------~------------e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+.+....++||+|+|||+..--. . -.....++..+.++|+|||.+++..+
T Consensus 167 ~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 167 WFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp TTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 98754446999999998842110 0 12356788899999999999987543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.38 E-value=1.3e-12 Score=124.93 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=92.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc-----CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE-----LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~-----~~~~fDvI 134 (414)
.++++|||++||+|.+++.++..|+++|++||+| ..++.|+++++.|+ +. .+++++.+|+.++- ..++||+|
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~-l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhc-ccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4689999999999999999999999999999999 58899999999997 64 68999999997651 23689999
Q ss_pred EEcCCcccc------CChhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 135 ISEPMGTLL------VNERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 135 is~~~~~~l------~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|++|+...- ........++..+.++|+|||.++.++++.+
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 999884321 1123356788889999999999998877644
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=8.5e-13 Score=122.76 Aligned_cols=109 Identities=28% Similarity=0.365 Sum_probs=88.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhC-CCCCCcEEEEEcccccccC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGN-PSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n-~~l~~~i~vi~~d~~~~~~ 127 (414)
...|...+...+|.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. +...+++.++++|+.+..+
T Consensus 85 ~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 355777788889999999999999999999997 4 3589999999 6999999988753 1245789999999998766
Q ss_pred C-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 128 P-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+ +.||.|+++.+ + +..++..+.+.|||||.++.
T Consensus 165 ~~~~fDaV~ldlp-----~---P~~~l~~~~~~LkpGG~lv~ 198 (264)
T d1i9ga_ 165 PDGSVDRAVLDML-----A---PWEVLDAVSRLLVAGGVLMV 198 (264)
T ss_dssp CTTCEEEEEEESS-----C---GGGGHHHHHHHEEEEEEEEE
T ss_pred cCCCcceEEEecC-----C---HHHHHHHHHhccCCCCEEEE
Confidence 5 68999997533 2 34566788999999999864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.37 E-value=8.8e-13 Score=116.25 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=88.4
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---
Q 015038 52 YAAVIENRA-DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--- 126 (414)
Q Consensus 52 ~~ai~~~~~-~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--- 126 (414)
++++...+. ..++++|||++||+|.+++.++..|+++|++||.+ ..++.+++++...+ ..++++++++|+.++-
T Consensus 29 realFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~-~~~~~~i~~~D~~~~l~~~ 107 (182)
T d2fhpa1 29 KESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQF 107 (182)
T ss_dssp HHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccchhhhhhh
Confidence 344444433 45789999999999999999999999999999999 58899999998876 6778999999987641
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHH--HhccCCCeEEEccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIAR--DRFLVPMGKMFPSV 170 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~ 170 (414)
...+||+|+++||...-. ...++..+ ..+|+++|.+++..
T Consensus 108 ~~~~~~fDlIflDPPY~~~~----~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 108 YEEKLQFDLVLLDPPYAKQE----IVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHTTCCEEEEEECCCGGGCC----HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccCCCcceEEechhhhhhH----HHHHHHHHHHCCCCCCCEEEEEEc
Confidence 235899999999854322 33444444 35899999988653
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.35 E-value=2e-12 Score=116.37 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=84.0
Q ss_pred HHHHH--hcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 53 AAVIE--NRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 53 ~ai~~--~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
+++.. .+...++.+|||+|||+|..+..+++. +..+|+|+|+| +|++.|+++++..+ ++.++.+|+......
T Consensus 44 a~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~~ 119 (209)
T d1nt2a_ 44 AMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWKY 119 (209)
T ss_dssp HHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGGT
T ss_pred HHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCcccc
Confidence 44443 355678999999999999999999986 55689999999 59999999887653 699999998876433
Q ss_pred ----CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 129 ----EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 129 ----~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+|+|+++.. .......++.++.++|||||.+++.
T Consensus 120 ~~~~~~vd~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 120 SGIVEKVDLIYQDIA-----QKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp TTTCCCEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccceEEEEEeccc-----ChhhHHHHHHHHHHHhccCCeEEEE
Confidence 46777776422 2233677889999999999999765
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=1.1e-12 Score=125.60 Aligned_cols=110 Identities=22% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-----LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-----~~~~fDvIi 135 (414)
.++++|||+|||+|.+++.+|+ |+.+|+++|+| .+++.|+++++.|+ + ++++++.+|+.++. ..++||+|+
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ng-l-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNG-L-GNVRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcC-C-CCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence 4789999999999999998886 55689999999 59999999999997 6 46999999987752 236899999
Q ss_pred EcCCccccCC------hhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 136 SEPMGTLLVN------ERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 136 s~~~~~~l~~------e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
++++...... ......++..+.++|+|||.++.+.++..
T Consensus 221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 9988543322 22245678888999999999998777643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=3.6e-12 Score=115.06 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.....+++.+...++.+|||||||+|.++..+|+. | ..+|+++|++ ++++.|+++++..+ . .++.++.+|..+..
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~-~n~~~~~~d~~~~~ 139 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFVCGDGYYGV 139 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCC
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-c-cccccccCchHHcc
Confidence 44556777788889999999999999999999886 4 3489999999 59999999998875 3 57889999987754
Q ss_pred CC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 LP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.. ++||+|++....+.++ + .+.+.|||||+++.
T Consensus 140 ~~~~~fD~I~~~~~~~~~p-----~----~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVP-----E----TWFTQLKEGGRVIV 173 (213)
T ss_dssp GGGCCEEEEEECSBBSCCC-----H----HHHHHEEEEEEEEE
T ss_pred ccccchhhhhhhccHHHhH-----H----HHHHhcCCCcEEEE
Confidence 43 6899999976544332 2 23567999999864
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.8e-12 Score=120.95 Aligned_cols=108 Identities=23% Similarity=0.208 Sum_probs=89.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...|...+...++.+|||+|||+|.++..+|++ + ..+|+++|.+ ++++.|+++++..+ +.+++.+..+|+......
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEeccccccccc
Confidence 345777788899999999999999999999986 3 3589999999 59999999999887 778999999998665445
Q ss_pred CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 129 EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 129 ~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
..+|.|+.+.+ + +..++..+.+.|||||.+++
T Consensus 171 ~~~D~V~~d~p-----~---p~~~l~~~~~~LKpGG~lv~ 202 (266)
T d1o54a_ 171 KDVDALFLDVP-----D---PWNYIDKCWEALKGGGRFAT 202 (266)
T ss_dssp CSEEEEEECCS-----C---GGGTHHHHHHHEEEEEEEEE
T ss_pred cceeeeEecCC-----C---HHHHHHHHHhhcCCCCEEEE
Confidence 68999987432 2 45667888999999999974
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=2.7e-12 Score=119.81 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=74.1
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEc
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISE 137 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~ 137 (414)
..++.+|||||||+|.++..+++.+. .+++|+|+| .|++.|+++. .+++++.+|+.+++++ ++||+|++.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~~~l~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAIIRI 154 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccceeeehhhccCCCCCEEEEeec
Confidence 45678999999999999999998853 489999999 5888887652 3589999999998876 789999985
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...++ +.++.|+|||||.+++.
T Consensus 155 ~~~~~----------~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 155 YAPCK----------AEELARVVKPGGWVITA 176 (268)
T ss_dssp SCCCC----------HHHHHHHEEEEEEEEEE
T ss_pred CCHHH----------HHHHHHHhCCCcEEEEE
Confidence 43322 34578999999999765
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=4.4e-12 Score=118.66 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCEEEEECCCccHHHHHHHHc------CC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcE--EEEEcccccc-------c
Q 015038 64 GRVVVDVGAGSGILSLFAAQA------GA-KHVYAVEAS-EMAEYARKLIAGNPSLGERI--TVIKGKVEEV-------E 126 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~------g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i--~vi~~d~~~~-------~ 126 (414)
+.+|||||||+|.++..+++. +. .+++|||+| .|++.|++++.... ...++ .+...+++++ .
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhcccC
Confidence 348999999999988777653 11 268999999 59999999887654 22333 4455555433 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++||+|+|....+++.+ +..+++.+.++|+|||.+++.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp SCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEE
Confidence 2478999999888777765 678999999999999998764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.4e-12 Score=120.02 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=78.7
Q ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCc-------------------------
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGER------------------------- 114 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~------------------------- 114 (414)
..++++|||||||+|.++..++..+..+|+|+|+| .|++.|+++++..+ ....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP-GAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT-TCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc-ccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 35678999999999999888887777789999999 59999999987653 2110
Q ss_pred ---E-EEEEccccc--c--c-CCCceeEEEEcCCccccC-ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 115 ---I-TVIKGKVEE--V--E-LPEKADILISEPMGTLLV-NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 115 ---i-~vi~~d~~~--~--~-~~~~fDvIis~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+ .....+... . . ..++||+|++....+++. .+..+..+++.+.++|||||.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 0 111111111 1 1 136899999987776654 4456788999999999999999864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.30 E-value=3.8e-12 Score=120.60 Aligned_cols=106 Identities=22% Similarity=0.102 Sum_probs=85.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCC-CcEEEEEccccccc-----CCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLG-ERITVIKGKVEEVE-----LPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~-~~i~vi~~d~~~~~-----~~~~fDvI 134 (414)
.++++|||++||+|.+++.+++.|+ +|++||.| .+++.|++|++.|+ +. .+++++++|+.++- ..++||+|
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~-~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhc-ccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 4688999999999999999999988 69999999 58899999999987 55 47999999998752 23689999
Q ss_pred EEcCCccccCC-------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 135 ISEPMGTLLVN-------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 135 is~~~~~~l~~-------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|++|+...... +..+..++..+.++|+|||.+++.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 99998543211 344566778888999999975443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.2e-12 Score=112.64 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--CCCceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--LPEKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~~~~fDvIis~~ 138 (414)
..+.+|||++||+|.+++.++.+|+++|++||.| ..++.+++++..++ . .+++++.+|+.++- ...+||+|+++|
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~-~-~~~~ii~~d~~~~l~~~~~~fDlIf~DP 119 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFVDP 119 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEECC
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc-c-cceeeeeecccccccccccccCEEEEcC
Confidence 4678999999999999999999999999999999 58899999998864 3 56899999988763 236899999999
Q ss_pred CccccCChhhHHHHHHHHH--hccCCCeEEEcc
Q 015038 139 MGTLLVNERMLETYVIARD--RFLVPMGKMFPS 169 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~ 169 (414)
+...-. .+.++..+. .+|+++|.+++.
T Consensus 120 PY~~~~----~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 120 PFRRGL----LEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp SSSTTT----HHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccch----HHHHHHHHHHCCCCCCCeEEEEE
Confidence 854322 344444443 579999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.29 E-value=7.1e-12 Score=114.38 Aligned_cols=113 Identities=18% Similarity=0.108 Sum_probs=81.7
Q ss_pred HHHHHHHH---hcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc
Q 015038 50 TYYAAVIE---NRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE 124 (414)
Q Consensus 50 ~~~~ai~~---~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~ 124 (414)
...++|.. .+...++.+|||||||+|..+..+++.+ ..+|+|||+| .|++.|++++... .++..+.+|...
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~----~ni~~i~~d~~~ 133 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANK 133 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTC
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh----cccceEEEeecc
Confidence 34455555 3456788999999999999999999873 4589999999 5999998886654 367888888876
Q ss_pred ccC--CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 VEL--PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 ~~~--~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
... +..+|++++....+ .....+.++.++.++|||||.+++.
T Consensus 134 ~~~~~~~~~~v~~i~~~~~---~~~~~~~~l~~~~r~LKpgG~~~i~ 177 (230)
T d1g8sa_ 134 PQEYANIVEKVDVIYEDVA---QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp GGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccccceeEEeecccc---chHHHHHHHHHHHHhcccCceEEEE
Confidence 542 23444444322222 2334788889999999999998764
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.29 E-value=1.5e-11 Score=109.84 Aligned_cols=82 Identities=33% Similarity=0.411 Sum_probs=70.2
Q ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEE
Q 015038 57 ENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILI 135 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIi 135 (414)
....+.+|++|||+|||+|.+++.++..|+.+|+|+|+| .+++.|++++..++ .+.+++.+|+.++ +++||+|+
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~---~~~~~~~~d~~~~--~~~fD~Vi 114 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK---GKFKVFIGDVSEF--NSRVDIVI 114 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT---TSEEEEESCGGGC--CCCCSEEE
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC---CCceEEECchhhh--CCcCcEEE
Confidence 345667899999999999999999999998899999999 58899999988754 5789999998775 57899999
Q ss_pred EcCCcccc
Q 015038 136 SEPMGTLL 143 (414)
Q Consensus 136 s~~~~~~l 143 (414)
++|+....
T Consensus 115 ~nPP~~~~ 122 (201)
T d1wy7a1 115 MNPPFGSQ 122 (201)
T ss_dssp ECCCCSSS
T ss_pred EcCccccc
Confidence 99986543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=4e-12 Score=113.09 Aligned_cols=74 Identities=28% Similarity=0.370 Sum_probs=63.5
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEc
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISE 137 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~ 137 (414)
..+..|++|||+|||+|.+++.++..|+++|+|+|+++ +++.|+++.. +++++++|+.++ +++||+|++|
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-------~~~~~~~D~~~l--~~~fD~Vi~N 114 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEI--SGKYDTWIMN 114 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGC--CCCEEEEEEC
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-------cccEEEEehhhc--CCcceEEEeC
Confidence 45678999999999999999999999999999999995 7788888642 478999999875 4789999999
Q ss_pred CCcc
Q 015038 138 PMGT 141 (414)
Q Consensus 138 ~~~~ 141 (414)
|+..
T Consensus 115 PPfg 118 (197)
T d1ne2a_ 115 PPFG 118 (197)
T ss_dssp CCC-
T ss_pred cccc
Confidence 9853
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=3.8e-12 Score=110.97 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc---cCCCceeEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV---ELPEKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~~~~fDvIis~ 137 (414)
.++.+|||+|||+|.+++.++..|+ +|+++|.|+ +++.++++++.++ +..++....+|.... ...++||+|+++
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTG-LGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHT-CCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhc-cccceeeeehhcccccccccCCccceeEEc
Confidence 4688999999999999999999998 699999995 8899999999887 666666655554211 123689999999
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+...-. ...+..++. ..+|+|||++++.
T Consensus 118 PPY~~~~-~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 118 PPYAMDL-AALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp CCTTSCT-THHHHHHHH--HTCEEEEEEEEEE
T ss_pred cccccCH-HHHHHHHHH--cCCcCCCeEEEEE
Confidence 9854422 223444433 3689999998764
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=9.7e-12 Score=113.05 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=81.6
Q ss_pred HHHHHHHhc--CCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCC----CCcEEEEEcc
Q 015038 51 YYAAVIENR--ADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSL----GERITVIKGK 121 (414)
Q Consensus 51 ~~~ai~~~~--~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l----~~~i~vi~~d 121 (414)
....+++.+ ...++.+|||||||+|.++..+|+. | ..+|+++|.+ ++++.|++++++.+ + .+++.++.+|
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~-~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESC
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccC-cccccccceEEEEee
Confidence 334555655 4568899999999999999888886 4 4589999999 59999999987643 2 2578999999
Q ss_pred cccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 122 VEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 122 ~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
......+ ..||+|++......++ + .+.+.|||||+++.
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip-----~----~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVP-----Q----ALIDQLKPGGRLIL 179 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC-----H----HHHHTEEEEEEEEE
T ss_pred cccccchhhhhhhhhhhcchhhcC-----H----HHHhhcCCCcEEEE
Confidence 8775444 6899999865443332 2 34578999999975
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.27 E-value=1.6e-11 Score=111.36 Aligned_cols=103 Identities=22% Similarity=0.209 Sum_probs=79.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~ 129 (414)
...+++.+...++.+|||||||+|.++..+++.+. +|+++|.+ ++++.|+++.... .++.++.+|...... .+
T Consensus 59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~~ 133 (224)
T d1vbfa_ 59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEEK 133 (224)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGGC
T ss_pred HHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhhh
Confidence 34566777788999999999999999999999854 79999999 5889998887643 479999999876433 36
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+||+|++......+ ++ .+.+.|||||+|+.
