Citrus Sinensis ID: 015056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHHHHccEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHcccccEHHHHHHHHHHHHHHHHHEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEccHcHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHcHccccEEEEEHHHcccccHHHHHHHHccccEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MVKAPSLISLAALAVKRELllgddvipyvyelPADLFDILLTclpplalqklqtkmpfrdgddcgspdycfengrkrgrygnfNTVWKKLFKTRwsgftdqiepvdWQQRYWEAHVQGCLDEAAElvvlpsfrglisdinisdTILNYIGYEQQMNHLacdysklsyhcqqfgHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHcklspsfvEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSslsildlsgnsiggwlskydrsgplfslgagkslqSLRLLNLSHIAASLGKFFGTSVQVLNIGAiglgssgfrvlqdgvtkeLKLVNINIRFKPIS
Flexible Loop (DISEMBL)
mvkapsliSLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFengrkrgrygnfNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDgvtkelklvninirfkpis
Low Complexity Region (SEG)
MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPssvvvelvsflssGRSLCSLKLRHCHLDRDFGRMVFsslleassslsildlsgnsIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS
Disordered region (IsUnstruct)
******LISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF****
Disordered Region (DISOPRED)
***APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI*
Disordered Region (DISEMBL)
MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS
Disordered Region (DISPRO)
*VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGD****PD**F***RKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
255560275	598	protein binding protein, putative [Ricin	0.830	0.575	0.560	1e-100
297744269	580	unnamed protein product [Vitis vinifera]	0.867	0.618	0.509	5e-98
449443929	604	PREDICTED: uncharacterized protein LOC10	0.867	0.594	0.528	3e-91
449475557	604	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.867	0.594	0.528	5e-91
356503658	604	PREDICTED: uncharacterized protein LOC10	0.852	0.584	0.516	1e-90
359480084	834	PREDICTED: uncharacterized protein LOC10	0.789	0.392	0.508	7e-89
356570694	625	PREDICTED: uncharacterized protein LOC10	0.852	0.564	0.477	9e-86
42569177	604	leucine-rich repeats-ribonuclease inhibi	0.968	0.663	0.477	3e-83
297832112	603	leucine-rich repeat family protein [Arab	0.961	0.660	0.489	2e-80
357154921	653	PREDICTED: uncharacterized protein LOC10	0.787	0.499	0.416	2e-59

>gi|255560275|ref|XP_002521155.1| protein binding protein, putative [Ricinus communis] gi|223539724|gb|EEF41306.1| protein binding protein, putative [Ricinus communis]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/357 (56%), Positives = 246/357 (68%), Gaps = 13/357 (3%)

Query: 14  AVKRELLLGDDVI--PYVYELPADLFDILLTCLPPLALQKLQTKMPFRD--GDDCGSP-D 68
           A+KR+L+ GDDV+    +YE+P+ LF IL+T LPPLAL  LQ +MP+ +  G +C    D
Sbjct: 3   AIKRQLISGDDVLMLAEIYEIPSHLFSILVTKLPPLALHNLQMEMPYENSNGYECSDGGD 62

Query: 69  YCFENGRKRGRYGNFNTVWKKLFKTRWSGF--TDQIEPVDWQQRYWEAHVQGCLDEAAEL 126
            C + GRKRGR   FNT WK LFK RW     TD +E  +W Q YWE H+Q CLDEAA  
Sbjct: 63  GCSKIGRKRGRSCKFNTEWKTLFKLRWPQIVDTDSVESDNWHQAYWEKHLQNCLDEAAGS 122

Query: 127 VVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALC 186
            ++ SF G I +I + D IL +IG E  +NH    YSKLSYH QQ GHYARCLRLQN LC
Sbjct: 123 SMV-SFDGCIGEIKVPDYILKWIGCEGHLNHSI--YSKLSYHFQQLGHYARCLRLQNVLC 179

Query: 187 VEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGIC 246
           V ETCQLLR S+LQ+L LRWIR +EHV  LC+LLIQN ETL SLEF+HCKLS +FV+ IC
Sbjct: 180 VAETCQLLRNSQLQNLALRWIRSQEHVDGLCQLLIQNRETLTSLEFVHCKLSSTFVDAIC 239

Query: 247 RSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306
           RSL  K K+ H I+N SI  S F+E    S+   LVSFLSSGRSLCSL+    HLDR F 
Sbjct: 240 RSLEIKDKQTHGIKNFSIRTSIFLETDLVSLPPSLVSFLSSGRSLCSLRFSGNHLDRKFA 299

Query: 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLF---SLGAGKSLQSLRLLNL 360
           R++F+ L + SS++S+LDLS N I GWLS ++R        + G  KSLQSLR+LN+
Sbjct: 300 RILFTLLFDDSSNISVLDLSDNIIAGWLSNFNRGSSSMVPSTFGITKSLQSLRILNV 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744269|emb|CBI37239.3| unnamed protein product [Vitis vinifera]

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 193/379 (50%), Positives = 253/379 (66%), Gaps = 20/379 (5%)

Query: 1   MVKAPSLISLAALAVKRELL---LGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMP 57
           M + PSL+SL    + +++L    G+D+   +YELP+ LFD LL  LPPL LQKLQ +MP
Sbjct: 1   MAEVPSLMSLCMKKLGKDILRDDFGNDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMP 60

Query: 58  FRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDW---------- 107
            R  +   S + CF NGRKRG  GNFNT WK LFK+RW     +I+ VDW          
Sbjct: 61  LRCWNGHESTNICFRNGRKRGSCGNFNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESI 120

Query: 108 ---QQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSK 164
              QQ YWE H+Q C+DEAAE+ VLPSF G + +I I DTI+  I Y+   +H   DYSK
Sbjct: 121 IDWQQMYWETHLQNCIDEAAEIAVLPSFDGGLGEIEIPDTIIKCIVYKGHRSHSTRDYSK 180

Query: 165 LSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNS 224
           LSYHC+QFG YARCL+LQN LC+ ET  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+
Sbjct: 181 LSYHCEQFGSYARCLKLQNMLCIAETSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNN 240

Query: 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSF 284
           ETL+SLEF+ C LS + +  IC SL  K  + +++++ SI  S+ +E  P S+   LVSF
Sbjct: 241 ETLSSLEFIFCNLSSASLNAICDSLRVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSF 299

Query: 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SG 341
           LSSGRSLCSLK     L ++F ++VF++LL+ASS LS L+   N+I GWL  +++   + 
Sbjct: 300 LSSGRSLCSLKFSDNRLGKNFAKLVFNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTW 359

Query: 342 PLFSLGAGKSLQSLRLLNL 360
           PL S G GKSLQ LR+LNL
Sbjct: 360 PLPSFGLGKSLQLLRVLNL 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443929|ref|XP_004139728.1| PREDICTED: uncharacterized protein LOC101206924 [Cucumis sativus]

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/363 (52%), Positives = 238/363 (65%), Gaps = 4/363 (1%)

Query: 1   MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
           M +APSL+SL    V+ E+L  DDV P +Y+LP  L D L   LPPLAL+ LQ+ MPF  
Sbjct: 1   MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFEL 60

Query: 61  GDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCL 120
            ++    + C  +GRKR R  NFN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CL
Sbjct: 61  QNEDEYDNNCLMDGRKRRRSSNFNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCL 120

Query: 121 DEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLR 180
           DEAAE+  LPSF   I +I +SD+IL YI  ++ ++     Y  LSYHCQ+FG YA CLR
Sbjct: 121 DEAAEIASLPSFSKCIGEIEMSDSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLR 180

Query: 181 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS 240
           LQ+ LCV E   +LR  +LQ+L+LRWIRF E V  LCKLL QN ETL SLE +HCKLS +
Sbjct: 181 LQSVLCVSEIYHILRSCRLQTLLLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSST 240

Query: 241 FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300
            V  IC +L   RK  H I + SI+ S F E  P ++   LVSF SSGR L S KL    
Sbjct: 241 SVNSICDALIHNRK-THGILHFSINGSRFDETEPVALPSGLVSFFSSGRYLYSFKLCDND 299

Query: 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRL 357
           L ++FG+ VF +LL+ASS LS+LDLS N + GWLS ++R   +G   S   GKSLQSLR+
Sbjct: 300 LGKNFGKFVFHTLLDASSCLSVLDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRV 359

Query: 358 LNL 360
           LNL
Sbjct: 360 LNL 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475557|ref|XP_004154489.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227026 [Cucumis sativus]

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 192/363 (52%), Positives = 238/363 (65%), Gaps = 4/363 (1%)

Query: 1   MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
           M +APSL+SL    V+ E+L  DDV P +Y+LP  L D L   LPPLAL+ LQ+ MPF  
Sbjct: 1   MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMPFEL 60

Query: 61  GDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCL 120
            ++    + C  +GRKR R  NFN  WKK F  RWS  TD I+PVDWQQ YWE H+Q CL
Sbjct: 61  QNEDEYDNNCLMDGRKRRRSSNFNLAWKKNFDLRWSKLTDTIQPVDWQQIYWETHLQSCL 120

Query: 121 DEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLR 180
           DEAAE+  LPSF   I +I +SD+IL YI  ++ ++     Y  LSYHCQ+FG YA CLR
Sbjct: 121 DEAAEIASLPSFSKCIGEIEMSDSILKYIASKESVHFWRAKYRYLSYHCQEFGCYALCLR 180

Query: 181 LQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPS 240
           LQ+ LCV E   +LR  +LQ+L+LRWIRF E V  LCKLL QN ETL SLE +HCKLS +
Sbjct: 181 LQSVLCVSEIYHILRSCRLQTLLLRWIRFPEQVNGLCKLLNQNRETLTSLELIHCKLSST 240

Query: 241 FVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300
            V  IC +L   RK  H I + SI+ S F E  P ++   LVSF SSGR L S KL    
Sbjct: 241 SVNSICDALIHNRK-THGILHFSINGSRFDETEPVALPSGLVSFXSSGRYLYSFKLCDND 299

Query: 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRL 357
           L ++FG+ VF +LL+ASS LS+LDLS N + GWLS ++R   +G   S   GKSLQSLR+
Sbjct: 300 LGKNFGKFVFHTLLDASSCLSVLDLSENKMTGWLSNFNRRSLTGLQASSMVGKSLQSLRV 359

Query: 358 LNL 360
           LNL
Sbjct: 360 LNL 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503658|ref|XP_003520623.1| PREDICTED: uncharacterized protein LOC100794405 [Glycine max]

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/360 (51%), Positives = 232/360 (64%), Gaps = 7/360 (1%)

Query: 5   PSLISLAALAVKRELL--LGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGD 62
           PSL+S+   A+ ++LL    DD++P +Y+LP+ L D L+T LPPLAL+     +PF   D
Sbjct: 6   PSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALRTFHHHLPF---D 62

Query: 63  DCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDE 122
           + G         RKR R  N N+ W++LF+ RW     QI   DW+Q YWE H+Q CLDE
Sbjct: 63  EEGFSHDDSTKKRKRARDWNLNSAWQRLFQLRWPDRVKQIHRTDWEQLYWETHLQDCLDE 122

Query: 123 AAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQ 182
           A E+ ++PSF G I DI ISD+IL YIG+    NH  CD+SKLSYHC QFG +  CL LQ
Sbjct: 123 AVEVALIPSFTGYIGDIQISDSILKYIGFVGNTNHSTCDHSKLSYHCLQFGSHVSCLGLQ 182

Query: 183 NALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV 242
           N LC  ET  LLRE KLQSLVLR IR +E +  LCKLL Q+  TL SLEF+HC LS  F+
Sbjct: 183 NVLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRTLTSLEFVHCALSTDFI 242

Query: 243 EGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302
             I  SL  +R + H I++LSI  +SF+E C  S+   LVSFLSSGRSLCSLKL   H  
Sbjct: 243 NAIFGSLVIERVQKHGIQHLSIIATSFLEPCTVSLPSGLVSFLSSGRSLCSLKLSENHHG 302

Query: 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR--SGPLFSLGAGKSLQSLRLLNL 360
             F + +F +LL  SS +S+LDLS N I GWL  Y R  SG   S G GKSL+ LR+LNL
Sbjct: 303 WTFAKDLFVTLLNLSSGISVLDLSRNRISGWLFYYRRSLSGSHLSFGNGKSLKLLRVLNL 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480084|ref|XP_002267362.2| PREDICTED: uncharacterized protein LOC100261775 [Vitis vinifera]

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 180/354 (50%), Positives = 232/354 (65%), Gaps = 27/354 (7%)

Query: 23  DDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGN 82
           +D+   +YELP+ LFD LL  LPPL LQKLQ +MP R  +   S + CF NGRKRG  GN
Sbjct: 81  NDLSSAIYELPSVLFDGLLMHLPPLTLQKLQEEMPLRCWNGHESTNICFRNGRKRGSCGN 140

Query: 83  FNTVWKKLFKTRWSGFTDQIEPVDW-------------QQRYWEAHVQGCLDEAAELVVL 129
           FNT WK LFK+RW     +I+ VDW             QQ YWE H+Q C+DEAAE+ VL
Sbjct: 141 FNTAWKALFKSRWPDLARKIQRVDWSAGVAKYESIIDWQQMYWETHLQNCIDEAAEIAVL 200

Query: 130 PSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEE 189
           PSF G + +I I              +H   DYSKLSYHC+QFG YARCL+LQN LC+ E
Sbjct: 201 PSFDGGLGEIEIPG----------HRSHSTRDYSKLSYHCEQFGSYARCLKLQNMLCIAE 250

Query: 190 TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSL 249
           T  LLR+S+LQ LVLRWI+  EH+  LC+LL QN+ETL+SLEF+ C LS + +  IC SL
Sbjct: 251 TSHLLRKSRLQQLVLRWIKSSEHMDGLCQLLQQNNETLSSLEFIFCNLSSASLNAICDSL 310

Query: 250 CSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMV 309
             K  + +++++ SI  S+ +E  P S+   LVSFLSSGRSLCSLK     L ++F ++V
Sbjct: 311 RVKDMQTYRVQHFSI-TSTVLERNPLSLPHGLVSFLSSGRSLCSLKFSDNRLGKNFAKLV 369

Query: 310 FSSLLEASSSLSILDLSGNSIGGWLSKYDR---SGPLFSLGAGKSLQSLRLLNL 360
           F++LL+ASS LS L+   N+I GWL  +++   + PL S G GKSLQ LR+LNL
Sbjct: 370 FNTLLDASSRLSTLNFEDNNITGWLFNFNQRSSTWPLPSFGLGKSLQLLRVLNL 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570694|ref|XP_003553520.1| PREDICTED: uncharacterized protein LOC100817679 [Glycine max]

 Score =  323 bits (828), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 182/381 (47%), Positives = 231/381 (60%), Gaps = 28/381 (7%)

Query: 5   PSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTK-MPFRDGDD 63
           PSLISL   A+ ++ L   D +P +Y+LP+ L   L+T LPP AL+      +PF   D+
Sbjct: 6   PSLISLCIDALAQQFLRPSDDLPSIYDLPSHLLHTLITRLPPFALRTFHRHHLPF---DE 62

Query: 64  CGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEA 123
            G         RKR R  N ++ W++LF  RW     QI+P DW+Q YWE H+Q CLDEA
Sbjct: 63  EGFSRDDSTKKRKRARDWNLSSAWQRLFLLRWPDRVKQIQPTDWEQHYWEIHLQDCLDEA 122

Query: 124 AELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQN 183
           AE+ ++PSF G I DI ISD+IL YIG+    +H +CD+SKLSYHC QFG +  CL LQN
Sbjct: 123 AEVALIPSFSGYIGDIQISDSILKYIGFVGNTSHSSCDHSKLSYHCLQFGSHVSCLMLQN 182

Query: 184 ALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE 243
            LC  ET  LLRE KLQSLVLR IR +E +  LCKLL Q+   L SLEF+HC LS  F+ 
Sbjct: 183 VLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRMLTSLEFVHCTLSTDFIN 242

Query: 244 GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSG--------------- 288
            I  SL  +R + H I++LSI  +SF+E C  S+   L+SFLSSG               
Sbjct: 243 AIFGSLVIERVQKHGIQHLSIIATSFLEPCAVSLPSGLMSFLSSGRYMSIIAFLSVEYLP 302

Query: 289 ------RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR--- 339
                 RSLCSLKL      R F + +F +LL  SS +S+LDLS N I GWLS ++R   
Sbjct: 303 YATAATRSLCSLKLSDNQHGRTFAKDLFVTLLNLSSGISVLDLSENRIAGWLSDFNRRFL 362

Query: 340 SGPLFSLGAGKSLQSLRLLNL 360
           SG   S G GKSL+ LR+LNL
Sbjct: 363 SGSHMSFGNGKSLKLLRVLNL 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569177|ref|NP_179611.2| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|330251888|gb|AEC06982.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 205/429 (47%), Positives = 260/429 (60%), Gaps = 28/429 (6%)

Query: 1   MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPF-- 58
           M KAPSL  L   ++K +LL  D+ IP +YELP++L D ++  LP LALQK QT MPF  
Sbjct: 1   MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHC 60

Query: 59  ----RDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWE 113
                 GDDC     C   GRKR R     + WK LFK RW  F D++E P DWQQ YWE
Sbjct: 61  LDSYESGDDC-----CLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWE 115

Query: 114 AHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQF 172
            H+Q C+DEAAE+ + P+F G I  IN+SD IL YI +E+  M    C   +LS+H Q F
Sbjct: 116 KHLQNCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTF 175

Query: 173 GHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEF 232
           G Y RCLRL N LCV ET +LLR SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE 
Sbjct: 176 GPYLRCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLEL 235

Query: 233 LHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC 292
           +HCKLS S +  IC SL  K      ++   I  SS IE  P +     VSFL S R+L 
Sbjct: 236 IHCKLSLSSISAICTSLHEKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLH 294

Query: 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352
           SL     +LDR F RMVFS+LL++SS+LS LDLS N+I GWLS +     + SL +GKSL
Sbjct: 295 SLHFGDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSL 354

Query: 353 QSLRLLNL----------SHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK--E 400
           QSL  LNL           ++A +L    G  ++ L++    +  SG R L    TK  +
Sbjct: 355 QSLCKLNLRGNELDRYDAENLAHALLHMPG--LESLDLSGNPIEDSGIRSLISYFTKNPD 412

Query: 401 LKLVNINIR 409
            +L ++N+ 
Sbjct: 413 SRLADLNLE 421

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832112|ref|XP_002883938.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297329778|gb|EFH60197.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 202/413 (48%), Positives = 252/413 (61%), Gaps = 15/413 (3%)

Query: 1   MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRD 60
           M KAPSL  L   ++K +LL  D+ IP +YELP++L D ++  LP LALQ  QT MPF  
Sbjct: 1   MTKAPSLAFLCIQSLKLQLLDSDNPIPDLYELPSELLDAVIAHLPALALQNFQTNMPFNC 60

Query: 61  GDDCGSPDYCFENGRKRG-RYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQG 118
            DD  S D C  NGRKR  R     + WK LFK RW  F D++E P DWQQ YWE H+Q 
Sbjct: 61  LDDYESGDDCLINGRKRSSRNDPLGSSWKMLFKLRWPDFVDRVESPADWQQLYWEKHLQN 120

Query: 119 CLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARC 178
           C+DEAAE+ + P+F G I  IN+SD IL YI +E+ M+   C   +LS+H Q FG Y RC
Sbjct: 121 CVDEAAEVALRPTFSGRIRSINVSDNILRYICHEEHMSCQKCVCKELSFHFQTFGPYLRC 180

Query: 179 LRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS 238
           LRL N LCV ET +LL  SKLQSLVLRWIR E+HV+ LCKLLIQ  +TL SLEF+HCKLS
Sbjct: 181 LRLLNVLCVTETSELLMTSKLQSLVLRWIRSEKHVEPLCKLLIQTRDTLTSLEFIHCKLS 240

Query: 239 PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298
            S +  IC SL  K      ++   I  SS IE  P +     VSFL S R+L SL    
Sbjct: 241 SSSISAICASLHEKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHFCD 299

Query: 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358
            +LDR   RMVFS+LL++SS+LS LDLS N+I GWLS +     + SL +GK LQSL  L
Sbjct: 300 SNLDRHIARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCRSVVGSLSSGKFLQSLCKL 359

Query: 359 NL----------SHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKEL 401
           NL           ++A +L    G  ++ L++    +  SG R L    TK L
Sbjct: 360 NLRGNELDRYDAENLAHALLHMPG--LESLDLSGNPIEDSGIRSLISYFTKNL 410

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357154921|ref|XP_003576947.1| PREDICTED: uncharacterized protein LOC100822893 [Brachypodium distachyon]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/341 (41%), Positives = 192/341 (56%), Gaps = 15/341 (4%)

Query: 32  LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC------GSPDYCFENGRKRGRYGNFNT 85
           LP +L   L   L P AL+ L      R           G  D     G KR R  +FNT
Sbjct: 75  LPWELLHQLAPRLSPFALESLHDAAHARCCSSASTTVRFGGLDGGNRRGIKRSRCEDFNT 134

Query: 86  VWKKLFKTRW--SGFTDQIE--PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINI 141
            W+ LFK RW     T Q     VDWQQ+YWE H+Q CLDEAAE  +LPSFRG I ++ I
Sbjct: 135 TWQALFKCRWPLDDCTGQANFVTVDWQQQYWEKHLQECLDEAAEAALLPSFRGSIDELII 194

Query: 142 SDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS 201
           S  I++ +     ++     YS+LSYHC + G+Y R LRLQN LC  E C +L+ S+L++
Sbjct: 195 SAKIMSSVYLSADISQ---QYSRLSYHCTRLGYYVRRLRLQNVLCTVEICSMLQHSRLET 251

Query: 202 LVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIEN 261
           LV   I  E  V  +C LL  +++TL SLEF+HC+L P  ++ IC SLC +  + H+I+ 
Sbjct: 252 LVFIRIISEAEVNGVCLLLSCHAKTLVSLEFIHCQLYPVVMDKICSSLCQQGSQNHEIQR 311

Query: 262 LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS 321
           LSI  S   E+ PS++   L++FLS  +SL  L L    +   F +++  +LL++S  L 
Sbjct: 312 LSIKSSRVCESNPSTISAGLLNFLSHAKSLQLLSLNDAKMQPSFAKIIIHTLLKSSCGLQ 371

Query: 322 ILDLSGNSIGGWLSKYDRSGPLFS--LGAGKSLQSLRLLNL 360
            LD+S N I GWLS  DRS   FS  L +  SL SL +L L
Sbjct: 372 TLDISENDIAGWLSTVDRSCTSFSSELESNTSLSSLTVLKL 412

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2039027	604	AT2G20210 "AT2G20210" [Arabido	0.864	0.592	0.480	2.5e-83

TAIR|locus:2039027 AT2G20210 "AT2G20210" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
 Identities = 175/364 (48%), Positives = 212/364 (58%)

Query:     1 MVKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFR- 59
             M KAPSL  L   ++K +LL  D+ IP +YELP++L D ++  LP LALQK QT MPF  
Sbjct:     1 MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNMPFHC 60

Query:    60 -DGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIE-PVDWQQRYWEAHVQ 117
              D  + G  D C   GRKR R     + WK LFK RW  F D++E P DWQQ YWE H+Q
Sbjct:    61 LDSYESGD-DCCLITGRKRARNDVLGSSWKLLFKLRWPDFVDRVESPADWQQLYWEKHLQ 119

Query:   118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQ-MNHLACDYSKLSYHCQQFGHYA 176
              C+DEAAE+ + P+F G I  IN+SD IL YI +E+  M    C   +LS+H Q FG Y 
Sbjct:   120 NCVDEAAEVALRPTFSGRICSINVSDNILRYICHEEHIMTCQNCVCKELSFHFQTFGPYL 179

Query:   177 RCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK 236
             RCLRL N LCV ET +LLR SKL+SLVLRWIR E+HV+ LCKLLIQ+ ETL SLE +HCK
Sbjct:   180 RCLRLLNVLCVTETSELLRTSKLRSLVLRWIRSEKHVEPLCKLLIQSRETLTSLELIHCK 239

Query:   237 LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPXXXXXXXXXXXXXGRSLCSLKL 296
             LS S +  IC SL  K      ++   I  SS IE  P              R+L SL  
Sbjct:   240 LSLSSISAICTSLHEKGIHTTGMQRFCIKTSS-IEIDPLAAPSAFVSFLMSVRTLHSLHF 298

Query:   297 RHCHLDRDFGRMVFXXXXXXXXXXXXXXXXXXXIGGWLSKYDRSGPLFSLGAGKSLQSLR 356
                +LDR F RMVF                   I GWLS +     + SL +GKSLQSL 
Sbjct:   299 GDSNLDRYFARMVFSTLLDSSSNLSSLDLSENNISGWLSTFSCKSVVGSLSSGKSLQSLC 358

Query:   357 LLNL 360
              LNL
Sbjct:   359 KLNL 362

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG4308	478	consensus LRR-containing protein [Function unknown	99.57
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.38
KOG4308	478	consensus LRR-containing protein [Function unknown	99.32
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.38
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.27
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	98.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.06
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.59
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	97.37
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.34
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.33
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	97.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.13
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.07
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.45
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.04
PLN03210	1153	Resistant to P. syringae 6; Provisional	95.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	95.18
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.84
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.39
PLN03150	623	hypothetical protein; Provisional	94.08
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.85
KOG3926	332	consensus F-box proteins [Amino acid transport and	93.8
KOG4341	483	consensus F-box protein containing LRR [General fu	93.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.21
PLN03150	623	hypothetical protein; Provisional	93.16
PF06881	109	Elongin_A: RNA polymerase II transcription factor	92.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	91.91
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	90.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	89.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	89.01
PRK15386	426	type III secretion protein GogB; Provisional	88.49
KOG2982	418	consensus Uncharacterized conserved protein [Funct	86.35
KOG0472	565	consensus Leucine-rich repeat protein [Function un	86.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	84.44
KOG0617	264	consensus Ras suppressor protein (contains leucine	82.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	82.57
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	80.9

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=5.4e-17  Score=154.26  Aligned_cols=203  Identities=20%  Similarity=0.232  Sum_probs=151.7

Q ss_pred             cccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       196 ~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      ..+|++|.++.+.-.......+..+..+ ++|++|++++|.+++.++..++.++..-.   ..++.+.+..|.+ +   .
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l-~---~  151 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLP---PALEKLVLGRNRL-E---G  151 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCC---CCceEEEcCCCcC-C---c
Confidence            4588888888773322233444556666 58999999999999888888888876642   3488899998887 6   4


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      .....++..+..+++|++|+|++|.+.++++..+..++.+.+ +|+.|+|++|.|++    ...+.++..+..+.   +|
T Consensus       152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~----~~~~~l~~~~~~~~---~L  223 (319)
T cd00116         152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNNGLTD----EGASALAETLASLK---SL  223 (319)
T ss_pred             hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEeccCCccCh----HHHHHHHHHhcccC---CC
Confidence            556678888888889999999999999999998888888875 99999999999986    22333334554444   48


Q ss_pred             ceeehH--HHHhh----ccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          356 RLLNLS--HIAAS----LGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       356 ~~LnLs--~l~~a----gvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|+++  .+.+.    +++.+   ..+|++|++.+|.+++.|+.++++++..+++|+++|+++|+++
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            888885  33332    12211   3688888888888888888888888888888888888888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=3.7e-15  Score=141.72  Aligned_cols=197  Identities=24%  Similarity=0.249  Sum_probs=135.2

Q ss_pred             ccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCC--hhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       199 Lq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~--~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      ++.|.++++ .++.+...++..+..++ +|++|+++++.++  +.++..+..++.. .   .+++++.+..+.+ .   .
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~---~~L~~L~l~~~~~-~---~   95 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTK-G---CGLQELDLSDNAL-G---P   95 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHh-c---CceeEEEccCCCC-C---h
Confidence            777777777 56666677777766664 7888888888887  6777766666654 2   4688888887777 3   2


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      ..+..+..+..+ ++|++|++++|++.++++..+...+...+..|++|+|++|.|++    ..-...+..+..+.+   |
T Consensus        96 ~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~---L  167 (319)
T cd00116          96 DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG----ASCEALAKALRANRD---L  167 (319)
T ss_pred             hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc----hHHHHHHHHHHhCCC---c
Confidence            345555555555 77888888888888888888888887773488888888888885    112222334433333   7


Q ss_pred             ceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          356 RLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       356 ~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|+|+          .++.++.+  .++|+.|+|++|.+++.+.+.++..+..+++|++|++++|.++
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         168 KELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             CEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            777773          23333334  5677777777777777777777777777777777777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.57  E-value=1.8e-16  Score=165.96  Aligned_cols=202  Identities=20%  Similarity=0.178  Sum_probs=183.2

Q ss_pred             ccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCccc
Q 015056          199 LQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV  277 (414)
Q Consensus       199 Lq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~  277 (414)
                      +..|+|..+ ..+.++..+++++..+. +|+.|+|++|.+++.|...||+.+++|.   |-+|.|++..|.. +   .+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~-~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l-~---~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLP-TLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSL-T---SEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccc-cHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccc-c---ccc
Confidence            555666666 66668999999999997 9999999999999999999999999997   9999999999998 6   789


Q ss_pred             HHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhcc---CCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       278 ~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~---~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      +..++++|.++.+++.++++.|.+.+.|...++.+|.+   +.|++++|.|++|.+|+    .+|..++.++....+  .
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~~~--~  234 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASGES--L  234 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhccch--h
Confidence            99999999999999999999999999999999999998   99999999999999998    889988889977764  4


Q ss_pred             cceeehH--HHHhhccccC-------CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          355 LRLLNLS--HIAASLGKFF-------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       355 L~~LnLs--~l~~agvk~L-------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++.|++.  .++|.|+..+       .++++.|+++.|.+++.|+..|++.+..-..+++|.+++|.+.
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            7778885  7777776666       5889999999999999999999999999899999999999874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.38  E-value=7.8e-13  Score=133.51  Aligned_cols=183  Identities=19%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             HHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHH------------
Q 015056          213 VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE------------  280 (414)
Q Consensus       213 ~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~------------  280 (414)
                      ..-+..+|+..+ .|+.|+||.|.+++.||+.+=+-+.+-    ..+|+|-+..|+. .   +.+-.-            
T Consensus        81 L~~l~~aL~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s~----~~L~eL~L~N~Gl-g---~~ag~~l~~al~~l~~~k  151 (382)
T KOG1909|consen   81 LKMLSKALLGCP-KLQKLDLSDNAFGPKGIRGLEELLSSC----TDLEELYLNNCGL-G---PEAGGRLGRALFELAVNK  151 (382)
T ss_pred             HHHHHHHHhcCC-ceeEeeccccccCccchHHHHHHHHhc----cCHHHHhhhcCCC-C---hhHHHHHHHHHHHHHHHh
Confidence            345556777776 777777777777777777666655552    3566666666665 4   333333            


Q ss_pred             -------------------------HHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccc
Q 015056          281 -------------------------LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS  335 (414)
Q Consensus       281 -------------------------Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~  335 (414)
                                               +|.++.+.++|+.+++..|-+..+|+-+|..++.|.+ .|+.|||.+|-+|..+ 
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~eg-  229 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEG-  229 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHH-
Confidence                                     4444444555555555555555555555555555555 5555555555555411 


Q ss_pred             ccCCCChhhhhhcCcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcE
Q 015056          336 KYDRSGPLFSLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVN  405 (414)
Q Consensus       336 ~~~c~~ls~aL~~nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~  405 (414)
                         ..++|.+|..-+   .|+.||++          ++.+|+-+. ..+|+.|++.+|-++.+|+.+|+.++..-+.|..
T Consensus       230 ---s~~LakaL~s~~---~L~El~l~dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k  302 (382)
T KOG1909|consen  230 ---SVALAKALSSWP---HLRELNLGDCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEK  302 (382)
T ss_pred             ---HHHHHHHhcccc---hheeecccccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence               222333443222   25555552          333333332 4455666666666666666666666555555666


Q ss_pred             EecCCCCC
Q 015056          406 INIRFKPI  413 (414)
Q Consensus       406 LdLs~N~i  413 (414)
                      |+|++|++
T Consensus       303 LnLngN~l  310 (382)
T KOG1909|consen  303 LNLNGNRL  310 (382)
T ss_pred             hcCCcccc
Confidence            66666654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.32  E-value=2.8e-13  Score=142.10  Aligned_cols=191  Identities=21%  Similarity=0.199  Sum_probs=165.8

Q ss_pred             chHhHHHHHHHHhhCCCCCcEEEcccCCCChhH---HHHHHhhhcCccccccc---cceeeccccccccCCCcccHHHHH
Q 015056          209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSF---VEGICRSLCSKRKRIHK---IENLSIDISSFIENCPSSVVVELV  282 (414)
Q Consensus       209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~---m~~LC~~L~~p~v~~C~---lq~lsl~tc~~~~~~~~~~~~~La  282 (414)
                      ....+..+-..+..+. +++++.+.++.++..+   +....+.+.++-   +.   +.++++..|.+ .   ...++.++
T Consensus        37 ~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~L~~~~l-~---~~~~~~l~  108 (478)
T KOG4308|consen   37 GADTCRDLRSLLRRNT-TLTELVLQSCSLSGRGRCFVLELLELLREPL---NKLASLLHLSLANNRL-G---DRGAEELA  108 (478)
T ss_pred             CccchHHHHHhhhhcc-chhhhhhhhhhccccccchHHHHHHhhcccc---chhhhHHHhhhhhCcc-c---cchHHHHH
Confidence            3355677778888886 9999999999999999   678888888887   55   78899999998 7   67899999