T Consensus 134 pfD~Iiv~~a~~~i-----p~----~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 134 PYDRVVVWATAPTL-----LC----KPYEQLKEGGIMIL 163 (224)
T ss_dssp CEEEEEESSBBSSC-----CH----HHHHTEEEEEEEEE
T ss_pred hHHHHHhhcchhhh-----hH----HHHHhcCCCCEEEE
Confidence 79999986443322 23 33467999999875
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.1e-11 Score=118.63 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhC---------CCCCCcEEEEE
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGN---------PSLGERITVIK 119 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n---------~~l~~~i~vi~ 119 (414)
...|...+...+|.+|||+|||+|.+++.+|++ | ..+|+++|++ ++++.|+++++.. ....+++++.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 355777788889999999999999999999987 4 3589999999 5999999988742 12467899999
Q ss_pred cccccccC---CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 120 GKVEEVEL---PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 120 ~d~~~~~~---~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+.+... ...||.|+.+.+. +..++..+.+.|||||+++.
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~p~--------P~~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDMLN--------PHVTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp SCTTCCC-------EEEEEECSSS--------TTTTHHHHGGGEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEeecCcC--------HHHHHHHHHHhccCCCEEEE
Confidence 99987632 2579999976432 23456778899999999864
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=1.6e-11 Score=109.87 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---CCCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---LPEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---~~~~fDvIis~ 137 (414)
++..|||||||+|..+..+|+. ....++|||++ +++..|.+++...+ + .++.++.+|+..+. .++.+|.|+..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~-l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh-c-cCchhcccchhhhhcccCchhhhccccc
Confidence 3458999999999999998887 34589999999 68999999888876 5 57999999998763 24789999876
Q ss_pred CCccccCChhh-----HHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNERM-----LETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~~-----l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+..+...... -..++..+.|.|||||.+++.
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 65544322111 157889999999999999764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.7e-11 Score=117.69 Aligned_cols=115 Identities=22% Similarity=0.280 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhC-------CCCCCcEEEEEcc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGN-------PSLGERITVIKGK 121 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n-------~~l~~~i~vi~~d 121 (414)
....+.+.+...++.+|||||||+|.+++.+|+. ++++++|||+|+ +++.|+++.+.. +.-..+++++++|
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 4456677777788999999999999999988875 777899999994 888887765431 1123579999999
Q ss_pred cccccCCC---ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 122 VEEVELPE---KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 122 ~~~~~~~~---~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+.+.+..+ .+|+|+++... ..+. +...+.++.+.|||||+++..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~---f~~~-~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFA---FGPE-VDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTT---TCHH-HHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccccCcceEEEEccee---cchH-HHHHHHHHHHhCCCCcEEEEe
Confidence 98876543 36888875432 2333 567788899999999999754
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=1.9e-11 Score=113.95 Aligned_cols=126 Identities=23% Similarity=0.234 Sum_probs=92.9
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
+..|+.+.+.+.......+..+|||+|||+|..++.+++.+..+|+|+|+|+ .++.|++|++.++ +.+++.+..+++.
T Consensus 92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~-~~~~~~i~~~~~~ 170 (271)
T d1nv8a_ 92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFL 170 (271)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTT
T ss_pred hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcC-CCceeEEeecccc
Confidence 3456666666665544445679999999999999999887777899999995 8899999999997 8889999999987
Q ss_pred cccC--CCceeEEEEcCCcc----ccC----Ch---------hhHHHHHHHHHhccCCCeEEEcccc
Q 015038 124 EVEL--PEKADILISEPMGT----LLV----NE---------RMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 124 ~~~~--~~~fDvIis~~~~~----~l~----~e---------~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+... .++||+|||||+.- .+. .| .-+.-+.+-+.++|+|||.+++..+
T Consensus 171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7533 26899999999821 010 11 1123333335689999999887654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2e-11 Score=113.52 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=79.6
Q ss_pred CCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCC-------------------------
Q 015038 60 ADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGE------------------------- 113 (414)
Q Consensus 60 ~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~------------------------- 113 (414)
...++.+|||||||+|.+++..+..+..+|+|+|+|+ |++.+++.+.+....-+
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 4567889999999999888666655566899999995 99999988765421100
Q ss_pred ---cEEEEEccccccc------C-CCceeEEEEcCCccccC-ChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 114 ---RITVIKGKVEEVE------L-PEKADILISEPMGTLLV-NERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 114 ---~i~vi~~d~~~~~------~-~~~fDvIis~~~~~~l~-~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...++..|+..-. . +++||+|++....+++. +...+..+++++.++|||||.++..
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1134445554321 1 25799999987776664 4455888999999999999998754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=5.1e-11 Score=108.33 Aligned_cols=111 Identities=17% Similarity=0.215 Sum_probs=84.7
Q ss_pred HHHHHHHH---hcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccc
Q 015038 50 TYYAAVIE---NRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVE 123 (414)
Q Consensus 50 ~~~~ai~~---~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~ 123 (414)
...++|+. .+...+|.+|||+|||+|.++..+++. | ..+|+|+|++ .|++.++++++.. .++..+..|..
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~----~~~~~i~~d~~ 132 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDAT 132 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTT
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc----CCceEEEEECC
Confidence 34455654 345678999999999999999999987 4 4589999999 4999999887654 35778888876
Q ss_pred cccC----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 124 EVEL----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 124 ~~~~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.... ...+|+|+++... ......++.++.++|||||.+++.
T Consensus 133 ~~~~~~~~~~~vD~i~~d~~~-----~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 133 KPEEYRALVPKVDVIFEDVAQ-----PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CGGGGTTTCCCEEEEEECCCS-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcccccccccceEEEEEEccc-----cchHHHHHHHHHHhcccCCeEEEE
Confidence 5431 2679999885322 234677889999999999998865
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.14 E-value=1.3e-10 Score=104.56 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
......+++.+...++.+|||||||+|.++..+++. | .+|+++|.+ ++++.|++++.+.+ . +++.++++|..+..
T Consensus 64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g-~-~nv~~~~gd~~~g~ 140 (215)
T d1jg1a_ 64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAG-V-KNVHVILGDGSKGF 140 (215)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCC
T ss_pred hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcC-C-ceeEEEECccccCC
Confidence 344466777888889999999999999999999976 5 469999999 58899999999875 3 68999999998743
Q ss_pred C-CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 L-PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 ~-~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
. ..+||.|++......+ +..+ .+.|+|||+++.
T Consensus 141 ~~~~pfD~Iiv~~a~~~i-----p~~l----~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKI-----PEPL----IEQLKIGGKLII 174 (215)
T ss_dssp GGGCCEEEEEECSBBSSC-----CHHH----HHTEEEEEEEEE
T ss_pred cccCcceeEEeecccccC-----CHHH----HHhcCCCCEEEE
Confidence 3 3789999985433322 2333 357999999964
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.13 E-value=1.9e-10 Score=102.76 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--C-CCceeEEEEc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--L-PEKADILISE 137 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--~-~~~fDvIis~ 137 (414)
....|||||||+|.++..+|+. +...++|+|++ .++..|.+++..++ + .++.++.+|+.++. + +.++|.|++.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~-l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~ 108 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 108 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc-c-ccceeeecCHHHHhhhccCCceehhccc
Confidence 3458999999999999999887 45589999999 58888888887765 4 57999999998764 2 3689999886
Q ss_pred CCccccCChh-----hHHHHHHHHHhccCCCeEEEcc
Q 015038 138 PMGTLLVNER-----MLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 138 ~~~~~l~~e~-----~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+..+..... .-..++..+.++|||||.+++.
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 6544322110 1257888999999999999754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.12 E-value=1.5e-10 Score=101.61 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----CCCceeEEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----LPEKADILIS 136 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~~~fDvIis 136 (414)
..+.+|||+.||||.+++.++.+|+++|+.||.+ ..++..+++++..+.......++..|+.++. ...+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3678999999999999999999999999999999 5889999999876522346788888776542 1247999999
Q ss_pred cCCccccCChhhHHHHHHHH--HhccCCCeEEEccc
Q 015038 137 EPMGTLLVNERMLETYVIAR--DRFLVPMGKMFPSV 170 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~ 170 (414)
+||...- ..+.++..+ ..+|+++|.+++..
T Consensus 122 DPPY~~~----~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPPFHFN----LAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCCSSSC----HHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhHhhh----hHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 9996542 234444444 35899999998754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=2.4e-10 Score=111.97 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhC-------CCCCCcEEE-EEc
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGN-------PSLGERITV-IKG 120 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n-------~~l~~~i~v-i~~ 120 (414)
+...|.+.+...++.+|||||||+|.+++.+|+. |.++|+|||+++ +++.|+++.+.. +.-...+.+ +.+
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 4455667777889999999999999999988875 777899999994 889998877542 101122333 344
Q ss_pred ccccccC----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 121 KVEEVEL----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 121 d~~~~~~----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+..+.+. -..+|+|+++.. ... ..+...+.++.+.|||||+++..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~---~f~-~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNF---LFD-EDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCT---TCC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred chhhccccccccccceEEEEecc---cCc-hHHHHHHHHHHHhcCCCcEEEEe
Confidence 4433221 136789987532 222 33678889999999999998754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.02 E-value=2.4e-10 Score=103.47 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=77.6
Q ss_pred HHHHHHhc--CCCCCCEEEEECCCccHHHHHHHHc----CC---CeEEEEeCh-HHHHHHHHHHHhCCC---CCCcEEEE
Q 015038 52 YAAVIENR--ADFIGRVVVDVGAGSGILSLFAAQA----GA---KHVYAVEAS-EMAEYARKLIAGNPS---LGERITVI 118 (414)
Q Consensus 52 ~~ai~~~~--~~~~~~~VLDiGcGtG~ls~~~a~~----g~---~~V~gvD~s-~~~~~a~~~~~~n~~---l~~~i~vi 118 (414)
...+++.+ ...++.+|||||||+|.++..+++. |. .+|+++|.+ ++++.|++++...+. -..++.++
T Consensus 67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~ 146 (223)
T d1r18a_ 67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV 146 (223)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence 34455555 4568899999999999998888875 22 379999999 588999887654210 01479999
Q ss_pred EcccccccCC-CceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 119 KGKVEEVELP-EKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 119 ~~d~~~~~~~-~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
.+|..+...+ ++||.|++....... ++ .+.+.|||||+++.
T Consensus 147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~-----p~----~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 147 EGDGRKGYPPNAPYNAIHVGAAAPDT-----PT----ELINQLASGGRLIV 188 (223)
T ss_dssp ESCGGGCCGGGCSEEEEEECSCBSSC-----CH----HHHHTEEEEEEEEE
T ss_pred ecccccccccccceeeEEEEeechhc-----hH----HHHHhcCCCcEEEE
Confidence 9998875433 689999986543332 22 23578999999964
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.97 E-value=5.7e-10 Score=100.38 Aligned_cols=114 Identities=14% Similarity=0.226 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE 126 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~ 126 (414)
.+...+.+. .++++|||+|||+|..++.+|++ ...+|+++|.+ ++++.|++++...+ +.++|+++.+|..++-
T Consensus 46 ~lL~~lv~~---~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 46 QIMDAVIRE---YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGASQDLI 121 (214)
T ss_dssp HHHHHHHHH---HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHG
T ss_pred HHHHHHHHh---hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeeccccccc
Confidence 344444444 36789999999999999999986 23589999999 58999999999887 8899999999998752
Q ss_pred C-------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 L-------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 ~-------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
. .++||+|+.+.-... .. ....+....++|||||+++++..
T Consensus 122 ~~l~~~~~~~~~D~ifiD~~~~~---~~-~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLDHWKDR---YL-PDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp GGHHHHSCCCCEEEEEECSCGGG---HH-HHHHHHHHTTCEEEEEEEEESCC
T ss_pred cchhhcccccccceeeecccccc---cc-cHHHHHHHhCccCCCcEEEEeCc
Confidence 1 257999997521111 11 12234556789999999987654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.6e-09 Score=99.67 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=64.3
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-------CCCceeE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-------LPEKADI 133 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-------~~~~fDv 133 (414)
+..++||+|||+|..++.+++. ...+++|+|+| ++++.|+++++.|+ +.+++.+++.+....- ..++||+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3458999999999999888876 34489999999 58899999999997 9999999987654431 1257999
Q ss_pred EEEcCCccc
Q 015038 134 LISEPMGTL 142 (414)
Q Consensus 134 Iis~~~~~~ 142 (414)
|+|||+.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 999999764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2e-09 Score=97.00 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
..+...+.+. .+.++|||||||+|.-++.+|++ . ..+|+++|.+ +.++.|++++...+ +.++++++.+|+.+.
T Consensus 48 g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 48 AQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALET 123 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHH
T ss_pred HHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeehhhc
Confidence 4444444444 46789999999999999999986 2 3489999999 58899999999987 889999999998664
Q ss_pred c-------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 126 E-------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 126 ~-------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
- ..++||+|+.+. +.......+..+.++|+|||+++++..-
T Consensus 124 l~~~~~~~~~~~fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHHHHHTTCTTCEEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred chhhhhhcccCCccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 2 136899999753 2223456667788999999999876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.85 E-value=8.2e-09 Score=93.34 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA-G-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
+.+...+.+. .+.++|||||+++|.-++.+|++ + ..+|+.+|.+ +.++.|++++.+.+ +.++|+++.+++.+.
T Consensus 48 g~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 48 GQFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPV 123 (227)
T ss_dssp HHHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHH
T ss_pred HHHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-cccceeeeehHHHHH
Confidence 3455555444 36789999999999999999976 2 3589999999 58899999999987 889999999999765
Q ss_pred c--------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 126 E--------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 126 ~--------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
- ..++||+|+.+.- .......++.+.++|+|||+++.+..
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa~------k~~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHHHhccccCCceeEEEeccc------hhhhHHHHHHHHhhcCCCcEEEEccC
Confidence 2 1357999998532 22255667778899999999988754
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=4.3e-09 Score=92.80 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=86.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---- 126 (414)
+.+...+...++.++||++||+|..+..+++. +..+|+|+|.+ +|++.|++++... .+++.++++++.++.
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~---~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF---SDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG---TTTEEEEECCGGGHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc---cccccchhHHHhhHHHHHH
Confidence 33456666778999999999999999988886 44689999999 5999999988763 478999999987753
Q ss_pred -C-CCceeEEEEcCCccc--c----CChhhHHHHHHHHHhccCCCeEEEc
Q 015038 127 -L-PEKADILISEPMGTL--L----VNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 127 -~-~~~fDvIis~~~~~~--l----~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
. .++||.|+.++-.+. + .+-......+..+.++|+|||.+++
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 1 268999998642211 1 1122356778889999999999864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.78 E-value=1.1e-08 Score=93.06 Aligned_cols=89 Identities=12% Similarity=0.219 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....++++|||||||+|.++..+++.+. +|+|||++ .+++.++++.... ++++++++|+.++++
T Consensus 7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc----cchhhhhhhhhhccc
Confidence 34456677777777899999999999999999999865 79999999 4888888776442 579999999999876
Q ss_pred CC-ceeEEEEcCCccc
Q 015038 128 PE-KADILISEPMGTL 142 (414)
Q Consensus 128 ~~-~fDvIis~~~~~~ 142 (414)
+. ....|++|.+.+.
T Consensus 82 ~~~~~~~vv~NLPYnI 97 (235)
T d1qama_ 82 PKNQSYKIFGNIPYNI 97 (235)
T ss_dssp CSSCCCEEEEECCGGG
T ss_pred cccccceeeeeehhhh
Confidence 63 4456888877554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.72 E-value=6.6e-08 Score=88.28 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=82.4
Q ss_pred HHHHHHhcCCCC-CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFI-GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~-~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
...+.+....+. ..+|||||||+|.++..++++ +.-+++..|..+.++ ... ..++++++.+|+.+. .|
T Consensus 69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~-~~~ri~~~~gd~~~~-~p- 138 (244)
T d1fp1d2 69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAP-PLSGIEHVGGDMFAS-VP- 138 (244)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCC-CCTTEEEEECCTTTC-CC-
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccC-CCCCeEEecCCcccc-cc-
Confidence 345556555434 479999999999999999887 344899999976542 222 457899999999763 34
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..|++++..+.|...++. ...+++++++.|+|||++++...
T Consensus 139 ~~D~~~l~~vLh~~~de~-~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEK-CIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp CEEEEEEESSGGGSCHHH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceEEEEehhhhhCCHHH-HHHHHHHHHHHcCCCcEEEEEEE
Confidence 459999888877765544 56788999999999999987654
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=1.1e-08 Score=95.22 Aligned_cols=113 Identities=18% Similarity=0.124 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC--------CCCCcEEEEEccccccc-CCCce
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP--------SLGERITVIKGKVEEVE-LPEKA 131 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~--------~l~~~i~vi~~d~~~~~-~~~~f 131 (414)
.++++||.||+|.|..+..+++.+..+|++||+++ +++.|++.+..+. ....|++++.+|+..+- ..++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 46789999999999999998888778999999995 7899987664321 12478999999997752 23689
Q ss_pred eEEEEcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 132 DILISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 132 DvIis~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
|+||++.......... .-..+++.+++.|+|||+++....+.+
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 9999987643211111 125688999999999999987654433
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.68 E-value=2.3e-08 Score=94.68 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=84.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhC--C-CCCCcEEEEEcccccc--cCCCceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGN--P-SLGERITVIKGKVEEV--ELPEKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n--~-~l~~~i~vi~~d~~~~--~~~~~fDvI 134 (414)
...++||.||.|.|..+..+++. +..+|++||+++ +++.|++.+... + .-..+++++.+|+.++ ..+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45789999999999999999887 466999999995 789998876421 1 1246899999999886 234789999
Q ss_pred EEcCCccccCCh----hhHHHHHHHHHhccCCCeEEEcccceeEE
Q 015038 135 ISEPMGTLLVNE----RMLETYVIARDRFLVPMGKMFPSVGRIHM 175 (414)
Q Consensus 135 is~~~~~~l~~e----~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 175 (414)
+++......... -.-..+++.+++.|+|||+++......+.
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~ 200 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILL 200 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCccc
Confidence 987654322110 11256888999999999999876555443
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.67 E-value=3.2e-08 Score=94.08 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc----C--CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCCCce
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA----G--AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELPEKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~----g--~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~f 131 (414)
....++.+|||.|||+|.+...+.+. + ..+++|+|+++ ++..|+.++..++ ....+.++|........+|
T Consensus 113 ~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~f 189 (328)
T d2f8la1 113 IQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---QKMTLLHQDGLANLLVDPV 189 (328)
T ss_dssp HTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---CCCEEEESCTTSCCCCCCE
T ss_pred hCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh---hhhhhhccccccccccccc
Confidence 34456679999999999998887653 1 23799999995 7788888876643 4567888887766556799
Q ss_pred eEEEEcCCccccCCh---------------hhHHHHHHHHHhccCCCeEEEc
Q 015038 132 DILISEPMGTLLVNE---------------RMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 132 DvIis~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~lip 168 (414)
|+|++||+....... .....++..+.+.|+|||++++
T Consensus 190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~ 241 (328)
T d2f8la1 190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 241 (328)
T ss_dssp EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence 999999985432111 1123467778899999998743
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=1.3e-07 Score=90.90 Aligned_cols=113 Identities=19% Similarity=0.174 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
+.+.+.+.+.+...++.+|||+.||+|.+++.+|+.+ ++|+|+|.+ +.++.|+++++.|+ + .+++++.++.++.-.
T Consensus 198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~-i-~n~~~~~~~~~~~~~ 274 (358)
T d1uwva2 198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNG-L-QNVTFYHENLEEDVT 274 (358)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCTTSCCS
T ss_pred hHHHHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcc-c-ccceeeecchhhhhh
Confidence 3444556666666778899999999999999999864 579999999 58899999999987 4 579999999877421
Q ss_pred -----CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 128 -----PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 128 -----~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..++|+||.+|+-.++. ..+.. +.+ ++|.-+++++..
T Consensus 275 ~~~~~~~~~d~vilDPPR~G~~--~~~~~----l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 275 KQPWAKNGFDKVLLDPARAGAA--GVMQQ----IIK-LEPIRIVYVSCN 316 (358)
T ss_dssp SSGGGTTCCSEEEECCCTTCCH--HHHHH----HHH-HCCSEEEEEESC
T ss_pred hhhhhhccCceEEeCCCCccHH--HHHHH----HHH-cCCCEEEEEeCC
Confidence 25699999999977642 22333 333 467666666543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=1.4e-07 Score=83.67 Aligned_cols=103 Identities=20% Similarity=0.303 Sum_probs=83.2
Q ss_pred CCCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcC
Q 015038 61 DFIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEP 138 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~ 138 (414)
..++++|+|+|+|.|.-++.+|-. ...+|+.+|.+ .-+...+......+ + .+++++++.++++....+||+|+|..
T Consensus 63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~~~~~~~fD~V~sRA 140 (207)
T d1jsxa_ 63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK-L-ENIEPVQSRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT-C-SSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred hhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC-C-cceeeeccchhhhccccccceehhhh
Confidence 346789999999999999999876 44689999998 57777777777654 4 47999999999987667899999865
Q ss_pred CccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 139 MGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 139 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
+.. +..++.-+.++++++|.+++-.+.
T Consensus 141 ~~~-------~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 141 FAS-------LNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp SSS-------HHHHHHHHTTSEEEEEEEEEEESS
T ss_pred hcC-------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 533 577888889999999999876553
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.1e-08 Score=88.79 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
...+.|.+.....++..|||||+|.|.++..+++.+. +|++||+++ ++...++.+.... ..++++++.+|+.++.++
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhc-cccchhhhHHHHhhhhhh
Confidence 3445666777677889999999999999999999875 899999995 8888888887654 557899999999988765
Q ss_pred CceeEEEEcCCccc
Q 015038 129 EKADILISEPMGTL 142 (414)
Q Consensus 129 ~~fDvIis~~~~~~ 142 (414)
..+.||+|++.+.
T Consensus 86 -~~~~vV~NLPY~I 98 (278)
T d1zq9a1 86 -FFDTCVANLPYQI 98 (278)
T ss_dssp -CCSEEEEECCGGG
T ss_pred -hhhhhhcchHHHH
Confidence 4578999987644
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=3e-08 Score=92.94 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=81.7
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCC-C-CCCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNP-S-LGERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~-~-l~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
...++||-||.|.|..+..+++. +..+|++||+++ +++.|++.+..+. . -..+++++.+|+.++- .+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45689999999999999999987 467899999995 8899988765321 0 2468999999998863 346899999
Q ss_pred EcCCccccCCh--hhHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNE--RMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e--~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++......... -.-..+++.+++.|+|||+++....+
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 87654321111 11257888999999999999876554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.55 E-value=2.9e-09 Score=97.50 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=68.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-C
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-E 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~ 129 (414)
.+.|.+.....++.+|||||||+|.++..+++.+. +|+|||++ .+++.++++... ..+++++++|+.+++.+ .
T Consensus 18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~----~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL----NTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT----CSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh----ccchhhhhhhhhccccccc
Confidence 34566777677889999999999999999999865 79999999 477776655432 35799999999998877 5
Q ss_pred ceeEEEEcCCccc
Q 015038 130 KADILISEPMGTL 142 (414)
Q Consensus 130 ~fDvIis~~~~~~ 142 (414)
..+.|+++.+.+.
T Consensus 93 ~~~~vv~NLPY~I 105 (245)
T d1yuba_ 93 QRYKIVGNIPYHL 105 (245)
T ss_dssp SEEEEEEECCSSS
T ss_pred eeeeEeeeeehhh
Confidence 6778999887543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.50 E-value=8e-08 Score=89.14 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCC--CCCCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNP--SLGERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~--~l~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
.+.++||-||.|.|..+..+++. +.++|++||+++ +++.|++.+..+. .-..|++++.+|...+- .+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45689999999999999999986 677999999995 7899988764321 12468999999998752 347899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.+.......... .-..+++.+++.|+|||+++....+
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s 191 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence 986543211111 1256778889999999999876554
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=3.2e-07 Score=81.35 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCC
Q 015038 52 YAAVIENRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPE 129 (414)
Q Consensus 52 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~ 129 (414)
.+.|.+.+...++.+|||.|||+|.+...+.+. ...+++|+|+++.+ . .+..+..++++|........
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~---------~-~~~~~~~~~~~~~~~~~~~~ 77 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA---------L-DLPPWAEGILADFLLWEPGE 77 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT---------C-CCCTTEEEEESCGGGCCCSS
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH---------H-hhcccceeeeeehhcccccc
Confidence 345666666678899999999999988777654 34579999998622 0 13345788899988776668
Q ss_pred ceeEEEEcCCccccCC--------------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVN--------------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~--------------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+||+|+++++...... ......++..+.++|+|||.+.+-
T Consensus 78 ~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 78 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 9999999988432110 001235567778899999997543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.46 E-value=4e-07 Score=79.90 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=70.6
Q ss_pred CCCEEEEECCCccH----HHHHHHHcC----C-CeEEEEeChH-HHHHHHHHH------------------HhCCC----
Q 015038 63 IGRVVVDVGAGSGI----LSLFAAQAG----A-KHVYAVEASE-MAEYARKLI------------------AGNPS---- 110 (414)
Q Consensus 63 ~~~~VLDiGcGtG~----ls~~~a~~g----~-~~V~gvD~s~-~~~~a~~~~------------------~~n~~---- 110 (414)
+..+|+++|||+|- +++.+...+ . -+|+|.|+|+ .++.|++.. ...+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 45699999999996 445555431 1 2799999994 778776422 11100
Q ss_pred -------CCCcEEEEEccccccc--CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 111 -------LGERITVIKGKVEEVE--LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 111 -------l~~~i~vi~~d~~~~~--~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
....+.+...+..... ..++||+|+|-.+..++. +.....+++.+.+.|+|||.+++...
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~-~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFD-KTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSC-HHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcC-HHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 0012334444443322 236899999987777654 45567899999999999999987643
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.46 E-value=5.9e-07 Score=81.75 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 64 GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
..+|||||||+|.++..++++ ...+++..|..+.++. .+ ..++++++.+|+.+- .+ .+|++++..+.|.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~-~~~rv~~~~gD~f~~-~p-~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN-------LS-GSNNLTYVGGDMFTS-IP-NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CC-CBTTEEEEECCTTTC-CC-CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh-------Cc-ccCceEEEecCcccC-CC-CCcEEEEEeeccc
Confidence 468999999999999999887 3448999999865432 22 467899999999763 33 6899999888887
Q ss_pred cCChhhHHHHHHHHHhccCCC---eEEEccc
Q 015038 143 LVNERMLETYVIARDRFLVPM---GKMFPSV 170 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~Lkpg---G~lip~~ 170 (414)
..++. ...+|+++++.|+|| |++++..
T Consensus 151 w~d~~-~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKD-CLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHH-HHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHH-HHHHHHHHHHHcCcccCCcEEEEEE
Confidence 65544 567889999999998 6666543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.45 E-value=1.1e-07 Score=89.44 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCC--CCCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPS--LGERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~--l~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
...++||-||.|.|..+..+++. +..+|++||+++ +++.|++.+..+.. -..+++++.+|..++- ..++||+||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45689999999999999999987 457999999995 88999987654321 1368999999998762 346899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
.+.......... .-..+++.+++.|+|||+++....+.+
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 986543221111 135678899999999999988765533
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.45 E-value=4.6e-07 Score=82.40 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=77.3
Q ss_pred HHHHHhcCCCC-CCEEEEECCCccHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFI-GRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~-~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..+.......+ ..+|||||||+|.++..++++ ...++++.|..+.++. .. ..++++++.+|+.+- .| .
T Consensus 70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~-~~~r~~~~~~d~~~~-~P-~ 139 (243)
T d1kyza2 70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------AP-SYPGVEHVGGDMFVS-IP-K 139 (243)
T ss_dssp HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CC-CCTTEEEEECCTTTC-CC-C
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cc-cCCceEEeccccccc-CC-C
Confidence 44555544434 468999999999999999987 3448999999864321 22 457899999999763 34 3
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
.|+++...+.|...+ .....+++++++.|+|||.+++...
T Consensus 140 ad~~~l~~vlh~~~d-~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 140 ADAVFMKWICHDWSD-EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CSCEECSSSSTTSCH-HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred cceEEEEEEeecCCH-HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 566665555555443 4467789999999999999876544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.8e-07 Score=87.06 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhC--CCCCCcEEEEEccccccc--CCCceeEEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGN--PSLGERITVIKGKVEEVE--LPEKADILI 135 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n--~~l~~~i~vi~~d~~~~~--~~~~fDvIi 135 (414)
..+++||-||.|.|..+..+.+. +..+|++||+++ +++.|++.+..+ ..-..|++++.+|+..+- .+++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45689999999999999999987 577999999995 889998876431 112468999999988763 347899999
Q ss_pred EcCCccccCChh-hHHHHHHHHHhccCCCeEEEcccce
Q 015038 136 SEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 136 s~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
++.......... .-..+++.+++.|+|||+++....+
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 986543221111 1246788899999999999876543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=2.7e-07 Score=86.12 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhC--CCCCCcEEEEEccccccc--CC-CceeEE
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGN--PSLGERITVIKGKVEEVE--LP-EKADIL 134 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n--~~l~~~i~vi~~d~~~~~--~~-~~fDvI 134 (414)
.+.++||-||.|.|..+..+++. +.++|++||+++ +++.|++.+..+ .....+++++.+|..++- .+ ++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45689999999999999999987 557899999995 889998865421 112478999999987753 23 589999
Q ss_pred EEcCCccccCChh-hHHHHHHHHHhccCCCeEEEccccee
Q 015038 135 ISEPMGTLLVNER-MLETYVIARDRFLVPMGKMFPSVGRI 173 (414)
Q Consensus 135 is~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~ 173 (414)
|.+.......... .-..+++.+++.|+|||+++....+.
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 9976643221111 12567889999999999999876653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.32 E-value=8.5e-07 Score=85.57 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=79.2
Q ss_pred CCCEEEEECCCccHHHHHHHH-cCCCeEEEEeChH-HHHHHHHHHHhCCCCC--------------CcEEEEEccccccc
Q 015038 63 IGRVVVDVGAGSGILSLFAAQ-AGAKHVYAVEASE-MAEYARKLIAGNPSLG--------------ERITVIKGKVEEVE 126 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~--------------~~i~vi~~d~~~~~ 126 (414)
++.+|||..||||..++.++. .|+.+|+++|+|+ .++.++++++.|+ .. ..+.+.+.|+..+-
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNF-DGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHC-CSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcC-ccccccccccccccccceeEeehhhhhhhh
Confidence 678999999999999997655 6888999999995 7799999999885 32 24666777765442
Q ss_pred --CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 127 --LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 127 --~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
..+.||+|..+|+|+- ..+++.+.+.++.||.+.++..
T Consensus 124 ~~~~~~fDvIDiDPfGs~-------~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDPFGSP-------MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECCSSCC-------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCCCCCCc-------HHHHHHHHHHhccCCEEEEEec
Confidence 2367999999987653 4567777888999999987644
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=1.7e-07 Score=85.83 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL 127 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~ 127 (414)
....+.|.+.....+++.|||||||+|.++..+++.+. +|+|||+++ +++..++... ..++++++++|+.++.+
T Consensus 7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhhcc
Confidence 33455667777777889999999999999999998865 799999995 7777766432 23589999999998754
Q ss_pred CC------ceeEEEEcCCccc
Q 015038 128 PE------KADILISEPMGTL 142 (414)
Q Consensus 128 ~~------~fDvIis~~~~~~ 142 (414)
++ .--.|++|.+.+.
T Consensus 82 ~~~~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 82 GELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp HHHHHHHTSCEEEEEECCTTT
T ss_pred cccccccCCCeEEEecchHHH
Confidence 31 2236788877554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.23 E-value=3.1e-06 Score=76.36 Aligned_cols=101 Identities=22% Similarity=0.209 Sum_probs=78.7
Q ss_pred CCCEEEEECCCccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----CCceeEEEE
Q 015038 63 IGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----PEKADILIS 136 (414)
Q Consensus 63 ~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----~~~fDvIis 136 (414)
...+|+|||+|.|.-++.+|-. +..+|+.+|.+ .-+...+.....-+ + .++.++++.++++.. .++||+|+|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~-L-~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ-L-ENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT-C-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC-C-CCcEEEeehhhhccccccccccceEEEE
Confidence 4679999999999999998874 56689999998 45666555555543 4 468999999987642 368999999
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
-.+.. +..++.-+..++++||.+++-.+.