Q ss_pred             HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056          283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-  361 (414)
Q Consensus       283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-  361 (414)
                      .+|.++.+|..|+|++|.++|+|++.|+.+|+++.|.+++|++..|.+++    ..|..++.+|..+..   |+.||++ 
T Consensus       109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~----~g~~~l~~~L~~~~~---l~~l~l~~  181 (478)
T KOG4308|consen  109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS----EGAAPLAAVLEKNEH---LTELDLSL  181 (478)
T ss_pred             HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc----cchHHHHHHHhcccc---hhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999    667778889988776   8899984 


Q ss_pred             -HHHhhccccC----------CCceeEEEeecccCCchhHHHHHHHHhcCCC-CcEEecCCCCCC
Q 015056          362 -HIAASLGKFF----------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELK-LVNINIRFKPIS  414 (414)
Q Consensus       362 -~l~~agvk~L----------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~-L~~LdLs~N~i~  414 (414)
                       .+++.|...+          .+++++|+|..|++|+.+|..++.++....+ ++++++..|.++
T Consensus       182 n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  182 NGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             cccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence             3333332222          6899999999999999999999999998888 999999999874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=4.3e-11  Score=121.11  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=88.7

Q ss_pred             chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecc---ccccccCCCcccHH---HHH
Q 015056          209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID---ISSFIENCPSSVVV---ELV  282 (414)
Q Consensus       209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~---tc~~~~~~~~~~~~---~La  282 (414)
                      ++...+.+...+..- .+++.++|+||.++...++.+|..|.+.+    .++...|.   +-+. .   .++++   -|.
T Consensus        15 t~ed~~~v~~~~~~~-~s~~~l~lsgnt~G~EAa~~i~~~L~~~~----~L~~v~~sd~ftGR~-~---~Ei~e~L~~l~   85 (382)
T KOG1909|consen   15 TEEDEKDVEEELEPM-DSLTKLDLSGNTFGTEAARAIAKVLASKK----ELREVNLSDMFTGRL-K---DEIPEALKMLS   85 (382)
T ss_pred             hHhhhhhHHHHhccc-CceEEEeccCCchhHHHHHHHHHHHhhcc----cceeeehHhhhcCCc-H---HHHHHHHHHHH
Confidence            444444555555444 59999999999999999999999999876    35455555   4443 3   34444   456


Q ss_pred             HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+|..+..|+.|+||+|.++++|++.|-.-|.+.. .|+.|-|.+|.|+.
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~-~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCT-DLEELYLNNCGLGP  134 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhcc-CHHHHhhhcCCCCh
Confidence            77777789999999999999999999888888866 99999999999997

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.75  E-value=1.7e-08  Score=100.48  Aligned_cols=189  Identities=18%  Similarity=0.218  Sum_probs=133.0

Q ss_pred             chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecc-ccccccCCCcccHHH---HHHH
Q 015056          209 FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSID-ISSFIENCPSSVVVE---LVSF  284 (414)
Q Consensus       209 s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~-tc~~~~~~~~~~~~~---Las~  284 (414)
                      +...+.+.+..|..- .++++++||||.++...|+.||+.+...+  +=.+-+|+=- +.++ -   .+.+..   |..+
T Consensus        15 T~eDvk~v~eel~~~-d~~~evdLSGNtigtEA~e~l~~~ia~~~--~L~vvnfsd~ftgr~-k---de~~~~L~~Ll~a   87 (388)
T COG5238          15 TKEDVKGVVEELEMM-DELVEVDLSGNTIGTEAMEELCNVIANVR--NLRVVNFSDAFTGRD-K---DELYSNLVMLLKA   87 (388)
T ss_pred             ccchhhHHHHHHHhh-cceeEEeccCCcccHHHHHHHHHHHhhhc--ceeEeehhhhhhccc-H---HHHHHHHHHHHHH
Confidence            455566777777774 59999999999999999999999999865  1222222211 3332 1   344444   4566


Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChh---hhhhcCc-----------
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPL---FSLGAGK-----------  350 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls---~aL~~nk-----------  350 (414)
                      |-.|.+|+..+||+|.++.++...|..-+.++. .|..|-|++|.++.-+    .+-++   ++|+.||           
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~NnGlGp~a----G~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLNNNGLGPIA----GGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCC-CceeEEeecCCCCccc----hhHHHHHHHHHHHHhhhccCCCceEE
Confidence            778899999999999999999999999999988 9999999999999722    22222   2334443           


Q ss_pred             --------------------ccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC
Q 015056          351 --------------------SLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE  400 (414)
Q Consensus       351 --------------------s~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N  400 (414)
                                          ++-+|+.+.+.          -++..|. +-.-+|+.|||+.|-||-.|-.+||.||..=
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl-~y~~~LevLDlqDNtft~~gS~~La~al~~W  241 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL-FYSHSLEVLDLQDNTFTLEGSRYLADALCEW  241 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH-HHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence                                22233333331          1111111 1166789999999999999999999999988


Q ss_pred             CCCcEEecCC
Q 015056          401 LKLVNINIRF  410 (414)
Q Consensus       401 ~~L~~LdLs~  410 (414)
                      +.|++|.++-
T Consensus       242 ~~lrEL~lnD  251 (388)
T COG5238         242 NLLRELRLND  251 (388)
T ss_pred             chhhhccccc
Confidence            8899888753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.38  E-value=3.8e-07  Score=101.17  Aligned_cols=174  Identities=22%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             ccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       197 ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      -+|++|.|++..-.....      ..+.++|++|+|++|.+.......+. .+       .+++.|.+..+.+ .   ..
T Consensus       118 ~~L~~L~Ls~n~l~~~~p------~~~l~~L~~L~Ls~n~~~~~~p~~~~-~l-------~~L~~L~L~~n~l-~---~~  179 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIP------RGSIPNLETLDLSNNMLSGEIPNDIG-SF-------SSLKVLDLGGNVL-V---GK  179 (968)
T ss_pred             CCCCEEECcCCccccccC------ccccCCCCEEECcCCcccccCChHHh-cC-------CCCCEEECccCcc-c---cc
Confidence            367777776551110000      12346788888888876533222211 11       3467777777765 3   22


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  356 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~  356 (414)
                      .+    ..+...++|+.|+|++|.+....    -..+.... +|++|+|++|.+++-        ....+....   +|+
T Consensus       180 ~p----~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~-~L~~L~L~~n~l~~~--------~p~~l~~l~---~L~  239 (968)
T PLN00113        180 IP----NSLTNLTSLEFLTLASNQLVGQI----PRELGQMK-SLKWIYLGYNNLSGE--------IPYEIGGLT---SLN  239 (968)
T ss_pred             CC----hhhhhCcCCCeeeccCCCCcCcC----ChHHcCcC-CccEEECcCCccCCc--------CChhHhcCC---CCC
Confidence            22    23456778888888888875432    23344455 888888888888761        223454444   489


Q ss_pred             eeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          357 LLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       357 ~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|+|+      .+...+.+  -++|++|+|++|.++...-.    .+..-++|++|++++|.++
T Consensus       240 ~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        240 HLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGPIPP----SIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             EEECcCceeccccChhHhC--CCCCCEEECcCCeeeccCch----hHhhccCcCEEECcCCeec
Confidence            99985      23333444  57899999999988654322    3344578999999999763

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.27  E-value=1.2e-06  Score=97.26  Aligned_cols=38  Identities=8%  Similarity=0.009  Sum_probs=23.9

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      -.+|+.|+|++|.++..-.    ..+..-++|++|++++|.+
T Consensus       307 l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIP----VALTSLPRLQVLQLWSNKF  344 (968)
T ss_pred             CCCCcEEECCCCccCCcCC----hhHhcCCCCCEEECcCCCC
Confidence            3567777777777664322    2344456778888877765

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=98.21  E-value=9.1e-07  Score=93.03  Aligned_cols=193  Identities=16%  Similarity=0.060  Sum_probs=136.1

Q ss_pred             cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhH------------------------HHHHHhhhcCccccccccceee
Q 015056          208 RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF------------------------VEGICRSLCSKRKRIHKIENLS  263 (414)
Q Consensus       208 ~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~------------------------m~~LC~~L~~p~v~~C~lq~ls  263 (414)
                      +++..+..++..=..+  .|++|+|+.|...++-                        ++.+.+.+..+++..=-..+++
T Consensus       199 lsskfis~l~~qsg~~--~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls  276 (553)
T KOG4242|consen  199 LSSKFISKLLIQSGRL--WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLS  276 (553)
T ss_pred             hhhhHHHHhhhhhccc--cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhc
Confidence            3555555555222222  4788888888665554                        5677788888764333344445


Q ss_pred             ccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhc----------cCC-C--------------
Q 015056          264 IDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL----------EAS-S--------------  318 (414)
Q Consensus       264 l~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll----------~~~-C--------------  318 (414)
                      .+.|+  ..++.+...+...+.++-.++ ||++...++.+|.++.+.-++-          |+. |              
T Consensus       277 ~ng~s--~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g  353 (553)
T KOG4242|consen  277 RNGTS--PSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFG  353 (553)
T ss_pred             cCCCC--cccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccc
Confidence            55666  467899999999999999999 9999999999999999998881          111 2              


Q ss_pred             -CccEEeccCCCCCCcccccCCCChhhhhhcCcc------------------------------cCCcceeehH------
Q 015056          319 -SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS------------------------------LQSLRLLNLS------  361 (414)
Q Consensus       319 -~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks------------------------------~~~L~~LnLs------  361 (414)
                       .+|+|++++|.+.+.+...      .++..+++                              +.-++.++++      
T Consensus       354 ~R~q~l~~rdnnldgeg~~v------gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka  427 (553)
T KOG4242|consen  354 QRVQVLLQRDNNLDGEGGAV------GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA  427 (553)
T ss_pred             eeeeEeeccccccccccccc------cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc
Confidence             7899999999998733211      12223332                              2223333332      


Q ss_pred             ---HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 ---HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 ---~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                         ..-.+++.  +.++++|+|++|++|+.|+..|+++++.|..|+.+-.+.|.+
T Consensus       428 ~l~s~in~l~s--tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p  480 (553)
T KOG4242|consen  428 GLESAINKLLS--TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP  480 (553)
T ss_pred             cHHHHHHhhcc--CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence               22222333  788899999999999999999999999999999999999975

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.4e-06  Score=91.02  Aligned_cols=216  Identities=21%  Similarity=0.233  Sum_probs=126.9

Q ss_pred             HHHHHHhccCCC---CcCCC---CCCchHHHHHHHHHHHHHHHHHhhhccCCccccC---CCCCchHHHHHhhhhhhhcc
Q 015056           86 VWKKLFKTRWSG---FTDQI---EPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLI---SDINISDTILNYIGYEQQMN  156 (414)
Q Consensus        86 ~Wkrl~~~RW~~---~~~~~---~~~~Wkq~y~E~hlq~~l~eaae~a~~p~F~g~i---~~~~~~~~i~~~i~~~~~~~  156 (414)
                      -|+|-|++|.|.   +.++.   .|.|--+.|-||-+++             +.|..   .+.+++.+-++.||++.-+.
T Consensus        49 dgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~~ery~e~-------------~s~~sd~~~~~si~nK~vE~iGfDki~a  115 (505)
T KOG3207|consen   49 DGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTFKERYYEK-------------YSYSSDLESVLSISNKQVEFIGFDKIAA  115 (505)
T ss_pred             cceeeeeeecCCCccccCCccCCCCccHHHHHHHHHHHh-------------hcCCcchhhHhhhcCceeEEecHHHHHH
Confidence            489999999999   66664   2889999998887653             22222   33556666777788777654


Q ss_pred             hhccccccccccccccccchhhhcccccccchhhhc---hhccc-cccceeeeec--cchHhHHHHHHHHhhCCCCCcEE
Q 015056          157 HLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQ---LLRES-KLQSLVLRWI--RFEEHVQALCKLLIQNSETLASL  230 (414)
Q Consensus       157 ~~~~~~s~l~~~~~~~~~yvr~l~l~~~l~~~~~~~---l~~~c-kLq~L~L~~~--~s~~~~~~L~~~L~~n~~tLt~L  230 (414)
                      =+ ++|+||           |-..|+|  ++|+...   -.+.| .+..|.|+.-  -+-..+..++..|    ++|+.|
T Consensus       116 kQ-sn~kkL-----------~~IsLdn--~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL----p~Le~L  177 (505)
T KOG3207|consen  116 KQ-SNLKKL-----------REISLDN--YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL----PSLENL  177 (505)
T ss_pred             Hh-hhHHhh-----------hheeecC--ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhc----ccchhc
Confidence            33 456664           2222222  1111111   11222 3333444433  1112222333333    699999


Q ss_pred             EcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHH
Q 015056          231 EFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF  310 (414)
Q Consensus       231 ~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~  310 (414)
                      +|+-|.|...-=...=+.+.|       ++.|.++.|++ +      |.++-..+...++|..|.|..|.  +-+++.  
T Consensus       178 Nls~Nrl~~~~~s~~~~~l~~-------lK~L~l~~CGl-s------~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~--  239 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTLLLSH-------LKQLVLNSCGL-S------WKDVQWILLTFPSLEVLYLEANE--IILIKA--  239 (505)
T ss_pred             ccccccccCCccccchhhhhh-------hheEEeccCCC-C------HHHHHHHHHhCCcHHHhhhhccc--ccceec--
Confidence            999987654332222233333       34788889998 4      77899999999999999999995  111111  


Q ss_pred             HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH
Q 015056          311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS  361 (414)
Q Consensus       311 ~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs  361 (414)
                       .=..-.|.|++|||++|++-+    +.-.   ..+   -.+.+|+.||++
T Consensus       240 -~~~~i~~~L~~LdLs~N~li~----~~~~---~~~---~~l~~L~~Lnls  279 (505)
T KOG3207|consen  240 -TSTKILQTLQELDLSNNNLID----FDQG---YKV---GTLPGLNQLNLS  279 (505)
T ss_pred             -chhhhhhHHhhccccCCcccc----cccc---ccc---ccccchhhhhcc
Confidence             112345699999999999887    3222   122   233447777773

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.59  E-value=9.5e-06  Score=87.67  Aligned_cols=106  Identities=24%  Similarity=0.140  Sum_probs=72.7

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------  361 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------  361 (414)
                      +++|+.|+||.|.+..-.-..    +.-.+ .|++|.|++|.|+.    ..-    .++...+   +|..|||+      
T Consensus       316 tqkL~~LdLs~N~i~~l~~~s----f~~L~-~Le~LnLs~Nsi~~----l~e----~af~~ls---sL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGS----FRVLS-QLEELNLSHNSIDH----LAE----GAFVGLS---SLHKLDLRSNELSW  379 (873)
T ss_pred             cccceeEeccccccccCChhH----HHHHH-HhhhhcccccchHH----HHh----hHHHHhh---hhhhhcCcCCeEEE
Confidence            689999999999986432221    11222 78889999999986    111    2553334   49999993      


Q ss_pred             HHHhhccccC-CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 HIAASLGKFF-GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 ~l~~agvk~L-~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+.|+-+-|= =.+|++|.+.||.+.+--=+    |...=..|++||||+|.|
T Consensus       380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr----Afsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR----AFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             EEecchhhhccchhhhheeecCceeeecchh----hhccCcccceecCCCCcc
Confidence            3444333322 46789999999999875544    445568899999999987

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=97.37  E-value=0.00018  Score=47.82  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=26.1

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhcc
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLE  315 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~  315 (414)
                      +++|+.|+|++|.++|+|++.|+.+|.+
T Consensus         1 n~~L~~LdL~~N~i~~~G~~~L~~~L~~   28 (28)
T smart00368        1 NPSLRELDLSNNKLGDEGARALAEALKD   28 (28)
T ss_pred             CCccCEEECCCCCCCHHHHHHHHHHhcC
Confidence            5789999999999999999999999875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=9.3e-05  Score=75.11  Aligned_cols=128  Identities=24%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCccccc
Q 015056          259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKY  337 (414)
Q Consensus       259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~  337 (414)
                      +|++.+....+ +      -..+--+|+-|+.|+.|.|-|+.|+|.-|.    .+-..+ +|..|+|+.| .||+    .
T Consensus       187 lq~lDLS~s~i-t------~stl~~iLs~C~kLk~lSlEg~~LdD~I~~----~iAkN~-~L~~lnlsm~sG~t~----n  250 (419)
T KOG2120|consen  187 LQHLDLSNSVI-T------VSTLHGILSQCSKLKNLSLEGLRLDDPIVN----TIAKNS-NLVRLNLSMCSGFTE----N  250 (419)
T ss_pred             hHHhhcchhhe-e------HHHHHHHHHHHHhhhhccccccccCcHHHH----HHhccc-cceeeccccccccch----h
Confidence            55555554444 3      124566777778888888888888776443    344455 7778877765 4554    1


Q ss_pred             CCCChhhhhhcCcccCCcceeehH------HHHhhccccCCCceeEEEeeccc--CCchhHHHHHHHHhcCCCCcEEecC
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS------HIAASLGKFFGTSVQVLNIGAIG--LGSSGFRVLQDGVTKELKLVNINIR  409 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~--lg~~gcqaLa~aL~~N~~L~~LdLs  409 (414)
                      +   + +.+.  .|.++|..|||+      +...+.|...+-+|..|||+|++  |+..   .++..-.+-+.|++||||
T Consensus       251 ~---~-~ll~--~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  251 A---L-QLLL--SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             H---H-HHHH--HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccc
Confidence            0   1 2221  223457777774      22333444456677778887775  3333   666666677778888877


Q ss_pred             CC
Q 015056          410 FK  411 (414)
Q Consensus       410 ~N  411 (414)
                      -|
T Consensus       322 D~  323 (419)
T KOG2120|consen  322 DS  323 (419)
T ss_pred             cc
Confidence            65

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.33  E-value=0.00018  Score=78.05  Aligned_cols=149  Identities=21%  Similarity=0.228  Sum_probs=74.8

Q ss_pred             CcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhH
Q 015056          227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG  306 (414)
Q Consensus       227 Lt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~ga  306 (414)
                      -..|||++|.|++-++.-.-   --|.     +|.+.+++=.+ +        .+-++-....+|++|+|.+|.+..=-.
T Consensus        80 t~~LdlsnNkl~~id~~~f~---nl~n-----Lq~v~l~~N~L-t--------~IP~f~~~sghl~~L~L~~N~I~sv~s  142 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFY---NLPN-----LQEVNLNKNEL-T--------RIPRFGHESGHLEKLDLRHNLISSVTS  142 (873)
T ss_pred             eeeeeccccccccCcHHHHh---cCCc-----ceeeeeccchh-h--------hcccccccccceeEEeeeccccccccH
Confidence            45799999988776655221   1222     55555554444 3        222333334456666666666643332


Q ss_pred             HHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC---CCceeEEEee
Q 015056          307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF---GTSVQVLNIG  381 (414)
Q Consensus       307 klL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L---~c~Lq~L~L~  381 (414)
                      .    .|.-.+ .|++||||.|.|+.    .--    ..+...-+   +++|||+  .+.+-....+   + +|.+|.|+
T Consensus       143 e----~L~~l~-alrslDLSrN~is~----i~~----~sfp~~~n---i~~L~La~N~It~l~~~~F~~ln-sL~tlkLs  205 (873)
T KOG4194|consen  143 E----ELSALP-ALRSLDLSRNLISE----IPK----PSFPAKVN---IKKLNLASNRITTLETGHFDSLN-SLLTLKLS  205 (873)
T ss_pred             H----HHHhHh-hhhhhhhhhchhhc----ccC----CCCCCCCC---ceEEeeccccccccccccccccc-hheeeecc
Confidence            2    223333 56666666666665    101    12222222   5666664  3333333222   3 66666666


Q ss_pred             cccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          382 AIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       382 ~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .|+++..--..    .+.=++|+.|||-.|+|
T Consensus       206 rNrittLp~r~----Fk~L~~L~~LdLnrN~i  233 (873)
T KOG4194|consen  206 RNRITTLPQRS----FKRLPKLESLDLNRNRI  233 (873)
T ss_pred             cCcccccCHHH----hhhcchhhhhhccccce
Confidence            66666543322    22335566666666655

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=97.31  E-value=0.00017  Score=47.97  Aligned_cols=27  Identities=26%  Similarity=0.478  Sum_probs=25.3

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHh
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVT  398 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~  398 (414)
                      +++|++|||++|.||++|+.+|+++|.
T Consensus         1 n~~L~~LdL~~N~i~~~G~~~L~~~L~   27 (28)
T smart00368        1 NPSLRELDLSNNKLGDEGARALAEALK   27 (28)
T ss_pred             CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence            478999999999999999999999985

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.31  E-value=0.0014  Score=66.21  Aligned_cols=206  Identities=19%  Similarity=0.099  Sum_probs=118.0

Q ss_pred             cc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccc-----cccccceeecccccc
Q 015056          196 ES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK-----RIHKIENLSIDISSF  269 (414)
Q Consensus       196 ~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v-----~~C~lq~lsl~tc~~  269 (414)
                      .| ++|+.+|++-........+-..++.+...|.||-|+.|.+++.+=..|-.+|.|-.+     -.-.++-+..+.-++
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            44 788888888744445555666666666688888888888888776655555443210     011233444444454


Q ss_pred             ccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHH-HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhc
Q 015056          270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF-SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA  348 (414)
Q Consensus       270 ~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~-~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~  348 (414)
                       ++-   .-...|..|.+-+.|+.+++-.|-+.++|+-+|. .+|.-.. +|+.|||-+|-+|-    ...++++.++..
T Consensus       170 -eng---s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~-~LevLDlqDNtft~----~gS~~La~al~~  240 (388)
T COG5238         170 -ENG---SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSH-SLEVLDLQDNTFTL----EGSRYLADALCE  240 (388)
T ss_pred             -ccC---cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhC-cceeeeccccchhh----hhHHHHHHHhcc
Confidence             422   2223466667777888888888888888876654 4555555 88888888888886    334555555533


Q ss_pred             CcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHH--HHHHHhcC-CCCcEEecCCCCC
Q 015056          349 GKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRV--LQDGVTKE-LKLVNINIRFKPI  413 (414)
Q Consensus       349 nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqa--La~aL~~N-~~L~~LdLs~N~i  413 (414)
                      =+   .|+.|+|.          ++-++..+....+|+.|-..+|-+.-..-..  +-...+.+ +-|..|.+.+|+|
T Consensus       241 W~---~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         241 WN---LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             cc---hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            22   26666661          2222222222556666666655543333322  33333333 2244455555554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.15  E-value=0.00031  Score=78.65  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=24.9

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .+|+.|++++|.|+.     |-..+..=++|+.|+|++|+|+
T Consensus       422 ~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        422 SGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCCCC
Confidence            356667777777763     3333444568889999999875

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.13  E-value=0.00076  Score=75.26  Aligned_cols=36  Identities=8%  Similarity=0.222  Sum_probs=24.9

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ..+|+.|+|++|.|+..-     ..+.  ++|++|+|++|+|+
T Consensus       345 ~~sL~~L~Ls~N~L~~LP-----~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        345 PPELQVLDVSKNQITVLP-----ETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             cCcccEEECCCCCCCcCC-----hhhc--CCcCEEECCCCcCC
Confidence            357888888888887421     1121  57899999998873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.11  E-value=0.00073  Score=75.72  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=23.0

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|+.|+|++|.|+..-.        .-++|+.|++++|.|+
T Consensus       382 ~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLT  415 (788)
T ss_pred             cccceEEecCCcccCCCC--------cccCCCEEEccCCcCC
Confidence            467888888888774321        1246888888888764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.07  E-value=0.0002  Score=66.59  Aligned_cols=37  Identities=16%  Similarity=0.207  Sum_probs=10.7

Q ss_pred             ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|++|+|++|.+.+.+-  + ..|..-++|++|++.+|.|
T Consensus        89 ~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             T--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GG
T ss_pred             cCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcc
Confidence            44445555554444321  1 2233344455555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.07  E-value=5.4e-05  Score=83.58  Aligned_cols=81  Identities=25%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEEeecccC
Q 015056          311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGL  385 (414)
Q Consensus       311 ~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~l  385 (414)
                      .+|.=.+ .++.|+||+|+++.      |.    .|   +-+..|+||||+     .|-..+..  +|.|+.|+|++|.+
T Consensus       181 ~SLqll~-ale~LnLshNk~~~------v~----~L---r~l~~LkhLDlsyN~L~~vp~l~~~--gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  181 ESLQLLP-ALESLNLSHNKFTK------VD----NL---RRLPKLKHLDLSYNCLRHVPQLSMV--GCKLQLLNLRNNAL  244 (1096)
T ss_pred             HHHHHHH-Hhhhhccchhhhhh------hH----HH---Hhcccccccccccchhccccccchh--hhhheeeeecccHH
Confidence            3343344 67777788888887      54    22   334457788875     22222223  78899999999999


Q ss_pred             CchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          386 GSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       386 g~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +..=+      +.+=.+|..||++.|=|
T Consensus       245 ~tL~g------ie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  245 TTLRG------IENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             Hhhhh------HHhhhhhhccchhHhhh
Confidence            88533      23336688999998865

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.82  E-value=0.0026  Score=71.05  Aligned_cols=40  Identities=15%  Similarity=0.150  Sum_probs=21.1

Q ss_pred             ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|+.|++++|.|+.. -..+...+...+.+..|++++|.|+
T Consensus       389 sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 ALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence            355555555555431 1123333333466777888888764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.76  E-value=0.00061  Score=69.55  Aligned_cols=98  Identities=26%  Similarity=0.310  Sum_probs=70.5

Q ss_pred             CcccEEEccCCCCC--chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056          289 RSLCSLKLRHCHLD--RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA  364 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~--d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~  364 (414)
                      +-|+.++||+|.+.  ||.+|+       -+ .++.|++|+|.|+.      =+    .|   ..+.+|++||||  .++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL-------~P-kir~L~lS~N~i~~------v~----nL---a~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKL-------AP-KLRRLILSQNRIRT------VQ----NL---AELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhhhccccccchhhhhhhhhh-------cc-ceeEEeccccceee------eh----hh---hhcccceEeecccchhH
Confidence            77899999999885  666666       35 79999999999997      32    23   334459999996  222


Q ss_pred             hhccccC-CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ASLGKFF-GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ~agvk~L-~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .-.+-.. =.++++|+|++|.+.+..+      |.+=-+|..||+++|+|
T Consensus       343 ~~~Gwh~KLGNIKtL~La~N~iE~LSG------L~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  343 ECVGWHLKLGNIKTLKLAQNKIETLSG------LRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hhhhhHhhhcCEeeeehhhhhHhhhhh------hHhhhhheeccccccch
Confidence            2111100 3567999999999888644      45556789999999987

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0031  Score=64.36  Aligned_cols=169  Identities=20%  Similarity=0.225  Sum_probs=98.9

Q ss_pred             ccchhhhchhccc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCcccccccccee
Q 015056          185 LCVEETCQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENL  262 (414)
Q Consensus       185 l~~~~~~~l~~~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~l  262 (414)
                      +.+.....++..| |||+|.|+.+.-+   ++++..++.|. +|++|+|++++ ++..++..+.++...=       +.|
T Consensus       197 it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs~L-------~~L  265 (419)
T KOG2120|consen  197 ITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCSRL-------DEL  265 (419)
T ss_pred             eeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccc-cceeeccccccccchhHHHHHHHhhhhH-------hhc
Confidence            3333444567777 8888877766322   35677788885 99999998763 5566666666665433       355


Q ss_pred             eccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC--CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCC
Q 015056          263 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH--LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRS  340 (414)
Q Consensus       263 sl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~--L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~  340 (414)
                      -+.=|.+ +   .+.-.  +.+=.-..+|+.|+|+|..  |++.-+..|.   ..-+ +|..||||+|.--.    -   
T Consensus       266 NlsWc~l-~---~~~Vt--v~V~hise~l~~LNlsG~rrnl~~sh~~tL~---~rcp-~l~~LDLSD~v~l~----~---  328 (419)
T KOG2120|consen  266 NLSWCFL-F---TEKVT--VAVAHISETLTQLNLSGYRRNLQKSHLSTLV---RRCP-NLVHLDLSDSVMLK----N---  328 (419)
T ss_pred             CchHhhc-c---chhhh--HHHhhhchhhhhhhhhhhHhhhhhhHHHHHH---HhCC-ceeeeccccccccC----c---
Confidence            5555665 3   12211  2222335778888888752  3333222222   2233 78899999885332    1   


Q ss_pred             ChhhhhhcCcccCCcceeehH----HHHhhccccC-CCceeEEEeeccc
Q 015056          341 GPLFSLGAGKSLQSLRLLNLS----HIAASLGKFF-GTSVQVLNIGAIG  384 (414)
Q Consensus       341 ~ls~aL~~nks~~~L~~LnLs----~l~~agvk~L-~c~Lq~L~L~~c~  384 (414)
                      +...++-+.+.   |+||.|+    ...+.++.+= -.++..||+-||-
T Consensus       329 ~~~~~~~kf~~---L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  329 DCFQEFFKFNY---LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hHHHHHHhcch---heeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            23345644444   9999996    3344444422 4677888887653

>PLN03210 Resistant to P

Probab=96.64  E-value=0.0029  Score=73.31  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=19.6

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF  410 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~  410 (414)
                      ++|+.|+|++|+++.     +-..+..-++|+.|++++
T Consensus       846 ~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        846 TNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             cccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCC
Confidence            466777777777663     222344445666776665

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.61  E-value=0.00049  Score=75.45  Aligned_cols=149  Identities=19%  Similarity=0.207  Sum_probs=84.4

Q ss_pred             cEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC------
Q 015056          228 ASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL------  301 (414)
Q Consensus       228 t~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L------  301 (414)
                      +-.||++|+++++-+..       ...+--.|+-|-++...+|.     +|++|+.    .+.|.||.+++|.|      
T Consensus        10 rGvDfsgNDFsg~~FP~-------~v~qMt~~~WLkLnrt~L~~-----vPeEL~~----lqkLEHLs~~HN~L~~vhGE   73 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPH-------DVEQMTQMTWLKLNRTKLEQ-----VPEELSR----LQKLEHLSMAHNQLISVHGE   73 (1255)
T ss_pred             ecccccCCcCCCCcCch-------hHHHhhheeEEEechhhhhh-----ChHHHHH----HhhhhhhhhhhhhhHhhhhh
Confidence            34578888887543220       00011346667777777733     5555543    45556666665555      


Q ss_pred             -----------------CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-HH
Q 015056          302 -----------------DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI  363 (414)
Q Consensus       302 -----------------~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-~l  363 (414)
                                       ...|+.-   -+.+.. .|++||||+|++++      |.   ..|..-|+   +.+|||| .=
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~---diF~l~-dLt~lDLShNqL~E------vP---~~LE~AKn---~iVLNLS~N~  137 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPT---DIFRLK-DLTILDLSHNQLRE------VP---TNLEYAKN---SIVLNLSYNN  137 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCc---hhcccc-cceeeecchhhhhh------cc---hhhhhhcC---cEEEEcccCc
Confidence                             3333322   122233 67788888888888      54   55655566   7788885 11


Q ss_pred             HhhccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 AASLGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 ~~agvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      -+..-..|   =+-|--|||+.|++...--|     ++.=.+|++|+||+|.+
T Consensus       138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-----~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-----IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             cccCCchHHHhhHhHhhhccccchhhhcCHH-----HHHHhhhhhhhcCCChh
Confidence            11111111   23456678888887664443     34556788888888865

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.45  E-value=0.0022  Score=64.34  Aligned_cols=145  Identities=22%  Similarity=0.218  Sum_probs=93.7

Q ss_pred             CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056          226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  305 (414)
Q Consensus       226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g  305 (414)
                      +|++|++++|++..     +.+.+..+.    ++++|.+..+.+ +        ++.........|+.|++++|++.+=-
T Consensus       141 nL~~L~l~~N~i~~-----l~~~~~~l~----~L~~L~l~~N~l-~--------~l~~~~~~~~~L~~L~ls~N~i~~l~  202 (394)
T COG4886         141 NLKELDLSDNKIES-----LPSPLRNLP----NLKNLDLSFNDL-S--------DLPKLLSNLSNLNNLDLSGNKISDLP  202 (394)
T ss_pred             hcccccccccchhh-----hhhhhhccc----cccccccCCchh-h--------hhhhhhhhhhhhhheeccCCccccCc
Confidence            78888888887644     223344443    577777777776 4        34554446788889999999987765


Q ss_pred             HHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeEEEee
Q 015056          306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQVLNIG  381 (414)
Q Consensus       306 aklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~L~L~  381 (414)
                      ..+      .....|++|+++.|.+-.      .  . ..+...++   +..|.++  .+.+  ..... -.+++.|+++
T Consensus       203 ~~~------~~~~~L~~l~~~~N~~~~------~--~-~~~~~~~~---l~~l~l~~n~~~~~~~~~~~-l~~l~~L~~s  263 (394)
T COG4886         203 PEI------ELLSALEELDLSNNSIIE------L--L-SSLSNLKN---LSGLELSNNKLEDLPESIGN-LSNLETLDLS  263 (394)
T ss_pred             hhh------hhhhhhhhhhhcCCccee------c--c-hhhhhccc---ccccccCCceeeeccchhcc-ccccceeccc
Confidence            543      223368889999995332      1  1 22323333   4444443  2221  22221 3459999999


Q ss_pred             cccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          382 AIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       382 ~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|.+++.-.      +..-.+|++|++++|.+
T Consensus       264 ~n~i~~i~~------~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         264 NNQISSISS------LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccccccccc------ccccCccCEEeccCccc
Confidence            999999766      56678999999999876

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.35  E-value=0.0027  Score=59.17  Aligned_cols=85  Identities=25%  Similarity=0.239  Sum_probs=15.7