T Consensus 148 RAva~-------l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 148 RAVAR-------LSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp ECCSC-------HHHHHHHHGGGEEEEEEEEEEECC
T ss_pred hhhhC-------HHHHHHHHhhhcccCCEEEEECCC
Confidence 75432 677888899999999999876654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.20 E-value=2.6e-06 Score=83.52 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----CC----------CeEEEEeChH-HHHHHHHHHHhCCCCCC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA----GA----------KHVYAVEASE-MAEYARKLIAGNPSLGE 113 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g~----------~~V~gvD~s~-~~~~a~~~~~~n~~l~~ 113 (414)
....+.|.+.+...++.+|+|.+||+|.+...+.+. +. ..++|+|+++ +...|+.++.-++....
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 556677777777777889999999999998888764 11 2499999995 77888887776652234
Q ss_pred cEEEEEcccccccCCCceeEEEEcCCccccCC--------------hhhHHHHHHHHHhccCCCeEEEc
Q 015038 114 RITVIKGKVEEVELPEKADILISEPMGTLLVN--------------ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 114 ~i~vi~~d~~~~~~~~~fDvIis~~~~~~l~~--------------e~~l~~~l~~~~r~LkpgG~lip 168 (414)
...+..+|..+.....+||+|++||+...... ...-..++..+.++|++||++.+
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i 296 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 296 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence 56778888877665679999999999643211 11123477788899999998743
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=6.2e-06 Score=76.47 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=86.0
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cCCCceeE
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--ELPEKADI 133 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~~~~fDv 133 (414)
.+...++.+|||++||.|.=+..++..+. .+|+|+|++ .-+...+++++..+ .. ++.+...+.... ..+++||.
T Consensus 97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g-~~-~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG-MK-ATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT-CC-CEEEECCTTCTHHHHTTCCEEE
T ss_pred ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccc-cc-ceeeeccccccchhcccccccE
Confidence 44567889999999999999988887643 589999999 47777788888765 32 344444443322 23468999
Q ss_pred EEEcCCcccc----CCh--------hh-------HHHHHHHHHhccCCCeEEEcccceeEEeeccchHhH
Q 015038 134 LISEPMGTLL----VNE--------RM-------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYLF 184 (414)
Q Consensus 134 Iis~~~~~~l----~~e--------~~-------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l~ 184 (414)
|+.+.+-+.. .++ .. -..++..+.++|||||.++-++|+ +.|.+.+...
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS--~~~~ENE~vv 242 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS--VLPEENSLQI 242 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC--CCGGGTHHHH
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec--CchhhCHHHH
Confidence 9998773221 111 11 246788889999999999988888 4566666543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=1.7e-05 Score=68.37 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEccccccc---------CCCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVE---------LPEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------~~~~ 130 (414)
.++.+||||||+.|.++..+++. ...+|+++|+.+|- .-+++.++.+|+.+.. ...+
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~------------~i~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD------------PIVGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC------------CCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc------------ccCCceEeecccccchhhhhhhhhccCcc
Confidence 46789999999999999988875 34689999987631 1246899999987642 2357
Q ss_pred eeEEEEcCCccccCC----h----hhHHHHHHHHHhccCCCeEEEcc
Q 015038 131 ADILISEPMGTLLVN----E----RMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 131 fDvIis~~~~~~l~~----e----~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
+|+|+|+.....-.+ + ......+.-+.++|++||.++.=
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 999999865332111 1 11345566678999999999743
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.05 E-value=1.2e-05 Score=75.45 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=88.4
Q ss_pred hcCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-CCceeE
Q 015038 58 NRADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-PEKADI 133 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-~~~fDv 133 (414)
.+...+|.+|||++||.|.=+..++.. +...++++|.+ .-+...++++...+ . .++.+...|...+.. ...||.
T Consensus 111 ~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~-~-~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 111 ALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-V-LNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-C-CSEEEESSCGGGGGGGCCCEEE
T ss_pred cccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH-h-hccccccccccccccccccccE
Confidence 345678899999999999988888765 33479999999 47777777777665 3 467788888776643 468999
Q ss_pred EEEcCCcccc--C----------Chhh-------HHHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 134 LISEPMGTLL--V----------NERM-------LETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 134 Iis~~~~~~l--~----------~e~~-------l~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
|+.+.+-+.. . .... -..++..+.++|||||.++-++|+ +.|.+.+..
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS--l~~eENE~V 255 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS--LEPEENEFV 255 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC--CCGGGTHHH
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc--CChHhHHHH
Confidence 9998773221 1 1111 236678888999999999988888 445665544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=2.3e-05 Score=72.80 Aligned_cols=120 Identities=12% Similarity=0.088 Sum_probs=85.0
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC----Cce
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKA 131 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~f 131 (414)
+...++.+|||++||.|.-+..+|.. +..+|+|+|++ .-+..++++++..+ . .++.+...|...+... ++|
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g-~-~~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG-V-SCCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGSCTTCGGGTTE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC-c-cceeeeehhhhhhccccccccee
Confidence 44568899999999999988887765 45589999999 47788888888875 3 5699999998876432 579
Q ss_pred eEEEEcCCccccC--------------Ch---hhH----HHHHHHHHhccCCCeEEEcccceeEEeeccchHh
Q 015038 132 DILISEPMGTLLV--------------NE---RML----ETYVIARDRFLVPMGKMFPSVGRIHMAPFSDEYL 183 (414)
Q Consensus 132 DvIis~~~~~~l~--------------~e---~~l----~~~l~~~~r~LkpgG~lip~~~~~~~~~~~~~~l 183 (414)
|.|+.+++-+... .. ..+ ..++..+. .|+|||.++-++|+ +.|.+.+..
T Consensus 168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS--l~~~ENe~v 237 (293)
T d2b9ea1 168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS--LCQEENEDV 237 (293)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC--CCGGGTHHH
T ss_pred eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc--CChhHhHHH
Confidence 9999987733210 00 011 23444444 47999999888777 446666554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.96 E-value=2.3e-05 Score=67.64 Aligned_cols=109 Identities=18% Similarity=0.208 Sum_probs=79.3
Q ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----
Q 015038 54 AVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL----- 127 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----- 127 (414)
.+...+...++..++|..+|.|..+..+.+.+. +|+|+|.++ +++.|++. ...++.+++++..++..
T Consensus 9 Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 9 EALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT------CCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc------cccceeEeehHHHHHHHHHHHc
Confidence 344556677899999999999999999998754 799999996 66777653 33579999998877631
Q ss_pred -CCceeEEEEcCCcc--ccCC----hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 -PEKADILISEPMGT--LLVN----ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 -~~~fDvIis~~~~~--~l~~----e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+++|.|+.++-.+ .+.+ -..+...|..+...|+|||.+++-
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 25799999875211 1111 112455678888999999998644
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.69 E-value=4.2e-05 Score=69.12 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=58.4
Q ss_pred CEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHH---HHHHhCCCC----CCcEEEEEccccccc--CCCceeEE
Q 015038 65 RVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYAR---KLIAGNPSL----GERITVIKGKVEEVE--LPEKADIL 134 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~---~~~~~n~~l----~~~i~vi~~d~~~~~--~~~~fDvI 134 (414)
.+|||.-||.|..++.+|..|+ +|+++|.++ ++...+ ++...+... ..+++++++|..++- ..+.||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999997 599999996 444433 333332211 247999999987753 33679999
Q ss_pred EEcCCcccc
Q 015038 135 ISEPMGTLL 143 (414)
Q Consensus 135 is~~~~~~l 143 (414)
+.+||...-
T Consensus 169 YlDPMFp~~ 177 (250)
T d2oyra1 169 YLDPMFPHK 177 (250)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999997543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.56 E-value=5.4e-05 Score=67.76 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHc----C-CCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA----G-AKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~----g-~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~ 130 (414)
.++++|||||++.|.-+++++.. + ..+|+++|++. ....+. . ..++|+++.+|..+... ...
T Consensus 79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~--~~~~I~~i~gDs~~~~~~~~l~~~~ 151 (232)
T d2bm8a1 79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S--DMENITLHQGDCSDLTTFEHLREMA 151 (232)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G--GCTTEEEEECCSSCSGGGGGGSSSC
T ss_pred hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----c--cccceeeeecccccHHHHHHHHhcC
Confidence 36789999999999877666542 2 45899999973 221111 1 23689999999865432 135
Q ss_pred eeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 131 ADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 131 fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
+|+|+.+.- |. .+..+..+ ...++|++||++++...
T Consensus 152 ~dlIfID~~-H~--~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 152 HPLIFIDNA-HA--NTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SSEEEEESS-CS--SHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred CCEEEEcCC-cc--hHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 788887542 22 23333333 24589999999987643
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=0.00013 Score=73.14 Aligned_cols=119 Identities=15% Similarity=0.025 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHc----C---------------CCeEEEEeChH-HHHHHHHHHHhC
Q 015038 49 GTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQA----G---------------AKHVYAVEASE-MAEYARKLIAGN 108 (414)
Q Consensus 49 ~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~----g---------------~~~V~gvD~s~-~~~~a~~~~~~n 108 (414)
....+.|.+.+...++.+|+|..||+|.+...+.+. . ...++|+|+++ +...|+.++.-+
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 445566777777777889999999999998877653 1 02589999995 778888777654
Q ss_pred CCCCCc----EEEEEcccccc--cCCCceeEEEEcCCccccCC-----------hhhHHHHHHHHHhccCCCeEEEc
Q 015038 109 PSLGER----ITVIKGKVEEV--ELPEKADILISEPMGTLLVN-----------ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 109 ~~l~~~----i~vi~~d~~~~--~~~~~fDvIis~~~~~~l~~-----------e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+ .... -.+..++.... ....+||+|++||+...-.. ...--.++..+.+.|++||++.+
T Consensus 230 ~-~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 230 D-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp T-CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred c-ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 4 2211 12333333321 12257999999998532211 11122467778899999998743
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.24 E-value=0.00054 Score=58.26 Aligned_cols=100 Identities=25% Similarity=0.377 Sum_probs=62.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEc---cccc--
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKG---KVEE-- 124 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~---d~~~-- 124 (414)
.++.+.....+|.+||-+|||. |.++..++++ |+++|+++|.++ .++.|++. + .. .++.. +..+
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----G---a~-~vi~~~~~~~~~~~ 89 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----G---AD-LTLNRRETSVEERR 89 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----T---CS-EEEETTTSCHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----c---ce-EEEeccccchHHHH
Confidence 4454544556889999999986 8888888876 877899999984 66766653 2 11 22322 1111
Q ss_pred -----ccCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 125 -----VELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 125 -----~~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
......+|+|+-. .+ .+. .+....+.|++||+++..
T Consensus 90 ~~i~~~~~~~g~Dvvid~-vG----~~~----~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 90 KAIMDITHGRGADFILEA-TG----DSR----ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHHTTTSCEEEEEEC-SS----CTT----HHHHHHHHEEEEEEEEEC
T ss_pred HHHHHhhCCCCceEEeec-CC----chh----HHHHHHHHhcCCCEEEEE
Confidence 1123469999842 22 122 234445889999998643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.22 E-value=9.6e-05 Score=66.18 Aligned_cols=113 Identities=14% Similarity=0.058 Sum_probs=64.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 53 AAVIENRADFIGRVVVDVGAGSGILSLFAAQAG-AKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g-~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
..|.+.....++.+|+|+|||.|..+..++... ...|.|+++- +..+. -......+ .+-+++...+......+++
T Consensus 56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~--~ni~~~~~~~dv~~l~~~~ 132 (257)
T d2p41a1 56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYG--WNLVRLQSGVDVFFIPPER 132 (257)
T ss_dssp HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTT--GGGEEEECSCCTTTSCCCC
T ss_pred HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Cccccccc--cccccchhhhhHHhcCCCc
Confidence 344444445566799999999999999999763 2367888773 21000 00000100 1224444333222223578
Q ss_pred eeEEEEcCCccccCC---hhhHHHHHHHHHhccCCCeEEEc
Q 015038 131 ADILISEPMGTLLVN---ERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 131 fDvIis~~~~~~l~~---e~~l~~~l~~~~r~LkpgG~lip 168 (414)
+|+|+|+.-.+.... +...-.++..+.++|+|||.++.
T Consensus 133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 999999853221111 11122567778899999998754
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00051 Score=64.26 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCCEEEEECCCccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV 125 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~ 125 (414)
.++..|||||+|.|.++..+.+. ++++|+++|+++ .++..++... .++++++++|+..+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeCchhhc
Confidence 35679999999999999999887 567999999995 6677776543 24689999998765
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.81 E-value=0.0056 Score=51.36 Aligned_cols=100 Identities=25% Similarity=0.277 Sum_probs=64.8
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc---
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE--- 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--- 126 (414)
.++.+.....++.+||-+|||. |.++..++++ |+.+|+++|.++ -++.|++. + . .+++..+-.++.
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----G-a---~~~i~~~~~~~~~~i 89 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----G-A---THVINSKTQDPVAAI 89 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----T-C---SEEEETTTSCHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----C-C---eEEEeCCCcCHHHHH
Confidence 3444555567889999999986 6677777765 888899999985 66777653 1 1 234443333221
Q ss_pred ---CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 ---LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ---~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++.+|+|+-. .+ . ...++.+.++++|+|+++..
T Consensus 90 ~~~t~gg~D~vid~-~G----~----~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 90 KEITDGGVNFALES-TG----S----PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp HHHTTSCEEEEEEC-SC----C----HHHHHHHHHTEEEEEEEEEC
T ss_pred HHHcCCCCcEEEEc-CC----c----HHHHHHHHhcccCceEEEEE
Confidence 13579999842 11 2 33445567899999998754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.0017 Score=54.48 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc---------c
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV---------E 126 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---------~ 126 (414)
....++.+||-+|||. |.++..++++ |+++|+++|.++ -++.|++. + . + .++..+-.+. .
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----G-a-~--~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----G-A-D--LVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T-C-S--EEEECSSCCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----C-C-c--cccccccccccccccccccc
Confidence 3456788999999987 6777777765 888999999995 66666653 2 1 1 1222221111 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
....+|+|+-.. .. +..++...+.+++||+++..-
T Consensus 94 ~g~g~Dvvid~~-----G~----~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 94 LGCKPEVTIECT-----GA----EASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp HTSCCSEEEECS-----CC----HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCceEEEecc-----CC----chhHHHHHHHhcCCCEEEEEe
Confidence 235789988521 12 234455668899999987654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.68 E-value=0.0003 Score=60.96 Aligned_cols=103 Identities=16% Similarity=0.012 Sum_probs=64.2
Q ss_pred hcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc-------ccC
Q 015038 58 NRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE-------VEL 127 (414)
Q Consensus 58 ~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~-------~~~ 127 (414)
.....++.+||.+|||. |.++..++++ |+.+|+++|.++ .++.|++. + . -.++...-.+ +..
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G---a-~~~~~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G---F-EIADLSLDTPLHEQIAALLG 91 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T---C-EEEETTSSSCHHHHHHHHHS
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c---c-cEEEeCCCcCHHHHHHHHhC
Confidence 45567899999999998 7777777765 888999999995 66776653 2 1 2233221111 112
Q ss_pred CCceeEEEEcCCcc-------ccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGT-------LLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~-------~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
...+|+++-. .+. ...........++.+.+.++|+|++...
T Consensus 92 g~g~D~vid~-vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 92 EPEVDCAVDA-VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp SSCEEEEEEC-CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCcEEEEEC-ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 3469998842 221 1000111234567778899999998644
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.61 E-value=0.007 Score=50.91 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccc-c----
Q 015038 54 AVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEE-V---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~-~---- 125 (414)
++.+.....++.+||-+|||. |.++..++++ |+++|+++|.++ -++.|++. + . ..++...-.+ .
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----G-a---~~~i~~~~~~~~~~~~ 90 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----G-A---TDCLNPRELDKPVQDV 90 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T-C---SEEECGGGCSSCHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----C-C---CcccCCccchhhhhhh
Confidence 344455567889999999998 8898888887 888999999984 55666653 2 1 1233221111 1
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCC-eEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPM-GKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~Lkpg-G~lip~ 169 (414)
...+.+|+++-. .+ . ...+....+.+++| |.++..