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~  302 (414)
                      |+..+++|+|.||.+  ..++    .|...-   -.++.|.+..+.+ +        .+ ..|...+.|+.|+|++|.+.
T Consensus        17 n~~~~~~L~L~~n~I--~~Ie----~L~~~l---~~L~~L~Ls~N~I-~--------~l-~~l~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI--STIE----NLGATL---DKLEVLDLSNNQI-T--------KL-EGLPGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             -------------------------S--TT----TT--EEE-TTS---S-----------TT----TT--EEE--SS---
T ss_pred             ccccccccccccccc--cccc----chhhhh---cCCCEEECCCCCC-c--------cc-cCccChhhhhhcccCCCCCC
Confidence            445678888887743  1111    111100   1244555555554 3        11 23444566666666666665


Q ss_pred             chhHHHHHHHhc-cCCCCccEEeccCCCCCC
Q 015056          303 RDFGRMVFSSLL-EASSSLSILDLSGNSIGG  332 (414)
Q Consensus       303 d~gaklL~~~Ll-~~~C~L~~LdLs~n~Lt~  332 (414)
                      +-+.     ++. ..+ +|++|+|++|+|.+
T Consensus        78 ~i~~-----~l~~~lp-~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   78 SISE-----GLDKNLP-NLQELYLSNNKISD  102 (175)
T ss_dssp             S-CH-----HHHHH-T-T--EEE-TTS---S
T ss_pred             cccc-----chHHhCC-cCCEEECcCCcCCC
Confidence            4321     111 123 56666666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.18  E-value=0.0022  Score=70.51  Aligned_cols=101  Identities=24%  Similarity=0.229  Sum_probs=54.6

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC--------------
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS--------------  354 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~--------------  354 (414)
                      ..|-.|+||+|+|+---     ...+..+ .||+|+||+|-+.-           +-|...-++++              
T Consensus       150 tDLLfLDLS~NrLe~LP-----PQ~RRL~-~LqtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  150 TDLLFLDLSNNRLEMLP-----PQIRRLS-MLQTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             HhHhhhccccchhhhcC-----HHHHHHh-hhhhhhcCCChhhH-----------HHHhcCccchhhhhhhcccccchhh
Confidence            45667889999874211     1112223 78899999997764           12222222222              


Q ss_pred             -----------cceeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          355 -----------LRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       355 -----------L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                                 |+.+|||     .+-+.+-+  =-+|++|||++|.+|....     ....=.+|.+||+|.|++
T Consensus       213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYK--LRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             cCCCchhhhhhhhhccccccCCCcchHHHhh--hhhhheeccCcCceeeeec-----cHHHHhhhhhhccccchh
Confidence                       3334443     33444444  4566777777777765322     112234567777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.12  E-value=0.0036  Score=70.91  Aligned_cols=71  Identities=18%  Similarity=0.075  Sum_probs=39.4

Q ss_pred             hhccccccccccccccccchhhhcccccccchhhhchhccccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCC
Q 015056          157 HLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK  236 (414)
Q Consensus       157 ~~~~~~s~l~~~~~~~~~yvr~l~l~~~l~~~~~~~l~~~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~  236 (414)
                      |++-+.+.+    -..|...+.|-.+.-.=+ ++..-+.--++|++.++    .....++- ..+.-+.+|+-|+..+|.
T Consensus       206 c~rn~ls~l----~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis----~n~l~~lp-~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  206 CERNQLSEL----EISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDIS----HNNLSNLP-EWIGACANLEALNANHNR  275 (1081)
T ss_pred             hhhcccceE----EecCcchheeeeccCcce-eeccccccccceeeecc----hhhhhcch-HHHHhcccceEecccchh
Confidence            444444443    334555555555543322 34444556677666433    44444444 444445699999999998


Q ss_pred             C
Q 015056          237 L  237 (414)
Q Consensus       237 L  237 (414)
                      |
T Consensus       276 l  276 (1081)
T KOG0618|consen  276 L  276 (1081)
T ss_pred             H
Confidence            7

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.04  E-value=0.056  Score=54.25  Aligned_cols=138  Identities=21%  Similarity=0.180  Sum_probs=85.8

Q ss_pred             cchhhhcccccccchh--hhchhccc-cccceeeeec--cchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHh
Q 015056          174 HYARCLRLQNALCVEE--TCQLLRES-KLQSLVLRWI--RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICR  247 (414)
Q Consensus       174 ~yvr~l~l~~~l~~~~--~~~l~~~c-kLq~L~L~~~--~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~  247 (414)
                      .|.+.|.+...-...+  .......| +|+.|.+..+  .....-.... .+....+.|++|+++++. +++.++..+.+
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL-LLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh-hhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5777777777666665  33454444 7888877652  1111111111 244445689999999998 88888887766


Q ss_pred             hhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC-chhHHHHHHHhccCCCCccEEecc
Q 015056          248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD-RDFGRMVFSSLLEASSSLSILDLS  326 (414)
Q Consensus       248 ~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~-d~gaklL~~~Ll~~~C~L~~LdLs  326 (414)
                      ..       -++|.+.+..|.-.+      ...+.+....+++|++|+|++...- |.+...+..   ..+ .+++|.+.
T Consensus       267 ~c-------~~L~~L~l~~c~~lt------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~---~c~-~l~~l~~~  329 (482)
T KOG1947|consen  267 RC-------PNLETLSLSNCSNLT------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK---NCP-NLRELKLL  329 (482)
T ss_pred             hC-------CCcceEccCCCCccc------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH---hCc-chhhhhhh
Confidence            51       247788877777214      3478888888899999999977764 555555422   222 45555544


Q ss_pred             CCC
Q 015056          327 GNS  329 (414)
Q Consensus       327 ~n~  329 (414)
                      ...
T Consensus       330 ~~~  332 (482)
T KOG1947|consen  330 SLN  332 (482)
T ss_pred             hcC
Confidence            443

>PLN03210 Resistant to P

Probab=95.75  E-value=0.011  Score=68.57  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=18.9

Q ss_pred             hccccccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccC
Q 015056          194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC  235 (414)
Q Consensus       194 ~~~ckLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~  235 (414)
                      +.-.+|+.|.+.+..-.    .+-.. +.+.++|+.|+|+++
T Consensus       608 f~~~~L~~L~L~~s~l~----~L~~~-~~~l~~Lk~L~Ls~~  644 (1153)
T PLN03210        608 FRPENLVKLQMQGSKLE----KLWDG-VHSLTGLRNIDLRGS  644 (1153)
T ss_pred             CCccCCcEEECcCcccc----ccccc-cccCCCCCEEECCCC
Confidence            34456666666654111    11111 234567788887765

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.73  E-value=0.00037  Score=66.52  Aligned_cols=158  Identities=23%  Similarity=0.276  Sum_probs=99.9

Q ss_pred             eccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeec---cccccccCCCcccHHHHH
Q 015056          206 WIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSI---DISSFIENCPSSVVVELV  282 (414)
Q Consensus       206 ~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl---~tc~~~~~~~~~~~~~La  282 (414)
                      .+.|..++.++|.+     ++.|.|.|+||++.-          ..|..  -.+.++++   ..-.+ +        ++-
T Consensus        19 giSsf~~~~gLf~~-----s~ITrLtLSHNKl~~----------vppni--a~l~nlevln~~nnqi-e--------~lp   72 (264)
T KOG0617|consen   19 GISSFEELPGLFNM-----SNITRLTLSHNKLTV----------VPPNI--AELKNLEVLNLSNNQI-E--------ELP   72 (264)
T ss_pred             ccccHhhcccccch-----hhhhhhhcccCceee----------cCCcH--HHhhhhhhhhcccchh-h--------hcC
Confidence            34555666666543     578999999998742          22221  22223332   23333 3        555


Q ss_pred             HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc-cCCcceeehH
Q 015056          283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS-LQSLRLLNLS  361 (414)
Q Consensus       283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks-~~~L~~LnLs  361 (414)
                      --+++-+.|++|+++-|+|     .++=++.-.-+ .|+.|||++|++.+      .     .|--|-. +..|+-|.|+
T Consensus        73 ~~issl~klr~lnvgmnrl-----~~lprgfgs~p-~levldltynnl~e------~-----~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen   73 TSISSLPKLRILNVGMNRL-----NILPRGFGSFP-ALEVLDLTYNNLNE------N-----SLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             hhhhhchhhhheecchhhh-----hcCccccCCCc-hhhhhhcccccccc------c-----cCCcchhHHHHHHHHHhc
Confidence            6667889999999998887     34445556667 89999999999998      2     2222211 3336666664


Q ss_pred             -----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 -----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 -----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                           .+--..++  =++||-|.++.|.+-+.     -+-+..=+.|++|+|-+|++
T Consensus       136 dndfe~lp~dvg~--lt~lqil~lrdndll~l-----pkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  136 DNDFEILPPDVGK--LTNLQILSLRDNDLLSL-----PKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             CCCcccCChhhhh--hcceeEEeeccCchhhC-----cHHHHHHHHHHHHhccccee
Confidence                 33334456  68899999999987542     23333335688999999886

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.69  E-value=0.0048  Score=39.09  Aligned_cols=24  Identities=13%  Similarity=0.318  Sum_probs=19.6

Q ss_pred             CCceeEEEeecccCCchhHHHHHH
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQD  395 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~  395 (414)
                      +++|++|+|++|.+|++|+++||+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            368999999999999999999985

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=95.18  E-value=0.0042  Score=70.45  Aligned_cols=88  Identities=25%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056          226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  305 (414)
Q Consensus       226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g  305 (414)
                      +|++|...+|.|-        ....+|.  .-+||++.++.-.+ +        .+.+.+..+.+|+.++...|.|-.--
T Consensus       220 ~l~~L~a~~n~l~--------~~~~~p~--p~nl~~~dis~n~l-~--------~lp~wi~~~~nle~l~~n~N~l~~lp  280 (1081)
T KOG0618|consen  220 SLTALYADHNPLT--------TLDVHPV--PLNLQYLDISHNNL-S--------NLPEWIGACANLEALNANHNRLVALP  280 (1081)
T ss_pred             chheeeeccCcce--------eeccccc--cccceeeecchhhh-h--------cchHHHHhcccceEecccchhHHhhH
Confidence            5666666666543        3344443  35688888888777 5        57788999999999999999993332


Q ss_pred             HHHHHH-Hh----------------ccCCCCccEEeccCCCCCC
Q 015056          306 GRMVFS-SL----------------LEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       306 aklL~~-~L----------------l~~~C~L~~LdLs~n~Lt~  332 (414)
                      .++-+. .|                +.+--.|++|||..|+|.+
T Consensus       281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~  324 (1081)
T KOG0618|consen  281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS  324 (1081)
T ss_pred             HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence            222211 11                2222267778888887776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.14  E-value=0.032  Score=55.99  Aligned_cols=117  Identities=22%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCC--CCCchhHHHHHHHhccCCCCccEEeccCCC-CCCccc
Q 015056          259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLS  335 (414)
Q Consensus       259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N--~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~  335 (414)
                      ++.+.+..|....      ...+......+..|+.|+++++  ...+.+.....  +...--.|++|+|+.+. +++.+ 
T Consensus       190 L~~l~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~-  260 (482)
T KOG1947|consen  190 LKRLSLSGCSKIT------DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG-  260 (482)
T ss_pred             hhHhhhcccccCC------hhhHHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh-
Confidence            6677777665533      1127777777888888888762  22222222211  22222267788888887 66611 


Q ss_pred             ccCCCChhhhhhcCcccCCcceeehH---HHHhhccccC--CCc-eeEEEeecccCC-chhHHHH
Q 015056          336 KYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFF--GTS-VQVLNIGAIGLG-SSGFRVL  393 (414)
Q Consensus       336 ~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~agvk~L--~c~-Lq~L~L~~c~lg-~~gcqaL  393 (414)
                            + .+++..  ..+|++|++.   .+-+.|...+  .|+ ||+|+|++|..- +.|=.++
T Consensus       261 ------l-~~l~~~--c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~  316 (482)
T KOG1947|consen  261 ------L-SALASR--CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL  316 (482)
T ss_pred             ------H-HHHHhh--CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence                  2 122221  1235565542   1222222222  444 778888777654 3333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.92  E-value=0.029  Score=40.91  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=29.3

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++||+|+|++|++++-..     .+..=++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~-----~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-----ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-----HGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCc-----hHhCCCCCCEEEecCCCCC
Confidence            478999999999998543     3677789999999999985

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.89  E-value=0.0057  Score=62.67  Aligned_cols=80  Identities=26%  Similarity=0.309  Sum_probs=44.4

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-HHHh
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAA  365 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-~l~~  365 (414)
                      -...+..|+||.|.+.-      +..|-+.+ +|+.||||+|.++.      |...  +..    +-+++.|+|+ ..-+
T Consensus       305 L~Pkir~L~lS~N~i~~------v~nLa~L~-~L~~LDLS~N~Ls~------~~Gw--h~K----LGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRT------VQNLAELP-QLQLLDLSGNLLAE------CVGW--HLK----LGNIKTLKLAQNKIE  365 (490)
T ss_pred             hccceeEEeccccceee------ehhhhhcc-cceEeecccchhHh------hhhh--Hhh----hcCEeeeehhhhhHh
Confidence            34566777777777632      34466666 77777777777776      4422  111    1235567774 1111


Q ss_pred             ---hccccCCCceeEEEeecccCCc
Q 015056          366 ---SLGKFFGTSVQVLNIGAIGLGS  387 (414)
Q Consensus       366 ---agvk~L~c~Lq~L~L~~c~lg~  387 (414)
                         .+.|  =-+|..||+++|++..
T Consensus       366 ~LSGL~K--LYSLvnLDl~~N~Ie~  388 (490)
T KOG1259|consen  366 TLSGLRK--LYSLVNLDLSSNQIEE  388 (490)
T ss_pred             hhhhhHh--hhhheeccccccchhh
Confidence               1222  3456677777776654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.84  E-value=0.015  Score=36.80  Aligned_cols=24  Identities=13%  Similarity=0.166  Sum_probs=18.6

Q ss_pred             CCcccEEEccCCCCCchhHHHHHH
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFS  311 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~  311 (414)
                      |++|++|+|++|++.++|++.|+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            578999999999999999998863

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.39  E-value=0.082  Score=58.93  Aligned_cols=41  Identities=32%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ..+|++|.+++-.+..+---.+|..+    -+|.+||+|+.+|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sF----pNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASF----PNLRSLDISGTNISN  187 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhcc----CccceeecCCCCccC
Confidence            45555666666555444422223322    255566666666665

>PLN03150 hypothetical protein; Provisional

Probab=94.08  E-value=0.097  Score=57.20  Aligned_cols=102  Identities=30%  Similarity=0.315  Sum_probs=57.0

Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------HH
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------HI  363 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------~l  363 (414)
                      .++.|+|++|.+.-..-    ..+.+.+ .|++|+|++|.|++.+        ...+....   +|+.|||+      .+
T Consensus       419 ~v~~L~L~~n~L~g~ip----~~i~~L~-~L~~L~Ls~N~l~g~i--------P~~~~~l~---~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIP----NDISKLR-HLQSINLSGNSIRGNI--------PPSLGSIT---SLEVLDLSYNSFNGSI  482 (623)
T ss_pred             EEEEEECCCCCccccCC----HHHhCCC-CCCEEECCCCcccCcC--------ChHHhCCC---CCCEEECCCCCCCCCC
Confidence            36777777777742211    2233444 7778888888777522        12333333   37777774      22


Q ss_pred             HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       364 ~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      -+.+.+  -.+|+.|+|++|.++..--..++..   -.++..+++++|.
T Consensus       483 P~~l~~--L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~  526 (623)
T PLN03150        483 PESLGQ--LTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA  526 (623)
T ss_pred             chHHhc--CCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence            233334  4567888888887765444444332   1345667777664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.85  E-value=0.089  Score=38.31  Aligned_cols=37  Identities=27%  Similarity=0.293  Sum_probs=26.9

Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +|++|+|++|++.+=..     .+...+ .|++|++++|.|++
T Consensus         2 ~L~~L~l~~N~i~~l~~-----~l~~l~-~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-----ELSNLP-NLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-----HGTTCT-TSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCc-----hHhCCC-CCCEEEecCCCCCC
Confidence            68888899998876222     266677 88899999998887

...

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=93.80  E-value=0.042  Score=55.21  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhccCCCC--CCcccCCChhhHHHHHhcCCch-hhhhhhccCCccccCCCCCCCcccccCcccccCCCc
Q 015056            7 LISLAALAVKRELLLGDDV--IPYVYELPADLFDILLTCLPPL-ALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNF   83 (414)
Q Consensus         7 L~~lC~~~i~~~~~~~~~~--~P~~~~Lp~~~~~~v~~~Lpp~-aL~~l~~~~p~~~~~~~~~~~~~~~~~~kr~r~~~~   83 (414)
                      .+-+=.|.+..+..-++.+  -|.+-+||.|.+--|+-|||.. -|.++..+.|.  -+.+..++-              
T Consensus       178 ~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~et--l~~l~~e~~--------------  241 (332)
T KOG3926|consen  178 ETILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWET--LAKLSEERR--------------  241 (332)
T ss_pred             HHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHH--HHHHHHHHH--------------
Confidence            3445566777777665443  3789999999999999999976 44444433332  012322332              


Q ss_pred             hHHHHHHHhccCCC-------CcCCCCCCchHHHHHH
Q 015056           84 NTVWKKLFKTRWSG-------FTDQIEPVDWQQRYWE  113 (414)
Q Consensus        84 ~~~Wkrl~~~RW~~-------~~~~~~~~~Wkq~y~E  113 (414)
                        .||.||+-+...       +.+--..-|||||||.
T Consensus       242 --iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~  276 (332)
T KOG3926|consen  242 --IWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQ  276 (332)
T ss_pred             --HHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHH
Confidence              899999988876       1111113679999995

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.49  E-value=0.033  Score=58.84  Aligned_cols=64  Identities=16%  Similarity=0.247  Sum_probs=37.0

Q ss_pred             cccccchhhhcccccccchh--hhchhccc-cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccC
Q 015056          170 QQFGHYARCLRLQNALCVEE--TCQLLRES-KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC  235 (414)
Q Consensus       170 ~~~~~yvr~l~l~~~l~~~~--~~~l~~~c-kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~  235 (414)
                      ..+|.|.|.|++..--++-.  .....++| ++++|.+..+.  .-.+..+..+.++.+.|+||+|..|
T Consensus       134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSC  200 (483)
T ss_pred             hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhccc
Confidence            56778888888887665422  22334456 56666666552  1123344455555566666666663

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.45  E-value=0.047  Score=58.03  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch-hHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056          259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  337 (414)
Q Consensus       259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~-gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~  337 (414)
                      +++.++..|.. +    .+...  ...+.+..++.|+||+|-+-.- -+.-+++-|   + +|+.|.||.|.+..    .
T Consensus       123 L~~IsLdn~~V-~----~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL---p-~Le~LNls~Nrl~~----~  187 (505)
T KOG3207|consen  123 LREISLDNYRV-E----DAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL---P-SLENLNLSSNRLSN----F  187 (505)
T ss_pred             hhheeecCccc-c----ccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhc---c-cchhcccccccccC----C
Confidence            56666766665 3    11111  5666677777777777766432 223333333   3 56667777776654    2


Q ss_pred             CCCChhhhhhcCcccCCcceeehH-------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS-------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF  410 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs-------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~  410 (414)
                      ..+-.  ..    .++.|+.|.|+       .++.-+..  -.++..|+|..|.  +.+.++-...  .-++|++|||++
T Consensus       188 ~~s~~--~~----~l~~lK~L~l~~CGls~k~V~~~~~~--fPsl~~L~L~~N~--~~~~~~~~~~--i~~~L~~LdLs~  255 (505)
T KOG3207|consen  188 ISSNT--TL----LLSHLKQLVLNSCGLSWKDVQWILLT--FPSLEVLYLEANE--IILIKATSTK--ILQTLQELDLSN  255 (505)
T ss_pred             ccccc--hh----hhhhhheEEeccCCCCHHHHHHHHHh--CCcHHHhhhhccc--ccceecchhh--hhhHHhhccccC
Confidence            11101  00    22334455551       33333333  4555666666653  1112221111  114678888888


Q ss_pred             CCC
Q 015056          411 KPI  413 (414)
Q Consensus       411 N~i  413 (414)
                      |++
T Consensus       256 N~l  258 (505)
T KOG3207|consen  256 NNL  258 (505)
T ss_pred             Ccc
Confidence            765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.43  E-value=0.18  Score=56.34  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHhcC
Q 015056            4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCL   44 (414)
Q Consensus         4 ~P~L~~lC~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~~L   44 (414)
                      +|+|..+-.+.||..+..|.-.+ ..+.|+++--.+|-+.|
T Consensus         2 ~~sl~~~a~~~ia~~i~ng~y~~-~~~~ld~~sSn~i~~~l   41 (699)
T KOG3665|consen    2 VSSLADIACQKIAEYIQNGSYNN-LQYELDPKSSNKIYSEL   41 (699)
T ss_pred             CCchhhhhHHHHHHHHhcCCccc-cceecChhhhHHHHHHH
Confidence            47899999999999998765555 45777777776666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.21  E-value=0.067  Score=40.27  Aligned_cols=14  Identities=43%  Similarity=0.558  Sum_probs=10.0

Q ss_pred             CccEEeccCCCCCC
Q 015056          319 SLSILDLSGNSIGG  332 (414)
Q Consensus       319 ~L~~LdLs~n~Lt~  332 (414)
                      +|++|+|++|+|+.
T Consensus         2 ~L~~L~l~~n~l~~   15 (61)
T PF13855_consen    2 NLESLDLSNNKLTE   15 (61)
T ss_dssp             TESEEEETSSTESE
T ss_pred             cCcEEECCCCCCCc
Confidence            56777777777775

...

>PLN03150 hypothetical protein; Provisional

Probab=93.16  E-value=0.11  Score=56.94  Aligned_cols=79  Identities=24%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H----HHhhccccCCCceeEEEeecccCCchhHHH
Q 015056          319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H----IAASLGKFFGTSVQVLNIGAIGLGSSGFRV  392 (414)
Q Consensus       319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~----l~~agvk~L~c~Lq~L~L~~c~lg~~gcqa  392 (414)
                      .++.|+|++|.|++-        +...+....   +|++|+|+  .    +-..+..  -.+|+.|+|+.|.+...-=..
T Consensus       419 ~v~~L~L~~n~L~g~--------ip~~i~~L~---~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        419 FIDGLGLDNQGLRGF--------IPNDISKLR---HLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             EEEEEECCCCCcccc--------CCHHHhCCC---CCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCCCCCCCchH
Confidence            488999999999871        223454444   49999995  2    2223444  578999999999998543333


Q ss_pred             HHHHHhcCCCCcEEecCCCCCC
Q 015056          393 LQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       393 La~aL~~N~~L~~LdLs~N~i~  414 (414)
                          +..=++|++|||++|+++
T Consensus       486 ----l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        486 ----LGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             ----HhcCCCCCEEECcCCccc
Confidence                344578999999999874

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=92.80  E-value=0.22  Score=42.73  Aligned_cols=66  Identities=26%  Similarity=0.478  Sum_probs=51.1

Q ss_pred             cccCCChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC-CcCCCC--
Q 015056           28 YVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG-FTDQIE--  103 (414)
Q Consensus        28 ~~~~Lp~~~~~~v~~~Lpp~aL~~l~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~-~~~~~~--  103 (414)
                      .|.++|-+++.-|+.+.+|.-|..++..-|.     + .+-|                .-|+++++..-|. ...+.-  
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~-----l~~~td----------------eLW~~~i~rdFp~~~~~~~~~~   61 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPH-----LIEDTD----------------ELWKKLIKRDFPEESKRQKPKE   61 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCC-----cchhhH----------------HHHHHHHHhHCcChhhcccccc
Confidence            3678999999999999999999999977665     5 2222                3899999999997 222211  


Q ss_pred             CCchHHHHHHH
Q 015056          104 PVDWQQRYWEA  114 (414)
Q Consensus       104 ~~~Wkq~y~E~  114 (414)
                      +.+|+.+|..-
T Consensus        62 ~~~Wr~~Y~~~   72 (109)
T PF06881_consen   62 PESWRELYEKL   72 (109)
T ss_pred             cchHHHHHHHH
Confidence            67999999863

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.71  E-value=0.053  Score=60.88  Aligned_cols=121  Identities=25%  Similarity=0.170  Sum_probs=66.0

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC--cccccCCCCh---------hhhhhcCcccC
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG--WLSKYDRSGP---------LFSLGAGKSLQ  353 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~--wl~~~~c~~l---------s~aL~~nks~~  353 (414)
                      |.=.+.|.+|+|++||+.+      |..|++-+ .|.+|||++|+++-  -++...|. +         ...|.--.++.
T Consensus       183 Lqll~ale~LnLshNk~~~------v~~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lk  254 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTK------VDNLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLK  254 (1096)
T ss_pred             HHHHHHhhhhccchhhhhh------hHHHHhcc-cccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhh
Confidence            3334677888899998865      34566655 78888888888874  22222232 1         01111112334


Q ss_pred             CcceeehH-HHHhhcc--ccC--CCceeEEEeecccCC--chhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          354 SLRLLNLS-HIAASLG--KFF--GTSVQVLNIGAIGLG--SSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       354 ~L~~LnLs-~l~~agv--k~L--~c~Lq~L~L~~c~lg--~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|.+|||+ .+-..-.  .+|  =..|+.|+|.||-+-  +.==++.|.-|-.|..=+.+.|.+-.|
T Consensus       255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l  321 (1096)
T KOG1859|consen  255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKAL  321 (1096)
T ss_pred             hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceec
Confidence            48888884 1110000  111  245788888888652  222266677777665555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.38  E-value=0.014  Score=59.87  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=30.0

Q ss_pred             eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+++.+.+|++...+     ..+....++..|++..|+++
T Consensus       234 L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  234 LRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             HHHHhcccCcccccc-----ccccccccccccchhhcccc
Confidence            889999999998876     67788889999999999874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.23  E-value=0.087  Score=39.64  Aligned_cols=38  Identities=32%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +|+.|+|++|++..=...    .+...+ .|++|+|++|.|+.
T Consensus         2 ~L~~L~l~~n~l~~i~~~----~f~~l~-~L~~L~l~~N~l~~   39 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPD----SFSNLP-NLETLDLSNNNLTS   39 (61)
T ss_dssp             TESEEEETSSTESEECTT----TTTTGT-TESEEEETSSSESE
T ss_pred             cCcEEECCCCCCCccCHH----HHcCCC-CCCEeEccCCccCc
Confidence            577788888877533221    122233 77888888888876

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=91.91  E-value=0.059  Score=55.40  Aligned_cols=41  Identities=34%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +.+..+|++|+|++|++.+      ..+|-... .|+.|++++|.|+.
T Consensus       114 l~~~~~L~~L~ls~N~I~~------i~~l~~l~-~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITK------LEGLSTLT-LLKELNLSGNLISD  154 (414)
T ss_pred             hhhhhcchheecccccccc------ccchhhcc-chhhheeccCcchh
Confidence            4445555555555555543      12222222 25555555555554

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=90.35  E-value=0.73  Score=47.65  Aligned_cols=128  Identities=15%  Similarity=0.167  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056          213 VQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  291 (414)
Q Consensus       213 ~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL  291 (414)
                      +++.-.-+-.|-++|++.++..+. +.....+..+++|+..+    .++-|++-..+. .   ..+...+|.+|..|++|
T Consensus       186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt----~vk~Fsla~tr~-~---d~vA~a~a~ml~~n~sl  257 (353)
T KOG3735|consen  186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNT----HVKKFSLANTRS-S---DPVAFAIAEMLKENKSL  257 (353)
T ss_pred             HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCc----hhhhhhhhcccC-C---chhHHHHHHHHhhcchh
Confidence            455566777787789999887764 34444668899998887    366788886665 3   56777899999999999


Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS  351 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks  351 (414)
                      ++|++.+|.+...|...+..+|+... +|..|- -+|+.. |+++..-...+..|..|-+
T Consensus       258 ~slnvesnFItg~gi~a~~~al~~n~-tl~el~-~dnqrq-~lg~~vemeia~~leen~s  314 (353)
T KOG3735|consen  258 TSLNVESNFITGLGIMALLRALQSNK-SLTELK-NDNQRQ-VLGNAVEMEIALELEENAS  314 (353)
T ss_pred             hheeccccccccHHHHHHHHHHhccc-hhhHhh-hhhHHh-hcccHHHHHHHHHHHhccc
Confidence            99999999999999999999998888 666653 355555 5543333333445555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.93  E-value=0.25  Score=52.53  Aligned_cols=44  Identities=27%  Similarity=0.081  Sum_probs=31.1

Q ss_pred             HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+++.-+.|+.|+|+.|.|-|--..+     -... .||+||||+|.+-.
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~-----~~lv-~Lq~LnlS~NrFr~  472 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLNDLPEEM-----GSLV-RLQTLNLSFNRFRM  472 (565)
T ss_pred             HHHHhhhcceeeecccchhhhcchhh-----hhhh-hhheeccccccccc
Confidence            45666789999999999886533322     1112 58999999997764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=89.01  E-value=0.25  Score=49.61  Aligned_cols=107  Identities=25%  Similarity=0.260  Sum_probs=54.9

Q ss_pred             HHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056          283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-  361 (414)
Q Consensus       283 s~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-  361 (414)
                      .-+.....|+.|++++|++.+-..-.-     .++ .|+.|++++|+|+.    ....     ...   .+.|..|.++ 
T Consensus       157 ~~~~~l~~L~~L~l~~N~l~~l~~~~~-----~~~-~L~~L~ls~N~i~~----l~~~-----~~~---~~~L~~l~~~~  218 (394)
T COG4886         157 SPLRNLPNLKNLDLSFNDLSDLPKLLS-----NLS-NLNNLDLSGNKISD----LPPE-----IEL---LSALEELDLSN  218 (394)
T ss_pred             hhhhccccccccccCCchhhhhhhhhh-----hhh-hhhheeccCCcccc----Cchh-----hhh---hhhhhhhhhcC
Confidence            345556666666666666644332211     333 56666666666665    2121     000   0113333332 


Q ss_pred             ----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          362 ----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       362 ----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                          ..-....+  -.++..|.+..|.+++.     -..+..-..|+.|++++|.|+
T Consensus       219 N~~~~~~~~~~~--~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         219 NSIIELLSSLSN--LKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             Ccceecchhhhh--cccccccccCCceeeec-----cchhccccccceecccccccc
Confidence                11111223  45666666777777664     223333455999999999874

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.49  E-value=0.82  Score=48.55  Aligned_cols=148  Identities=13%  Similarity=0.237  Sum_probs=82.6

Q ss_pred             cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhc
Q 015056          208 RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS  287 (414)
Q Consensus       208 ~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lss  287 (414)
                      ..+.+.++....-+....++++|++++|.|..-  .      ..|    .+++.|.+..|.-.+    ..+.    .+  
T Consensus        35 ~~~~e~r~~a~~r~~~~~~l~~L~Is~c~L~sL--P------~LP----~sLtsL~Lsnc~nLt----sLP~----~L--   92 (426)
T PRK15386         35 ETSAEIRSEITPQIEEARASGRLYIKDCDIESL--P------VLP----NELTEITIENCNNLT----TLPG----SI--   92 (426)
T ss_pred             CCchHHHHHHHHHHHHhcCCCEEEeCCCCCccc--C------CCC----CCCcEEEccCCCCcc----cCCc----hh--
Confidence            445555655555555556899999999865321  0      122    358888888766533    2222    22  


Q ss_pred             CCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHH---H
Q 015056          288 GRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH---I  363 (414)
Q Consensus       288 n~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~---l  363 (414)
                      -.+|+.|+++++ .+.         .  -|+ +|++|+|+++.+..         + ..|-     ++|+.|.+..   .
T Consensus        93 P~nLe~L~Ls~Cs~L~---------s--LP~-sLe~L~L~~n~~~~---------L-~~LP-----ssLk~L~I~~~n~~  145 (426)
T PRK15386         93 PEGLEKLTVCHCPEIS---------G--LPE-SVRSLEIKGSATDS---------I-KNVP-----NGLTSLSINSYNPE  145 (426)
T ss_pred             hhhhhheEccCccccc---------c--ccc-ccceEEeCCCCCcc---------c-ccCc-----chHhheeccccccc
Confidence            257899999988 442         1  144 89999988766543         1 1121     1244555410   0


Q ss_pred             -HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056          364 -AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       364 -~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                       ....-..|=.+|+.|++++|....     +-..|.  .+|++|+++.|
T Consensus       146 ~~~~lp~~LPsSLk~L~Is~c~~i~-----LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        146 NQARIDNLISPSLKTLSLTGCSNII-----LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccccccCCcccEEEecCCCccc-----Cccccc--ccCcEEEeccc
Confidence             000111234678888888777542     111122  46777777765

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.35  E-value=0.47  Score=48.96  Aligned_cols=44  Identities=25%  Similarity=0.169  Sum_probs=19.8

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ++++.++.|+|++|++.|..  -+..-|.+.| .|++|.||+|.+.+
T Consensus        68 ~~~~~v~elDL~~N~iSdWs--eI~~ile~lP-~l~~LNls~N~L~s  111 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWS--EIGAILEQLP-ALTTLNLSCNSLSS  111 (418)
T ss_pred             HHhhhhhhhhcccchhccHH--HHHHHHhcCc-cceEeeccCCcCCC
Confidence            33445555555555554432  1222333444 45555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.21  E-value=0.43  Score=50.84  Aligned_cols=85  Identities=29%  Similarity=0.404  Sum_probs=57.9

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HH
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HI  363 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l  363 (414)
                      .+|+.|++|.|.+     |.+=.-+-.+. .++++-.++|+|++    ..-+    .+   +++.+|+.|||+     .+
T Consensus       458 v~Lq~LnlS~NrF-----r~lP~~~y~lq-~lEtllas~nqi~~----vd~~----~l---~nm~nL~tLDL~nNdlq~I  520 (565)
T KOG0472|consen  458 VRLQTLNLSFNRF-----RMLPECLYELQ-TLETLLASNNQIGS----VDPS----GL---KNMRNLTTLDLQNNDLQQI  520 (565)
T ss_pred             hhhheeccccccc-----ccchHHHhhHH-HHHHHHhccccccc----cChH----Hh---hhhhhcceeccCCCchhhC
Confidence            3499999999976     33223333333 77888889999997    3332    23   566679999994     33


Q ss_pred             HhhccccCCCceeEEEeecccCCchhHHH
Q 015056          364 AASLGKFFGTSVQVLNIGAIGLGSSGFRV  392 (414)
Q Consensus       364 ~~agvk~L~c~Lq~L~L~~c~lg~~gcqa  392 (414)
                      --.+++  -++|+.|+|+||-|--.-.|.
T Consensus       521 Pp~Lgn--mtnL~hLeL~gNpfr~Pr~~i  547 (565)
T KOG0472|consen  521 PPILGN--MTNLRHLELDGNPFRQPRHQI  547 (565)
T ss_pred             Chhhcc--ccceeEEEecCCccCCCHHHH
Confidence            333556  788999999999887544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.44  E-value=0.61  Score=48.16  Aligned_cols=168  Identities=19%  Similarity=0.082  Sum_probs=108.6

Q ss_pred             cccchhhhchhccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCcccccccccee
Q 015056          184 ALCVEETCQLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENL  262 (414)
Q Consensus       184 ~l~~~~~~~l~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~l  262 (414)
                      +=+++++.. +..-+|.+|+|-.. .+-...+.+..    +++-+|+|+++.|++++--.+.=|..=-++.         
T Consensus       109 L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~----~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~---------  174 (418)
T KOG2982|consen  109 LSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLD----DLPKVTELHMSDNSLRQLNLDDNCIEDWSTE---------  174 (418)
T ss_pred             CCCccccCc-ccccceEEEEEcCCCCChhhhhhhhh----cchhhhhhhhccchhhhhccccccccccchh---------
Confidence            334544333 45678888888777 66666555444    4489999999999887766554444434444         


Q ss_pred             eccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCCh
Q 015056          263 SIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGP  342 (414)
Q Consensus       263 sl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~l  342 (414)
                       +.|=.+ .+|+.+-|.+.-..-.--+++..+-+.++++.++-+.-   +---++ .+.-|.|+-|+|++|++      +
T Consensus       175 -v~tlh~-~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p-~~~~LnL~~~~idswas------v  242 (418)
T KOG2982|consen  175 -VLTLHQ-LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEK---GSEPFP-SLSCLNLGANNIDSWAS------V  242 (418)
T ss_pred             -hhhhhc-CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcc---cCCCCC-cchhhhhcccccccHHH------H
Confidence             233344 55666788888888888899999999999998876643   222233 55678899999999885      2


Q ss_pred             hhhhhcCcccCCcceeehH--HHHhhccccC--------CCceeEEEee
Q 015056          343 LFSLGAGKSLQSLRLLNLS--HIAASLGKFF--------GTSVQVLNIG  381 (414)
Q Consensus       343 s~aL~~nks~~~L~~LnLs--~l~~agvk~L--------~c~Lq~L~L~  381 (414)
                       .+|..--   .|+-|-++  ++-|++-..-        =+++|.||=+
T Consensus       243 -D~Ln~f~---~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  243 -DALNGFP---QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             -HHHcCCc---hhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence             4553333   35555554  5555544411        3556666643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=82.82  E-value=0.11  Score=50.03  Aligned_cols=76  Identities=26%  Similarity=0.428  Sum_probs=48.1

Q ss_pred             CCcccEEEccCCCCC---chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          288 GRSLCSLKLRHCHLD---RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~---d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      ...++.|.||+||+.   +.-|.+        . +|+.|.+++|+|++         +.-.++.   ++.|++||++  .
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l--------~-nlevln~~nnqie~---------lp~~iss---l~klr~lnvgmnr   90 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAEL--------K-NLEVLNLSNNQIEE---------LPTSISS---LPKLRILNVGMNR   90 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHh--------h-hhhhhhcccchhhh---------cChhhhh---chhhhheecchhh
Confidence            356788999999983   222222        2 88999999999998         3334433   3459999995  1


Q ss_pred             H---HhhccccCCCceeEEEeecccCC
Q 015056          363 I---AASLGKFFGTSVQVLNIGAIGLG  386 (414)
Q Consensus       363 l---~~agvk~L~c~Lq~L~L~~c~lg  386 (414)
                      +   -...+.  -.-|+.|||..|.+.
T Consensus        91 l~~lprgfgs--~p~levldltynnl~  115 (264)
T KOG0617|consen   91 LNILPRGFGS--FPALEVLDLTYNNLN  115 (264)
T ss_pred             hhcCccccCC--Cchhhhhhccccccc
Confidence            1   111111  345677777777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=82.57  E-value=0.59  Score=49.62  Aligned_cols=58  Identities=29%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeeh
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL  360 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnL  360 (414)
                      ...++..|.|.+|++.-     +-.+....-.+|.+|+|.+|+||.    .+-    .++....+   |+.|||
T Consensus       296 ~~a~l~eL~L~~N~l~~-----v~~~~f~~ls~L~tL~L~~N~it~----~~~----~aF~~~~~---l~~l~l  353 (498)
T KOG4237|consen  296 GAAELQELYLTRNKLEF-----VSSGMFQGLSGLKTLSLYDNQITT----VAP----GAFQTLFS---LSTLNL  353 (498)
T ss_pred             chhhhhhhhcCcchHHH-----HHHHhhhccccceeeeecCCeeEE----Eec----ccccccce---eeeeeh
Confidence            34567888999999832     233334444499999999999996    222    25544454   888998

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=80.90  E-value=3  Score=43.32  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             HhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEec
Q 015056          246 CRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL  325 (414)
Q Consensus       246 C~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdL  325 (414)
                      ++.|..-+.-+-+|+..-++.-.   +-|.+--.+++.+|..|...+.+.|.+..-+|--|..+...|.-.. +|++|.+
T Consensus       187 e~~leri~~nd~~l~evnlnn~~---~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~-sl~slnv  262 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIR---RIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENK-SLTSLNV  262 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccc---cCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcc-hhhheec
Confidence            44444433333455555555221   2235666789999999999999999999999999999999999999 9999999


Q ss_pred             cCCCCCCcccccCCCCh--hhhhhcCcccCCcceeehHHHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCC
Q 015056          326 SGNSIGGWLSKYDRSGP--LFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKL  403 (414)
Q Consensus       326 s~n~Lt~wl~~~~c~~l--s~aL~~nks~~~L~~LnLs~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L  403 (414)
                      +.|-||+      -+.+  -++|..|++   |+.|---           -..|       .+|..-.+.+|.+|..|.+|
T Consensus       263 esnFItg------~gi~a~~~al~~n~t---l~el~~d-----------nqrq-------~lg~~vemeia~~leen~sl  315 (353)
T KOG3735|consen  263 ESNFITG------LGIMALLRALQSNKS---LTELKND-----------NQRQ-------VLGNAVEMEIALELEENASL  315 (353)
T ss_pred             ccccccc------HHHHHHHHHHhccch---hhHhhhh-----------hHHh-------hcccHHHHHHHHHHHhcccc
Confidence            9999999      4433  247777776   7766551           0001       23445556666666666655


Q ss_pred             c
Q 015056          404 V  404 (414)
Q Consensus       404 ~  404 (414)
                      -
T Consensus       316 l  316 (353)
T KOG3735|consen  316 L  316 (353)
T ss_pred             c
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 25/231 (10%)

Query: 193 LLRESKLQSLVLRWIRFEEH-VQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS 251
           LL+  KL ++ L    F     + L   L +++  L  L   +  L P     I R+L  
Sbjct: 90  LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQE 148

Query: 252 KRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVF 310
                       +       N   +  + E      S R L ++K+    +  +    + 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 311 SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLS-------- 361
              L     L +LDL  N+               +L    KS  +LR L L+        
Sbjct: 209 LEGLAYCQELKVLDLQDNTFT------HLGSS--ALAIALKSWPNLRELGLNDCLLSARG 260

Query: 362 --HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV---TKELKLVNIN 407
              +  +  K     +Q L +    +     R L+  +     +L  + +N
Sbjct: 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 191 CQLLRESK-LQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247
            +  +  + L ++ +    IR E     L + L      L  L+      +      +  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAI 238

Query: 248 SLCSKRKRIHKIENLSIDISSFIENCP--SSVVVELVSFLSSG--RSLCSLKLRHCHLDR 303
           +L S       +  L ++      +C   +     +V   S      L +L+L++  ++ 
Sbjct: 239 ALKSWPN----LRELGLN------DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 304 DFGRMVFSSLLEASSSLSILDLSGNSIG 331
           D  R + + + E    L  L+L+GN   
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 40/247 (16%), Positives = 73/247 (29%), Gaps = 37/247 (14%)

Query: 181 LQNALCVEETCQLLRE-----SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLH 234
           +   L +      + E       + SL L            L +       ++ SL    
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 235 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSG-RSLC 292
             L     + + + L +    +  + NLS        N  S     ELV  L++   ++ 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSL-NLS-------GNFLSYKSSDELVKTLAAIPFTIT 112

Query: 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352
            L L               +     +S++ L+L GN +G       +S            
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG------IKSSDELIQILAAIP 166

Query: 353 QSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELK 402
            ++  LNL            +A  L      SV  L++ A  LG   +  L         
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFL-ASIPASVTSLDLSANLLGLKSYAELAYI----FS 221

Query: 403 LVNINIR 409
            +  ++ 
Sbjct: 222 SIPNHVV 228

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 31/218 (14%)

Query: 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255
             +  L L W  F  +      +       ++ SL      L     + + + L +    
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 256 IHKIENLSIDISSFIENCP--SSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSS 312
           ++ + NL              S    EL  FL+S   S+ SL L    L       +   
Sbjct: 169 VNSL-NLR--------GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

Query: 313 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHI--------- 363
                + +  L+L  N +         S     L    SL+ L+ + L +          
Sbjct: 220 FSSIPNHVVSLNLCLNCLH------GPSLENLKL-LKDSLKHLQTVYLDYDIVKNMSKEQ 272

Query: 364 AASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK 399
             +LG  F     + +++     +  S    + + + +
Sbjct: 273 CKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 16/167 (9%), Positives = 44/167 (26%), Gaps = 12/167 (7%)

Query: 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255
           + + SL L       +    L  +       + SL      L    +E +          
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK----DS 251

Query: 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 315
           +  ++ + +D    ++N        L +   + + +  +      +       + + + E
Sbjct: 252 LKHLQTVYLD-YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310

Query: 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH 362
            S    +  L    +              ++        LR    + 
Sbjct: 311 LSGKADVPSLLNQCL------IFAQKHQTNIEDLNIPDELRESIQTC 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 41/231 (17%), Positives = 75/231 (32%), Gaps = 31/231 (13%)

Query: 177 RCLRLQNALCVEETCQLLRE--SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFL 233
           + L +Q     +     L     + Q + L      E   + +   L  N   LA L   
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLR 64

Query: 234 HCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV-VVELVSFLSSGRSLC 292
             +L    V  + + L +   +I K+ +L          C +      L S L +  +L 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKL-SLQ-------NCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL 352
            L L    L     +++   LL+    L  L L   S+         S    +    ++ 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS------AASCEPLAS-VLRAK 169

Query: 353 QSLRLLNLSH----------IAASLGKFFGTSVQVLNIGAIGLGSSGFRVL 393
              + L +S+          +   L K     ++ L + + G+ S   R L
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGL-KDSPCQLEALKLESCGVTSDNCRDL 219

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 35/218 (16%), Positives = 74/218 (33%), Gaps = 33/218 (15%)

Query: 191 CQLLRE--SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247
           C+ L +   +L+ L L +        + L  +L         L   +  ++ + V  +C+
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQ 192

Query: 248 SLCSKRKRIHKIENLSIDISSFIENC--PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305
            L     ++  ++         +E+C   S    +L   ++S  SL  L L    L    
Sbjct: 193 GLKDSPCQLEALK---------LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH--- 362
              +   LL  SS L  L +    I        +          ++ +SL+ L+L+    
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGIT------AKGCGDLCR-VLRAKESLKELSLAGNEL 296

Query: 363 -------IAASLGKFFGTSVQVLNIGAIGLGSSGFRVL 393
                  +  +L    G  ++ L + +    ++     
Sbjct: 297 GDEGARLLCETL-LEPGCQLESLWVKSCSFTAACCSHF 333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 27/222 (12%)

Query: 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR 255
           S+L++L +       +    LC++L     +L  L     +L       +C +L      
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPGC- 313

Query: 256 IHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE 315
             ++E+L +   SF   C         S L+  R L  L++ +  L+    R +   L +
Sbjct: 314 --QLESLWVKSCSFTAAC----CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH----------IAA 365
             S L +L L+   +       D S    +     +  SLR L+LS+          +  
Sbjct: 368 PGSVLRVLWLADCDVS------DSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNIN 407
           S+ +  G  ++ L +  I         LQ     +  L  I+
Sbjct: 421 SV-RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 191 CQLLRE--SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247
           C+ L E   +L+SL ++   F          +L QN   L  L+  + +L  + V  +C+
Sbjct: 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQ 363

Query: 248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR 307
            L         +  L +      ++        L + L +  SL  L L +  L  D G 
Sbjct: 364 GLGQPGS---VLRVLWLADCDVSDSS----CSSLAATLLANHSLRELDLSNNCLG-DAGI 415

Query: 308 MVFSSLLEAS-SSLSILDLSGNSIG 331
           +     +      L  L L      
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWS 440

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 43/248 (17%), Positives = 85/248 (34%), Gaps = 37/248 (14%)

Query: 164 KLSYHCQQFGHYARCLRLQNALCVEETCQLLRE--SKLQSLVLRWIRF-EEHVQALCKLL 220
           KL    +Q    +  L         +  +   E  S L+ L L  +R        +  +L
Sbjct: 37  KLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVL 96

Query: 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE 280
                 L  +    C+L P+ +  +       RK         + +     N       +
Sbjct: 97  GSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK---------LGLQ---LNSLGPEACK 144

Query: 281 LVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD 338
            +    L     + +L+L +  L    G  V    L  ++S++ L L    +G      D
Sbjct: 145 DLRDLLLHDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLG------D 197

Query: 339 RSGPLFSLGAGKSLQSLRLLNLSH----------IAASLGKFFGTSVQVLNIGAIGLGSS 388
               L +       + L+ LN+++          +A +  +    S+++L++    L S 
Sbjct: 198 EGLELLAA-QLDRNRQLQELNVAYNGAGDTAALALARAARE--HPSLELLHLYFNELSSE 254

Query: 389 GFRVLQDG 396
           G +VL+D 
Sbjct: 255 GRQVLRDL 262

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 18/153 (11%)

Query: 191 CQLLRE-SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRS 248
              L    +LQ L + +    +    AL +   ++  +L  L     +LS    + +   
Sbjct: 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-SLELLHLYFNELSSEGRQVLRDL 262

Query: 249 L----CSKRKRIHKIENLSID------ISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298
                   R  +   E  ++       +S    N  S       + +     L    L  
Sbjct: 263 GGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW----DRARVQRHLELLLRDLED 318

Query: 299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331
                       + LL     +  L     S G
Sbjct: 319 SRG-ATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 42/307 (13%), Positives = 83/307 (27%), Gaps = 80/307 (26%)

Query: 31  ELPADLFDILLTCLPPLALQK--LQTKM---PFRDGDDCGSPDYCFENGRKRGRYGNFNT 85
            L     D     LP   L     +  +     RDG                  + N+  
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---------------TWDNWKH 349

Query: 86  VWKKLFKTRWSGFTDQIEPVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTI 145
           V      T      + +EP ++++ +              L V P         +I   +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD------------RLSVFP------PSAHIPTIL 391

Query: 146 L-----NYIGYEQQ--MNHLACDYS---------KLSYHCQQFGHYARCLRLQ--NALCV 187
           L     + I  +    +N L   YS          +S          +       +   V
Sbjct: 392 LSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 188 EETCQLLRESKLQSLVLRWIR------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSF 241
           +    + +      L+  ++          H++      I++ E +     +   L   F
Sbjct: 451 DHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKN-----IEHPERMTLFRMVF--LDFRF 502

Query: 242 VEGICRSLCSKRKRIHKIENLSIDI---SSFI-ENCP--SSVVVELVSFLSSGRSLCSLK 295
           +E   R   +       I N    +     +I +N P    +V  ++ FL          
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL--- 559

Query: 296 LRHCHLD 302
           +   + D
Sbjct: 560 ICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 9e-07
 Identities = 57/366 (15%), Positives = 115/366 (31%), Gaps = 104/366 (28%)

Query: 20  LLGDDVIPYVYELPAD------LFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCF-- 71
           +L  + I ++            LF  LL+       Q+   +    +       +Y F  
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEEVLR---INYKFLM 95

Query: 72  ------ENGR---------KRGRYGNFNTVWKKLFKTRWSGFTD------QIEPVDWQQR 110
                 +            +R R  N N V+ K   +R   +        ++ P      
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--- 152

Query: 111 YWEAHVQG-------CLDEAAELV----VLPSFRGLISDINIS-----DTILNYIGYEQQ 154
                + G        +  A ++     V       I  +N+      +T+L      + 
Sbjct: 153 ---VLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EM 201

Query: 155 MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQS--LVLRWIRFEEH 212
           +  L     ++  +      ++  ++L+      E  +LL+    ++  LVL  ++  + 
Sbjct: 202 LQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 213 VQAL---CKLLI-----QNSETLASLEFLHCKL---SPSFVEGICRSLCSKRKRIHKIEN 261
             A    CK+L+     Q ++ L++    H  L   S +      +SL  K         
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------Y 310

Query: 262 LSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR-DFGRMVFSSLLEA--SS 318
           L           P  V+    +      S+ +  +R   L   D  + V    L     S
Sbjct: 311 LDCRPQDL----PREVL--TTNPRRL--SIIAESIRD-GLATWDNWKHVNCDKLTTIIES 361

Query: 319 SLSILD 324
           SL++L+
Sbjct: 362 SLNVLE 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 68/468 (14%), Positives = 132/468 (28%), Gaps = 145/468 (30%)

Query: 9   SLAALAVKRELLLG--DDVIPYV----YELPADLFDILLTCLPPLALQKLQTKMPFRDGD 62
            +A        +    D  I ++       P  + ++L         QKL  ++   D +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML---------QKLLYQI---DPN 212

Query: 63  DCGSPDYC------FENGRKRGR-------YGN----FNTVW------------KKLFKT 93
                D+         + +   R       Y N       V             K L  T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 94  RWSGFTDQIEPVDWQQRYWEAHVQG-CLDEAAELVV---------LPSFRGLISDIN--- 140
           R+   TD +          + H      DE   L++         LP     +   N   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRR 329

Query: 141 ---ISDTILNYIGYEQQMNHLACD----YSKLSYHCQQFGHYARCLRLQNALCVEETCQL 193
              I+++I + +       H+ CD      + S +  +   Y +           +   +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---------DRLSV 380

Query: 194 LRES---KLQSLVLRWIRFEEH-----VQALC-KLLI--QNSETLASLEFLHCKLSPSFV 242
              S       L L W    +      V  L    L+  Q  E+  S+  ++ +L     
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL----- 435

Query: 243 EGICRSLCSKRKRIHK--IENLSIDISSFIENCPSSVVVE-LVSFLSSGRSLCSLKLRHC 299
               +        +H+  +++ +I  +   ++     + +   S +  G  L    + H 
Sbjct: 436 ----KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHL--KNIEHP 487

Query: 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLFSLGAG--KSLQSLR 356
                F RMVF            LD        +L  K       ++       +LQ L+
Sbjct: 488 ERMTLF-RMVF------------LDFR------FLEQKIRHDSTAWNASGSILNTLQQLK 528

Query: 357 LLNLSHIA----------ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQ 394
                +I            ++  F      +  I    + S    +L+
Sbjct: 529 FYK-PYICDNDPKYERLVNAILDF------LPKIEENLICSKYTDLLR 569

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 14/155 (9%)

Query: 183 NALCVEETCQLLRE--SKLQSLVLRWIRF--EEHVQALCKLLIQNSETLASLEFLHCKLS 238
           N+  VEET + ++     L+ + L  I       ++A  + L  N+  +     +  + +
Sbjct: 20  NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSN 78

Query: 239 PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH 298
                 +   L    K  + +++L+++ S+FI     S ++ LV  L S  SL  L++ +
Sbjct: 79  DPVAFALAEML----KVNNTLKSLNVE-SNFISG---SGILALVEALQSNTSLIELRIDN 130

Query: 299 CHLD-RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332
                 +   M  +++LE +++L          G 
Sbjct: 131 QSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 30/190 (15%), Positives = 65/190 (34%), Gaps = 24/190 (12%)

Query: 197 SKLQSLVLRW--IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254
            KLQ+L LR   +     + ++  +   +   L +L  ++   +   +            
Sbjct: 362 EKLQTLDLRDNALTTIHFIPSIPDI-FLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 255 RIHKIENL-SIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSS 312
            + ++ +L  + ++     +C            S   SL  L L    L   +   +   
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGD------QTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 313 LLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH--IAASLGKF 370
           + E  S L +L L+ N +                G    L +LR L+L+   +       
Sbjct: 475 VFEGLSHLQVLYLNHNYLNS-----------LPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 371 FGTSVQVLNI 380
              ++++L+I
Sbjct: 524 LPANLEILDI 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 25/147 (17%)

Query: 220 LIQNSETLASLEFLHCKLS--PSFVEGICRSLCSKRKRIHKIENL-SIDISS-FIENCPS 275
               +E + +L F H KL   P+  +               +  + +ID S   I +   
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFD------------AKSVSVMSAIDFSYNEIGSVDG 419

Query: 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS 335
                L      G ++ S+ L +  + +         L    S LS ++L GN +   + 
Sbjct: 420 KNFDPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTE-IP 473

Query: 336 KYDRSGPLFSLGAGKSLQSLRLLNLSH 362
           K        +     +   L  ++L  
Sbjct: 474 KNSLKDENENFK---NTYLLTSIDLRF 497

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRI 256
           S ++ L LR               +   E  + ++ L  + S    +     L    + I
Sbjct: 196 SSVRYLELRDTNLAR----FQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYI 250

Query: 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA 316
            ++  +  D  +   N            +S    + ++ +R  H+ + +     S++   
Sbjct: 251 LELSEVEFDDCTL--NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

Query: 317 SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH-----IAASLGKFF 371
              +  + +  + +            L      + L+SL  L+LS               
Sbjct: 309 LEKVKRITVENSKV-----------FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 372 G--TSVQVLN 379
           G   S+Q L 
Sbjct: 358 GAWPSLQTLV 367

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 268 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG 327
           + ++      +  L+    + + +    L +  +  D        L+E S SL +L++  
Sbjct: 49  NNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVES 107

Query: 328 NSIGG----WLSKYDRSGPLFSLGAGKSLQSLRLLNLSH 362
           N +       L +        S    +S+   +  N   
Sbjct: 108 NFLTPELLARLLR--------STLVTQSIVEFKADNQRQ 138

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 29/192 (15%), Positives = 58/192 (30%), Gaps = 22/192 (11%)

Query: 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL 285
            L  L       S + ++   ++L      +H++          +E    S++       
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLH--VHRLILGEFKDERNLEIFEPSIM------- 255

Query: 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI--------GGWLSKY 337
                LC + +    L                +++S + L+G SI               
Sbjct: 256 ---EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSL 312

Query: 338 DRSGPLFSLGAGKSLQSLRLLNLSH--IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395
                         L  L+ L L+    + S  K    S+  L++    L  SG     D
Sbjct: 313 SIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 396 GVTKELKLVNIN 407
             T  L+ ++++
Sbjct: 373 LGTNSLRHLDLS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.01
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.99
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.99
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.88
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.66
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.66
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.65
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.57
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.54
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.47
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.42
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.4
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.34
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.3
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.3
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.3
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.25
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.25
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.22
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.21
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.03
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.99
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.9
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.9
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.82
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	91.7
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	88.92
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	84.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	82.63

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.4e-20  Score=184.43  Aligned_cols=204  Identities=19%  Similarity=0.202  Sum_probs=175.6

Q ss_pred             cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056          196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  274 (414)
Q Consensus       196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~  274 (414)
                      .++|++|.++++ .++.++..+...+.... +|++|+|++|.+.+.++..++..+.++.   ..+++|.+..|.+ +   
T Consensus       198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~---~~L~~L~L~~n~l-~---  269 (461)
T 1z7x_W          198 PCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPS---SRLRTLWIWECGI-T---  269 (461)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-C---
T ss_pred             CCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCC---CCceEEECcCCCC-C---
Confidence            358999999988 77777778888887775 9999999999999999999999998766   6799999999988 6   


Q ss_pred             cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      ......++.++..+++|++|+|++|++.++++..+...+.++.+.|++|+|++|.|++    ..+..++.++..+++   
T Consensus       270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~---  342 (461)
T 1z7x_W          270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVLAQNRF---  342 (461)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG----GGHHHHHHHHHHCSS---
T ss_pred             HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch----HHHHHHHHHHhhCCC---
Confidence            5566679999999999999999999999999999999999998899999999999998    445556667766666   


Q ss_pred             cceeehH--HHHhhc----cccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          355 LRLLNLS--HIAASL----GKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       355 L~~LnLs--~l~~ag----vk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|+|+  .+.+.+    ++.+   .++|++|+|++|.+++.|+.+++.++..+++|++||+++|+|+
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            9999995  333322    2222   4699999999999999999999999999999999999999985

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=187.22  Aligned_cols=188  Identities=18%  Similarity=0.262  Sum_probs=155.5

Q ss_pred             eeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHH
Q 015056          205 RWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSF  284 (414)
Q Consensus       205 ~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~  284 (414)
                      .+|..+..-..+.....   ++|++|+|++|.++..++..+...|....   ..++.|.+..+.+ +   ......++.+
T Consensus        55 ~~cl~e~~~~~l~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~---~~L~~L~Ls~n~l-~---~~~~~~l~~~  124 (372)
T 3un9_A           55 LFFHYEFQNQRFSAEVL---SSLRQLNLAGVRMTPVKCTVVAAVLGSGR---HALDEVNLASCQL-D---PAGLRTLLPV  124 (372)
T ss_dssp             HHHHHHHHTHHHHHHHH---TTCCEEECTTSCCCHHHHHHHHHHHSSCS---SCEEEEECTTCCC-C---HHHHHHTHHH
T ss_pred             HHHHHHhcCHHHHHHHH---hhCCEEEecCCCCCHHHHHHHHHHHhhCC---CCceEEEecCCCC-C---HHHHHHHHHH
Confidence            34444444444444433   46899999999999999999999998765   6799999999987 5   4556667766


Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      |.   +|++|+|++|.+++.+++.|+.+|.++.|+|++|+|++|.|++    ..+..++.+|..+.+   |++|||+  .
T Consensus       125 L~---~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~~~~---L~~L~Ls~N~  194 (372)
T 3un9_A          125 FL---RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA----AGVAVLMEGLAGNTS---VTHLSLLHTG  194 (372)
T ss_dssp             HH---TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH----HHHHHHHHHHHTCSS---CCEEECTTSS
T ss_pred             HH---hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh----HHHHHHHHHHhcCCC---cCEEeCCCCC
Confidence            66   7899999999999999999999999988999999999999998    556667778877766   9999995  3


Q ss_pred             HH--------hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          363 IA--------ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       363 l~--------~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +.        +++..  .++|++|+|++|.+|+.|+.+++.+|..|++|++|||++|.|+
T Consensus       195 l~~~g~~~L~~~L~~--~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          195 LGDEGLELLAAQLDR--NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CHHHHHHHHHHHGGG--CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCcHHHHHHHHHHhc--CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            33        44444  7899999999999999999999999999999999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=1.8e-20  Score=183.71  Aligned_cols=201  Identities=17%  Similarity=0.181  Sum_probs=173.0

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|++|.|+++ .++.++..+..++.... +|++|+|++|.+.+.++..+++++..+.   +.+++|.+..|.+ +   ..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l-~---~~  157 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQ---CRLEKLQLEYCSL-S---AA  157 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-B---GG
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCC---CcceEEECCCCCC-C---HH
Confidence            6999999998 78888888888887775 9999999999999999999999998877   7899999999988 6   67


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  356 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~  356 (414)
                      .+..++.++..+++|++|+|++|++.+.++..+..++.++.+.|++|+|++|.|++    .....++.++....+   |+
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~---L~  230 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS----DNCRDLCGIVASKAS---LR  230 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT----THHHHHHHHHHHCTT---CC
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH----HHHHHHHHHHHhCCC---cc
Confidence            78889999999999999999999999999999999999988899999999999998    334445566765555   99


Q ss_pred             eeehH--HHHhhcc----ccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          357 LLNLS--HIAASLG----KFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       357 ~LnLs--~l~~agv----k~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|+|+  .+.+.++    ..+   .++|++|+|++|.+++.|+.+++.++..+++|++||+++|.|
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence            99995  3333222    111   578999999999999999999999999999999999999987

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=9.3e-20  Score=176.49  Aligned_cols=202  Identities=19%  Similarity=0.160  Sum_probs=153.1

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|++|.|++. .++.....++..+..+.++|++|+|++|.+...+...+++++....   ..++.|.+..+.+ +   ..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~---~~L~~L~Ls~N~l-~---~~  124 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP---FTITVLDLGWNDF-S---SK  124 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC---TTCCEEECCSSCG-G---GS
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC---CCccEEECcCCcC-C---cH
Confidence            6888888887 6666677788887777458888888888888888888888877653   4588888888887 6   56


Q ss_pred             cHHHHHHHHhc-CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          277 VVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       277 ~~~~Las~Lss-n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      ....++.++.. +++|++|+|++|.+.++++..++.++.+.+++|++|+|++|.|++    .....++.++..+.  .+|
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~--~~L  198 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS----KNCAELAKFLASIP--ASV  198 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHTSC--TTC
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch----hhHHHHHHHHHhCC--CCC
Confidence            67778888877 578888888888888888888888888887888888888888887    33444445665552  138


Q ss_pred             ceeehH--HHHhhccc----cC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          356 RLLNLS--HIAASLGK----FF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       356 ~~LnLs--~l~~agvk----~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      ++|||+  .+.+.++.    .+   .++|++|+|++|.+++.|.++++.++..+++|++|++++|.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            888885  33332222    11   34788888888888888888888888888888888888886

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=1.9e-20  Score=181.41  Aligned_cols=204  Identities=17%  Similarity=0.111  Sum_probs=118.6

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      ..|+.|.|++. .++.....++..+..++++|++|+|++|.++..++..++.++..-.   ..+++|.+..+.+ +   .
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~---~~L~~L~Ls~N~l-~---~  152 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP---ASITSLNLRGNDL-G---I  152 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC---TTCCEEECTTSCG-G---G
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC---CceeEEEccCCcC-C---H
Confidence            46666666666 5555555666666555346666666666666666666666665521   2366666666665 4   4


Q ss_pred             ccHHHHHHHHhcCC-cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          276 SVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       276 ~~~~~Las~Lssn~-sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      .....++.++.... +|++|+|++|++.+.++..+...|...+++|++|||++|.|++    ..+..++.++....  .+
T Consensus       153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~--~~  226 (362)
T 3goz_A          153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIP--NH  226 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSC--TT
T ss_pred             HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCC--CC
Confidence            45556666666554 6666666666666666666666666654566666666666666    22333444443321  13


Q ss_pred             cceeehH--HHHhhcc----ccC--CCceeEEEeeccc---CCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          355 LRLLNLS--HIAASLG----KFF--GTSVQVLNIGAIG---LGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       355 L~~LnLs--~l~~agv----k~L--~c~Lq~L~L~~c~---lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |++|||+  .+.+.++    ..+  ..+|++|+|++|.   +++.++.++++++..+++|+.||+++|+|
T Consensus       227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            6666663  2221111    111  4556666666666   66666666666666666666666666665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=2e-18  Score=167.46  Aligned_cols=205  Identities=18%  Similarity=0.187  Sum_probs=145.0

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCcccc-----ccccceeeccccccc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKR-----IHKIENLSIDISSFI  270 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~-----~C~lq~lsl~tc~~~  270 (414)
                      .+|++|.|++. .+..+...+...+.... +|++|+|++|.++..++..+..++..-...     ...+++|.+..+.+ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l-  171 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-  171 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCC-CCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC-
Confidence            47777777777 66666666777776664 888888888888777777777766442000     02477888887776 


Q ss_pred             cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHH-HhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcC
Q 015056          271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFS-SLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG  349 (414)
Q Consensus       271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~-~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~n  349 (414)
                      +   ....+.++.++..+++|+.|+|++|.+.+.|+..++. .+.+.+ +|++|+|++|.|++    .....++.++..+
T Consensus       172 ~---~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~----~g~~~l~~~l~~~  243 (386)
T 2ca6_A          172 E---NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTH----LGSSALAIALKSW  243 (386)
T ss_dssp             T---GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHH----HHHHHHHHHGGGC
T ss_pred             C---cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCc----HHHHHHHHHHccC
Confidence            4   4566677788888888888888888888888888888 666666 88888888888875    2223344556555