T Consensus 91 ~~~~~~~G~d~vie~-~G----~----~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 91 ITELTAGGVDYSLDC-AG----T----AQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHHHTSCBSEEEES-SC----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhhhhcCCCcEEEEe-cc----c----chHHHHHHHHhhcCCeEEEec
Confidence 123579999841 11 2 33455666889996 888754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.58 E-value=0.00043 Score=58.79 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=61.6
Q ss_pred HhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------c
Q 015038 57 ENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------E 126 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~ 126 (414)
+.....++.+||-+|||. |.++..+++. |+++|+++|.++ -++.|++. + . ..++.-+-.++ .
T Consensus 21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----G-a---~~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----G-A---TDILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----T-C---SEEECGGGSCHHHHHHHHT
T ss_pred HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----C-c---cccccccchhHHHHHHHHh
Confidence 334567888999999997 8888888887 777899999985 56666653 1 1 12332221211 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
....+|+|+-.. + .. ..++...+.++|+|.++..
T Consensus 93 ~g~G~D~vid~~-g----~~----~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 93 NGKGVDRVIMAG-G----GS----ETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp TTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred hccCcceEEEcc-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 124599988521 1 11 2234445789999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.58 E-value=0.0095 Score=49.36 Aligned_cols=95 Identities=26% Similarity=0.364 Sum_probs=59.8
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc-ccc---------
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV-EEV--------- 125 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~--------- 125 (414)
....++.+||-+|||. |.++..++++ |+ +|+++|.++ -++.|++. .....+..... .+.
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~-------ga~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC-------GADVTLVVDPAKEEESSIIERIRS 93 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-------TCSEEEECCTTTSCHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc-------CCcEEEeccccccccchhhhhhhc
Confidence 3456788999999995 7888877776 65 799999994 66777663 12223322211 111
Q ss_pred cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 126 ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 126 ~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
.....+|+|+-. .+ . ...+..+.++|+|+|+++..-
T Consensus 94 ~~g~g~D~vid~-~g----~----~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 94 AIGDLPNVTIDC-SG----N----EKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp HSSSCCSEEEEC-SC----C----HHHHHHHHHHSCTTCEEEECS
T ss_pred ccccCCceeeec-CC----C----hHHHHHHHHHHhcCCceEEEe
Confidence 113568999842 11 2 233455568899999987543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.57 E-value=0.0042 Score=55.49 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCC-----------------------------------------CeEEEEeCh-HHHH
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGA-----------------------------------------KHVYAVEAS-EMAE 99 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~-----------------------------------------~~V~gvD~s-~~~~ 99 (414)
..+..++|-.||+|.+.+.+|.... .+++|.|++ .+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 3445799999999999888875310 135677887 4666
Q ss_pred HH---HHHHHhCCCCCCcEEEEEccccccc------CCCceeEEEEcCCcc-ccC-----ChhhHHHHHHHHHhccCCCe
Q 015038 100 YA---RKLIAGNPSLGERITVIKGKVEEVE------LPEKADILISEPMGT-LLV-----NERMLETYVIARDRFLVPMG 164 (414)
Q Consensus 100 ~a---~~~~~~n~~l~~~i~vi~~d~~~~~------~~~~fDvIis~~~~~-~l~-----~e~~l~~~l~~~~r~LkpgG 164 (414)
.| ++++...+ +.+.|.+...|+.+.. .+...++||+||+.- -+. ..+.+..+...+.+.+....
T Consensus 129 ~A~~~r~n~~~Ag-l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 129 AARRLRERLTAEG-GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHHTT-SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHcC-CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 66 45777776 8889999999986643 245689999999833 332 12335666677777776555
Q ss_pred EEEcc
Q 015038 165 KMFPS 169 (414)
Q Consensus 165 ~lip~ 169 (414)
.++++
T Consensus 208 ~~~it 212 (249)
T d1o9ga_ 208 VIAVT 212 (249)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.30 E-value=0.017 Score=47.98 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc------cCCCce
Q 015038 61 DFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV------ELPEKA 131 (414)
Q Consensus 61 ~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~------~~~~~f 131 (414)
..++.+||-+|+|. |.++..++++ |+.+|+++|.++ -++.+++. + . ..++..+-..+ .....+
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----g-a---~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----G-A---DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----T-C---SEEEETTSCHHHHHHHHTTTCCE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----c-c---ceeecCcccHHHHHHHhhCCCCc
Confidence 46788999999987 6676777664 888999999985 55666542 2 1 23443322111 123469
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|+-.. .. ...+....+.|+++|+++..
T Consensus 102 d~vid~~-----g~----~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 102 NVAMDFV-----GS----QATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEESS-----CC----HHHHHHGGGGEEEEEEEEEC
T ss_pred eEEEEec-----Cc----chHHHHHHHHHhCCCEEEEE
Confidence 9998521 12 23345667899999998754
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.26 E-value=0.0048 Score=52.02 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=61.1
Q ss_pred HHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-ccccc----
Q 015038 54 AVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-KVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~---- 125 (414)
++.+.....++.+||-+|||. |.++..++++ |+++|+++|.+ +-++.|++.=. ..+++. +....
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA--------~~~in~~~~~~~~~~~ 91 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA--------TECISPKDSTKPISEV 91 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC--------SEEECGGGCSSCHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC--------cEEECccccchHHHHH
Confidence 444555567899999999996 6667777765 77899999998 57788877521 123321 11110
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.....+|+++-.. .. ...+...+..+++.+|+++..
T Consensus 92 ~~~~~g~G~d~vi~~~-----g~---~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 92 LSEMTGNNVGYTFEVI-----GH---LETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHHHTSCCCEEEECS-----CC---HHHHHHHHTTSCTTTCEEEEC
T ss_pred HHHhccccceEEEEeC-----Cc---hHHHHHHHHHhhcCCeEEEEE
Confidence 1235699888421 11 233334455556676887654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.20 E-value=0.021 Score=47.69 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=38.7
Q ss_pred HHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHH
Q 015038 54 AVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~ 103 (414)
++.+.....++.+||-+|||. |.++..++++ |+++|+++|.++ -++.|++
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 344555667899999999997 6667777765 888999999984 6777765
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.99 E-value=0.017 Score=52.39 Aligned_cols=66 Identities=23% Similarity=0.252 Sum_probs=51.4
Q ss_pred EEEEECCCccHHHHHHHHcCCCeEEEEeChHH-HHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcCC
Q 015038 66 VVVDVGAGSGILSLFAAQAGAKHVYAVEASEM-AEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEPM 139 (414)
Q Consensus 66 ~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~-~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~~ 139 (414)
+|||+-||.|.+++-+-++|.+.+.++|+++. ++..+.+ .. -.++.+|+.++... .++|+++..++
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N------~~--~~~~~~Di~~~~~~~~~~~dll~~g~P 70 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN------HS--AKLIKGDISKISSDEFPKCDGIIGGPP 70 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHH------CC--SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH------CC--CCCccCChhhCCHhHcccccEEeeccc
Confidence 69999999999999998999988889999963 3444443 22 25678999988543 47999998776
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0037 Score=52.13 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=60.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc-ccccc--c
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG-KVEEV--E 126 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~-d~~~~--~ 126 (414)
.++.. ....++.+||-+|+|. |.++..+++. |+ +|+++|.+ +.++.|++. + . + .++.. +-.+. .
T Consensus 18 ~al~~-~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----G-a-~--~~i~~~~~~~~~~~ 87 (168)
T d1piwa2 18 SPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----G-A-D--HYIATLEEGDWGEK 87 (168)
T ss_dssp HHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----T-C-S--EEEEGGGTSCHHHH
T ss_pred HHHHH-hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----C-C-c--EEeeccchHHHHHh
Confidence 34433 3457889999999994 8888888876 77 69999998 467777664 1 1 1 23322 11111 2
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..+.+|+|+... +.... . .+....+.|+|+|+++..
T Consensus 88 ~~~~~d~vi~~~-~~~~~--~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 88 YFDTFDLIVVCA-SSLTD--I----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp SCSCEEEEEECC-SCSTT--C----CTTTGGGGEEEEEEEEEC
T ss_pred hhcccceEEEEe-cCCcc--c----hHHHHHHHhhccceEEEe
Confidence 236799888521 11110 0 012345789999998754
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.61 E-value=0.031 Score=51.00 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=64.8
Q ss_pred CCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC--CceeEEEEcC
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP--EKADILISEP 138 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~--~~fDvIis~~ 138 (414)
..+.+|||+.||.|.+++.+.++|...|.++|+++ .++..+.+... ..++|+.++... ..+|+++..+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~---------~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---------KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---------CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC---------CCcCchhcCchhhcceeeeeeccc
Confidence 35679999999999999999999998889999996 44555555422 125788887543 4799999877
Q ss_pred Ccc---------ccCCh--hhHHHHHHHHHhccCCCeEEE
Q 015038 139 MGT---------LLVNE--RMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 139 ~~~---------~l~~e--~~l~~~l~~~~r~LkpgG~li 167 (414)
+-. ...++ ..+..+++.+ +.++|.-.++
T Consensus 80 PCq~fS~ag~~~g~~d~r~~l~~~~~~~i-~~~kP~~~~l 118 (327)
T d2c7pa1 80 PCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPKVVFM 118 (327)
T ss_dssp CCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCSEEEE
T ss_pred ccchhhhhhhhcCCcccchhHHHHHHHHH-hccCCcEEec
Confidence 611 11111 2244444433 5678876554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.01 E-value=0.026 Score=49.35 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=43.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIA 106 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~ 106 (414)
+.+.+.+... .+|..|||.-||+|..+.++.+.|- +.+|+|++ +.++.|++++.
T Consensus 201 L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 201 LIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 3344444443 5788999999999999999998875 79999999 58899998875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.94 E-value=0.064 Score=44.06 Aligned_cols=94 Identities=20% Similarity=0.224 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc-------cC
Q 015038 59 RADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV-------EL 127 (414)
Q Consensus 59 ~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~-------~~ 127 (414)
....++.+||-+|| | .|.++..++++ |..+|+++|.++ -.+.+++. + . . .++..+-.+. ..
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----G-a--~-~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----G-A--D-YVINASMQDPLAEIRRITE 94 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----T-C--S-EEEETTTSCHHHHHHHHTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----C-C--c-eeeccCCcCHHHHHHHHhh
Confidence 45678899999997 4 36666666664 878999999984 55666653 2 1 1 3333333222 12
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
++.+|+|+-.. .. ...++...+.++|+|+++..
T Consensus 95 ~~~~d~vid~~-----g~----~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 95 SKGVDAVIDLN-----NS----EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TSCEEEEEESC-----CC----HHHHTTGGGGEEEEEEEEEC
T ss_pred cccchhhhccc-----cc----chHHHhhhhhcccCCEEEEe
Confidence 35699998522 12 23334556899999998755
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.91 E-value=0.012 Score=49.12 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC-CceeEEEEc
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP-EKADILISE 137 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~-~~fDvIis~ 137 (414)
.++.+|+-||+|. |..+...|+. |+ +|+++|.+ +.++..+..... +++....+-+.+... ...|+||+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~------~~~~~~~~~~~l~~~~~~aDivI~a 102 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIGA 102 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc------cceeehhhhhhHHHhhccCcEEEEe
Confidence 4578999999997 7777776665 76 69999999 466666655433 356665544443211 478999985
Q ss_pred CCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 138 PMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 138 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
... +....+.-+-+++.+.+|||.+++
T Consensus 103 ali---pG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 103 VLV---PGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCC---TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred eec---CCcccCeeecHHHHhhcCCCcEEE
Confidence 432 222212222244557899999875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.028 Score=46.68 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=59.8
Q ss_pred HHHHhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc----
Q 015038 54 AVIENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---- 125 (414)
++.+.....++.+||-.|+ | .|.+++.++++ |+ +|++++.++ ..+.+++ .+ .. .++.-.-.++
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~G-a~---~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NG-AH---EVFNHREVNYIDKI 89 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TT-CS---EEEETTSTTHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cC-cc---cccccccccHHHHh
Confidence 3444445568899999996 4 47888888876 66 699988774 5555554 33 21 2332221111
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++.+|+|+... + ...+....+.|+|+|+++..
T Consensus 90 ~~~t~~~g~d~v~d~~-g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEML-A---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESC-H---------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeecc-c---------HHHHHHHHhccCCCCEEEEE
Confidence 1235799999631 1 12345566889999998754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.89 E-value=0.069 Score=43.97 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcc-ccc-c--
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGK-VEE-V-- 125 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d-~~~-~-- 125 (414)
.++.+.....++.+||-.|||. |.++..++++ |++.|+++|.++ ..+.+++. + . -.++..+ -.+ .
T Consensus 18 ~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----G-a---~~~i~~~~~~~~~~~ 89 (176)
T d2fzwa2 18 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----G-A---TECINPQDFSKPIQE 89 (176)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----T-C---SEEECGGGCSSCHHH
T ss_pred HHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----C-C---cEEEeCCchhhHHHH
Confidence 3444555567899999999984 5566666664 888999999985 66666653 1 1 1233221 111 1
Q ss_pred ----cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 126 ----ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 126 ----~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
..++.+|+|+-.. + . ...++....++++||.++
T Consensus 90 ~~~~~~~~g~D~vid~~-G----~----~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 90 VLIEMTDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHHHHTTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEE
T ss_pred HHHHHcCCCCcEeeecC-C----C----HHHHHHHHHhhcCCceeE
Confidence 1235799999521 1 2 234455667888886654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.87 E-value=0.068 Score=43.68 Aligned_cols=92 Identities=21% Similarity=0.215 Sum_probs=56.5
Q ss_pred cCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------CCC
Q 015038 59 RADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------LPE 129 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------~~~ 129 (414)
....++.+||-+|||. |.++..+++. | .+|+++|.++ -++.+++. + . -.++..+-.+.. ..+
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~----G-a---~~~i~~~~~~~~~~~~~~~~g 93 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKL----G-A---SLTVNARQEDPVEAIQRDIGG 93 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHT----T-C---SEEEETTTSCHHHHHHHHHSS
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhcc----C-c---cccccccchhHHHHHHHhhcC
Confidence 4557888999999987 8888888876 6 5899999984 66666542 2 1 133433222211 112
Q ss_pred ceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 130 KADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 130 ~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++|++.. . ...+....+.|+|+|+++..
T Consensus 94 ~~~~i~~~~------~----~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 94 AHGVLVTAV------S----NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEEECCS------C----HHHHHHHHTTEEEEEEEEEC
T ss_pred Ccccccccc------c----chHHHHHHHHhcCCcEEEEE
Confidence 344444311 1 12345566899999998764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.055 Score=44.50 Aligned_cols=98 Identities=23% Similarity=0.240 Sum_probs=59.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc--cC
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV--EL 127 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~--~~ 127 (414)
.++. .....++.+||-+|||. |.++..++++ |+ +++++|.+ +-.+.+++. + . + .++...-.+. ..
T Consensus 21 ~al~-~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----G-a-d--~~i~~~~~~~~~~~ 90 (168)
T d1uufa2 21 SPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----G-A-D--EVVNSRNADEMAAH 90 (168)
T ss_dssp HHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----T-C-S--EEEETTCHHHHHTT
T ss_pred HHHH-HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----C-C-c--EEEECchhhHHHHh
Confidence 3443 34567899999999986 8888888876 66 57788887 455666553 1 1 1 2333222211 12
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.+.+|+++-.. + .+..+ ....+.|+++|+++..
T Consensus 91 ~~~~D~vid~~-g----~~~~~----~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 91 LKSFDFILNTV-A----APHNL----DDFTTLLKRDGTMTLV 123 (168)
T ss_dssp TTCEEEEEECC-S----SCCCH----HHHHTTEEEEEEEEEC
T ss_pred cCCCceeeeee-e----cchhH----HHHHHHHhcCCEEEEe
Confidence 25799988532 1 11112 3345799999998754
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.22 E-value=0.027 Score=50.83 Aligned_cols=57 Identities=19% Similarity=0.104 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhC
Q 015038 50 TYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGN 108 (414)
Q Consensus 50 ~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n 108 (414)
.+.+.+.+... .+|..|||.-||+|..+.++.+.|- +.+|+|++ +.++.|++++..+
T Consensus 238 ~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 238 KLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred HHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 34444555443 5789999999999999999999876 79999999 5889888876553
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.025 Score=51.76 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=50.7
Q ss_pred CCEEEEECCCccHHHHHHHHcCCC--eEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccCC----CceeEEEE
Q 015038 64 GRVVVDVGAGSGILSLFAAQAGAK--HVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVELP----EKADILIS 136 (414)
Q Consensus 64 ~~~VLDiGcGtG~ls~~~a~~g~~--~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~----~~fDvIis 136 (414)
+.+|+|+.||.|.+++.+.++|.. -|.++|+++ .++..+.+. ....++.+|+.++... ..+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-------~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 457999999999999888888874 478999996 444444442 1245777888877532 36999998
Q ss_pred cCC
Q 015038 137 EPM 139 (414)
Q Consensus 137 ~~~ 139 (414)
.++
T Consensus 75 gpP 77 (343)
T d1g55a_ 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred ecc
Confidence 777
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.85 E-value=0.28 Score=44.25 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCC-CCcEEEEEccccc
Q 015038 46 VRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSL-GERITVIKGKVEE 124 (414)
Q Consensus 46 ~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l-~~~i~vi~~d~~~ 124 (414)
.|+..+-+.+.+..... ...|+.+|||-=.-...+...+..+++=||..++++.-++.+.+++.. ..+..++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVIDG-IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhhC-CCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 45444444454444332 345666999986665544322233566666667887777777765422 3567788888765
Q ss_pred c-c--C------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcccc
Q 015038 125 V-E--L------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSVG 171 (414)
Q Consensus 125 ~-~--~------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 171 (414)
- . + ++..-+++++.+..++. +.....+++.+.....||+.++++..
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL~-~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYLP-ATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccCC-HHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 2 1 0 23456788888887775 45588999999999999999987643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.72 E-value=0.041 Score=45.01 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=54.5
Q ss_pred CCCCCCEEEEECCCc-cHHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccccccc------CCCce
Q 015038 60 ADFIGRVVVDVGAGS-GILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVE------LPEKA 131 (414)
Q Consensus 60 ~~~~~~~VLDiGcGt-G~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~------~~~~f 131 (414)
...++.+||-.|||. |.++..+++....+|++++.++ -++.+++ .+ . -.++...-.+.. .++.+
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~G-a---~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LG-A---DLVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT-C---SEEECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cC-c---ceecccccchhhhhcccccCCCc
Confidence 456889999999997 7777777776333799999984 5565554 22 1 122221111111 12344
Q ss_pred eEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 132 DILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 132 DvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+|++ .. . ...+....+.|+|+|.++..
T Consensus 96 ~~v~~-~~-----~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVT-AV-----S----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEES-SC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred eEEee-cC-----C----HHHHHHHHHHhccCCceEec
Confidence 44443 21 2 23345566889999998764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.72 E-value=0.072 Score=47.01 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHh
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAG 107 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~ 107 (414)
+...+.+... .+|..|||.-||+|..+.++.+.|- +.+|+|++ ...+.|++++..
T Consensus 196 L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 196 VIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 3444545443 5789999999999999999999875 79999999 477899988875
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.03 E-value=0.3 Score=39.96 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCc-cHHHHHHHH-cCCCeEEEEeChH-HHHHHHHH
Q 015038 53 AAVIENRADFIGRVVVDVGAGS-GILSLFAAQ-AGAKHVYAVEASE-MAEYARKL 104 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGt-G~ls~~~a~-~g~~~V~gvD~s~-~~~~a~~~ 104 (414)
.++.+.....++.+||-+|+|. |.++..+++ .|+.+|+++|.++ -.+.+++.
T Consensus 18 ~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 18 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 3444555567899999999985 334444444 4778999999984 66666553
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.62 E-value=0.2 Score=46.53 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=59.2
Q ss_pred CEEEEECCCccHHHHHHHHc------------CC-----CeEEEEeCh--HHHHHHHHHHHhCCCCCCc--EEEEEcccc
Q 015038 65 RVVVDVGAGSGILSLFAAQA------------GA-----KHVYAVEAS--EMAEYARKLIAGNPSLGER--ITVIKGKVE 123 (414)
Q Consensus 65 ~~VLDiGcGtG~ls~~~a~~------------g~-----~~V~gvD~s--~~~~~a~~~~~~n~~l~~~--i~vi~~d~~ 123 (414)
-+|.|+||.+|..++.+... +. -+|+--|.. +.-...+.. ........+ +.-+.+.+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L-~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSL-PIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTT-TTSCSCTTCEEEEEEESCSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhc-cccccCCCCeEEEecCCchh
Confidence 46999999999887543211 11 166777763 222222221 111101111 222334443
Q ss_pred cccCC-CceeEEEEcCCccccCC------------------------------hhhHHHHHHHHHhccCCCeEEEcc
Q 015038 124 EVELP-EKADILISEPMGTLLVN------------------------------ERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 124 ~~~~~-~~fDvIis~~~~~~l~~------------------------------e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.--+| ++.++++|..-.|++.. ..++..+|+.+.+-|+|||+|++.
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 32233 68999998655554421 134678999999999999999874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.53 E-value=0.037 Score=46.63 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCc-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 015038 62 FIGRVVVDVGAGS-GILSLFAAQA-GAKHVYAVEAS-EMAEYARKL 104 (414)
Q Consensus 62 ~~~~~VLDiGcGt-G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~ 104 (414)
.++.+||-||+|. |..+...|.. |+ +|+++|.+ ..++..+..
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESL 71 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHT
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence 3567999999998 6666666654 77 79999998 455555553
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.45 E-value=0.31 Score=44.69 Aligned_cols=120 Identities=21% Similarity=0.163 Sum_probs=76.0
Q ss_pred hhhhHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHhCC-------------
Q 015038 45 YVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEAS--EMAEYARKLIAGNP------------- 109 (414)
Q Consensus 45 ~~r~~~~~~ai~~~~~~~~~~~VLDiGcGtG~ls~~~a~~g~~~V~gvD~s--~~~~~a~~~~~~n~------------- 109 (414)
++|+..+...+.+.+...+...|+-+|||.=.....+..... ++.-+|++ ++++.-++.+.+++
T Consensus 78 ~~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~ 156 (328)
T d1rjda_ 78 YLRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDT 156 (328)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhcccccccc
Confidence 577777777776665545567899999999877777654433 35566665 45543333333210
Q ss_pred ------CCCCcEEEEEcccccccC----------CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEE
Q 015038 110 ------SLGERITVIKGKVEEVEL----------PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 110 ------~l~~~i~vi~~d~~~~~~----------~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
...++...+.+|+.+... ++..-++++|.+..++.. .....+++.+.+.... |.++
T Consensus 157 ~~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~-~~~~~li~~~~~~f~~-~~~i 228 (328)
T d1rjda_ 157 AKSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHN-NESQLLINTIMSKFSH-GLWI 228 (328)
T ss_dssp CCTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH-HHHHHHHHHHHHHCSS-EEEE
T ss_pred ccccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCH-HHHHHHHHHHHHhCCC-ceEE
Confidence 013567888889877521 133458999998888764 4467888887776654 4443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.11 E-value=0.43 Score=38.64 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=53.8
Q ss_pred EEEEECCCc--cHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCcc
Q 015038 66 VVVDVGAGS--GILSLFAAQAGA-KHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGT 141 (414)
Q Consensus 66 ~VLDiGcGt--G~ls~~~a~~g~-~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~ 141 (414)
+|+=||||. |.++..+.+.|. .+|+|+|.+ +.++.|++. + . +.....+..... ....|+|+...+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~-~---~~~~~~~~~~~~-~~~~dlIila~p-- 71 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----G-I---IDEGTTSIAKVE-DFSPDFVMLSSP-- 71 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----T-S---CSEEESCGGGGG-GTCCSEEEECSC--
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----h-c---chhhhhhhhhhh-ccccccccccCC--
Confidence 588899986 456667777774 489999999 466666653 1 1 112222222211 135799986433
Q ss_pred ccCChhhHHHHHHHHHhccCCCeEE
Q 015038 142 LLVNERMLETYVIARDRFLVPMGKM 166 (414)
Q Consensus 142 ~l~~e~~l~~~l~~~~r~LkpgG~l 166 (414)
......++..+...++++..+
T Consensus 72 ----~~~~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 72 ----VRTFREIAKKLSYILSEDATV 92 (171)
T ss_dssp ----HHHHHHHHHHHHHHSCTTCEE
T ss_pred ----chhhhhhhhhhhccccccccc
Confidence 334667778888889887655
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.25 Score=43.45 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
+++++||-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ ...++..+.+|+.+.+.
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999999884 4566677788 69999998 46655555555543 45678999999977421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 86 ~~g~iD~lVnnA 97 (257)
T d1xg5a_ 86 QHSGVDICINNA 97 (257)
T ss_dssp HHCCCSEEEECC
T ss_pred hcCCCCEEEecc
Confidence 15799999764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.88 E-value=0.45 Score=39.18 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHHHhcCCCCCCEEEEECCCc--cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc----
Q 015038 54 AVIENRADFIGRVVVDVGAGS--GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt--G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---- 125 (414)
++.+.....++.+||-.|+|. |..+..+++. |+ +|+++..++ ..+.+++. + .. .++.-+-++.
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~----G---a~-~vi~~~~~~~~~~~ 90 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQI----G---FD-AAFNYKTVNSLEEA 90 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT----T---CS-EEEETTSCSCHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhh----h---hh-hhcccccccHHHHH
Confidence 444555567899999888865 5667777776 55 799999874 55554442 2 11 2233222221
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
..++.+|+|+-. . . ...+....+.|+++|.++..
T Consensus 91 ~~~~~~~Gvd~v~D~-v-----G----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 91 LKKASPDGYDCYFDN-V-----G----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHHCTTCEEEEEES-S-----C----HHHHHHHGGGEEEEEEEEEC
T ss_pred HHHhhcCCCceeEEe-c-----C----chhhhhhhhhccCCCeEEee
Confidence 123579999842 1 1 22345667999999998753
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.74 E-value=0.26 Score=43.38 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+.... ...++..+.+|+.+...
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETA-PDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHC-TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhC-CCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 578999999999884 5777888898 69999998 45555544443332 34578899999877521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 80 ~~G~iDiLVnnA 91 (258)
T d1iy8a_ 80 RFGRIDGFFNNA 91 (258)
T ss_dssp HHSCCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 15799999763
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.66 E-value=0.81 Score=40.14 Aligned_cols=73 Identities=32% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS--EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s--~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
.+|+++|--|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+..++ .++.++.+|+.+.+
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC---CceeeEeCCCCCHHHHHHHHHHHH
Confidence 578999999999884 5677778888 59998886 46666666666644 47899999997742
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..++.|+++.+.
T Consensus 92 ~~~g~idilV~na 104 (272)
T d1g0oa_ 92 KIFGKLDIVCSNS 104 (272)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCcccccc
Confidence 115789999764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.44 Score=41.52 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
...|+++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++...+.+... ..++..+.+|+.+.+.
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGL---GAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 4678999999999984 5777888898 59999999 5665555555553 3579999999987631
Q ss_pred --CCceeEEEEcCC
Q 015038 128 --PEKADILISEPM 139 (414)
Q Consensus 128 --~~~fDvIis~~~ 139 (414)
-+..|++|.+.-
T Consensus 80 ~~~g~idilinnag 93 (244)
T d1yb1a_ 80 AEIGDVSILVNNAG 93 (244)
T ss_dssp HHTCCCSEEEECCC
T ss_pred HHcCCCceeEeecc
Confidence 257999997643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=91.37 E-value=0.6 Score=37.59 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=53.9
Q ss_pred EEEEECCCc--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCceeEEEEcCCccc
Q 015038 66 VVVDVGAGS--GILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELPEKADILISEPMGTL 142 (414)
Q Consensus 66 ~VLDiGcGt--G~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~fDvIis~~~~~~ 142 (414)
+|.=||+|. +.++..+.+.|. +|++.|.+ +.++.|++ .+ . +.....+.+. -...|+|+...+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~-~---~~~~~~~~~~---~~~~DiIilavp--- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQ-L---VDEAGQDLSL---LQTAKIIFLCTP--- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TT-S---CSEEESCGGG---GTTCSEEEECSC---
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hh-c---cceeeeeccc---ccccccccccCc---
Confidence 577889985 356667777777 69999998 45555543 22 2 1112222222 257899986332
Q ss_pred cCChhhHHHHHHHHHhccCCCeEEE
Q 015038 143 LVNERMLETYVIARDRFLVPMGKMF 167 (414)
Q Consensus 143 l~~e~~l~~~l~~~~r~LkpgG~li 167 (414)
....+.+++.+...|+++.+++
T Consensus 67 ---~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 67 ---IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp ---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---Hhhhhhhhhhhhhhccccccee
Confidence 3446788888888888888664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.25 E-value=0.13 Score=42.35 Aligned_cols=92 Identities=18% Similarity=0.148 Sum_probs=55.3
Q ss_pred cCCCCCCEEEEECC-Cc-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEccc-ccccCCCceeE
Q 015038 59 RADFIGRVVVDVGA-GS-GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKV-EEVELPEKADI 133 (414)
Q Consensus 59 ~~~~~~~~VLDiGc-Gt-G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~-~~~~~~~~fDv 133 (414)
....++++||-.|+ |. |.++..++++ |+ +|++++.++ -++.+++ .+ . + ..+-..+. ......+.+|+
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lG-a-~-~~i~~~~~~~~~~~~~g~D~ 94 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LG-A-E-EAATYAEVPERAKAWGGLDL 94 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TT-C-S-EEEEGGGHHHHHHHTTSEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cc-c-c-eeeehhhhhhhhhccccccc
Confidence 45578899999885 43 6777777776 66 799999874 4555554 22 2 1 11211111 11223357999
Q ss_pred EEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 134 LISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 134 Iis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
|+- ..+ + .+ ....+.|+|+|+++..
T Consensus 95 v~d-~~G-----~-~~----~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 95 VLE-VRG-----K-EV----EESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEE-CSC-----T-TH----HHHHTTEEEEEEEEEC
T ss_pred ccc-ccc-----h-hH----HHHHHHHhcCCcEEEE
Confidence 885 222 1 12 3345799999998754
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.21 E-value=0.52 Score=41.31 Aligned_cols=73 Identities=16% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.+++++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+ .++.++.+|+.+..
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEEeeCCCHHHHHHHHHHHHH
Confidence 579999999998874 4666777788 69999998 56655555555543 57888999987642
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
+..+.|++|.+.
T Consensus 82 ~~~~~idilvnnA 94 (259)
T d2ae2a_ 82 HFHGKLNILVNNA 94 (259)
T ss_dssp HTTTCCCEEEECC
T ss_pred HhCCCceEEEECC
Confidence 124799999763
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.12 E-value=0.28 Score=43.40 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=56.9
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.+++|++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.+.+....++..+.+|+.+...
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 80 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 80 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4689999999998873 4667777888 69999998 56776666666654234579999999877421
Q ss_pred --CCceeEEEEc
Q 015038 128 --PEKADILISE 137 (414)
Q Consensus 128 --~~~fDvIis~ 137 (414)
-++.|++|.+
T Consensus 81 ~~~g~iDilvnn 92 (272)
T d1xkqa_ 81 KQFGKIDVLVNN 92 (272)
T ss_dssp HHHSCCCEEEEC
T ss_pred HHhCCceEEEeC
Confidence 1579999976
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.07 Score=44.09 Aligned_cols=97 Identities=16% Similarity=0.032 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCCEEEEECCCc--cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccc----
Q 015038 54 AVIENRADFIGRVVVDVGAGS--GILSLFAAQA-GAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt--G~ls~~~a~~-g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---- 125 (414)
++.+.....++.+||-.|+|. |.++..+|+. |+ +|++++.|+ ..+.+++. + - + .++..+-.++
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----G-a-~--~vi~~~~~d~~~~v 89 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----G-A-W--QVINYREEDLVERL 89 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----T-C-S--EEEETTTSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----C-C-e--EEEECCCCCHHHHH
Confidence 344444556789999997765 6677777776 66 799999994 66666653 2 1 1 3343222222
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.-+..+|+|+-..-+ . .+....+.|+++|.++..