Q ss_pred             cccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCCC
Q 015056          350 KSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPIS  414 (414)
Q Consensus       350 ks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i~  414 (414)
                      .+   |++|+|+          .++.++...-..+|++|+|++|.+++.|++.+..++..| ++|++|++++|+|+
T Consensus       244 ~~---L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          244 PN---LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             TT---CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CC---cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            54   8888884          123333111157788888888888888888888888665 88888888888874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.77  E-value=6.3e-19  Score=163.88  Aligned_cols=131  Identities=15%  Similarity=0.188  Sum_probs=116.7

Q ss_pred             CCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056          273 CPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS  351 (414)
Q Consensus       273 ~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks  351 (414)
                      |+..+-+.|+.++..+.+|++|+|++| .++|+|++.|+.+|.. .+.|++|+|++|+|++    ..+..+|.+|..|++
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~-N~~L~~L~L~~n~igd----~ga~alA~aL~~N~t   99 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISD----SEARGLIELIETSPS   99 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT-CSCCCEEECTTSCCBH----HHHTTHHHHHHHCSS
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhh-CCCcCEEEccCCCCCh----HHHHHHHHHHhcCCc
Confidence            555666799999999999999999996 9999999999999995 5599999999999999    678889999999988


Q ss_pred             cCCcceeehH----------HHHhhccccCCCceeEEEeecc---cCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          352 LQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAI---GLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       352 ~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c---~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                         |++|||+          ++++++..  +++|++|+|++|   .+|+.|+++||++|+.|++|++|+++.|.+
T Consensus       100 ---L~~L~L~~N~Ig~~Ga~ala~aL~~--N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          100 ---LRVLNVESNFLTPELLARLLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             ---CCEEECCSSBCCHHHHHHHHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ---cCeEecCCCcCCHHHHHHHHHHHhh--CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               9999993          56666666  999999999865   789999999999999999999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.77  E-value=6.9e-19  Score=157.66  Aligned_cols=132  Identities=15%  Similarity=0.140  Sum_probs=116.5

Q ss_pred             CCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcc
Q 015056          273 CPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS  351 (414)
Q Consensus       273 ~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks  351 (414)
                      ++....+.|+.++..+.+|++|+|++| .++|+|++.|+.+|...+ +|++|+|++|.|++    ..+..++.+|..+.+
T Consensus        20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~----~g~~~l~~~L~~n~~   94 (185)
T 1io0_A           20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSND----PVAFALAEMLKVNNT   94 (185)
T ss_dssp             CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCH----HHHHHHHHHHHHCSS
T ss_pred             CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCCh----HHHHHHHHHHHhCCC
Confidence            345667789999999999999999999 999999999999999876 99999999999998    445567778887776


Q ss_pred             cCCcceeehH----------HHHhhccccCCCceeEEEe--ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          352 LQSLRLLNLS----------HIAASLGKFFGTSVQVLNI--GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       352 ~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L--~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                         |++|||+          ++++++..  +++|++|+|  ++|.+|++|+++|+++|..|++|++|+|++|.|+
T Consensus        95 ---L~~L~L~~N~i~~~g~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           95 ---LKSLNVESNFISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             ---CCEEECCSSCCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             ---cCEEECcCCcCCHHHHHHHHHHHHh--CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               9999993          56666666  899999999  8999999999999999999999999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=4.3e-18  Score=165.21  Aligned_cols=200  Identities=16%  Similarity=0.204  Sum_probs=165.6

Q ss_pred             cccccceeeeecc-------chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc
Q 015056          196 ESKLQSLVLRWIR-------FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS  268 (414)
Q Consensus       196 ~ckLq~L~L~~~~-------s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~  268 (414)
                      ..+|++|.|+++.       .+.++..++.+|.... +|++|+|++|.++..++..+...+..-    ..+++|.+..|.
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~----~~L~~L~L~~n~  133 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKH----TPLEHLYLHNNG  133 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHC----TTCCEEECCSSC
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhC----CCCCEEECcCCC
Confidence            3488889888761       2457788888887775 999999999999999999998888553    359999999998


Q ss_pred             cccCCCcccHHHHHHHHhcC---------CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCC
Q 015056          269 FIENCPSSVVVELVSFLSSG---------RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  339 (414)
Q Consensus       269 ~~~~~~~~~~~~Las~Lssn---------~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c  339 (414)
                      + +   ......++.+|..+         ++|++|+|++|++.+.++..+..++...+ +|++|+|++|.|++    ...
T Consensus       134 l-~---~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~----~g~  204 (386)
T 2ca6_A          134 L-G---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRP----EGI  204 (386)
T ss_dssp             C-H---HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCH----HHH
T ss_pred             C-C---HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCH----hHH
Confidence            8 6   56677888888888         89999999999999999999999999988 99999999999996    112


Q ss_pred             CChhh-hhhcCcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhc--CCCCcEE
Q 015056          340 SGPLF-SLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK--ELKLVNI  406 (414)
Q Consensus       340 ~~ls~-aL~~nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~--N~~L~~L  406 (414)
                      ..++. ++..+.   +|++|+|+          .+..++.+  ..+|+.|+|++|.+++.|+.+++.+|..  +++|++|
T Consensus       205 ~~l~~~~l~~~~---~L~~L~Ls~n~l~~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L  279 (386)
T 2ca6_A          205 EHLLLEGLAYCQ---ELKVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  279 (386)
T ss_dssp             HHHHHTTGGGCT---TCCEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             HHHHHHHhhcCC---CccEEECcCCCCCcHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence            22223 554444   49999994          23444555  7899999999999999999999999977  9999999


Q ss_pred             ecCCCCCC
Q 015056          407 NIRFKPIS  414 (414)
Q Consensus       407 dLs~N~i~  414 (414)
                      +|++|.|+
T Consensus       280 ~L~~n~i~  287 (386)
T 2ca6_A          280 RLQYNEIE  287 (386)
T ss_dssp             ECCSSCCB
T ss_pred             ECcCCcCC
Confidence            99999984

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.77  E-value=9.8e-19  Score=173.31  Aligned_cols=195  Identities=17%  Similarity=0.192  Sum_probs=120.6

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      .+++|.|+++ .++..+..++.+|..+..+|++|+|++|.+++.++..++.++.+       +++|.+..|.+ +   ..
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------L~~L~Ls~n~l-~---~~  141 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR-------ARKLGLQLNSL-G---PE  141 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHT-------EEEEECCSSCC-C---HH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHh-------ccHhhcCCCCC-C---HH
Confidence            4555666655 56666666666666554566666666666666666666666552       44666666665 4   45


Q ss_pred             cHHHHHHHHh-cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          277 VVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       277 ~~~~Las~Ls-sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      ....|+.+|. .+.+|++|+|++|.+.+.|++.+..+|...+ +|++|||++|.|++    .....++.+|..+.+   |
T Consensus       142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~----~g~~~L~~~L~~~~~---L  213 (372)
T 3un9_A          142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGD----EGLELLAAQLDRNRQ---L  213 (372)
T ss_dssp             HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHH----HHHHHHHHHGGGCSC---C
T ss_pred             HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCc----HHHHHHHHHHhcCCC---c
Confidence            5556666664 3566666666666666666666666666555 56666666666665    223334445544443   6


Q ss_pred             ceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEe--cCCCCC
Q 015056          356 RLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNIN--IRFKPI  413 (414)
Q Consensus       356 ~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~Ld--Ls~N~i  413 (414)
                      ++|||+          .++.++..  +.+|++|+|++|.+|+.|+++|+.++..+ ..|+.+.  +.+|.+
T Consensus       214 ~~L~Ls~N~i~~~g~~~l~~~L~~--~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          214 QELNVAYNGAGDTAALALARAARE--HPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             CEEECCSSCCCHHHHHHHHHHHHH--CSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             CeEECCCCCCCHHHHHHHHHHHHh--CCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            666662          34444445  78899999999999999999999977665 3488877  777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.70  E-value=2.9e-17  Score=147.13  Aligned_cols=152  Identities=16%  Similarity=0.174  Sum_probs=129.8

Q ss_pred             HHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCccc
Q 015056          214 QALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC  292 (414)
Q Consensus       214 ~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~  292 (414)
                      +.+..++..+. +|++|+|++| .+++.|+..|+++|..-    ..+++|.+..+.+ .   .+....|+.+|..+++|+
T Consensus        26 ~~l~~~l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~----~~L~~L~Ls~n~i-~---~~g~~~l~~~L~~n~~L~   96 (185)
T 1io0_A           26 ETLKRIQNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRS-N---DPVAFALAEMLKVNNTLK   96 (185)
T ss_dssp             HHHHHHHTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCC-C---HHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhC----CCcCEEECcCCCC-C---hHHHHHHHHHHHhCCCcC
Confidence            45666777775 9999999999 99999999999999763    4589999999887 6   677888999999999999


Q ss_pred             EEEccCCCCCchhHHHHHHHhccCCCCccEEec--cCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhcccc
Q 015056          293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDL--SGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF  370 (414)
Q Consensus       293 ~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdL--s~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk~  370 (414)
                      +|+|++|.++|+|+..|+.+|.... +|++|+|  ++|.|++    ....                     .+++++.+ 
T Consensus        97 ~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~----~g~~---------------------~l~~~L~~-  149 (185)
T 1io0_A           97 SLNVESNFISGSGILALVEALQSNT-SLIELRIDNQSQPLGN----NVEM---------------------EIANMLEK-  149 (185)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCCSSCCCH----HHHH---------------------HHHHHHHH-
T ss_pred             EEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCCCCCCCH----HHHH---------------------HHHHHHHh-
Confidence            9999999999999999999999888 8999999  8899998    1111                     44555666 


Q ss_pred             CCCceeEEEeecccCCchhHHHHHHHHhcCCCCc
Q 015056          371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV  404 (414)
Q Consensus       371 L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~  404 (414)
                       +.+|++|+|++|.+|+.|+  ++++|..|.+|+
T Consensus       150 -n~~L~~L~L~~n~i~~~~~--i~~~L~~N~~l~  180 (185)
T 1io0_A          150 -NTTLLKFGYHFTQQGPRLR--ASNAMMNNNDLV  180 (185)
T ss_dssp             -CSSCCEEECCCSSHHHHHH--HHHHHHHHHHHH
T ss_pred             -CCCcCEEeccCCCCChHHH--HHHHHHhhHHHh
Confidence             8889999999999999985  999999997764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.68  E-value=5.7e-17  Score=150.73  Aligned_cols=151  Identities=13%  Similarity=0.230  Sum_probs=125.8

Q ss_pred             HHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCccc
Q 015056          214 QALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLC  292 (414)
Q Consensus       214 ~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~  292 (414)
                      +.+.+++..|. +|++|+|++| .++++|+..||++|. +   ++.++.|.+..+.+ .   .+....||.+|+.|++|+
T Consensus        31 ~~l~~ll~~n~-~L~~L~L~~nn~igd~ga~~la~aL~-~---N~~L~~L~L~~n~i-g---d~ga~alA~aL~~N~tL~  101 (197)
T 1pgv_A           31 SCINRLREDDT-DLKEVNINNMKRVSKERIRSLIEAAC-N---SKHIEKFSLANTAI-S---DSEARGLIELIETSPSLR  101 (197)
T ss_dssp             HHHHHHHTTCS-SCCEEECTTCCSSCHHHHHHHHHHHT-T---CSCCCEEECTTSCC-B---HHHHTTHHHHHHHCSSCC
T ss_pred             HHHHHHHhcCC-CccEEECCCCCCCCHHHHHHHHHHHh-h---CCCcCEEEccCCCC-C---hHHHHHHHHHHhcCCccC
Confidence            35666777775 9999999996 999999999999997 3   37899999999998 6   788899999999999999


Q ss_pred             EEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC---CCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhccc
Q 015056          293 SLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN---SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK  369 (414)
Q Consensus       293 ~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n---~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk  369 (414)
                      +|+|+.|.++|+|++.|+.+|.++. +|++|+|++|   .|++    ..+.                     ++++++..
T Consensus       102 ~L~L~~N~Ig~~Ga~ala~aL~~N~-tL~~L~L~n~~~~~ig~----~g~~---------------------~ia~aL~~  155 (197)
T 1pgv_A          102 VLNVESNFLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGN----QVEM---------------------DMMMAIEE  155 (197)
T ss_dssp             EEECCSSBCCHHHHHHHHHHTTTTC-CCSEEECCCCSSCCCCH----HHHH---------------------HHHHHHHH
T ss_pred             eEecCCCcCCHHHHHHHHHHHhhCC-ceeEEECCCCcCcCcCH----HHHH---------------------HHHHHHHh
Confidence            9999999999999999999999999 5999999976   5565    1122                     45555556


Q ss_pred             cCCCceeEEEeecccCCchhHHHHHHHHhcCCCC
Q 015056          370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKL  403 (414)
Q Consensus       370 ~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L  403 (414)
                        +++|++|+++.|.+|+  ..++|++|+.|.++
T Consensus       156 --N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~  185 (197)
T 1pgv_A          156 --NESLLRVGISFASMEA--RHRVSEALERNYER  185 (197)
T ss_dssp             --CSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred             --CCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence              7777778887666554  35799999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.43  E-value=2e-12  Score=121.71  Aligned_cols=182  Identities=19%  Similarity=0.251  Sum_probs=126.5

Q ss_pred             hhchhccc-cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccC-CCChhHHHHHHhhhcCccccccccceeeccc
Q 015056          190 TCQLLRES-KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLCSKRKRIHKIENLSIDI  266 (414)
Q Consensus       190 ~~~l~~~c-kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~-~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t  266 (414)
                      ....+..+ +|++|.|+++ .++..    ...+.. .++|++|+|++| .+++.++..+...+  +     ++++|.+..
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~----~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~--~-----~L~~L~l~~  177 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPI----VNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC--S-----RLDELNLSW  177 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHH----HHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC--T-----TCCEEECCC
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHH----HHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcC--C-----CCCEEcCCC
Confidence            34444544 7888888877 33332    223333 468999999999 78877777655544  2     377888888


Q ss_pred             c-ccccCCCcccHHHHHHHHhcCC-cccEEEccCC--CCCchhHHHHHHHhccCCCCccEEeccCCC-CCCcccccCCCC
Q 015056          267 S-SFIENCPSSVVVELVSFLSSGR-SLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSG  341 (414)
Q Consensus       267 c-~~~~~~~~~~~~~Las~Lssn~-sL~~L~Ls~N--~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~~~~c~~  341 (414)
                      | .+ +      ...+...+.... +|++|+|++|  .+.|.++..++..+   + +|++|+|++|. +++      .. 
T Consensus       178 ~~~l-~------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~---~-~L~~L~l~~~~~l~~------~~-  239 (336)
T 2ast_B          178 CFDF-T------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---P-NLVHLDLSDSVMLKN------DC-  239 (336)
T ss_dssp             CTTC-C------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---T-TCSEEECTTCTTCCG------GG-
T ss_pred             CCCc-C------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC---C-CCCEEeCCCCCcCCH------HH-
Confidence            8 66 4      123566777788 9999999999  67877776655543   4 89999999998 665      11 


Q ss_pred             hhhhhhcCcccCCcceeehH---HHHhh----ccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          342 PLFSLGAGKSLQSLRLLNLS---HIAAS----LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       342 ls~aL~~nks~~~L~~LnLs---~l~~a----gvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      . .++....   +|++|+|+   .+.+.    +.+  ..+|+.|+|++| +++++.+.+++      +|++|++++|.++
T Consensus       240 ~-~~l~~l~---~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~l~~n~l~  306 (336)
T 2ast_B          240 F-QEFFQLN---YLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQINCSHFT  306 (336)
T ss_dssp             G-GGGGGCT---TCCEEECTTCTTCCGGGGGGGGG--CTTCCEEECTTS-SCTTCHHHHHH------HSTTSEESCCCSC
T ss_pred             H-HHHhCCC---CCCEeeCCCCCCCCHHHHHHHhc--CCCCCEEeccCc-cCHHHHHHHHh------hCcceEEecccCc
Confidence            1 3444444   59999995   23333    344  678999999999 99999888874      3667888888874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.30  E-value=1.9e-11  Score=115.02  Aligned_cols=182  Identities=16%  Similarity=0.178  Sum_probs=131.2

Q ss_pred             hccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecccc-cccc
Q 015056          194 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDIS-SFIE  271 (414)
Q Consensus       194 ~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc-~~~~  271 (414)
                      +.-.+|++|.|+++ .+.....    ....+.++|++|+|++|.+.+.....+..   -+     ++++|.+..| .+ +
T Consensus        90 ~~~~~L~~L~L~~~~l~~~~~~----~~~~~~~~L~~L~L~~~~l~~~~~~~l~~---~~-----~L~~L~L~~~~~l-~  156 (336)
T 2ast_B           90 FSPFRVQHMDLSNSVIEVSTLH----GILSQCSKLQNLSLEGLRLSDPIVNTLAK---NS-----NLVRLNLSGCSGF-S  156 (336)
T ss_dssp             CCCBCCCEEECTTCEECHHHHH----HHHTTBCCCSEEECTTCBCCHHHHHHHTT---CT-----TCSEEECTTCBSC-C
T ss_pred             ccCCCCCEEEccCCCcCHHHHH----HHHhhCCCCCEEeCcCcccCHHHHHHHhc---CC-----CCCEEECCCCCCC-C
Confidence            34467888888877 3333222    33456679999999999998887776643   23     4889999988 44 4


Q ss_pred             CCCcccHHHHHHHHhcCCcccEEEccCC-CCCchhHHHHHHHhccCCCCccEEeccCC--CCCCcccccCCCChhhhhhc
Q 015056          272 NCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLGA  348 (414)
Q Consensus       272 ~~~~~~~~~Las~Lssn~sL~~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~n--~Lt~wl~~~~c~~ls~aL~~  348 (414)
                            ...+..++...++|++|+|++| .+.+.++..++..+..   +|++|+|++|  .+++      .. +...+..
T Consensus       157 ------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~---~L~~L~l~~~~~~~~~------~~-l~~~~~~  220 (336)
T 2ast_B          157 ------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---TITQLNLSGYRKNLQK------SD-LSTLVRR  220 (336)
T ss_dssp             ------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT---TCCEEECCSCGGGSCH------HH-HHHHHHH
T ss_pred             ------HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc---CCCEEEeCCCcccCCH------HH-HHHHHhh
Confidence                  1247777888999999999999 9999887766665432   8999999999  5664      11 3234433


Q ss_pred             CcccCCcceeehH--H-HHhhccccC--CCceeEEEeecc-cCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056          349 GKSLQSLRLLNLS--H-IAASLGKFF--GTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       349 nks~~~L~~LnLs--~-l~~agvk~L--~c~Lq~L~L~~c-~lg~~gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                      ..   +|++|+|+  . +.+.+...+  -.+|+.|+|++| ++++.+...    +...++|++|+|++|
T Consensus       221 ~~---~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          221 CP---NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CT---TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTS
T ss_pred             CC---CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH----HhcCCCCCEEeccCc
Confidence            34   59999995  2 333333222  589999999999 788887744    456889999999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.05  E-value=6.5e-11  Score=111.87  Aligned_cols=43  Identities=12%  Similarity=0.157  Sum_probs=19.0

Q ss_pred             hccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCC
Q 015056          194 LRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLS  238 (414)
Q Consensus       194 ~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~  238 (414)
                      ++..++++|.+..+ .++.....+...+..  ++|++|+|++|.+.
T Consensus        61 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~  104 (310)
T 4glp_A           61 VKALRVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKIT  104 (310)
T ss_dssp             GSSCCCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCB
T ss_pred             hhhcceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEec
Confidence            34444555555554 444444444333221  13555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.03  E-value=1.6e-09  Score=109.45  Aligned_cols=197  Identities=14%  Similarity=0.086  Sum_probs=106.1

Q ss_pred             hhchhccc-cccceeeeecc-chHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccc-
Q 015056          190 TCQLLRES-KLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDI-  266 (414)
Q Consensus       190 ~~~l~~~c-kLq~L~L~~~~-s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t-  266 (414)
                      ++..+..+ +|++|.|+++. +...   + ..++++.++|++|+++ +.+.+.++..+...+.       ++++|.+.. 
T Consensus       285 l~~~~~~~~~L~~L~Ls~~~l~~~~---~-~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~-------~L~~L~L~~g  352 (592)
T 3ogk_B          285 MPILFPFAAQIRKLDLLYALLETED---H-CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK-------QLKRLRIERG  352 (592)
T ss_dssp             GGGGGGGGGGCCEEEETTCCCCHHH---H-HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT-------TCCEEEEECC
T ss_pred             HHHHHhhcCCCcEEecCCCcCCHHH---H-HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC-------CCCEEEeecC
Confidence            33444443 67777777663 3322   2 2334555677777777 5566666665544322       255666663 


Q ss_pred             ---------cccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEecc----CCCCCCc
Q 015056          267 ---------SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS----GNSIGGW  333 (414)
Q Consensus       267 ---------c~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs----~n~Lt~w  333 (414)
                               |...+      ...+..+...+++|++|+|+.|.+.+++...+...+.    +|++|+|+    .|.|++.
T Consensus       353 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~----~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          353 ADEQGMEDEEGLVS------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK----NLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CCSSTTSSTTCCCC------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC----SCCEEEEEECSCCSCCSSC
T ss_pred             ccccccccccCccC------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC----CCcEEEEeecCCCccccCc
Confidence                     33212      1234444455666777777777776666666554332    56666664    4555541


Q ss_pred             -----ccc--cCCCCh----------------hhhhhcCcccCCcceeehH--HHHhh----ccccCCCceeEEEeeccc
Q 015056          334 -----LSK--YDRSGP----------------LFSLGAGKSLQSLRLLNLS--HIAAS----LGKFFGTSVQVLNIGAIG  384 (414)
Q Consensus       334 -----l~~--~~c~~l----------------s~aL~~nks~~~L~~LnLs--~l~~a----gvk~L~c~Lq~L~L~~c~  384 (414)
                           +..  ..|..+                ...+.  ..+.+|++|+|+  .+.+.    ..+. -.+|+.|+|++|.
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~L~~L~l~~n~  499 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVGESDEGLMEFSRG-CPNLQKLEMRGCC  499 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCCSSHHHHHHHHTC-CTTCCEEEEESCC
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCCCCHHHHHHHHhc-CcccCeeeccCCC
Confidence                 000  001100                01111  113447777774  22221    1120 3568888888888


Q ss_pred             CCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          385 LGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       385 lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +++.|..+++..   -++|++|+|++|+|+
T Consensus       500 l~~~~~~~~~~~---l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          500 FSERAIAAAVTK---LPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CBHHHHHHHHHH---CSSCCEEEEESCBCC
T ss_pred             CcHHHHHHHHHh---cCccCeeECcCCcCC
Confidence            887777766654   367888888888874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.01  E-value=2.3e-10  Score=113.72  Aligned_cols=42  Identities=31%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .+|++|+|+.|.+++.|+++|+..|+.+++|++|+|+.|.|+
T Consensus       279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            456666666666666666666666655566666666666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.99  E-value=5.1e-10  Score=105.76  Aligned_cols=166  Identities=14%  Similarity=0.213  Sum_probs=117.6

Q ss_pred             hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      +.+. .++.|.+.++.+....+..+...+..+.     +++|.+..+.+ +   ...+..++.  ....+|+.|+|++|+
T Consensus        61 ~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~~~~-----L~~L~l~~n~l-~---~~~~~~~~~--~~~~~L~~L~Ls~n~  128 (310)
T 4glp_A           61 VKAL-RVRRLTVGAAQVPAQLLVGALRVLAYSR-----LKELTLEDLKI-T---GTMPPLPLE--ATGLALSSLRLRNVS  128 (310)
T ss_dssp             GSSC-CCCEEEECSCCCBHHHHHHHHHHHHHSC-----CCEEEEESCCC-B---SCCCCCSSS--CCCBCCSSCEEESCC
T ss_pred             hhhc-ceeEEEEeCCcCCHHHHHHHHHhcccCc-----eeEEEeeCCEe-c---cchhhhhhh--ccCCCCCEEEeeccc
Confidence            3444 7899999999999999998888877766     89999998887 4   222222211  667899999999999


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH-Hh-----hc--ccc
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI-AA-----SL--GKF  370 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l-~~-----ag--vk~  370 (414)
                      +...+...-...+...+ +|++|+|++|.|++    ..+.    ++..   +.+|++|||+  .+ ++     ..  .+ 
T Consensus       129 i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~----~~~~----~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-  195 (310)
T 4glp_A          129 WATGRSWLAELQQWLKP-GLKVLSIAQAHSPA----FSCE----QVRA---FPALTSLDLSDNPGLGERGLMAALCPHK-  195 (310)
T ss_dssp             CSSTTSSHHHHHTTBCS-CCCEEEEECCSSCC----CCTT----SCCC---CTTCCEEECCSCTTCHHHHHHTTSCTTS-
T ss_pred             ccchhhhhHHHHhhhcc-CCCEEEeeCCCcch----hhHH----Hhcc---CCCCCEEECCCCCCccchhhhHHHhhhc-
Confidence            98765544334555566 99999999999987    3333    3333   3459999995  22 21     11  22 


Q ss_pred             CCCceeEEEeecccCCchhHHHHHHH-HhcCCCCcEEecCCCCCC
Q 015056          371 FGTSVQVLNIGAIGLGSSGFRVLQDG-VTKELKLVNINIRFKPIS  414 (414)
Q Consensus       371 L~c~Lq~L~L~~c~lg~~gcqaLa~a-L~~N~~L~~LdLs~N~i~  414 (414)
                       -.+|++|+|++|.++..+.  +..+ +..-++|++||+++|+|+
T Consensus       196 -l~~L~~L~Ls~N~l~~l~~--~~~~l~~~l~~L~~L~Ls~N~l~  237 (310)
T 4glp_A          196 -FPAIQNLALRNTGMETPTG--VCAALAAAGVQPHSLDLSHNSLR  237 (310)
T ss_dssp             -SCCCCSCBCCSSCCCCHHH--HHHHHHHHTCCCSSEECTTSCCC
T ss_pred             -CCCCCEEECCCCCCCchHH--HHHHHHhcCCCCCEEECCCCCCC
Confidence             4579999999999975432  2333 345578999999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.99  E-value=1.4e-09  Score=109.61  Aligned_cols=111  Identities=16%  Similarity=0.067  Sum_probs=62.8

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-----cc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-----FI  270 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-----~~  270 (414)
                      .+|++|.|+++ .++..    ...++++.++|++|++++| +.+.++..+...+  +     ++++|.+..|.     .|
T Consensus       289 ~~L~~L~L~~~~l~~~~----l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~--~-----~L~~L~L~~~~~~g~~~~  356 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYD----LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC--K-----DLRELRVFPSEPFVMEPN  356 (594)
T ss_dssp             TTCCEEECTTCCCCHHH----HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC--T-----TCCEEEEECSCTTCSSCS
T ss_pred             CCCCEEEccCCCCCHHH----HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC--C-----CCCEEEEecCcccccccC
Confidence            37788877776 33222    3344556567888888877 6666666555432  1     25566663321     00


Q ss_pred             cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEecc
Q 015056          271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS  326 (414)
Q Consensus       271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs  326 (414)
                      .   .-....+..+...+++|++|.++.|.+.+.++..+...+   + +|++|+|+
T Consensus       357 ~---~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~---~-~L~~L~L~  405 (594)
T 2p1m_B          357 V---ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR---P-NMTRFRLC  405 (594)
T ss_dssp             S---CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC---T-TCCEEEEE
T ss_pred             C---CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC---C-CcceeEee
Confidence            1   111223444444566777777777777777666655443   2 56777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.98  E-value=2.7e-09  Score=107.69  Aligned_cols=189  Identities=13%  Similarity=0.066  Sum_probs=121.9

Q ss_pred             cccceeeeeccchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCccc
Q 015056          198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV  277 (414)
Q Consensus       198 kLq~L~L~~~~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~  277 (414)
                      +|++|.+.++... .    ...+..+.++|++|+|++|.+...++..+...+       .++++|.+..+..        
T Consensus       271 ~L~~L~l~~~~~~-~----l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-------~~L~~L~L~~~~~--------  330 (592)
T 3ogk_B          271 KLCRLGLSYMGPN-E----MPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-------PNLEVLETRNVIG--------  330 (592)
T ss_dssp             TCCEEEETTCCTT-T----GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-------TTCCEEEEEGGGH--------
T ss_pred             cccccCccccchh-H----HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-------cCCCEEeccCccC--------
Confidence            6777777654211 1    122445567999999999998887765433322       2488888874332        


Q ss_pred             HHHHHHHHhcCCcccEEEcc-----------CCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc---cCCCChh
Q 015056          278 VVELVSFLSSGRSLCSLKLR-----------HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK---YDRSGPL  343 (414)
Q Consensus       278 ~~~Las~Lssn~sL~~L~Ls-----------~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~---~~c~~ls  343 (414)
                      ...+..+...+++|++|+|+           .|.+.+.+...+...+   + +|++|+|+.|.|++..-.   ..|..+ 
T Consensus       331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~-~L~~L~l~~~~l~~~~~~~l~~~~~~L-  405 (592)
T 3ogk_B          331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---Q-ELEYMAVYVSDITNESLESIGTYLKNL-  405 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC---T-TCSEEEEEESCCCHHHHHHHHHHCCSC-
T ss_pred             HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC---c-cCeEEEeecCCccHHHHHHHHhhCCCC-
Confidence            23566777788999999999           4899999998887665   3 899999999999871100   001111 


Q ss_pred             hhhhc---------------------CcccCCcceeehH----HHHhhccccC---CCceeEEEeecccCCchhHHHHHH
Q 015056          344 FSLGA---------------------GKSLQSLRLLNLS----HIAASLGKFF---GTSVQVLNIGAIGLGSSGFRVLQD  395 (414)
Q Consensus       344 ~aL~~---------------------nks~~~L~~LnLs----~l~~agvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~  395 (414)
                      ..|..                     ..++.+|++|+|+    .+.+.+...+   ..+|+.|+|+.|++++.|..++..
T Consensus       406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  485 (592)
T 3ogk_B          406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR  485 (592)
T ss_dssp             CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred             cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence            00000                     1124457777772    1222222111   356899999999999887766544


Q ss_pred             HHhcCCCCcEEecCCCCCC
Q 015056          396 GVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       396 aL~~N~~L~~LdLs~N~i~  414 (414)
                      .   -++|++|+|++|.|+
T Consensus       486 ~---~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          486 G---CPNLQKLEMRGCCFS  501 (592)
T ss_dssp             C---CTTCCEEEEESCCCB
T ss_pred             c---CcccCeeeccCCCCc
Confidence            3   478999999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.97  E-value=2.9e-10  Score=113.04  Aligned_cols=166  Identities=14%  Similarity=0.054  Sum_probs=100.9

Q ss_pred             HHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEE
Q 015056          216 LCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLK  295 (414)
Q Consensus       216 L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~  295 (414)
                      +...+.+. ++|++|+|++|.    ++       .-+..+.+++++|.+..|.+ +   .+....++  ....++|++|+
T Consensus       164 L~~ll~~~-P~L~~L~L~g~~----~l-------~l~~~~~~~L~~L~L~~~~l-~---~~~l~~l~--~~~lp~L~~L~  225 (362)
T 2ra8_A          164 LSPVLDAM-PLLNNLKIKGTN----NL-------SIGKKPRPNLKSLEIISGGL-P---DSVVEDIL--GSDLPNLEKLV  225 (362)
T ss_dssp             CHHHHHTC-TTCCEEEEECCB----TC-------BCCSCBCTTCSEEEEECSBC-C---HHHHHHHH--HSBCTTCCEEE
T ss_pred             HHHHHhcC-CCCcEEEEeCCC----Cc-------eeccccCCCCcEEEEecCCC-C---hHHHHHHH--HccCCCCcEEE
Confidence            33444443 488888888772    11       11112245688888877765 3   22222222  12567888888


Q ss_pred             ccC---CCCCchhHHHHHHHhccC-CCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccc
Q 015056          296 LRH---CHLDRDFGRMVFSSLLEA-SSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGK  369 (414)
Q Consensus       296 Ls~---N~L~d~gaklL~~~Ll~~-~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk  369 (414)
                      |+.   +..++.+++.|...+... ..+|+.|+|++|.|++    ..+    .++.....+.+|++|||+  .+.+.|++
T Consensus       226 L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~----~~~----~~la~a~~~~~L~~LdLs~n~L~d~G~~  297 (362)
T 2ra8_A          226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN----VVV----EMFLESDILPQLETMDISAGVLTDEGAR  297 (362)
T ss_dssp             EECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH----HHH----HHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred             EeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch----HHH----HHHHhCccCCCCCEEECCCCCCChHHHH
Confidence            753   223444455544444422 2388888888888876    212    233322334568888885  34443322


Q ss_pred             cC------CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          370 FF------GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       370 ~L------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      .+      .++|++|+|+.|.+|++|+++|++|+     ..++|++.|+
T Consensus       298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~  341 (362)
T 2ra8_A          298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ  341 (362)
T ss_dssp             HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred             HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence            22      47899999999999999999999998     6668888774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.96  E-value=3.5e-09  Score=100.26  Aligned_cols=84  Identities=19%  Similarity=0.213  Sum_probs=42.2

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|++++|.+.....      +..    --.++.+.+..+.+ +    ....     +...++|+.|+|++|++
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~------~~~----l~~L~~L~l~~n~l-~----~~~~-----~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          174 ANLTDLYSLSLNYNQIEDISP------LAS----LTSLHYFTAYVNQI-T----DITP-----VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             GGCTTCSEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCC-C----CCGG-----GGGCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEEccCCccccccc------ccC----CCccceeecccCCC-C----CCch-----hhcCCcCCEEEccCCcc
Confidence            344577777777776654321      111    12244555554444 2    0110     45556666666666666


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+...      +...+ +|++|+|++|.|++
T Consensus       234 ~~~~~------~~~l~-~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          234 TDLSP------LANLS-QLTWLEIGTNQISD  257 (347)
T ss_dssp             CCCGG------GTTCT-TCCEEECCSSCCCC
T ss_pred             CCCcc------hhcCC-CCCEEECCCCccCC
Confidence            55433      33333 56666666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.94  E-value=4.7e-09  Score=105.75  Aligned_cols=17  Identities=6%  Similarity=0.471  Sum_probs=12.4

Q ss_pred             ccCCChhhHHHHHhcCC
Q 015056           29 VYELPADLFDILLTCLP   45 (414)
Q Consensus        29 ~~~Lp~~~~~~v~~~Lp   45 (414)
                      +.+||+|.+..|+..||
T Consensus         6 ~~~LPdevL~~If~~L~   22 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQ   22 (594)
T ss_dssp             ----CHHHHHHHHHTCC
T ss_pred             hhhCCHHHHHHHHhhcC
Confidence            57899999999999999

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.90  E-value=1.9e-09  Score=102.63  Aligned_cols=162  Identities=15%  Similarity=0.178  Sum_probs=111.1

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      -+|+.|.|++. .+....       ..+.++|++|+|++|.+....      .+..    --.+++|.+..+.+ +    
T Consensus        63 ~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~l~~~~------~~~~----l~~L~~L~l~~n~l-~----  120 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP-------LKNLTKITELELSGNPLKNVS------AIAG----LQSIKTLDLTSTQI-T----  120 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCCCSCCG------GGTT----CTTCCEEECTTSCC-C----
T ss_pred             CCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCcCCCch------hhcC----CCCCCEEECCCCCC-C----
Confidence            46777777766 322211       456678999999999887632      2222    13588888888887 4    


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      ..+     .+...++|++|+|++|++.+-..      +...+ .|+.|+|++|.|++      -.    .+..   +.+|
T Consensus       121 ~~~-----~l~~l~~L~~L~l~~n~l~~~~~------l~~l~-~L~~L~l~~n~l~~------~~----~l~~---l~~L  175 (308)
T 1h6u_A          121 DVT-----PLAGLSNLQVLYLDLNQITNISP------LAGLT-NLQYLSIGNAQVSD------LT----PLAN---LSKL  175 (308)
T ss_dssp             CCG-----GGTTCTTCCEEECCSSCCCCCGG------GGGCT-TCCEEECCSSCCCC------CG----GGTT---CTTC
T ss_pred             Cch-----hhcCCCCCCEEECCCCccCcCcc------ccCCC-CccEEEccCCcCCC------Ch----hhcC---CCCC
Confidence            121     26778899999999999877554      55555 89999999999987      11    1332   3458


Q ss_pred             ceeehH--HHHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          356 RLLNLS--HIAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       356 ~~LnLs--~l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|+|+  .+.+  .+..  -.+|+.|+|++|.+++..      .+...++|++|++++|.|
T Consensus       176 ~~L~l~~n~l~~~~~l~~--l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          176 TTLKADDNKISDISPLAS--LPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CEEECCSSCCCCCGGGGG--CTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEE
T ss_pred             CEEECCCCccCcChhhcC--CCCCCEEEccCCccCccc------cccCCCCCCEEEccCCee
Confidence            888884  1111  1334  678999999999998876      267778899999999876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.90  E-value=1.8e-09  Score=105.75  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHh
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSL  313 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~L  313 (414)
                      ...+|+.|+|++|++.......+...+
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             ccceeeeEecCCCcccccchhhhhccc
Confidence            446788888888888777777766653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.90  E-value=4.8e-09  Score=99.39  Aligned_cols=156  Identities=21%  Similarity=0.143  Sum_probs=97.0

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHH--hcCCcccEEEccCCCCC
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFL--SSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~L--ssn~sL~~L~Ls~N~L~  302 (414)
                      ++|++|+|++|.+......    .+..    --.+++|.+..+.+ .    . ...+-..+  ....+|+.|+|++|++.
T Consensus       149 ~~L~~L~L~~N~l~~~~~~----~~~~----l~~L~~L~Ls~N~l-~----~-~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE----QVRV----FPALSTLDLSDNPE-L----G-ERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT----TCCC----CSSCCEEECCSCTT-C----H-HHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCcEEEeeCCCCccchHH----Hhcc----CCCCCEEECCCCCc-C----c-chHHHHHHHhccCCCCCEEECCCCcCc
Confidence            4677777777766542211    1111    13477777776665 2    0 01122222  66789999999999997


Q ss_pred             chhHHHHHHHhc-cCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCceeEEE
Q 015056          303 RDFGRMVFSSLL-EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLN  379 (414)
Q Consensus       303 d~gaklL~~~Ll-~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~Lq~L~  379 (414)
                      .-+  .+...+. ..+ +|++|+|++|.|++...      . ..+   ..+.+|++|+|+  .+. .+-..+..+|+.|+
T Consensus       215 ~~~--~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~------~-~~~---~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~  280 (312)
T 1wwl_A          215 TPS--GVCSALAAARV-QLQGLDLSHNSLRDAAG------A-PSC---DWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLD  280 (312)
T ss_dssp             CHH--HHHHHHHHTTC-CCSEEECTTSCCCSSCC------C-SCC---CCCTTCCEEECTTSCCS-SCCSSCCSEEEEEE
T ss_pred             chH--HHHHHHHhcCC-CCCEEECCCCcCCcccc------h-hhh---hhcCCCCEEECCCCccC-hhhhhccCCceEEE
Confidence            422  2333333 334 89999999999987221      0 111   123459999996  333 23232347899999


Q ss_pred             eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|.++..-  .    +..-++|++|++++|+|+
T Consensus       281 Ls~N~l~~~p--~----~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          281 LSYNRLDRNP--S----PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCSSCCCSCC--C----TTTSCEEEEEECTTCTTT
T ss_pred             CCCCCCCCCh--h----HhhCCCCCEEeccCCCCC
Confidence            9999998761  1    556688999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.88  E-value=5.1e-09  Score=99.08  Aligned_cols=163  Identities=14%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      .+|+.|.+++. .+....       ..+.++|+.|++++|.+.....      +..    -.+++.|.+..+.+ +    
T Consensus       177 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~------~~~----~~~L~~L~l~~n~l-~----  234 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDITP------VAN----MTRLNSLKIGNNKI-T----  234 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG------GGG----CTTCCEEECCSSCC-C----
T ss_pred             CCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCCch------hhc----CCcCCEEEccCCcc-C----
Confidence            36777777766 222111       4455799999999998876443      111    13588999998887 5    


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      ..+.     +....+|+.|+|++|.+.+-      ..+...+ +|++|+|++|.|+++          .++...   .+|
T Consensus       235 ~~~~-----~~~l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~l~~n~l~~~----------~~~~~l---~~L  289 (347)
T 4fmz_A          235 DLSP-----LANLSQLTWLEIGTNQISDI------NAVKDLT-KLKMLNVGSNQISDI----------SVLNNL---SQL  289 (347)
T ss_dssp             CCGG-----GTTCTTCCEEECCSSCCCCC------GGGTTCT-TCCEEECCSSCCCCC----------GGGGGC---TTC
T ss_pred             CCcc-----hhcCCCCCEEECCCCccCCC------hhHhcCC-CcCEEEccCCccCCC----------hhhcCC---CCC
Confidence            1221     77889999999999999874      3466666 999999999999982          234333   449


Q ss_pred             ceeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          356 RLLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       356 ~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|+|+      ...+.+.+  -.+|+.|+|++|.++....      +..-++|++||+++|.|+
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGG--LTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHT--CTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred             CEEECcCCcCCCcChhHhhc--cccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence            999994      22233444  5789999999999998654      667789999999999984

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.87  E-value=1.7e-09  Score=95.89  Aligned_cols=107  Identities=21%  Similarity=0.165  Sum_probs=65.8

Q ss_pred             HHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--
Q 015056          284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--  361 (414)
Q Consensus       284 ~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--  361 (414)
                      .+...++|+.|+|++|++.+.....    +...+ +|++|+|++|.|++.        ....+....   +|++|+|+  
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~-~L~~L~Ls~n~i~~~--------~~~~l~~l~---~L~~L~L~~n  146 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPN----LSGLT-SLTLLDISHSAHDDS--------ILTKINTLP---KVNSIDLSYN  146 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCC----CTTCT-TCCEEECCSSBCBGG--------GHHHHTTCS---SCCEEECCSC
T ss_pred             hhhcCCCCCEEEeECCccCcccChh----hcCCC-CCCEEEecCCccCcH--------hHHHHhhCC---CCCEEEccCC
Confidence            3455677777777777776544332    23334 677777777777751        113343333   47777774  


Q ss_pred             H-HHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          362 H-IAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       362 ~-l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      . +.+  .+..  -.+|+.|++++|.+++..      .+..-++|++|++++|+|+
T Consensus       147 ~~i~~~~~l~~--l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          147 GAITDIMPLKT--LPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TBCCCCGGGGG--CSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred             CCccccHhhcC--CCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence            2 221  1223  467899999999998743      5667788999999999985

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.83  E-value=3.9e-09  Score=99.79  Aligned_cols=144  Identities=21%  Similarity=0.167  Sum_probs=103.5

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      ++.++|++|+|++|.+..-.-      +..    --.++.|.+..+.+ +    .    +. .+...++|++|+|++|.+
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~~------l~~----l~~L~~L~l~~n~l-~----~----~~-~l~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIKP------LAN----LKNLGWLFLDENKV-K----D----LS-SLKDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG------GTT----CTTCCEEECCSSCC-C----C----GG-GGTTCTTCCEEECTTSCC
T ss_pred             hcCCCCCEEEccCCccCCCcc------ccc----CCCCCEEECCCCcC-C----C----Ch-hhccCCCCCEEECCCCcC
Confidence            445689999999998865321      111    13477888887776 4    1    11 267789999999999999


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~  377 (414)
                      .+-      ..+...+ +|++|+|++|.|++    .      ..+....   +|++|+|+  .+.+  .+..  -.+|+.
T Consensus       125 ~~~------~~l~~l~-~L~~L~l~~n~l~~----~------~~l~~l~---~L~~L~L~~N~l~~~~~l~~--l~~L~~  182 (291)
T 1h6t_A          125 SDI------NGLVHLP-QLESLYLGNNKITD----I------TVLSRLT---KLDTLSLEDNQISDIVPLAG--LTKLQN  182 (291)
T ss_dssp             CCC------GGGGGCT-TCCEEECCSSCCCC----C------GGGGGCT---TCSEEECCSSCCCCCGGGTT--CTTCCE
T ss_pred             CCC------hhhcCCC-CCCEEEccCCcCCc----c------hhhccCC---CCCEEEccCCccccchhhcC--CCccCE
Confidence            873      4566666 89999999999998    2      2444444   49999995  2211  1334  678999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |+|++|.+++..      .+...++|+.|++++|+|
T Consensus       183 L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          183 LYLSKNHISDLR------ALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             EECCSSCCCBCG------GGTTCTTCSEEEEEEEEE
T ss_pred             EECCCCcCCCCh------hhccCCCCCEEECcCCcc
Confidence            999999999852      477788999999999975

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.82  E-value=1.6e-08  Score=96.20  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=107.2

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+..-..      +..    --.+++|.+..+.+ +    ..     ..+....+|++|+|++|++
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~------~~~----l~~L~~L~L~~n~l-~----~~-----~~~~~l~~L~~L~l~~n~l  119 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP------LKN----LTKITELELSGNPL-K----NV-----SAIAGLQSIKTLDLTSTQI  119 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG------GTT----CCSCCEEECCSCCC-S----CC-----GGGTTCTTCCEEECTTSCC
T ss_pred             hccCCCCEEEccCCcCCCChh------Hcc----CCCCCEEEccCCcC-C----Cc-----hhhcCCCCCCEEECCCCCC
Confidence            455799999999998875332      111    13488999998887 5    11     1467789999999999999


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~  377 (414)
                      .+-.      .+...+ +|++|+|++|.|++      -.    .+..   +.+|++|+|+  .+.+  .+.+  -.+|+.
T Consensus       120 ~~~~------~l~~l~-~L~~L~l~~n~l~~------~~----~l~~---l~~L~~L~l~~n~l~~~~~l~~--l~~L~~  177 (308)
T 1h6u_A          120 TDVT------PLAGLS-NLQVLYLDLNQITN------IS----PLAG---LTNLQYLSIGNAQVSDLTPLAN--LSKLTT  177 (308)
T ss_dssp             CCCG------GGTTCT-TCCEEECCSSCCCC------CG----GGGG---CTTCCEEECCSSCCCCCGGGTT--CTTCCE
T ss_pred             CCch------hhcCCC-CCCEEECCCCccCc------Cc----cccC---CCCccEEEccCCcCCCChhhcC--CCCCCE
Confidence            8743      356666 99999999999997      11    2333   3459999995  2211  1333  578999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+|++|.+++...      +...++|++|++++|+|+
T Consensus       178 L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          178 LKADDNKISDISP------LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             EECCSSCCCCCGG------GGGCTTCCEEECTTSCCC
T ss_pred             EECCCCccCcChh------hcCCCCCCEEEccCCccC
Confidence            9999999998654      678899999999999984

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.81  E-value=9e-09  Score=97.30  Aligned_cols=141  Identities=18%  Similarity=0.167  Sum_probs=106.2

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+..-.      .+..    --+++.|.+..+.+ +    ...    . +....+|+.|+|++|++.+-
T Consensus        46 ~~L~~L~l~~~~i~~~~------~~~~----l~~L~~L~L~~n~l-~----~~~----~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ------GIQY----LPNVTKLFLNGNKL-T----DIK----P-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             HTCCEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCC-C----CCG----G-GTTCTTCCEEECCSSCCCCG
T ss_pred             CcccEEEccCCCcccCh------hHhc----CCCCCEEEccCCcc-C----CCc----c-cccCCCCCEEECCCCcCCCC
Confidence            58999999999876431      1211    13488899988887 4    122    2 78889999999999999873


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEE
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLN  379 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~  379 (414)
                            ..+...+ +|++|+|++|.|++    .      ..+...   .+|++|+|+     .+ ..+.+  -.+|+.|+
T Consensus       106 ------~~l~~l~-~L~~L~L~~n~i~~----~------~~l~~l---~~L~~L~l~~n~l~~~-~~l~~--l~~L~~L~  162 (291)
T 1h6t_A          106 ------SSLKDLK-KLKSLSLEHNGISD----I------NGLVHL---PQLESLYLGNNKITDI-TVLSR--LTKLDTLS  162 (291)
T ss_dssp             ------GGGTTCT-TCCEEECTTSCCCC----C------GGGGGC---TTCCEEECCSSCCCCC-GGGGG--CTTCSEEE
T ss_pred             ------hhhccCC-CCCEEECCCCcCCC----C------hhhcCC---CCCCEEEccCCcCCcc-hhhcc--CCCCCEEE
Confidence                  3466666 99999999999998    2      234333   449999995     23 33444  68899999


Q ss_pred             eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|.+++...      +...++|++|++++|.|+
T Consensus       163 L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          163 LEDNQISDIVP------LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CCSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred             ccCCccccchh------hcCCCccCEEECCCCcCC
Confidence            99999998753      677899999999999985

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.78  E-value=3.8e-08  Score=98.38  Aligned_cols=44  Identities=25%  Similarity=0.180  Sum_probs=24.7

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ....+|+.|+|++|++..  +..+...+...+ +|++|+|++|.|++
T Consensus       345 ~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~-~L~~L~Ls~N~l~~  388 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKE--LSKIAEMTTQMK-SLQQLDISQNSVSY  388 (520)
T ss_dssp             CCCSSCCEEECCSSCCCB--HHHHHHHHTTCT-TCCEEECCSSCCBC
T ss_pred             ccCCCCCEEEccCCccCc--cccchHHHhhCC-CCCEEECCCCcCCc
Confidence            455666666666666653  112223344444 66666776666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.76  E-value=1.2e-08  Score=102.14  Aligned_cols=42  Identities=17%  Similarity=0.052  Sum_probs=26.7

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ....+|++|+|++|++.+...    ..+...+ .|++|+|++|.|++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~  362 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVF----ENCGHLT-ELETLILQMNQLKE  362 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTT----TTCCCCS-SCCEEECCSSCCCB
T ss_pred             hhCCcccEEEeECCccChhhh----hhhccCC-CCCEEEccCCccCc
Confidence            345677777777777765322    2234444 77777777777775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.75  E-value=9.5e-09  Score=100.58  Aligned_cols=160  Identities=18%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccc-------------------------------cccccceeeccccccccCC
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRK-------------------------------RIHKIENLSIDISSFIENC  273 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v-------------------------------~~C~lq~lsl~tc~~~~~~  273 (414)
                      ++|++|++++|.+.......++..+..+..                               ...+++.+.+..+.+ +  
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~--  288 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-F--  288 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-C--
T ss_pred             ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc-c--
Confidence            478888888888888777777766433320                               002455666665555 3  


Q ss_pred             CcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccC
Q 015056          274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ  353 (414)
Q Consensus       274 ~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~  353 (414)
                       .    .+...+...++|+.|+|++|++.+....    .+...+ .|++|+|++|.|++    ..    ..++....   
T Consensus       289 -~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~-~L~~L~Ls~N~l~~----~~----~~~~~~l~---  347 (455)
T 3v47_A          289 -A----LLKSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLT-HLLKLNLSQNFLGS----ID----SRMFENLD---  347 (455)
T ss_dssp             -E----ECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCT-TCCEEECCSSCCCE----EC----GGGGTTCT---
T ss_pred             -c----cchhhcccCCCCCEEECCCCcccccChh----HhcCcc-cCCEEECCCCccCC----cC----hhHhcCcc---
Confidence             1    1233456678888888888888754322    223344 88888888888876    11    12443333   


Q ss_pred             CcceeehH--HHH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          354 SLRLLNLS--HIA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       354 ~L~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|++|+|+  .+.    .++..  -.+|+.|+|++|.++.....    ++..-++|++|+|++|+++
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLG--LPNLKELALDTNQLKSVPDG----IFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBC
T ss_pred             cCCEEECCCCcccccChhhccc--cccccEEECCCCccccCCHh----HhccCCcccEEEccCCCcc
Confidence            48899885  222    22333  57899999999999875432    3455688999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.72  E-value=5.3e-08  Score=92.18  Aligned_cols=164  Identities=16%  Similarity=0.123  Sum_probs=86.6

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhc-CCcccEEEccCCCC
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHL  301 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lss-n~sL~~L~Ls~N~L  301 (414)
                      +.++|++|+|++|.+.......+.   .   ..--.+++|.+....+ +    ..+..+...-.. ..+|++|+|++|++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~---~---~~l~~L~~L~Ls~N~l-~----~~~~~~~~l~~~~~~~L~~L~L~~N~l  161 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLL---E---ATGPDLNILNLRNVSW-A----TRDAWLAELQQWLKPGLKVLSIAQAHS  161 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSS---S---CCSCCCSEEEEESCBC-S----SSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred             CcCCccEEEccCCcccchhHHHHH---H---hcCCCccEEEccCCCC-c----chhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence            446899999999977542221110   0   0113467777777766 4    122233332111 26788888888877


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH------Hhhc-cccCC
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI------AASL-GKFFG  372 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l------~~ag-vk~L~  372 (414)
                      .....    ..+...+ +|++|+|++|.+++...      ....+ ....+.+|++|+|+  .+      .... ..  -
T Consensus       162 ~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~------~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--l  227 (312)
T 1wwl_A          162 LNFSC----EQVRVFP-ALSTLDLSDNPELGERG------LISAL-CPLKFPTLQVLALRNAGMETPSGVCSALAAA--R  227 (312)
T ss_dssp             CCCCT----TTCCCCS-SCCEEECCSCTTCHHHH------HHHHS-CTTSCTTCCEEECTTSCCCCHHHHHHHHHHT--T
T ss_pred             ccchH----HHhccCC-CCCEEECCCCCcCcchH------HHHHH-HhccCCCCCEEECCCCcCcchHHHHHHHHhc--C
Confidence            55332    2333444 78888888887664100      00111 00223447777774  11      1111 11  3


Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .+|+.|+|++|.++..+..   .....-++|++|++++|+|+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCCccC
Confidence            5778888888877764410   01112367888888888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.70  E-value=1.6e-08  Score=106.70  Aligned_cols=145  Identities=21%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      +.++++|++|+|++|.+....-      +..    -..++.|.+..+.+ +    ..     ..+...++|+.|+|++|.
T Consensus        61 l~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l-~----~l-----~~l~~l~~L~~L~Ls~N~  120 (605)
T 1m9s_A           61 IQYLPNVTKLFLNGNKLTDIKP------LTN----LKNLGWLFLDENKI-K----DL-----SSLKDLKKLKSLSLEHNG  120 (605)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCC-C----CC-----TTSTTCTTCCEEECTTSC
T ss_pred             HccCCCCCEEEeeCCCCCCChh------hcc----CCCCCEEECcCCCC-C----CC-----hhhccCCCCCEEEecCCC
Confidence            3455789999999998865322      111    13478888888887 4    11     146778999999999999


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCcee
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQ  376 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq  376 (414)
                      +.+-      ..+...+ +|++|+|++|.|++    .      ..+....   +|++|+|+  .+.+  .+..  -.+|+
T Consensus       121 l~~l------~~l~~l~-~L~~L~Ls~N~l~~----l------~~l~~l~---~L~~L~Ls~N~l~~~~~l~~--l~~L~  178 (605)
T 1m9s_A          121 ISDI------NGLVHLP-QLESLYLGNNKITD----I------TVLSRLT---KLDTLSLEDNQISDIVPLAG--LTKLQ  178 (605)
T ss_dssp             CCCC------GGGGGCT-TCSEEECCSSCCCC----C------GGGGSCT---TCSEEECCSSCCCCCGGGTT--CTTCC
T ss_pred             CCCC------ccccCCC-ccCEEECCCCccCC----c------hhhcccC---CCCEEECcCCcCCCchhhcc--CCCCC
Confidence            9873      4566777 99999999999998    2      2444334   49999995  2211  1334  57899


Q ss_pred             EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .|+|++|.|++.      ..+..-++|++|+|++|+|
T Consensus       179 ~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          179 NLYLSKNHISDL------RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EEECCSSCCCBC------GGGTTCTTCSEEECCSEEE
T ss_pred             EEECcCCCCCCC------hHHccCCCCCEEEccCCcC
Confidence            999999999985      3477789999999999976

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.70  E-value=4.7e-08  Score=99.45  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=28.6

Q ss_pred             HHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeecccccc
Q 015056          219 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF  269 (414)
Q Consensus       219 ~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~  269 (414)
                      .+... ++|++|+|.++.++...+..+...+..+.     +++|.+..+.+
T Consensus       244 ~l~~l-~~L~~L~L~~~~l~~~~~~~~~~~~~~~~-----L~~L~l~~n~l  288 (562)
T 3a79_B          244 ELTRG-PTLLNVTLQHIETTWKCSVKLFQFFWPRP-----VEYLNIYNLTI  288 (562)
T ss_dssp             HHHSC-SSCEEEEEEEEEECHHHHHHHHHHHTTSS-----EEEEEEEEEEE
T ss_pred             HHhcc-CcceEEEecCCcCcHHHHHHHHHhhhccc-----ccEEEEeccEe
Confidence            44444 47777777777777777776666554433     66666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.69  E-value=1.2e-08  Score=94.60  Aligned_cols=173  Identities=16%  Similarity=0.101  Sum_probs=104.7

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      +|++|.|++. .+....     .-..+.++|++|+|++|. +.......    +.    .--.+++|.+..+.+ +.-  
T Consensus        57 ~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~----~l~~L~~L~l~~n~l-~~~--  120 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDA-----AAFTGLALLEQLDLSDNAQLRSVDPAT----FH----GLGRLHTLHLDRCGL-QEL--  120 (285)
T ss_dssp             TCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSCTTCCCCCTTT----TT----TCTTCCEEECTTSCC-CCC--
T ss_pred             CCCEEECCCCccceeCH-----hhcCCccCCCEEeCCCCCCccccCHHH----hc----CCcCCCEEECCCCcC-CEE--
Confidence            6666666654 221110     112344578888888885 44321111    00    012477777777776 411  


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                           ....+....+|++|+|++|++..-...    .+...+ +|++|+|++|.|++    ..-    .++...   .+|
T Consensus       121 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L  179 (285)
T 1ozn_A          121 -----GPGLFRGLAALQYLYLQDNALQALPDD----TFRDLG-NLTHLFLHGNRISS----VPE----RAFRGL---HSL  179 (285)
T ss_dssp             -----CTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCT-TCCEEECCSSCCCE----ECT----TTTTTC---TTC
T ss_pred             -----CHhHhhCCcCCCEEECCCCcccccCHh----HhccCC-CccEEECCCCcccc----cCH----HHhcCc---ccc
Confidence                 123456678888888888888653321    233344 78888888888886    211    133333   348


Q ss_pred             ceeehH--HHH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          356 RLLNLS--HIA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       356 ~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|+|+  .+.    .++..  -.+|+.|+|++|.++.....    ++..-++|++|++++|.+
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTE----ALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHH----HHTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHH----HcccCcccCEEeccCCCc
Confidence            899885  222    22333  56899999999999986543    445668899999999976

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.68  E-value=4.8e-08  Score=97.32  Aligned_cols=101  Identities=21%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      +....+|+.|+|++|++.+...      +...+ +|++|+|++|.|++.      .    .+.   ++.+|++|+|+  .
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~------~~~l~-~L~~L~L~~n~l~~~------~----~~~---~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP------LAGLT-ALTNLELNENQLEDI------S----PIS---NLKNLTYLTLYFNN  320 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG------GTTCT-TCSEEECCSSCCSCC------G----GGG---GCTTCSEEECCSSC
T ss_pred             hhcCCCCCEEECCCCccCcccc------ccCCC-ccCeEEcCCCcccCc------h----hhc---CCCCCCEEECcCCc
Confidence            4445555666666665554332      22333 566666666665551      0    122   23346667663  1


Q ss_pred             HHh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          363 IAA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       363 l~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +.+  ....  -.+|++|++++|.+++.      ..+..-++|++|++++|+|
T Consensus       321 l~~~~~~~~--l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          321 ISDISPVSS--LTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CSCCGGGGG--CTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCC
T ss_pred             CCCchhhcc--CccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCcc
Confidence            111  1222  45667777777776664      2344556677777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.68  E-value=7.6e-09  Score=95.50  Aligned_cols=179  Identities=17%  Similarity=0.096  Sum_probs=109.1

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      -+|+.|.|++. .+...     ....++.++|++|+|++|.+.......+    .    .--.++.|.+..+.+ +.-+.
T Consensus        52 ~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~l~~n~l-~~~~~  117 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAF----S----GLSSLQKLVAVETNL-ASLEN  117 (276)
T ss_dssp             TTCSEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTTT----T----TCTTCCEEECTTSCC-CCSTT
T ss_pred             cCCcEEECCCCcCCccC-----HHHccCCcCCCEEECCCCccCccChhhh----c----CCccccEEECCCCCc-cccCc
Confidence            36777777665 22111     0112445689999999998765332211    1    113577888877776 31111


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCc
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                             ..+...++|++|+|++|.+......   ..+...+ +|++|+|++|.|++    ....    ++....++..|
T Consensus       118 -------~~~~~l~~L~~L~l~~n~l~~~~l~---~~~~~l~-~L~~L~Ls~N~l~~----~~~~----~~~~l~~L~~l  178 (276)
T 2z62_A          118 -------FPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLT-NLEHLDLSSNKIQS----IYCT----DLRVLHQMPLL  178 (276)
T ss_dssp             -------CCCTTCTTCCEEECCSSCCCCCCCC---GGGGGCT-TCCEEECCSSCCCE----ECGG----GGHHHHTCTTC
T ss_pred             -------hhcccCCCCCEEECcCCccceecCc---hhhccCC-CCCEEECCCCCCCc----CCHH----Hhhhhhhcccc
Confidence                   1256678999999999998753211   1334445 89999999999997    3232    23222332223


Q ss_pred             c-eeehH--HH---HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          356 R-LLNLS--HI---AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       356 ~-~LnLs--~l---~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      . +|+|+  .+   ......  ..+|+.|+|++|.++....    .++...++|++|++++|.+.
T Consensus       179 ~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          179 NLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCT----TTTTTCCSCCEEECCSSCBC
T ss_pred             ceeeecCCCcccccCccccC--CCcccEEECCCCceeecCH----hHhcccccccEEEccCCccc
Confidence            3 66664  22   111222  4589999999999997543    34566789999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.67  E-value=1.4e-08  Score=94.16  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=100.3

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      .+.++|++|+|++|.+......    ++..    --.+++|.+..+. + +.    ..   ...+....+|+.|+|++|.
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~----~~~~----l~~L~~L~l~~n~~l-~~----~~---~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAA----AFTG----LALLEQLDLSDNAQL-RS----VD---PATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT----TTTT----CTTCCEEECCSCTTC-CC----CC---TTTTTTCTTCCEEECTTSC
T ss_pred             ccCCCCCEEECCCCccceeCHh----hcCC----ccCCCEEeCCCCCCc-cc----cC---HHHhcCCcCCCEEECCCCc
Confidence            4556899999999987653221    1111    1247788888775 4 31    10   2345667899999999998


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCc
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTS  374 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~  374 (414)
                      +..-..    ..+...+ +|++|+|++|.|++    ..-    .++....   +|++|+|+  .+..    ++.+  -.+
T Consensus       117 l~~~~~----~~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~--l~~  178 (285)
T 1ozn_A          117 LQELGP----GLFRGLA-ALQYLYLQDNALQA----LPD----DTFRDLG---NLTHLFLHGNRISSVPERAFRG--LHS  178 (285)
T ss_dssp             CCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCEECTTTTTT--CTT
T ss_pred             CCEECH----hHhhCCc-CCCEEECCCCcccc----cCH----hHhccCC---CccEEECCCCcccccCHHHhcC--ccc
Confidence            875432    2234445 89999999999987    211    2343333   48888885  2221    2233  468


Q ss_pred             eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+.|+|++|.++.....    ++...++|++|++++|+|+
T Consensus       179 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCS
T ss_pred             cCEEECCCCcccccCHh----HccCcccccEeeCCCCcCC
Confidence            89999999998876533    3455678999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.67  E-value=1.4e-08  Score=94.73  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+..-.      .+..    -.+++.|.+..+.+ +    ..+.     +...++|+.|+|++|++.+-
T Consensus        41 ~~L~~L~l~~n~i~~l~------~l~~----l~~L~~L~L~~N~i-~----~~~~-----l~~l~~L~~L~L~~N~l~~l  100 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA------GMQF----FTNLKELHLSHNQI-S----DLSP-----LKDLTKLEELSVNRNRLKNL  100 (263)
T ss_dssp             TTCSEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCC-C----CCGG-----GTTCSSCCEEECCSSCCSCC
T ss_pred             CcCcEEECcCCCcccch------HHhh----CCCCCEEECCCCcc-C----CChh-----hccCCCCCEEECCCCccCCc
Confidence            57777777777665421      1111    12466777776666 4    1221     66778899999999988763


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~L~L  380 (414)
                      .      .+..  -.|++|+|++|.|++    .      ..+...   .+|++|+|+  .+.  ..+..  -.+|+.|+|
T Consensus       101 ~------~~~~--~~L~~L~L~~N~l~~----~------~~l~~l---~~L~~L~Ls~N~i~~~~~l~~--l~~L~~L~L  157 (263)
T 1xeu_A          101 N------GIPS--ACLSRLFLDNNELRD----T------DSLIHL---KNLEILSIRNNKLKSIVMLGF--LSKLEVLDL  157 (263)
T ss_dssp             T------TCCC--SSCCEEECCSSCCSB----S------GGGTTC---TTCCEEECTTSCCCBCGGGGG--CTTCCEEEC
T ss_pred             C------cccc--CcccEEEccCCccCC----C------hhhcCc---ccccEEECCCCcCCCChHHcc--CCCCCEEEC
Confidence            2      2222  488899999998887    1      123333   348888885  111  23444  578899999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|.+++.      ..+...++|+.|++++|.+
T Consensus       158 ~~N~i~~~------~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          158 HGNEITNT------GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTSCCCBC------TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCcCcch------HHhccCCCCCEEeCCCCcc
Confidence            99999887      4567778899999988875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.66  E-value=1.1e-08  Score=104.02  Aligned_cols=35  Identities=23%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCCh
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSP  239 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~  239 (414)
                      +|+.|.|++. .+....       ..+.++|++|+|++|.+..
T Consensus        59 ~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~   94 (487)
T 3oja_A           59 KLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQE   94 (487)
T ss_dssp             TCCEEECTTSCCEEEEE-------CTTCTTCCEEECCSSEEEE
T ss_pred             CCCEEEeeCCCCCCCcc-------cccCCCCCEEEecCCcCCC
Confidence            5666666655 221110       3444577777777776643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.66  E-value=2.1e-08  Score=91.92  Aligned_cols=17  Identities=18%  Similarity=0.086  Sum_probs=11.0