T Consensus 90 ~~~t~g~g~d~v~d~~g~------~----~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 90 KEITGGKKVRVVYDSVGR------D----TWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHHTTTCCEEEEEECSCG------G----GHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCeEEEEeCccH------H----HHHHHHHHHhcCCeeeec
Confidence 123579998853211 1 123445789999987643
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.80 E-value=0.27 Score=40.92 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHhcCCCCC--CEEEEECC--CccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc--
Q 015038 55 VIENRADFIG--RVVVDVGA--GSGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-- 126 (414)
Q Consensus 55 i~~~~~~~~~--~~VLDiGc--GtG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-- 126 (414)
+.+.....++ ..||--|+ |.|..++.+|+. |++.|+++..+ +....+.+ ..+ . -.++...-.++.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~g-a---d~vi~~~~~~~~~~ 92 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELG-F---DAAVNYKTGNVAEQ 92 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSC-C---SEEEETTSSCHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---ccc-c---eEEeeccchhHHHH
Confidence 3343333444 78998884 458999999985 88888887776 43322222 222 1 233333222221
Q ss_pred ----CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 ----LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ----~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++.+|+|+-. .+ ...+....+.|+++|+++..
T Consensus 93 ~~~~~~~GvDvv~D~-vG---------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 93 LREACPGGVDVYFDN-VG---------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHCTTCEEEEEES-SC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhccCceEEEec-CC---------chhHHHHhhhccccccEEEe
Confidence 24579999842 21 12345567899999998743
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=90.75 E-value=0.65 Score=40.61 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=54.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.++|+||-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+ .++.++.+|+.+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CCceEEEeecCCHHHHHHHHHHHHH
Confidence 479999999998873 4666777788 69999998 46666666666643 56888899987642
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
..+..|+++.+.
T Consensus 80 ~~~g~idilinna 92 (258)
T d1ae1a_ 80 VFDGKLNILVNNA 92 (258)
T ss_dssp HTTSCCCEEEECC
T ss_pred HhCCCcEEEeccc
Confidence 124688988754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.69 E-value=0.4 Score=42.08 Aligned_cols=73 Identities=18% Similarity=0.072 Sum_probs=54.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----------- 126 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----------- 126 (414)
.+++++|--|+++|+ .+..+++.|+ +|+.++.+ +-++.+.+.+...+ .++..+.+|+.+..
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CceEEEeccCCCHHHHHHHHHHHHH
Confidence 479999999999885 5667777898 69999998 46655555555543 46899999987642
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
+.++.|++|.+.
T Consensus 82 ~~~g~idilvnnA 94 (259)
T d1xq1a_ 82 MFGGKLDILINNL 94 (259)
T ss_dssp HHTTCCSEEEEEC
T ss_pred HhCCCcccccccc
Confidence 125789999764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.98 E-value=0.34 Score=40.39 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred HhcCCCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----CC
Q 015038 57 ENRADFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE----LP 128 (414)
Q Consensus 57 ~~~~~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~----~~ 128 (414)
....+.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+..+. ++.+...|+.+.. .-
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF----KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH----TCCCEEEECCSHHHHHHHT
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc----chhhhhhhcccHHHHHHHh
Confidence 33457899999999988763 4666777787 69999998 55555544444332 2344445554331 12
Q ss_pred CceeEEEEcC
Q 015038 129 EKADILISEP 138 (414)
Q Consensus 129 ~~fDvIis~~ 138 (414)
+..|++|.+.
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 5789999763
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.68 E-value=0.43 Score=42.20 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
++|+++|--|+++|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+.+.+....++..+.+|+.+...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 579999999999884 4666777788 69999998 56666666666554234679999999877521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 14789999863
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.61 E-value=0.63 Score=40.72 Aligned_cols=73 Identities=25% Similarity=0.286 Sum_probs=55.3
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.++++++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+ .++..+.+|+.+...
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSVV 77 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3689999999998874 5667778898 59999998 56776666666543 578899999876421
Q ss_pred --CCceeEEEEc
Q 015038 128 --PEKADILISE 137 (414)
Q Consensus 128 --~~~fDvIis~ 137 (414)
-++.|++|.+
T Consensus 78 ~~~g~iDilVnn 89 (260)
T d1zema1 78 RDFGKIDFLFNN 89 (260)
T ss_dssp HHHSCCCEEEEC
T ss_pred HHhCCCCeehhh
Confidence 1579999976
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.41 E-value=0.56 Score=40.85 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
..++|++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+.+|+.+..
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999988873 3444555577 69999998 56666666666543 57899999998742
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
.-++.|++|.+.
T Consensus 83 ~~~g~iDilvnna 95 (251)
T d2c07a1 83 TEHKNVDILVNNA 95 (251)
T ss_dssp HHCSCCCEEEECC
T ss_pred HhcCCceeeeecc
Confidence 125799999864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.24 E-value=1.1 Score=39.02 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEe-Ch-HHHHHHHHHHHhCCCCCCcEEEEEccccccc---------
Q 015038 61 DFIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVE-AS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE--------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD-~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------- 126 (414)
...||+||-.|++.| .++..+++.|+. |+..+ .+ +.++.+.+.+...+ .++..+.+|+.+..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcC---CCceEecCCCCCHHHHHHHHHHH
Confidence 357899999998777 456667777885 66554 44 46677777777654 57899999997642
Q ss_pred --CCCceeEEEEcC
Q 015038 127 --LPEKADILISEP 138 (414)
Q Consensus 127 --~~~~fDvIis~~ 138 (414)
..+..|++|.+.
T Consensus 79 ~~~~g~idilinna 92 (259)
T d1ja9a_ 79 VSHFGGLDFVMSNS 92 (259)
T ss_dssp HHHHSCEEEEECCC
T ss_pred HHHcCCCcEEEecc
Confidence 115799999764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.04 E-value=0.51 Score=41.39 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=55.5
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
+++|++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+.-..++.++.+|+.+...
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999998874 4666777798 69999998 56666666555544234579999999976421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 15799999763
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=88.96 E-value=1.2 Score=41.09 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=47.9
Q ss_pred cCCCCCCEEEEECCCccHHHHHHHHc--------CCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccCCCc
Q 015038 59 RADFIGRVVVDVGAGSGILSLFAAQA--------GAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVELPEK 130 (414)
Q Consensus 59 ~~~~~~~~VLDiGcGtG~ls~~~a~~--------g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~~~ 130 (414)
....+...|+|+|+|+|.|+.-+++. -..+++.+|+|+.+...++..-.. ..++.++ .++++++ ..
T Consensus 75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~---~~~i~w~-~~~~~~~--~~ 148 (365)
T d1zkda1 75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG---IRNIHWH-DSFEDVP--EG 148 (365)
T ss_dssp TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT---CSSEEEE-SSGGGSC--CS
T ss_pred hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc---cccceec-cChhhcc--cC
Confidence 33334458999999999998766553 122689999997554443332221 1346554 4454433 33
Q ss_pred eeEEEEcCCccccC
Q 015038 131 ADILISEPMGTLLV 144 (414)
Q Consensus 131 fDvIis~~~~~~l~ 144 (414)
.-+|+||-+...++
T Consensus 149 ~g~iiaNE~fDAlP 162 (365)
T d1zkda1 149 PAVILANEYFDVLP 162 (365)
T ss_dssp SEEEEEESSGGGSC
T ss_pred CeEEEecccCcccc
Confidence 46888876655443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=88.71 E-value=0.54 Score=41.09 Aligned_cols=74 Identities=22% Similarity=0.283 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEccccccc---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVE--------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~--------- 126 (414)
.+++|++|--|++.|+ ++..+++.|+ +|+.++.+ + ..+.+++..+.. ..++..+.+|+.+.+
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEF---GVKTKAYQCDVSNTDIVTKTIQQI 81 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHH---TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHH
Confidence 4689999999988874 4666777788 69999998 4 445555554443 356889999997752
Q ss_pred --CCCceeEEEEcC
Q 015038 127 --LPEKADILISEP 138 (414)
Q Consensus 127 --~~~~fDvIis~~ 138 (414)
.-++.|++|.+.
T Consensus 82 ~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 82 DADLGPISGLIANA 95 (260)
T ss_dssp HHHSCSEEEEEECC
T ss_pred HHHhCCCcEecccc
Confidence 115799999864
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.63 E-value=0.57 Score=38.26 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=56.3
Q ss_pred HHHHhcCCCCCCEEEEECC-C-ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc----
Q 015038 54 AVIENRADFIGRVVVDVGA-G-SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---- 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGc-G-tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---- 125 (414)
++.+.....++.+||-.|+ | .|.++..+|+. |+ +|+++..+ +-.+.+++ .+ . + .++..+-.++
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~----~G-a-~--~vi~~~~~~~~~~v 86 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LG-V-E--YVGDSRSVDFADEI 86 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TC-C-S--EEEETTCSTHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccccc----cc-c-c--ccccCCccCHHHHH
Confidence 3444555667889999874 3 36777777776 66 57777666 44454443 33 2 1 2333222222
Q ss_pred ---cCCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEc
Q 015038 126 ---ELPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 126 ---~~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 168 (414)
..+..+|+|+... + + ..++.+.+.|+++|+++.
T Consensus 87 ~~~t~~~g~d~v~d~~-g----~-----~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 87 LELTDGYGVDVVLNSL-A----G-----EAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp HHHTTTCCEEEEEECC-C----T-----HHHHHHHHTEEEEEEEEE
T ss_pred HHHhCCCCEEEEEecc-c----c-----hHHHHHHHHhcCCCEEEE
Confidence 1235799999632 1 2 123445689999999875
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.44 E-value=0.56 Score=40.91 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHH-HHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMA-EYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
++++++|--|++.|+ .+..+++.|+ +|+.+|.+ +.+ +.+++..... ..++..+.+|+.+...
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLEAVK 78 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 578999999998874 4667778898 69999998 444 4444444443 3568889999876421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 79 ~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 79 EKFGKLDTVVNAA 91 (251)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 15799999764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.04 E-value=0.41 Score=38.95 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHHhcCCCCCCEEEEECCCcc-HHHHHHH-HcCCCeEEEEeChH-HHHHHHH
Q 015038 53 AAVIENRADFIGRVVVDVGAGSG-ILSLFAA-QAGAKHVYAVEASE-MAEYARK 103 (414)
Q Consensus 53 ~ai~~~~~~~~~~~VLDiGcGtG-~ls~~~a-~~g~~~V~gvD~s~-~~~~a~~ 103 (414)
.++.+.....++.+||-+|||.+ .++..++ ..++.+|+++|.++ -++.|++
T Consensus 18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 34445556678999999999984 4444333 44888999999985 5666665
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.86 E-value=0.71 Score=40.88 Aligned_cols=74 Identities=19% Similarity=0.420 Sum_probs=52.3
Q ss_pred CCCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEeCh-HHH-HHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVEAS-EMA-EYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD~s-~~~-~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
.++||++|--|++.| ..+..+++.|+ +|+.+|.+ +.+ +.+++..... ..++.++.+|+.+...
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~---g~~~~~~~~D~~~~~~v~~~~~~~ 97 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQT---GNKVHAIQCDVRDPDMVQNTVSEL 97 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH---SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhc---CCceEEEEecccChHHHHHHhhhh
Confidence 468899999999887 34566667787 69999998 444 4444444443 3568899999876521
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
.+..|+++.+.
T Consensus 98 ~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 98 IKVAGHPNIVINNA 111 (294)
T ss_dssp HHHTCSCSEEEECC
T ss_pred hhhccccchhhhhh
Confidence 25799999764
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.01 E-value=0.86 Score=42.63 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=43.0
Q ss_pred CCCCEEEEECCCccHHHHHHHHc---CCCeEEEEeChH-HHHHHHHHHHhCCC--CCCcEEEEEc
Q 015038 62 FIGRVVVDVGAGSGILSLFAAQA---GAKHVYAVEASE-MAEYARKLIAGNPS--LGERITVIKG 120 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~ls~~~a~~---g~~~V~gvD~s~-~~~~a~~~~~~n~~--l~~~i~vi~~ 120 (414)
.++.+++||||-.|..+..+++. ...+|+++|+++ ..+..++++..|.. ...++.++..
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~ 275 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 275 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEE
Confidence 45679999999999888766653 235899999995 77888888887641 1235666554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.89 E-value=0.9 Score=39.76 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
+++|++|--|+++|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+.. ..++.++.+|+.+.+.
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS----PDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC----CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999998874 3556667788 59999998 455555554433 2458889999876421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-+++|++|.+.
T Consensus 79 ~~g~iD~lVnnA 90 (268)
T d2bgka1 79 KHGKLDIMFGNV 90 (268)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCcceecccc
Confidence 15799999754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.75 E-value=1.2 Score=35.99 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=55.9
Q ss_pred CEEEEECCCcc--HHHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCC-CCCCcEE----EEEcccccccCCCceeEEEE
Q 015038 65 RVVVDVGAGSG--ILSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNP-SLGERIT----VIKGKVEEVELPEKADILIS 136 (414)
Q Consensus 65 ~~VLDiGcGtG--~ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~-~l~~~i~----vi~~d~~~~~~~~~fDvIis 136 (414)
++|--||+|.- .++..++++|. .|+.+|.++ .++..++.-.... ....... ....|..+. -..+|+|+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA--VKDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH--HTTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH--hcCCCEEEE
Confidence 67888999973 45666777887 699999984 5554443211000 0000011 111111111 146899996
Q ss_pred cCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 137 EPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 137 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
... ....+.++..+..+|+++..++..
T Consensus 79 ~v~------~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 79 VVP------AIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp CSC------GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEc------hhHHHHHHHHhhhccCCCCEEEEe
Confidence 332 334678888899999999877643
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=86.43 E-value=0.48 Score=39.29 Aligned_cols=101 Identities=12% Similarity=0.008 Sum_probs=51.9
Q ss_pred HHHHhcCCCCCCEEEEECCCc---cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEc---ccccc
Q 015038 54 AVIENRADFIGRVVVDVGAGS---GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKG---KVEEV 125 (414)
Q Consensus 54 ai~~~~~~~~~~~VLDiGcGt---G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~---d~~~~ 125 (414)
++.+.....++..||-+.+|+ |..++.+|++ |+ +|+++=-+ +..+...+.+++.+ .. .++.- +..++
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lG-ad---~vi~~~~~~~~~~ 93 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELG-AT---QVITEDQNNSREF 93 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHT-CS---EEEEHHHHHCGGG
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhcc-cc---EEEeccccchhHH
Confidence 344444556777788874443 5666667776 77 57766322 33333333333333 11 22222 22221
Q ss_pred c---------CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 126 E---------LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 126 ~---------~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
. ....+|+|+-. + ... .+....+.|+|+|+++..
T Consensus 94 ~~~v~~~~~~~g~~vdvv~D~-v-----g~~----~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 94 GPTIKEWIKQSGGEAKLALNC-V-----GGK----SSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHHHHTCCEEEEEES-S-----CHH----HHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHhhccCCceEEEEC-C-----Ccc----hhhhhhhhhcCCcEEEEE
Confidence 1 12468999842 2 111 224445889999998753
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.24 E-value=1.6 Score=37.87 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=51.7
Q ss_pred CCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------C
Q 015038 64 GRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----------P 128 (414)
Q Consensus 64 ~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----------~ 128 (414)
+|++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+.+|+.+... -
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 6788999988874 4566777788 59999998 56666655566543 578999999977521 1
Q ss_pred CceeEEEEcC
Q 015038 129 EKADILISEP 138 (414)
Q Consensus 129 ~~fDvIis~~ 138 (414)
++.|++|.+.
T Consensus 78 g~iDilVnnA 87 (257)
T d2rhca1 78 GPVDVLVNNA 87 (257)
T ss_dssp CSCSEEEECC
T ss_pred CCCCEEEecc
Confidence 5799999763
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.12 E-value=1.1 Score=38.99 Aligned_cols=73 Identities=23% Similarity=0.310 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+ .++..+.+|+.+...
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g---~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 589999999988874 3455666688 69999998 56666666566543 578899999987421
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 85 ~~g~iDilvnnA 96 (255)
T d1fmca_ 85 KLGKVDILVNNA 96 (255)
T ss_dssp HHSSCCEEEECC
T ss_pred HcCCCCEeeeCC
Confidence 15799999763
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.09 E-value=0.99 Score=39.48 Aligned_cols=74 Identities=27% Similarity=0.284 Sum_probs=53.8
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC--------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------- 127 (414)
+++++++|--|++.|+ ++..+++.|+ +|+.++.+ + .++.+.+.++..+ .++..+.+|+.+...