Q ss_pred             CCCCCcEEEcccCCCCh
Q 015056          223 NSETLASLEFLHCKLSP  239 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~  239 (414)
                      +.++|++|+|++|.+..
T Consensus        57 ~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A           57 GLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             TCTTCCEEECTTSCCCC
T ss_pred             CcccCCEEECCCCcCCc
Confidence            44577777777776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.65  E-value=2.5e-08  Score=94.66  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhh
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAAS  366 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~a  366 (414)
                      .+|+.|+|++|.+......       ..+ +|++|+|++|.|++    ...    .++..   +.+|++|+|+  .+.+.
T Consensus        99 ~~L~~L~l~~n~l~~~~~~-------~~~-~L~~L~l~~N~l~~----~~~----~~~~~---l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS-------RGQ-GKKNIYLANNKITM----LRD----LDEGC---RSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC-------CCS-SCEEEECCSSCCCS----GGG----BCTGG---GSSEEEEECTTSCCCEE
T ss_pred             CCcCEEECCCCccCCcCcc-------ccC-CCCEEECCCCCCCC----ccc----hhhhc---cCCCCEEECCCCCCCcc
Confidence            5666666666666543321       112 56777777777765    111    12322   2347778774  22211


Q ss_pred             ccccC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          367 LGKFF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       367 gvk~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ....+   -.+|+.|+|++|.++....      ...-++|++|++++|+|+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCccccc------ccccccCCEEECCCCcCC
Confidence            11111   2578888888888876521      123577888888888774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.65  E-value=3.2e-08  Score=99.18  Aligned_cols=165  Identities=15%  Similarity=0.092  Sum_probs=83.6

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~  302 (414)
                      +.++|++|+|++|.+........-..-.-     -.++.|.+..+.+ +    ..+ .....+....+|+.|+|++|++.
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l-~----~~~-~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAW-----PSLQTLVLSQNHL-R----SMQ-KTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSS-----TTCCEEECTTSCC-C----CHH-HHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhcc-----ccCcEEEccCCcc-c----ccc-cchhhhhcCCCCCEEECCCCCCc
Confidence            34577777777777765433211000011     1366666766665 3    111 12244666677777777777665


Q ss_pred             chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhh--hhcC------cccCCcceeehH-----HHHhhccc
Q 015056          303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFS--LGAG------KSLQSLRLLNLS-----HIAASLGK  369 (414)
Q Consensus       303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~a--L~~n------ks~~~L~~LnLs-----~l~~agvk  369 (414)
                      .-     -..+...+ +|++|+|++|.|++.-... -..+ ..  |..|      .++.+|++|+|+     .+-+ .+.
T Consensus       401 ~l-----p~~~~~~~-~L~~L~Ls~N~l~~l~~~~-~~~L-~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~  471 (549)
T 2z81_A          401 PM-----PDSCQWPE-KMRFLNLSSTGIRVVKTCI-PQTL-EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASL  471 (549)
T ss_dssp             CC-----CSCCCCCT-TCCEEECTTSCCSCCCTTS-CTTC-SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGG
T ss_pred             cC-----Chhhcccc-cccEEECCCCCcccccchh-cCCc-eEEECCCCChhhhcccCChhcEEECCCCccCcCCC-ccc
Confidence            21     11222233 5666666666655300000 0000 00  0000      123457777774     2211 122


Q ss_pred             cCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       370 ~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                        -.+|+.|+|++|.++...    ...+..-++|++|++++|++
T Consensus       472 --l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          472 --FPVLLVMKISRNQLKSVP----DGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             --CTTCCEEECCSSCCCCCC----TTGGGGCTTCCEEECCSSCB
T ss_pred             --CccCCEEecCCCccCCcC----HHHHhcCcccCEEEecCCCc
Confidence              467888888888887532    22355667888888888875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.65  E-value=2.9e-08  Score=92.15  Aligned_cols=154  Identities=17%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+....      .+..-    -.++.|.+..+.+ +.    .+   ..++....+|+.|+|++|++
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~------~l~~l----~~L~~L~L~~n~l-~~----~~---~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDIS------ALKEL----TNLTYLILTGNQL-QS----LP---NGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCG------GGTTC----TTCCEEECTTSCC-CC----CC---TTTTTTCTTCCEEECTTSCC
T ss_pred             ccCCCCcEEECCCCCCCCch------hhcCC----CCCCEEECCCCcc-Cc----cC---hhHhcCCcCCCEEECCCCcC
Confidence            44568999999999886521      22221    2488888888877 41    11   22356678999999999998


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~  377 (414)
                      ..-...    .+...+ +|++|+|++|.|++    ..-    ..+...   .+|++|+|+  .+.+.....+  -.+|+.
T Consensus       122 ~~~~~~----~~~~l~-~L~~L~L~~n~l~~----~~~----~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          122 QSLPDG----VFDKLT-NLTYLNLAHNQLQS----LPK----GVFDKL---TNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             CCCCTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CccCHH----HhccCC-CCCEEECCCCccCc----cCH----HHhccC---ccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            643221    123334 89999999999987    222    133333   348899995  2222111111  478999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |+|++|.++....    .++...++|++|++++|.+
T Consensus       186 L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          186 LRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             EECCSSCCSCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCccCH----HHHhCCcCCCEEEccCCCc
Confidence            9999999986443    3456678999999999976

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.63  E-value=1.1e-08  Score=95.67  Aligned_cols=154  Identities=21%  Similarity=0.240  Sum_probs=93.2

Q ss_pred             CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056          224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  303 (414)
Q Consensus       224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d  303 (414)
                      .++|++|+|++|.+..-     -..+.    .--.+++|.+..+.+ +.-+.      ...+....+|+.|+|++|.+..
T Consensus        77 ~~~L~~L~Ls~n~i~~l-----~~~~~----~l~~L~~L~l~~n~l-~~~~~------~~~~~~l~~L~~L~l~~n~l~~  140 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITM-----SSNFL----GLEQLEHLDFQHSNL-KQMSE------FSVFLSLRNLIYLDISHTHTRV  140 (306)
T ss_dssp             CSCCCEEECCSCSEEEE-----EEEEE----TCTTCCEEECTTSEE-ESSTT------TTTTTTCTTCCEEECTTSCCEE
T ss_pred             ccccCEEECCCCccccC-----hhhcC----CCCCCCEEECCCCcc-ccccc------chhhhhccCCCEEECCCCcCCc
Confidence            35778888877765421     01111    113467777776665 31100      1345667788888888888754


Q ss_pred             hhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCceeE
Q 015056          304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSVQV  377 (414)
Q Consensus       304 ~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~Lq~  377 (414)
                      ....    .+...+ +|++|+|++|.|++..       ....+..   +.+|++|+|+  .+.    +++..  -.+|++
T Consensus       141 ~~~~----~~~~l~-~L~~L~l~~n~l~~~~-------~~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~  203 (306)
T 2z66_A          141 AFNG----IFNGLS-SLEVLKMAGNSFQENF-------LPDIFTE---LRNLTFLDLSQCQLEQLSPTAFNS--LSSLQV  203 (306)
T ss_dssp             CSTT----TTTTCT-TCCEEECTTCEEGGGE-------ECSCCTT---CTTCCEEECTTSCCCEECTTTTTT--CTTCCE
T ss_pred             cchh----hcccCc-CCCEEECCCCcccccc-------chhHHhh---CcCCCEEECCCCCcCCcCHHHhcC--CCCCCE
Confidence            3322    123334 7888888888887510       1123323   3448899985  222    22333  478999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+|++|.+++.....    +...++|++||+++|+|.
T Consensus       204 L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          204 LNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             EECTTSCCSBCCSGG----GTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccCccChhh----ccCcccCCEeECCCCCCc
Confidence            999999998755432    456688999999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.62  E-value=5.7e-08  Score=92.94  Aligned_cols=43  Identities=2%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ...++.++|+.+.+++.+...+...+...++|++||+++|+|+
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence            3445666666666777777788888888889999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.61  E-value=1.3e-07  Score=94.27  Aligned_cols=37  Identities=14%  Similarity=0.026  Sum_probs=24.1

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      -.+|+.|+|++|.+++...      +..-++|++|++++|.|+
T Consensus       308 l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          308 LKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccC
Confidence            4567777777777766542      445567777777777653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.61  E-value=1.1e-07  Score=89.89  Aligned_cols=160  Identities=18%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~  302 (414)
                      +.++|++|+|++|.+..-..           ..--++++|.+..+.+ +    ..   ....+....+|+.|+|++|.+.
T Consensus        98 ~l~~L~~L~Ls~n~l~~l~~-----------~~~~~L~~L~l~~n~l-~----~~---~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKELPE-----------KMPKTLQELRVHENEI-T----KV---RKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             TCTTCCEEECCSSCCSBCCS-----------SCCTTCCEEECCSSCC-C----BB---CHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCCccCh-----------hhcccccEEECCCCcc-c----cc---CHhHhcCCccccEEECCCCcCC
Confidence            44567777777776642110           0012466666666655 3    11   1234555666777777777665


Q ss_pred             chhHHHHHHHhccCCCCccEEeccCCCCCCccccc----------CCC---ChhhhhhcCcccCCcceeehH--HHHh--
Q 015056          303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY----------DRS---GPLFSLGAGKSLQSLRLLNLS--HIAA--  365 (414)
Q Consensus       303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~----------~c~---~ls~aL~~nks~~~L~~LnLs--~l~~--  365 (414)
                      ..+...  ..+...+ +|++|+|++|.|++.-...          .+.   ....++..   +.+|++|+|+  .+.+  
T Consensus       159 ~~~~~~--~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          159 SSGIEN--GAFQGMK-KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG---LNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             GGGBCT--TGGGGCT-TCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTT---CTTCCEEECCSSCCCEEC
T ss_pred             ccCcCh--hhccCCC-CcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcC---CCCCCEEECCCCcCceeC
Confidence            432211  1222223 4555555555554300000          000   00123322   3347777774  2211  


Q ss_pred             --hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 --SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 --agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                        ++..  -.+|++|+|++|.++.     +...+...++|++|++++|+|+
T Consensus       233 ~~~~~~--l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          233 NGSLAN--TPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             TTTGGG--STTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCC
T ss_pred             hhhccC--CCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCC
Confidence              2223  4577888888888773     3334566778888888888774

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.60  E-value=9.7e-08  Score=97.15  Aligned_cols=44  Identities=34%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ....+|+.|+|++|++..-.  .+...+...+ +|++|+|++|.|++
T Consensus       374 ~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~-~L~~L~l~~N~l~~  417 (562)
T 3a79_B          374 STLKRLQTLILQRNGLKNFF--KVALMTKNMS-SLETLDVSLNSLNS  417 (562)
T ss_dssp             CSCSSCCEEECCSSCCCBTT--HHHHTTTTCT-TCCEEECTTSCCBS
T ss_pred             cccCCCCEEECCCCCcCCcc--cchhhhcCCC-CCCEEECCCCcCCC
Confidence            44455666666666654311  1112233333 56666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.59  E-value=1.1e-07  Score=100.31  Aligned_cols=141  Identities=19%  Similarity=0.173  Sum_probs=105.9

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+..-.      .+..-    -+++.|.+..+.+ +    ..+.     +...++|+.|+|++|.+.+-
T Consensus        43 ~~L~~L~l~~n~i~~l~------~l~~l----~~L~~L~Ls~N~l-~----~~~~-----l~~l~~L~~L~Ls~N~l~~l  102 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ------GIQYL----PNVTKLFLNGNKL-T----DIKP-----LTNLKNLGWLFLDENKIKDL  102 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT------TGGGC----TTCCEEECTTSCC-C----CCGG-----GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEECcCCCCCCCh------HHccC----CCCCEEEeeCCCC-C----CChh-----hccCCCCCEEECcCCCCCCC
Confidence            68999999999876531      12221    3488999998887 4    2222     78899999999999999872


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEE
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLN  379 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~  379 (414)
                            ..+...+ .|++|+|++|.|++    .      ..+..   +.+|++|+|+     .+ ..+..  -.+|+.|+
T Consensus       103 ------~~l~~l~-~L~~L~Ls~N~l~~----l------~~l~~---l~~L~~L~Ls~N~l~~l-~~l~~--l~~L~~L~  159 (605)
T 1m9s_A          103 ------SSLKDLK-KLKSLSLEHNGISD----I------NGLVH---LPQLESLYLGNNKITDI-TVLSR--LTKLDTLS  159 (605)
T ss_dssp             ------TTSTTCT-TCCEEECTTSCCCC----C------GGGGG---CTTCSEEECCSSCCCCC-GGGGS--CTTCSEEE
T ss_pred             ------hhhccCC-CCCEEEecCCCCCC----C------ccccC---CCccCEEECCCCccCCc-hhhcc--cCCCCEEE
Confidence                  2556666 99999999999998    2      23433   3459999995     22 33444  67899999


Q ss_pred             eecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          380 IGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       380 L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|.+++...      +..-++|++|+|++|+|+
T Consensus       160 Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          160 LEDNQISDIVP------LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             CCSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred             CcCCcCCCchh------hccCCCCCEEECcCCCCC
Confidence            99999998643      667789999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.57  E-value=5.8e-08  Score=91.83  Aligned_cols=176  Identities=22%  Similarity=0.210  Sum_probs=104.7

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|++|.++.. .+...     .....+.++|++|++++|.+...++..  +++..    -..++.|.+..+.+ +.    
T Consensus       122 ~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~~----l~~L~~L~l~~n~l-~~----  185 (330)
T 1xku_A          122 TLQELRVHENEITKVR-----KSVFNGLNQMIVVELGTNPLKSSGIEN--GAFQG----MKKLSYIRIADTNI-TT----  185 (330)
T ss_dssp             TCCEEECCSSCCCBBC-----HHHHTTCTTCCEEECCSSCCCGGGBCT--TGGGG----CTTCCEEECCSSCC-CS----
T ss_pred             cccEEECCCCcccccC-----HhHhcCCccccEEECCCCcCCccCcCh--hhccC----CCCcCEEECCCCcc-cc----
Confidence            5666666654 22111     122345568888888888776533220  11111    13477777777766 42    


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  356 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~  356 (414)
                      .+..+      ..+|+.|+|++|++......    .+...+ +|++|+|++|.|++    ..-    .++....   +|+
T Consensus       186 l~~~~------~~~L~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l~---~L~  243 (330)
T 1xku_A          186 IPQGL------PPSLTELHLDGNKITKVDAA----SLKGLN-NLAKLGLSFNSISA----VDN----GSLANTP---HLR  243 (330)
T ss_dssp             CCSSC------CTTCSEEECTTSCCCEECTG----GGTTCT-TCCEEECCSSCCCE----ECT----TTGGGST---TCC
T ss_pred             CCccc------cccCCEEECCCCcCCccCHH----HhcCCC-CCCEEECCCCcCce----eCh----hhccCCC---CCC
Confidence            22111      26788888888888765332    233444 78888888888887    211    1333333   488


Q ss_pred             eeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHH--hcCCCCcEEecCCCCC
Q 015056          357 LLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV--TKELKLVNINIRFKPI  413 (414)
Q Consensus       357 ~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL--~~N~~L~~LdLs~N~i  413 (414)
                      +|+|+     .+...+..  ..+|+.|+|++|.++..+..+++...  ....+|+.|++++|.+
T Consensus       244 ~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          244 ELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             EEECCSSCCSSCCTTTTT--CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             EEECCCCcCccCChhhcc--CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            88884     33333333  57788888888888887766654332  2346788888888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=2.9e-08  Score=100.79  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|+.|.|++. .+....     .-..+.++|++|+|++|.+....-      +..    --.++.|.+..+.+ +    .
T Consensus        35 ~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l-~----~   94 (487)
T 3oja_A           35 NVKELDLSGNPLSQISA-----ADLAPFTKLELLNLSSNVLYETLD------LES----LSTLRTLDLNNNYV-Q----E   94 (487)
T ss_dssp             GCCEEECCSSCCCCCCG-----GGGTTCTTCCEEECTTSCCEEEEE------CTT----CTTCCEEECCSSEE-E----E
T ss_pred             CccEEEeeCCcCCCCCH-----HHHhCCCCCCEEEeeCCCCCCCcc------ccc----CCCCCEEEecCCcC-C----C
Confidence            5666666665 221110     112344577777777776653210      111    12366666666665 3    1


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  356 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~  356 (414)
                      .+        ...+|+.|+|++|.+..-...       ..+ +|++|+|++|.|++    ..-    .++..   +.+|+
T Consensus        95 l~--------~~~~L~~L~L~~N~l~~~~~~-------~l~-~L~~L~L~~N~l~~----~~~----~~~~~---l~~L~  147 (487)
T 3oja_A           95 LL--------VGPSIETLHAANNNISRVSCS-------RGQ-GKKNIYLANNKITM----LRD----LDEGC---RSRVQ  147 (487)
T ss_dssp             EE--------ECTTCCEEECCSSCCCCEEEC-------CCS-SCEEEECCSSCCCS----GGG----BCGGG---GSSEE
T ss_pred             CC--------CCCCcCEEECcCCcCCCCCcc-------ccC-CCCEEECCCCCCCC----CCc----hhhcC---CCCCC
Confidence            11        226777777777777654321       112 67777777777776    111    13332   23488


Q ss_pred             eeehH--HHHh----hcc-ccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          357 LLNLS--HIAA----SLG-KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       357 ~LnLs--~l~~----agv-k~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|+|+  .+..    ... .  -.+|+.|+|++|.++...      .+...++|++|+|++|+|+
T Consensus       148 ~L~Ls~N~l~~~~~~~l~~~--l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          148 YLDLKLNEIDTVNFAELAAS--SDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             EEECTTSCCCEEEGGGGGGG--TTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCCcChHHHhhh--CCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCC
Confidence            88885  2221    121 2  367888888888888752      1224678889999988874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.56  E-value=2.6e-08  Score=94.31  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=96.0

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+..-...          ..--.++.|.+....+ +        .+...+....+|+.|+|++|++
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~----------~~l~~L~~L~Ls~N~l-~--------~l~~~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQVD----------GTLPVLGTLDLSHNQL-Q--------SLPLLGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEECC----------SCCTTCCEEECCSSCC-S--------SCCCCTTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCEEECCCCccCcccCC----------CCCCcCCEEECCCCcC-C--------cCchhhccCCCCCEEECCCCcC
Confidence            4456899999999987653211          1123477788877776 4        1223446678899999999988


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~  377 (414)
                      ..-..    ..+...+ +|++|+|++|+|++    ..-    .++....   +|++|+|+  .+..--...+  -.+|+.
T Consensus       113 ~~l~~----~~~~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l~---~L~~L~L~~N~l~~l~~~~~~~l~~L~~  176 (290)
T 1p9a_G          113 TSLPL----GALRGLG-ELQELYLKGNELKT----LPP----GLLTPTP---KLEKLSLANNNLTELPAGLLNGLENLDT  176 (290)
T ss_dssp             CCCCS----STTTTCT-TCCEEECTTSCCCC----CCT----TTTTTCT---TCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             cccCH----HHHcCCC-CCCEEECCCCCCCc----cCh----hhccccc---CCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence            64321    1123334 88999999999887    222    2333333   48888885  2221111111  467899


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |+|++|.++.     +...+..+.+|++|+|++|.+
T Consensus       177 L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          177 LLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence            9999999884     334455667899999999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.54  E-value=8.1e-08  Score=88.89  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+..-...    .+.    .--.++.|.+..+.+ +.    .+   ..++....+|++|+|++|++
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~----~~~----~l~~L~~L~l~~n~l-~~----~~---~~~~~~l~~L~~L~l~~n~l  121 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAG----IFK----ELKNLETLWVTDNKL-QA----LP---IGVFDQLVNLAELRLDRNQL  121 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTT----TTS----SCTTCCEEECCSSCC-CC----CC---TTTTTTCSSCCEEECCSSCC
T ss_pred             cCCCCCCEEECCCCccCeeChh----hhc----CCCCCCEEECCCCcC-Cc----CC---HhHcccccCCCEEECCCCcc
Confidence            4556899999999987532111    011    113578888887776 41    11   13456678999999999998


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~  377 (414)
                      ..-...    .+...+ +|++|+|++|.|++    ..-    .++...   .+|++|+|+  .+..-....+  -.+|+.
T Consensus       122 ~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          122 KSLPPR----VFDSLT-KLTYLSLGYNELQS----LPK----GVFDKL---TSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             CCCCTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CeeCHH----HhCcCc-CCCEEECCCCcCCc----cCH----hHccCC---cccceeEecCCcCcEeChhHhccCCCcCE
Confidence            764432    133444 89999999999997    222    234333   348999995  2222111112  478999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |+|++|.++.....    ++...++|++|+|++|.+
T Consensus       186 L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          186 LKLDNNQLKRVPEG----AFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EECCSSCCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCcCCHH----HhccccCCCEEEecCCCe
Confidence            99999999865432    345568899999999986

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.52  E-value=1.6e-08  Score=97.22  Aligned_cols=102  Identities=14%  Similarity=0.042  Sum_probs=47.2

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH-
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA-  364 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~-  364 (414)
                      ..+|++|+|++|++..-     -..+...+ +|++|+|++|.|++         +...+....   +|++|+|+  .+. 
T Consensus       182 l~~L~~L~L~~n~l~~l-----p~~l~~l~-~L~~L~L~~N~l~~---------l~~~l~~l~---~L~~L~Ls~n~~~~  243 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSL-----PASIANLQ-NLKSLKIRNSPLSA---------LGPAIHHLP---KLEELDLRGCTALR  243 (328)
T ss_dssp             STTCCEEEEEEECCCCC-----CGGGGGCT-TCCEEEEESSCCCC---------CCGGGGGCT---TCCEEECTTCTTCC
T ss_pred             CCCCCEEECcCCCcCcc-----hHhhcCCC-CCCEEEccCCCCCc---------CchhhccCC---CCCEEECcCCcchh
Confidence            45566666666665411     12233344 56666666666664         111232222   36666663  111 


Q ss_pred             ---hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ---ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ---~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                         ....+  -.+|+.|+|++|.+...--    ..+..-++|++|+|++|++
T Consensus       244 ~~p~~~~~--l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          244 NYPPIFGG--RAPLKRLILKDCSNLLTLP----LDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             BCCCCTTC--CCCCCEEECTTCTTCCBCC----TTGGGCTTCCEEECTTCTT
T ss_pred             hhHHHhcC--CCCCCEEECCCCCchhhcc----hhhhcCCCCCEEeCCCCCc
Confidence               11122  3456666666655443211    1233445566666666553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.52  E-value=6e-08  Score=93.81  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---  361 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---  361 (414)
                      +...++|+.|+|++|++.....    ..+...+ +|++|+|++|.|++.-         ...   ..+.+|++|+|+   
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~---------~~~---~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMY----HPFVKMQ-RLERLYISNNRLVALN---------LYG---QPIPTLKVLDLSHNH  306 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEES----GGGTTCS-SCCEEECCSSCCCEEE---------CSS---SCCTTCCEEECCSSC
T ss_pred             HcCCCCccEEECCCCcCCCcCh----hHccccc-cCCEEECCCCcCcccC---------ccc---CCCCCCCEEECCCCc
Confidence            4445555555555555543321    1222333 5555555555555410         011   122346666663   


Q ss_pred             --HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 --HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 --~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                        .+......  -.+|+.|+|++|.+++..       +...++|++|++++|++
T Consensus       307 l~~~~~~~~~--l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          307 LLHVERNQPQ--FDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCCCGGGHHH--HTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSCE
T ss_pred             ceecCccccc--cCcCCEEECCCCccceeC-------chhhccCCEEEcCCCCc
Confidence              12111222  355666667666666653       44556677777777764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.52  E-value=1.4e-07  Score=87.33  Aligned_cols=152  Identities=16%  Similarity=0.154  Sum_probs=103.2

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|+|++|.+..-...    ++.    .--.+++|.+..+.+ +    ..+   ..++....+|+.|+|++|++..-
T Consensus        37 ~~l~~L~l~~n~l~~~~~~----~~~----~l~~L~~L~l~~n~l-~----~i~---~~~~~~l~~L~~L~l~~n~l~~~  100 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSK----AFH----RLTKLRLLYLNDNKL-Q----TLP---AGIFKELKNLETLWVTDNKLQAL  100 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTT----SSS----SCTTCCEEECCSSCC-S----CCC---TTTTSSCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEECcCCCCCeeCHH----Hhc----CCCCCCEEECCCCcc-C----eeC---hhhhcCCCCCCEEECCCCcCCcC
Confidence            4799999999988653211    111    113588888887776 4    122   23346678999999999999754


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCceeEE
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTSVQVL  378 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~Lq~L  378 (414)
                      ...    .+...+ +|++|+|++|.|++    ..-    .++..   +.+|++|+|+  .+..    ++.+  -.+|+.|
T Consensus       101 ~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L  162 (270)
T 2o6q_A          101 PIG----VFDQLV-NLAELRLDRNQLKS----LPP----RVFDS---LTKLTYLSLGYNELQSLPKGVFDK--LTSLKEL  162 (270)
T ss_dssp             CTT----TTTTCS-SCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTT--CTTCCEE
T ss_pred             CHh----Hccccc-CCCEEECCCCccCe----eCH----HHhCc---CcCCCEEECCCCcCCccCHhHccC--Cccccee
Confidence            321    223344 89999999999997    222    23433   3459999995  2221    1233  5789999


Q ss_pred             EeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          379 NIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       379 ~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|++|.++.....    ++..-++|++|+|++|+|.
T Consensus       163 ~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          163 RLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             ECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCS
T ss_pred             EecCCcCcEeChh----HhccCCCcCEEECCCCcCC
Confidence            9999999875543    3455689999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.51  E-value=8.6e-08  Score=88.39  Aligned_cols=155  Identities=16%  Similarity=0.125  Sum_probs=87.0

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+....-.    ++..    --.++.|.+..+.+ +    ...   ...+....+|+.|+|++|.+
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~----~~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIEDG----AYQS----LSHLSTLILTGNPI-Q----SLA---LGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECTT----TTTT----CTTCCEEECTTCCC-C----EEC---TTTTTTCTTCCEEECTTSCC
T ss_pred             ccccCCcEEECCCCcCCccCHH----HccC----CcCCCEEECCCCcc-C----ccC---hhhhcCCccccEEECCCCCc
Confidence            4456888888888877542211    1111    12467777776665 3    111   13345567788888888877


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCce
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSV  375 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~L  375 (414)
                      ..-...    .+.+.+ +|++|+|++|.|++      -. +...+....   +|++|+|+  .+.    .++..  -.++
T Consensus       113 ~~~~~~----~~~~l~-~L~~L~l~~n~l~~------~~-l~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~~~--l~~L  175 (276)
T 2z62_A          113 ASLENF----PIGHLK-TLKELNVAHNLIQS------FK-LPEYFSNLT---NLEHLDLSSNKIQSIYCTDLRV--LHQM  175 (276)
T ss_dssp             CCSTTC----CCTTCT-TCCEEECCSSCCCC------CC-CCGGGGGCT---TCCEEECCSSCCCEECGGGGHH--HHTC
T ss_pred             cccCch----hcccCC-CCCEEECcCCccce------ec-CchhhccCC---CCCEEECCCCCCCcCCHHHhhh--hhhc
Confidence            553221    133334 78888888888776      11 113443333   37777774  111    11111  1223


Q ss_pred             e----EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          376 Q----VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       376 q----~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +    +|++++|.++.....     .....+|++|++++|.|+
T Consensus       176 ~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLK  213 (276)
T ss_dssp             TTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCS
T ss_pred             cccceeeecCCCcccccCcc-----ccCCCcccEEECCCCcee
Confidence            3    778888887764422     223447999999999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.50  E-value=1.3e-08  Score=96.59  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH----
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----  361 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs----  361 (414)
                      ....+|+.|+|++|++.+.....+..   ..+ .|++|+|++|.|++    .  .    ..   ..+.+|++|+|+    
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~---~l~-~L~~L~L~~N~l~~----~--~----~~---~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELAA---SSD-TLEHLNLQYNFIYD----V--K----GQ---VVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGG---GTT-TCCEEECTTSCCCE----E--E----CC---CCCTTCCEEECCSSCC
T ss_pred             hccCCCCEEECCCCCCCcccHHHHhh---ccC-cCCEEECCCCcCcc----c--c----cc---cccccCCEEECCCCcC
Confidence            44566777777777776543322211   123 67777777777766    1  0    01   113347777774    


Q ss_pred             -HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 -HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 -~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                       .+......  -.+|+.|+|++|.++.     +...+...++|++|++++|.+
T Consensus       204 ~~l~~~~~~--l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          204 AFMGPEFQS--AAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CEECGGGGG--GTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred             Ccchhhhcc--cCcccEEECcCCcccc-----hhhHhhcCCCCCEEEccCCCc
Confidence             22222223  4677888888888774     233455667788888888876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.49  E-value=2.8e-07  Score=81.60  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=78.1

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      +....+|+.|+|++|.+.+-.      .+...+ .|++|+|++|.|++    ..-    ..+..   +.+|++|+|+  .
T Consensus        62 l~~l~~L~~L~l~~n~~~~~~------~l~~l~-~L~~L~l~~n~l~~----~~~----~~l~~---l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNYN------PISGLS-NLERLRIMGKDVTS----DKI----PNLSG---LTSLTLLDISHSA  123 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCCG------GGTTCT-TCCEEEEECTTCBG----GGS----CCCTT---CTTCCEEECCSSB
T ss_pred             HhcCCCCCEEEccCCCCCcch------hhhcCC-CCCEEEeECCccCc----ccC----hhhcC---CCCCCEEEecCCc
Confidence            345678999999999886542      456666 99999999999996    111    23333   3459999995  2


Q ss_pred             ----HHhhccccCCCceeEEEeeccc-CCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          363 ----IAASLGKFFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       363 ----l~~agvk~L~c~Lq~L~L~~c~-lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                          ....+.+  -.+|+.|+|++|. +++.-      .+..-++|++|++++|.|+
T Consensus       124 i~~~~~~~l~~--l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          124 HDDSILTKINT--LPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CBGGGHHHHTT--CSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCC
T ss_pred             cCcHhHHHHhh--CCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCc
Confidence                3344445  6889999999998 88862      5778899999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.49  E-value=1.9e-07  Score=93.75  Aligned_cols=156  Identities=16%  Similarity=0.145  Sum_probs=101.4

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      +++++|+|++|.+..-.-.    ++.    .=-++|.|.+..+.+ +    .++   ..++....+|++|+|++|++..-
T Consensus        52 ~~~~~LdLs~N~i~~l~~~----~f~----~l~~L~~L~Ls~N~i-~----~i~---~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSY----SFF----SFPELQVLDLSRCEI-Q----TIE---DGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTCCEEECTTSCCCEECTT----TTT----TCTTCCEEECTTCCC-C----EEC---TTTTTTCTTCCEEECTTCCCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHH----HHh----CCCCCCEEECCCCcC-C----CcC---hhHhcCCCCCCEEEccCCcCCCC
Confidence            4788888888887542110    000    012477888887776 4    222   12456778999999999998653


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH-----HhhccccCCCceeE
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI-----AASLGKFFGTSVQV  377 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l-----~~agvk~L~c~Lq~  377 (414)
                      ...    ++...+ +|++|+|++|.|++    ..-    .++....   +|++|+|+  .+     ......  -.+|+.
T Consensus       116 ~~~----~f~~L~-~L~~L~Ls~N~l~~----l~~----~~~~~L~---~L~~L~Ls~N~l~~~~~~~~~~~--l~~L~~  177 (635)
T 4g8a_A          116 ALG----AFSGLS-SLQKLVAVETNLAS----LEN----FPIGHLK---TLKELNVAHNLIQSFKLPEYFSN--LTNLEH  177 (635)
T ss_dssp             CGG----GGTTCT-TCCEEECTTSCCCC----STT----CCCTTCT---TCCEEECCSSCCCCCCCCGGGGG--CTTCCE
T ss_pred             CHH----HhcCCC-CCCEEECCCCcCCC----CCh----hhhhcCc---ccCeeccccCccccCCCchhhcc--chhhhh
Confidence            221    233445 89999999999997    222    2443334   49999995  22     222333  478999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+|++|.++.....+++..-.....+..++++.|.|+
T Consensus       178 L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          178 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             hcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            9999999988766666554444455678888888763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.48  E-value=2e-07  Score=86.55  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+....      .+..-    -+++.|.+..+.+ +    .    + ..+....+|++|+|++|.+..-
T Consensus        41 ~~L~~L~l~~~~i~~~~------~l~~l----~~L~~L~l~~n~l-~----~----~-~~l~~l~~L~~L~L~~n~l~~~  100 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ------GIQYL----PNVRYLALGGNKL-H----D----I-SALKELTNLTYLILTGNQLQSL  100 (272)
T ss_dssp             TTCCEEECTTSCCCCCT------TGGGC----TTCCEEECTTSCC-C----C----C-GGGTTCTTCCEEECTTSCCCCC
T ss_pred             cceeeeeeCCCCccccc------ccccC----CCCcEEECCCCCC-C----C----c-hhhcCCCCCCEEECCCCccCcc
Confidence            68999999999876422      12111    2488899988887 4    1    1 2567889999999999999753


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L  380 (414)
                      ...    .+...+ +|++|+|++|.|++    ..-    ..+....   +|++|+|+  .+.......+  -.+|+.|+|
T Consensus       101 ~~~----~~~~l~-~L~~L~L~~n~l~~----~~~----~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          101 PNG----VFDKLT-NLKELVLVENQLQS----LPD----GVFDKLT---NLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             CTT----TTTTCT-TCCEEECTTSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             Chh----HhcCCc-CCCEEECCCCcCCc----cCH----HHhccCC---CCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            321    133344 89999999999997    212    2333333   49999995  2222111111  578999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|.++....    .++..-++|++|++++|+|+
T Consensus       165 ~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          165 SYNQLQSLPE----GVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCccCH----HHhcCCccCCEEECCCCcCC
Confidence            9999996543    23455689999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.48  E-value=7.3e-08  Score=91.40  Aligned_cols=156  Identities=22%  Similarity=0.158  Sum_probs=88.4