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dvt~~~~v~~~~~~~ 79 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG---GEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence 3588999999998874 4566777788 69999986 4 5666666666543 578899999977521
Q ss_pred ---CCceeEEEEcC
Q 015038 128 ---PEKADILISEP 138 (414)
Q Consensus 128 ---~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 80 ~~~~G~iDiLVnnA 93 (261)
T d1geea_ 80 IKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHhCCCCEeeccc
Confidence 15789999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.07 E-value=1.7 Score=37.54 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred CEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------CC
Q 015038 65 RVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-----------PE 129 (414)
Q Consensus 65 ~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----------~~ 129 (414)
|++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++..+.+|+.+.+. -+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 77 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSDRDQVFAAVEQARKTLG 77 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 456888988773 4566677788 69999998 46666666566543 578899999987521 15
Q ss_pred ceeEEEEcC
Q 015038 130 KADILISEP 138 (414)
Q Consensus 130 ~fDvIis~~ 138 (414)
+.|++|.+.
T Consensus 78 ~iDilVnnA 86 (255)
T d1gega_ 78 GFDVIVNNA 86 (255)
T ss_dssp CCCEEEECC
T ss_pred CccEEEecc
Confidence 799999763
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.97 E-value=0.29 Score=42.74 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred EEEEcccccc--cCC-CceeEEEEcCCccccC--------ChhhHHHHHHHHHhccCCCeEEEcccce
Q 015038 116 TVIKGKVEEV--ELP-EKADILISEPMGTLLV--------NERMLETYVIARDRFLVPMGKMFPSVGR 172 (414)
Q Consensus 116 ~vi~~d~~~~--~~~-~~fDvIis~~~~~~l~--------~e~~l~~~l~~~~r~LkpgG~lip~~~~ 172 (414)
.++.+|..++ .++ +++|+|+.+|+..... ....+...+.++.|+|||+|.++.....
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 4677888775 344 7899999999843211 1233567788999999999999875443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=84.39 E-value=0.87 Score=37.12 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHhcCCCCCCEEEEECCC--ccHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccc--c--c
Q 015038 55 VIENRADFIGRVVVDVGAG--SGILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEE--V--E 126 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcG--tG~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~--~--~ 126 (414)
+.+.-...++..||--|++ .|.++..+|++ |+ +|+++--+ +..+.+++. + . + ..+...+... . .
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----G-a-d-~vi~~~~~~~~~~~~~ 86 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----G-A-S-EVISREDVYDGTLKAL 86 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----T-C-S-EEEEHHHHCSSCCCSS
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----c-c-c-ceEeccchhchhhhcc
Confidence 3333333455668877753 36778888876 77 59999887 466666554 1 1 1 2222122111 1 1
Q ss_pred CCCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEcc
Q 015038 127 LPEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPS 169 (414)
Q Consensus 127 ~~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 169 (414)
.++.+|+|+-.. . ...+....+.|+|+|+++..
T Consensus 87 ~~~gvd~vid~v------g----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 87 SKQQWQGAVDPV------G----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCCCEEEEEESC------C----THHHHHHHTTEEEEEEEEEC
T ss_pred cCCCceEEEecC------c----HHHHHHHHHHhccCceEEEe
Confidence 235799988432 1 12334566899999998754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=1.4 Score=38.23 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 63 IGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 63 ~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
+||++|--|+++|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+.... ...++.++.+|+.+...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhc-CCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 58899999998874 4566667788 69999998 45555555444332 24578999999987521
Q ss_pred CCceeEEEEcCC
Q 015038 128 PEKADILISEPM 139 (414)
Q Consensus 128 ~~~fDvIis~~~ 139 (414)
-++.|++|.+.-
T Consensus 80 ~G~iDilVnnAg 91 (254)
T d2gdza1 80 FGRLDILVNNAG 91 (254)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcCeeccccc
Confidence 157999998653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.39 E-value=3.7 Score=31.26 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=40.7
Q ss_pred CEEEEECCCc-cH-HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 015038 65 RVVVDVGAGS-GI-LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL-----PEKADILIS 136 (414)
Q Consensus 65 ~~VLDiGcGt-G~-ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-----~~~fDvIis 136 (414)
++|+-+|+|. |. ++..+.+.|. .|+.+|.++ .++.++.. . .+.++.||..+... -+..|.+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I-----DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C-----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h-----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 3677888764 32 2334444566 699999995 55554432 1 26789999887532 257899887
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.29 E-value=2 Score=35.18 Aligned_cols=99 Identities=17% Similarity=0.045 Sum_probs=55.7
Q ss_pred HHHhcCCCCCCEEEEECCCc--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccc---cC
Q 015038 55 VIENRADFIGRVVVDVGAGS--GILSLFAAQA-GAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEV---EL 127 (414)
Q Consensus 55 i~~~~~~~~~~~VLDiGcGt--G~ls~~~a~~-g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~---~~ 127 (414)
+.......++.+||--|++. |.+++.+++. |+ +|+++--+ +..+.+++. + ...-+. ...+..+. ..
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----G-a~~vi~-~~~~~~~~~~~~~ 95 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----G-AKEVLA-REDVMAERIRPLD 95 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----T-CSEEEE-CC---------CC
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----c-cceeee-cchhHHHHHHHhh
Confidence 33334445678899998654 5777777776 66 59998877 466666543 1 111111 11111111 12
Q ss_pred CCceeEEEEcCCccccCChhhHHHHHHHHHhccCCCeEEEccc
Q 015038 128 PEKADILISEPMGTLLVNERMLETYVIARDRFLVPMGKMFPSV 170 (414)
Q Consensus 128 ~~~fDvIis~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 170 (414)
++.+|+|+-..-+. .+....+.|+|||+++..-
T Consensus 96 ~~gvD~vid~vgg~----------~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 96 KQRWAAAVDPVGGR----------TLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp SCCEEEEEECSTTT----------THHHHHHTEEEEEEEEECS
T ss_pred ccCcCEEEEcCCch----------hHHHHHHHhCCCceEEEee
Confidence 36899888532211 1234458999999997544
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.20 E-value=1.9 Score=37.09 Aligned_cols=71 Identities=23% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE---------- 126 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~---------- 126 (414)
+++++++|--|+++|+ ++..+++.|+ +|+.++.+ +.++...+.+. .++..+..|+.+..
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG------ANGKGLMLNVTDPASIESVLEKIR 73 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC------CCCcEEEEEecCHHHhhhhhhhhh
Confidence 3578999999998874 4566777788 69999998 45554444332 35778888987642
Q ss_pred -CCCceeEEEEcC
Q 015038 127 -LPEKADILISEP 138 (414)
Q Consensus 127 -~~~~fDvIis~~ 138 (414)
.-++.|++|.+.
T Consensus 74 ~~~g~iDilVnnA 86 (243)
T d1q7ba_ 74 AEFGEVDILVNNA 86 (243)
T ss_dssp HHTCSCSEEEECC
T ss_pred cccCCcceehhhh
Confidence 115799999764
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=82.96 E-value=1.5 Score=37.86 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=50.6
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChHHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.++. +.+...++. ...++..+.+|+.+...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~-~~~~~~~~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA-PEAEAAIRN---LGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch-HHHHHHHHH---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3689999999988873 4666777788 6999998731 122333343 33578999999977521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 77 ~~G~iDilVnnA 88 (247)
T d2ew8a1 77 TFGRCDILVNNA 88 (247)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 15799999764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.67 E-value=0.64 Score=41.16 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=43.5
Q ss_pred cEEEEEcccccc--cCC-CceeEEEEcCCcccc-----CC------hhhHHHHHHHHHhccCCCeEEEcccceeE
Q 015038 114 RITVIKGKVEEV--ELP-EKADILISEPMGTLL-----VN------ERMLETYVIARDRFLVPMGKMFPSVGRIH 174 (414)
Q Consensus 114 ~i~vi~~d~~~~--~~~-~~fDvIis~~~~~~l-----~~------e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 174 (414)
.=++++||..++ .++ +++|+|+.+|+.... .+ ...+...+..+.++|+|+|.+++.....+
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~~~ 86 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAY 86 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccchh
Confidence 348999998764 233 789999999884321 11 12256678999999999999988765544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=82.59 E-value=0.94 Score=39.44 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-E-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.+++++|--|+++|+ .+..+++.|+ +|+.++.+ . .++.+.+.+... ...++.++.+|+.+.+.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQ--HGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHH--HTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 478999999998874 5666777888 69999986 3 555555444332 23578899999987521
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 79 ~~~G~iDiLVnnA 91 (260)
T d1x1ta1 79 RQMGRIDILVNNA 91 (260)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHhCCCcEEEeec
Confidence 15799999764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=82.20 E-value=1.6 Score=37.81 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC----------
Q 015038 62 FIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL---------- 127 (414)
Q Consensus 62 ~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~---------- 127 (414)
++++++|--|++.|+ .+..+++.|+ +|+.++.+ +.++.+.+.+.. ..++.++.+|+.+...
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT----PDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 689999999988873 4566777788 59999998 466555555432 3579999999987521
Q ss_pred -CCceeEEEEcC
Q 015038 128 -PEKADILISEP 138 (414)
Q Consensus 128 -~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 79 ~~G~iDiLVnnA 90 (251)
T d1zk4a1 79 AFGPVSTLVNNA 90 (251)
T ss_dssp HHSSCCEEEECC
T ss_pred HhCCceEEEecc
Confidence 15799999764
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.15 E-value=4.6 Score=32.51 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcc-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccCC
Q 015038 51 YYAAVIENRADFIGRVVVDVGAGSG-ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVELP 128 (414)
Q Consensus 51 ~~~ai~~~~~~~~~~~VLDiGcGtG-~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~~ 128 (414)
|...+.+.-...++++||-+|||-- .....++..+.++|+.+..+ +-++...+.+... .++..+..+... .
T Consensus 5 f~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~----~~~~~~~~~~~~---~ 77 (171)
T d1p77a1 5 LVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY----GNIQAVSMDSIP---L 77 (171)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG----SCEEEEEGGGCC---C
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc----cccchhhhcccc---c
Confidence 3344544444568899999999863 32223333366789999988 4554444444432 235555444322 2
Q ss_pred CceeEEEEcCC
Q 015038 129 EKADILISEPM 139 (414)
Q Consensus 129 ~~fDvIis~~~ 139 (414)
..+|+||...+
T Consensus 78 ~~~diiIN~tp 88 (171)
T d1p77a1 78 QTYDLVINATS 88 (171)
T ss_dssp SCCSEEEECCC
T ss_pred cccceeeeccc
Confidence 57999997544
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.01 E-value=1.6 Score=37.87 Aligned_cols=70 Identities=23% Similarity=0.314 Sum_probs=49.3
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.++||++|--|+++|+ ++..+++.|+ +|+.+|.++ .++...+ + + .++.++.+|+.+...
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~---~---~-~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ---E---L-PGAVFILCDVTQEDDVKTLVSETI 74 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---H---C-TTEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---h---c-CCCeEEEccCCCHHHHHHHHHHHH
Confidence 4689999999998873 4666777788 699999984 4443332 2 1 247888899877421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 75 ~~~g~iDilVnnA 87 (250)
T d1ydea1 75 RRFGRLDCVVNNA 87 (250)
T ss_dssp HHHSCCCEEEECC
T ss_pred HhcCCCCEEEecc
Confidence 15799999764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.81 E-value=4.1 Score=35.22 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=62.8
Q ss_pred CCEE-EEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-----------
Q 015038 64 GRVV-VDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL----------- 127 (414)
Q Consensus 64 ~~~V-LDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~----------- 127 (414)
|++| |-=|+++|+ ++..+++.+..+|+.++.+ +-++.+.+.++..+ .++.++.+|+.+...
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 5556 555777764 3445566544479999998 56666666666543 468899999987531
Q ss_pred CCceeEEEEcCCccc---cCC--hhhH-----------HHHHHHHHhccCCCeEEEc
Q 015038 128 PEKADILISEPMGTL---LVN--ERML-----------ETYVIARDRFLVPMGKMFP 168 (414)
Q Consensus 128 ~~~fDvIis~~~~~~---l~~--e~~l-----------~~~l~~~~r~LkpgG~lip 168 (414)
-++.|++|.|.=... ... ...+ -.+.+.+...|+++|.++.
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 157999998742111 000 1111 1345666778888888754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.66 E-value=2.4 Score=36.35 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEcccccccC-------CC
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVEL-------PE 129 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~-------~~ 129 (414)
+++|+++|--|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+ +. ..+..+..|+.+... -+
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~---~~----~~~~~~~~Dv~~~~~v~~~~~~~g 73 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAK---EC----PGIEPVCVDLGDWDATEKALGGIG 73 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HS----TTCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---hc----CCCeEEEEeCCCHHHHHHHHHHcC
Confidence 3689999999998874 4666777788 69999998 34433222 21 236778888876521 15
Q ss_pred ceeEEEEcC
Q 015038 130 KADILISEP 138 (414)
Q Consensus 130 ~fDvIis~~ 138 (414)
+.|++|.+.
T Consensus 74 ~iDilVnnA 82 (242)
T d1cyda_ 74 PVDLLVNNA 82 (242)
T ss_dssp CCSEEEECC
T ss_pred CCeEEEECC
Confidence 799999763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.98 E-value=2.6 Score=36.07 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCcc---HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHhCCCCCCcEEEEEccccccc-------CCCc
Q 015038 62 FIGRVVVDVGAGSG---ILSLFAAQAGAKHVYAVEAS-EMAEYARKLIAGNPSLGERITVIKGKVEEVE-------LPEK 130 (414)
Q Consensus 62 ~~~~~VLDiGcGtG---~ls~~~a~~g~~~V~gvD~s-~~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~-------~~~~ 130 (414)
.+|+++|-.|+++| .++..+++.|+ +|+.+|.+ +.++.+.+ +. ..+..+..|+.+.+ .-++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~---~~----~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVR---EC----PGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---HS----TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHH---hc----CCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 58999999999987 34666777788 69999998 44433332 22 13677888887642 1157
Q ss_pred eeEEEEcC
Q 015038 131 ADILISEP 138 (414)
Q Consensus 131 fDvIis~~ 138 (414)
.|++|.+.
T Consensus 77 iDilVnnA 84 (244)
T d1pr9a_ 77 VDLLVNNA 84 (244)
T ss_dssp CCEEEECC
T ss_pred ceEEEecc
Confidence 99999764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=80.93 E-value=1.8 Score=37.53 Aligned_cols=71 Identities=23% Similarity=0.242 Sum_probs=50.7
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
+++++++|--|++.|+ ++..+++.|+ +|+.+|.++ .++.+ .++ +..++.++.+|+.+...
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~---~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 74 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAAT---ARE---LGDAARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHT---TGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHH---hCCceEEEEcccCCHHHHHHHHHHHH
Confidence 4689999999999883 4666777788 599999984 33322 222 44678999999976421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 75 ~~~g~iDilVnnA 87 (254)
T d1hdca_ 75 EEFGSVDGLVNNA 87 (254)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCccEEEecC
Confidence 15799999764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.37 E-value=2.3 Score=36.57 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred CCCCCEEEEECCCccH---HHHHHHHcCCCeEEEEeChH-HHHHHHHHHHhCCCCCCcEEEEEcccccccC---------
Q 015038 61 DFIGRVVVDVGAGSGI---LSLFAAQAGAKHVYAVEASE-MAEYARKLIAGNPSLGERITVIKGKVEEVEL--------- 127 (414)
Q Consensus 61 ~~~~~~VLDiGcGtG~---ls~~~a~~g~~~V~gvD~s~-~~~~a~~~~~~n~~l~~~i~vi~~d~~~~~~--------- 127 (414)
.++++++|--|++.|+ ++..+++.|+ +|+.+|.++ .++.+.+. +.+++.++.+|+.+...
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~v~~~~~~~~ 75 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAE------LADAARYVHLDVTQPAQWKAAVDTAV 75 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH------TGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH------hhCcceEEEeecCCHHHHHHHHHHHH
Confidence 4689999999999884 5666777788 699999984 44433332 33568889999877421
Q ss_pred --CCceeEEEEcC
Q 015038 128 --PEKADILISEP 138 (414)
Q Consensus 128 --~~~fDvIis~~ 138 (414)
-++.|++|.+.
T Consensus 76 ~~~g~idilinnA 88 (244)
T d1nffa_ 76 TAFGGLHVLVNNA 88 (244)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCeEEEECC
Confidence 15789999764
|