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|++++|.+...++.       ........++.+.+..+.+ +.    .+..+      ..+|+.|+|++|++
T Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~-------~~~~~~l~L~~L~l~~n~l-~~----l~~~~------~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          144 SGLRNMNCIEMGGNPLENSGFE-------PGAFDGLKLNYLRISEAKL-TG----IPKDL------PETLNELHLDHNKI  205 (332)
T ss_dssp             SSCSSCCEEECCSCCCBGGGSC-------TTSSCSCCCSCCBCCSSBC-SS----CCSSS------CSSCSCCBCCSSCC
T ss_pred             CCCccCCEEECCCCccccCCCC-------cccccCCccCEEECcCCCC-Cc----cCccc------cCCCCEEECCCCcC
Confidence            4556888888888877543221       0011112566777776665 42    22111      15778888888877


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCcee
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQ  376 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq  376 (414)
                      ......    .+...+ +|++|+|++|.|++    ..-    .++....   +|++|+|+     .+...+..  -.+|+
T Consensus       206 ~~~~~~----~l~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l~---~L~~L~L~~N~l~~lp~~l~~--l~~L~  267 (332)
T 2ft3_A          206 QAIELE----DLLRYS-KLYRLGLGHNQIRM----IEN----GSLSFLP---TLRELHLDNNKLSRVPAGLPD--LKLLQ  267 (332)
T ss_dssp             CCCCTT----SSTTCT-TCSCCBCCSSCCCC----CCT----TGGGGCT---TCCEEECCSSCCCBCCTTGGG--CTTCC
T ss_pred             CccCHH----HhcCCC-CCCEEECCCCcCCc----CCh----hHhhCCC---CCCEEECCCCcCeecChhhhc--CccCC
Confidence            654321    233334 77888888888776    111    1333333   37777774     23222333  46677


Q ss_pred             EEEeecccCCchhHHHHHHHHh--cCCCCcEEecCCCCC
Q 015056          377 VLNIGAIGLGSSGFRVLQDGVT--KELKLVNINIRFKPI  413 (414)
Q Consensus       377 ~L~L~~c~lg~~gcqaLa~aL~--~N~~L~~LdLs~N~i  413 (414)
                      .|+|++|.++..+..+++....  ....|++|++++|.+
T Consensus       268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             EEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            7777777777766655544322  245577777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.48  E-value=5.3e-07  Score=90.34  Aligned_cols=14  Identities=36%  Similarity=0.491  Sum_probs=8.0

Q ss_pred             CccEEeccCCCCCC
Q 015056          319 SLSILDLSGNSIGG  332 (414)
Q Consensus       319 ~L~~LdLs~n~Lt~  332 (414)
                      +|++|||++|.|++
T Consensus       388 ~L~~L~Ls~N~l~~  401 (549)
T 2z81_A          388 NLTSLDISRNTFHP  401 (549)
T ss_dssp             TCCEEECTTCCCCC
T ss_pred             CCCEEECCCCCCcc
Confidence            55555565555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.48  E-value=3.9e-08  Score=93.09  Aligned_cols=151  Identities=15%  Similarity=0.103  Sum_probs=100.7

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|+|++|.+..-....+    ..    --.++.|.+..+.+ +    ..+..     ....+|+.|+|++|++..-
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~----~~----l~~L~~L~L~~n~l-~----~~~~~-----~~l~~L~~L~Ls~N~l~~l   92 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATL----MP----YTRLTQLNLDRAEL-T----KLQVD-----GTLPVLGTLDLSHNQLQSL   92 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGG----TT----CTTCCEEECTTSCC-C----EEECC-----SCCTTCCEEECCSSCCSSC
T ss_pred             CCCCEEEcCCCcCCccCHHHh----hc----CCCCCEEECCCCcc-C----cccCC-----CCCCcCCEEECCCCcCCcC
Confidence            478999999998865432211    11    13477888887776 4    12211     4678999999999999632


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L  380 (414)
                      .     ..+...+ +|++|+|++|+|++    ..-    .++....   +|++|+|+  .+..-....+  -.+|+.|+|
T Consensus        93 ~-----~~~~~l~-~L~~L~l~~N~l~~----l~~----~~~~~l~---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           93 P-----LLGQTLP-ALTVLDVSFNRLTS----LPL----GALRGLG---ELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             C-----CCTTTCT-TCCEEECCSSCCCC----CCS----STTTTCT---TCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             c-----hhhccCC-CCCEEECCCCcCcc----cCH----HHHcCCC---CCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            1     1233344 89999999999997    222    2443334   49999995  2222111112  578999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|.++....    .++..-++|++|++++|+|.
T Consensus       156 ~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          156 ANNNLTELPA----GLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTSCCSCCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCH----HHhcCcCCCCEEECCCCcCC
Confidence            9999996432    33456689999999999874

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.47  E-value=1e-07  Score=92.22  Aligned_cols=121  Identities=21%  Similarity=0.176  Sum_probs=84.7

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  337 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~  337 (414)
                      .++.+.+..+.+ +    ..+.      ....+|+.|+|++|++.+.      ..+...+ +|++|+|++|.|++    .
T Consensus       206 ~L~~L~l~~n~l-~----~~~~------~~~~~L~~L~l~~n~l~~~------~~l~~l~-~L~~L~Ls~n~l~~----~  263 (390)
T 3o6n_A          206 AVEELDASHNSI-N----VVRG------PVNVELTILKLQHNNLTDT------AWLLNYP-GLVEVDLSYNELEK----I  263 (390)
T ss_dssp             SCSEEECCSSCC-C----EEEC------CCCSSCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCE----E
T ss_pred             cceEEECCCCee-e----eccc------cccccccEEECCCCCCccc------HHHcCCC-CccEEECCCCcCCC----c
Confidence            477777777766 4    1111      2247899999999999875      3566666 99999999999997    2


Q ss_pred             CCCChhhhhhcCcccCCcceeehH--HH---HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS--HI---AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs--~l---~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      .    ..++....   +|++|+|+  .+   ......  -.+|++|+|++|.++...     ..+..-++|++|++++|+
T Consensus       264 ~----~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~--l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          264 M----YHPFVKMQ---RLERLYISNNRLVALNLYGQP--IPTLKVLDLSHNHLLHVE-----RNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             E----SGGGTTCS---SCCEEECCSSCCCEEECSSSC--CTTCCEEECCSSCCCCCG-----GGHHHHTTCSEEECCSSC
T ss_pred             C----hhHccccc---cCCEEECCCCcCcccCcccCC--CCCCCEEECCCCcceecC-----ccccccCcCCEEECCCCc
Confidence            1    13444444   49999995  22   111222  478999999999998532     223445889999999999


Q ss_pred             CC
Q 015056          413 IS  414 (414)
Q Consensus       413 i~  414 (414)
                      |+
T Consensus       330 i~  331 (390)
T 3o6n_A          330 IV  331 (390)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.47  E-value=4.8e-08  Score=91.20  Aligned_cols=176  Identities=20%  Similarity=0.189  Sum_probs=109.6

Q ss_pred             cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056          196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  274 (414)
Q Consensus       196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~  274 (414)
                      -.+|+.|.|++. .+..     ... ..+.++|++|++++|.+......   ..+..    --.++.|.+..+.+ +.  
T Consensus        77 ~~~L~~L~Ls~n~i~~l-----~~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~~----l~~L~~L~l~~n~l-~~--  140 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITM-----SSN-FLGLEQLEHLDFQHSNLKQMSEF---SVFLS----LRNLIYLDISHTHT-RV--  140 (306)
T ss_dssp             CSCCCEEECCSCSEEEE-----EEE-EETCTTCCEEECTTSEEESSTTT---TTTTT----CTTCCEEECTTSCC-EE--
T ss_pred             ccccCEEECCCCccccC-----hhh-cCCCCCCCEEECCCCcccccccc---hhhhh----ccCCCEEECCCCcC-Cc--
Confidence            346777777665 2211     111 34456999999999987653220   01111    13477888887776 31  


Q ss_pred             cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                           .....+....+|+.|+|++|.+.+....   ..+...+ +|++|+|++|.|++    ..-    .++...   .+
T Consensus       141 -----~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~~l---~~  200 (306)
T 2z66_A          141 -----AFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELR-NLTFLDLSQCQLEQ----LSP----TAFNSL---SS  200 (306)
T ss_dssp             -----CSTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCT-TCCEEECTTSCCCE----ECT----TTTTTC---TT
T ss_pred             -----cchhhcccCcCCCEEECCCCccccccch---hHHhhCc-CCCEEECCCCCcCC----cCH----HHhcCC---CC
Confidence                 1233456678999999999988652111   1233344 89999999999987    211    234333   34


Q ss_pred             cceeehH--HHHh----hccccCCCceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCC
Q 015056          355 LRLLNLS--HIAA----SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPI  413 (414)
Q Consensus       355 L~~LnLs--~l~~----agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i  413 (414)
                      |++|+|+  .+.+    ....  -.+|+.|+|++|.++......+    ..- ++|++|++++|.+
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~----~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQEL----QHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTT--CTTCCEEECTTSCCCBCSSSSC----CCCCTTCCEEECTTCCE
T ss_pred             CCEEECCCCccCccChhhccC--cccCCEeECCCCCCcccCHHHH----HhhhccCCEEEccCCCe
Confidence            8999995  2222    2222  4789999999999987654332    333 4899999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.44  E-value=1.6e-07  Score=89.11  Aligned_cols=160  Identities=16%  Similarity=0.105  Sum_probs=87.2

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+..-..           ...-++++|.+..+.+ +.    .+   ..++...++|+.|+|++|++
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~-----------~~~~~L~~L~l~~n~i-~~----~~---~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPP-----------NLPSSLVELRIHDNRI-RK----VP---KGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCS-----------SCCTTCCEEECCSSCC-CC----CC---SGGGSSCSSCCEEECCSCCC
T ss_pred             hCcCCCCEEECCCCcCCccCc-----------cccccCCEEECCCCcc-Cc----cC---HhHhCCCccCCEEECCCCcc
Confidence            344577777777776652110           0013477777776665 31    11   12355677888888888887


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccC----------CC---ChhhhhhcCcccCCcceeehH--HHH--
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD----------RS---GPLFSLGAGKSLQSLRLLNLS--HIA--  364 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~----------c~---~ls~aL~~nks~~~L~~LnLs--~l~--  364 (414)
                      .+.+...  ..+.. . .|++|++++|.|++.-....          +.   ....++.   .+.+|++|+|+  .+.  
T Consensus       160 ~~~~~~~--~~~~~-l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          160 ENSGFEP--GAFDG-L-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             BGGGSCT--TSSCS-C-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST---TCTTCSCCBCCSSCCCCC
T ss_pred             ccCCCCc--ccccC-C-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc---CCCCCCEEECCCCcCCcC
Confidence            5432211  11111 1 44455555554443000000          00   0001232   23458888884  222  


Q ss_pred             --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                        ++...  -.+|+.|+|++|.++.     +...+...++|++|++++|+|+
T Consensus       233 ~~~~~~~--l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          233 ENGSLSF--LPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CTTGGGG--CTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCC
T ss_pred             ChhHhhC--CCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCC
Confidence              12333  5789999999999984     3334677889999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.44  E-value=6.7e-08  Score=95.55  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+|+.|+|++|.++.....    ++..-++|++|+|++|.+
T Consensus       255 ~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECCSSCE
T ss_pred             CCCCEEECCCCCCCccChh----HhccccCCCEEEcCCCCc
Confidence            5566666666666653322    223345666666666653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.44  E-value=2.2e-07  Score=85.05  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|+|++|.+....-..    +..    --++++|.+..+.+ +.    .   ....+....+|+.|+|++|++..-
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~----~~~----l~~L~~L~L~~n~l-~~----~---~~~~~~~l~~L~~L~L~~n~l~~~   98 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDAT----FRG----LTKLTWLNLDYNQL-QT----L---SAGVFDDLTELGTLGLANNQLASL   98 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTT----TTT----CTTCCEEECTTSCC-CC----C---CTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCCCEEEccCCCcCccCHhH----hcC----cccCCEEECCCCcC-Cc----c---CHhHhccCCcCCEEECCCCccccc
Confidence            47999999999886533221    111    13588888888877 41    1   123456678999999999999754


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh----hccccCCCceeEE
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA----SLGKFFGTSVQVL  378 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~----agvk~L~c~Lq~L  378 (414)
                      ...    .+...+ +|++|+|++|.|++    ..-    .++...   .+|++|+|+  .+..    ++.+  -.+|+.|
T Consensus        99 ~~~----~~~~l~-~L~~L~L~~N~l~~----~~~----~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L  160 (251)
T 3m19_A           99 PLG----VFDHLT-QLDKLYLGGNQLKS----LPS----GVFDRL---TKLKELRLNTNQLQSIPAGAFDK--LTNLQTL  160 (251)
T ss_dssp             CTT----TTTTCT-TCCEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCCCTTTTTT--CTTCCEE
T ss_pred             Chh----HhcccC-CCCEEEcCCCcCCC----cCh----hHhccC---CcccEEECcCCcCCccCHHHcCc--CcCCCEE
Confidence            322    223445 89999999999997    222    233333   349999995  2221    2333  4789999


Q ss_pred             EeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          379 NIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       379 ~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|++|.++...-    .++..-++|++|++++|.+.
T Consensus       161 ~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          161 SLSTNQLQSVPH----GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ECCSSCCSCCCT----TTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCH----HHHhCCCCCCEEEeeCCcee
Confidence            999999996543    34556689999999999873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.43  E-value=1.2e-08  Score=97.04  Aligned_cols=174  Identities=16%  Similarity=0.154  Sum_probs=110.4

Q ss_pred             ccccceeeee-c-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056          197 SKLQSLVLRW-I-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  274 (414)
Q Consensus       197 ckLq~L~L~~-~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~  274 (414)
                      -+|+.|.|+. . .+.....    . +.+.++|++|+|++|.+....-..    +..    --.+++|.+..+.+ +   
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~----~-l~~l~~L~~L~Ls~n~l~~~~p~~----~~~----l~~L~~L~Ls~N~l-~---  138 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPP----A-IAKLTQLHYLYITHTNVSGAIPDF----LSQ----IKTLVTLDFSYNAL-S---  138 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCG----G-GGGCTTCSEEEEEEECCEEECCGG----GGG----CTTCCEEECCSSEE-E---
T ss_pred             CCCCeeeCCCCCcccccCCh----h-HhcCCCCCEEECcCCeeCCcCCHH----HhC----CCCCCEEeCCCCcc-C---
Confidence            4788888873 2 2211111    1 245579999999999886322111    111    13478888888777 4   


Q ss_pred             cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      ...+    ..+...++|++|+|++|++.....    ..+...+-.|++|+|++|.|++-.    -    ..+...   + 
T Consensus       139 ~~~p----~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~~L~~L~L~~N~l~~~~----~----~~~~~l---~-  198 (313)
T 1ogq_A          139 GTLP----PSISSLPNLVGITFDGNRISGAIP----DSYGSFSKLFTSMTISRNRLTGKI----P----PTFANL---N-  198 (313)
T ss_dssp             SCCC----GGGGGCTTCCEEECCSSCCEEECC----GGGGCCCTTCCEEECCSSEEEEEC----C----GGGGGC---C-
T ss_pred             CcCC----hHHhcCCCCCeEECcCCcccCcCC----HHHhhhhhcCcEEECcCCeeeccC----C----hHHhCC---c-
Confidence            1222    345667899999999999863322    223333337999999999998611    1    233222   2 


Q ss_pred             cceeehH------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          355 LRLLNLS------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       355 L~~LnLs------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|+|+      .+.+...+  -.+|+.|+|++|.++.....     +...++|++|++++|+|+
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCE
T ss_pred             ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCccc
Confidence            8899995      23334444  67899999999999743221     345688999999999873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.43  E-value=1.6e-07  Score=93.11  Aligned_cols=107  Identities=25%  Similarity=0.348  Sum_probs=54.2

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHH--
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH--  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~--  362 (414)
                      +....+|+.|+|++|++..-...    .+.+.+ +|++|+|++|.|++    ..-    .++.   ++.+|++|+|+.  
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~-~L~~L~l~~n~i~~----~~~----~~~~---~l~~L~~L~l~~~~  211 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTE----ALSHLH-GLIVLRLRHLNINA----IRD----YSFK---RLYRLKVLEISHWP  211 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHH----HHTTCT-TCCEEEEESCCCCE----ECT----TCSC---SCTTCCEEEEECCT
T ss_pred             ccCCCCCCEEECCCCcCcccChh----HhcccC-CCcEEeCCCCcCcE----eCh----hhcc---cCcccceeeCCCCc
Confidence            34556677777777766553322    233344 67777777777765    111    1222   223466666631  


Q ss_pred             ----HHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          363 ----IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       363 ----l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                          +......  ..+|++|+|++|.++.....+    +..-++|++|+|++|.|
T Consensus       212 ~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          212 YLDTMTPNCLY--GLNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             TCCEECTTTTT--TCCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCC
T ss_pred             cccccCccccc--CccccEEECcCCcccccCHHH----hcCccccCeeECCCCcC
Confidence                1111111  336666666666666544322    33345566666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.42  E-value=9.8e-08  Score=91.29  Aligned_cols=175  Identities=16%  Similarity=0.051  Sum_probs=111.7

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +++.|.|++. .+...     ..-..+.++|++|+|++|.+....-.    ++..    --++++|.+..+.+ +    +
T Consensus        53 ~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~----l~~L~~L~Ls~n~l-~----~  114 (353)
T 2z80_A           53 AVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEED----SFSS----LGSLEHLDLSYNYL-S----N  114 (353)
T ss_dssp             TCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTT----TTTT----CTTCCEEECCSSCC-S----S
T ss_pred             cCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHh----hcCC----CCCCCEEECCCCcC-C----c
Confidence            5777776655 22111     11134567999999999988753211    1111    13488888888877 4    2


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCC-CCCcccccCCCChhhhhhcCcccCCc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSL  355 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~-Lt~wl~~~~c~~ls~aL~~nks~~~L  355 (414)
                      .+   ..++....+|++|+|++|++..-...   ..+...+ +|++|+|++|. +++    ..-    .++....   +|
T Consensus       115 ~~---~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~-~L~~L~l~~n~~~~~----~~~----~~~~~l~---~L  176 (353)
T 2z80_A          115 LS---SSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLT-KLQILRVGNMDTFTK----IQR----KDFAGLT---FL  176 (353)
T ss_dssp             CC---HHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCT-TCCEEEEEESSSCCE----ECT----TTTTTCC---EE
T ss_pred             CC---HhHhCCCccCCEEECCCCCCcccCch---hhhccCC-CCcEEECCCCccccc----cCH----HHccCCC---CC
Confidence            22   23467789999999999998742210   1233444 89999999994 665    111    2343334   49


Q ss_pred             ceeehH--HH----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          356 RLLNLS--HI----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       356 ~~LnLs--~l----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|+|+  .+    .+++.+  -.+|++|++++|.++.....    ....-++|++|++++|+|+
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKS--IQNVSHLILHMKQHILLLEI----FVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTT--CSEEEEEEEECSCSTTHHHH----HHHHTTTEEEEEEESCBCT
T ss_pred             CEEECCCCCcCccCHHHHhc--cccCCeecCCCCccccchhh----hhhhcccccEEECCCCccc
Confidence            999995  22    233333  57899999999999765533    2334588999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.41  E-value=4.4e-07  Score=84.68  Aligned_cols=118  Identities=21%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  337 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~  337 (414)
                      .++.|.+..+.+ +    .    +. .+....+|+.|+|++|++.+-..      +...+ .|++|+|++|.|++     
T Consensus        42 ~L~~L~l~~n~i-~----~----l~-~l~~l~~L~~L~L~~N~i~~~~~------l~~l~-~L~~L~L~~N~l~~-----   99 (263)
T 1xeu_A           42 GVQNFNGDNSNI-Q----S----LA-GMQFFTNLKELHLSHNQISDLSP------LKDLT-KLEELSVNRNRLKN-----   99 (263)
T ss_dssp             TCSEEECTTSCC-C----C----CT-TGGGCTTCCEEECCSSCCCCCGG------GTTCS-SCCEEECCSSCCSC-----
T ss_pred             cCcEEECcCCCc-c----c----ch-HHhhCCCCCEEECCCCccCCChh------hccCC-CCCEEECCCCccCC-----
Confidence            477888888887 4    1    22 46778999999999999988654      55555 99999999999998     


Q ss_pred             CCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                       -.    .+..    .+|++|+|+  .+.  ..+.+  -.+|+.|+|++|.+++..      .+..-++|++|++++|+|
T Consensus       100 -l~----~~~~----~~L~~L~L~~N~l~~~~~l~~--l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          100 -LN----GIPS----ACLSRLFLDNNELRDTDSLIH--LKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             -CT----TCCC----SSCCEEECCSSCCSBSGGGTT--CTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCC
T ss_pred             -cC----cccc----CcccEEEccCCccCCChhhcC--cccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcC
Confidence             11    1111    359999995  111  22344  678999999999999862      577789999999999998


Q ss_pred             C
Q 015056          414 S  414 (414)
Q Consensus       414 ~  414 (414)
                      +
T Consensus       163 ~  163 (263)
T 1xeu_A          163 T  163 (263)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.40  E-value=2e-07  Score=92.31  Aligned_cols=154  Identities=13%  Similarity=0.161  Sum_probs=90.8

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+....-..    +..    --++++|.+..+.+ +    ..+   ..++....+|++|+|++|++
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~----~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGA----FNN----LFNLRTLGLRSNRL-K----LIP---LGVFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTT----TTT----CTTCCEEECCSSCC-C----SCC---TTSSTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCccCEeChhh----hhC----CccCCEEECCCCcC-C----ccC---cccccCCCCCCEEECCCCcc
Confidence            45568899999888776432111    111    12477777776665 3    111   12345567888888888887


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCce
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSV  375 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~L  375 (414)
                      ......    .+...+ +|++|+|++|.|++    ..-    .++...   .+|++|+|+  .+    .+++..  -.+|
T Consensus       117 ~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~--l~~L  178 (477)
T 2id5_A          117 VILLDY----MFQDLY-NLKSLEVGDNDLVY----ISH----RAFSGL---NSLEQLTLEKCNLTSIPTEALSH--LHGL  178 (477)
T ss_dssp             CEECTT----TTTTCT-TCCEEEECCTTCCE----ECT----TSSTTC---TTCCEEEEESCCCSSCCHHHHTT--CTTC
T ss_pred             ccCChh----Hccccc-cCCEEECCCCccce----eCh----hhccCC---CCCCEEECCCCcCcccChhHhcc--cCCC
Confidence            644221    233344 78888888888876    211    233322   347788874  11    122333  5678


Q ss_pred             eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          376 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       376 q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +.|+|++|.++.....    ++..-++|++|++++|.+
T Consensus       179 ~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          179 IVLRLRHLNINAIRDY----SFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             CEEEEESCCCCEECTT----CSCSCTTCCEEEEECCTT
T ss_pred             cEEeCCCCcCcEeChh----hcccCcccceeeCCCCcc
Confidence            8888888887764332    344557788888888753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.40  E-value=1.5e-07  Score=93.11  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=95.9

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+.......    +..    --++++|.+..+.+ +.    .+   ..++....+|+.|+|++|++
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~----~~~----l~~L~~L~L~~n~l-~~----~~---~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGA----FNG----LANLNTLELFDNRL-TT----IP---NGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGG----GTT----CSSCCEEECCSSCC-SS----CC---TTTSCSCSSCCEEECCSCCC
T ss_pred             hCCCCCCEEECCCCcCCccChhh----ccC----CccCCEEECCCCcC-Ce----eC---HhHhhccccCceeeCCCCcc
Confidence            45678999999999876533221    111    12477788877766 41    11   12455668888888888888


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeE
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQV  377 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~  377 (414)
                      ..-..    ..+...+ +|++|+|++|..-+.+   .-    .++..   +.+|++|+|+  .+.  ..+..  -.+|++
T Consensus       149 ~~~~~----~~~~~l~-~L~~L~l~~~~~l~~i---~~----~~~~~---l~~L~~L~L~~n~l~~~~~~~~--l~~L~~  211 (440)
T 3zyj_A          149 ESIPS----YAFNRIP-SLRRLDLGELKRLSYI---SE----GAFEG---LSNLRYLNLAMCNLREIPNLTP--LIKLDE  211 (440)
T ss_dssp             CEECT----TTTTTCT-TCCEEECCCCTTCCEE---CT----TTTTT---CSSCCEEECTTSCCSSCCCCTT--CSSCCE
T ss_pred             cccCH----HHhhhCc-ccCEeCCCCCCCccee---Cc----chhhc---ccccCeecCCCCcCccccccCC--CcccCE
Confidence            64322    1223344 7888888885433311   11    23433   3448888885  111  11222  568999


Q ss_pred             EEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          378 LNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       378 L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |+|++|.++....    .++..-++|++|++++|+|+
T Consensus       212 L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          212 LDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             EECTTSCCCEECT----TTTTTCTTCCEEECTTCCCC
T ss_pred             EECCCCccCccCh----hhhccCccCCEEECCCCcee
Confidence            9999999987543    34556688999999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.40  E-value=1.1e-07  Score=99.48  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCc-ccHHHHHHH--HhcCCcccEEEccC
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS-SVVVELVSF--LSSGRSLCSLKLRH  298 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~-~~~~~Las~--Lssn~sL~~L~Ls~  298 (414)
                      +.++|++|+|++|.+....-    +.+..    --.++.|.+..+. + +   . ..+.++...  +....+|++|+|++
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p----~~l~~----l~~L~~L~Ls~n~~l-~---~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLP----TFLKA----LPEMQLINVACNRGI-S---GEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCC----TTTTT----CSSCCEEECTTCTTS-C---HHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             ccCCCCEEEecCCcCCccCh----HHHhc----CCCCCEEECcCCCCC-c---cccchHHHHhhhccccCCCCCEEECCC
Confidence            55577777777776554211    11111    1246667777666 4 4   2 455555543  34457777888888


Q ss_pred             CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCC
Q 015056          299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGT  373 (414)
Q Consensus       299 N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c  373 (414)
                      |++. +--.  ...+...+ +|++|+|++|.|++.+        . ++..   +.+|++|+|+     .+...+.+  -.
T Consensus       315 n~l~-~ip~--~~~l~~l~-~L~~L~L~~N~l~g~i--------p-~~~~---l~~L~~L~L~~N~l~~lp~~l~~--l~  376 (636)
T 4eco_A          315 NNLK-TFPV--ETSLQKMK-KLGMLECLYNQLEGKL--------P-AFGS---EIKLASLNLAYNQITEIPANFCG--FT  376 (636)
T ss_dssp             SCCS-SCCC--HHHHTTCT-TCCEEECCSCCCEEEC--------C-CCEE---EEEESEEECCSSEEEECCTTSEE--EC
T ss_pred             CcCC-ccCc--hhhhccCC-CCCEEeCcCCcCccch--------h-hhCC---CCCCCEEECCCCccccccHhhhh--hc
Confidence            7775 1110  01334444 7888888888887411        1 2222   2348888884     22222333  34


Q ss_pred             c-eeEEEeecccCCchhHHHHHHHHhcC--CCCcEEecCCCCCC
Q 015056          374 S-VQVLNIGAIGLGSSGFRVLQDGVTKE--LKLVNINIRFKPIS  414 (414)
Q Consensus       374 ~-Lq~L~L~~c~lg~~gcqaLa~aL~~N--~~L~~LdLs~N~i~  414 (414)
                      + |+.|+|++|.++..     ...+...  .+|++|++++|+|+
T Consensus       377 ~~L~~L~Ls~N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          377 EQVENLSFAHNKLKYI-----PNIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             TTCCEEECCSSCCSSC-----CSCCCTTCSSCEEEEECCSSCTT
T ss_pred             ccCcEEEccCCcCccc-----chhhhhcccCccCEEECcCCcCC
Confidence            5 88899999888842     2222222  37889999988873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.39  E-value=7.7e-08  Score=95.46  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=96.6

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+.......    +..    --++++|.+..+.+ +    ..+   ..++....+|++|+|++|++
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~----~~~----l~~L~~L~L~~n~l-~----~~~---~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGA----FNG----LASLNTLELFDNWL-T----VIP---SGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTT----TTT----CTTCCEEECCSSCC-S----BCC---TTTSSSCTTCCEEECCSCCC
T ss_pred             CCCCCCCEEECCCCccCCcChhh----ccC----cccCCEEECCCCcC-C----ccC---hhhhcccCCCCEEECCCCCc
Confidence            45578999999999876532211    111    12477788877766 4    111   22345677888888888888


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCcee
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQ  376 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq  376 (414)
                      ..-..    ..+...+ +|++|+|++| .++. +   .-    .++..   +.+|++|+|+  .+.+  .+..  -.+|+
T Consensus       160 ~~~~~----~~~~~l~-~L~~L~l~~~~~l~~-i---~~----~~~~~---l~~L~~L~L~~n~l~~~~~~~~--l~~L~  221 (452)
T 3zyi_A          160 ESIPS----YAFNRVP-SLMRLDLGELKKLEY-I---SE----GAFEG---LFNLKYLNLGMCNIKDMPNLTP--LVGLE  221 (452)
T ss_dssp             CEECT----TTTTTCT-TCCEEECCCCTTCCE-E---CT----TTTTT---CTTCCEEECTTSCCSSCCCCTT--CTTCC
T ss_pred             ceeCH----hHHhcCC-cccEEeCCCCCCccc-c---Ch----hhccC---CCCCCEEECCCCcccccccccc--ccccc
Confidence            64321    1233444 8888888884 4443 1   11    23333   3448899985  2211  1222  56899


Q ss_pred             EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|+|++|.++....    ..+..-++|++|++++|+|+
T Consensus       222 ~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          222 ELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             EEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCC
T ss_pred             EEECcCCcCcccCc----ccccCccCCCEEEeCCCcCc
Confidence            99999999987543    34556688999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.39  E-value=6.4e-08  Score=92.03  Aligned_cols=173  Identities=18%  Similarity=0.275  Sum_probs=113.0

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      -+|++|.|++. .+.....     -+.+.++|++|+|++|.+......    .+..    --.+++|.+..+.+ +   .
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~----l~~L~~L~L~~N~l-~---~  163 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPD-----FLSQIKTLVTLDFSYNALSGTLPP----SISS----LPNLVGITFDGNRI-S---G  163 (313)
T ss_dssp             TTCSEEEEEEECCEEECCG-----GGGGCTTCCEEECCSSEEESCCCG----GGGG----CTTCCEEECCSSCC-E---E
T ss_pred             CCCCEEECcCCeeCCcCCH-----HHhCCCCCCEEeCCCCccCCcCCh----HHhc----CCCCCeEECcCCcc-c---C
Confidence            47888888876 2211111     134557999999999987642211    1111    13488899988877 4   2


Q ss_pred             ccHHHHHHHHhcCC-cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          276 SVVVELVSFLSSGR-SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       276 ~~~~~Las~Lssn~-sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      ..+..    +.... +|+.|+|++|++.......    +...  .|++|+|++|.|++.        ....+....   +
T Consensus       164 ~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~----~~~l--~L~~L~Ls~N~l~~~--------~~~~~~~l~---~  222 (313)
T 1ogq_A          164 AIPDS----YGSFSKLFTSMTISRNRLTGKIPPT----FANL--NLAFVDLSRNMLEGD--------ASVLFGSDK---N  222 (313)
T ss_dssp             ECCGG----GGCCCTTCCEEECCSSEEEEECCGG----GGGC--CCSEEECCSSEEEEC--------CGGGCCTTS---C
T ss_pred             cCCHH----HhhhhhcCcEEECcCCeeeccCChH----HhCC--cccEEECcCCcccCc--------CCHHHhcCC---C
Confidence            33333    34454 8999999999986433222    2222  399999999999971        123444434   4


Q ss_pred             cceeehH--HHH---hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          355 LRLLNLS--HIA---ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       355 L~~LnLs--~l~---~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      |++|+|+  .+.   .....  -.+|++|+|++|.++..    +...+..-++|++||+++|+|
T Consensus       223 L~~L~L~~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDLGKVGL--SKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CSEEECCSSEECCBGGGCCC--CTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEE
T ss_pred             CCEEECCCCceeeecCcccc--cCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCcc
Confidence            9999995  221   12223  57899999999999854    233466778999999999986

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=3.4e-07  Score=100.89  Aligned_cols=155  Identities=17%  Similarity=0.262  Sum_probs=78.7

Q ss_pred             CCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCc-ccHHHHHHH---HhcCCcccEEEcc
Q 015056          223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS-SVVVELVSF---LSSGRSLCSLKLR  297 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~-~~~~~Las~---Lssn~sL~~L~Ls  297 (414)
                      +.++|++|+|++|.+....-    ..+..    --+++.|.+..+. + +   . ..|.++...   +....+|+.|+|+
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP----~~l~~----L~~L~~L~Ls~N~~l-s---g~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLP----DFLYD----LPELQSLNIACNRGI-S---AAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCC----GGGGG----CSSCCEEECTTCTTS-C---HHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             cCCCCCEEECcCCCCCccCh----HHHhC----CCCCCEEECcCCCCc-c---cccchHHHHhhhhcccccCCccEEEee
Confidence            44566666666665543211    11111    0235566666555 4 3   2 344444432   2445567777777


Q ss_pred             CCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H---HHhhccccCC
Q 015056          298 HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H---IAASLGKFFG  372 (414)
Q Consensus       298 ~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~---l~~agvk~L~  372 (414)
                      +|.+. .--.  ...+...+ +|++|+|++|.|+. +   .      .+..   +.+|++|+|+  .   +...+.+  -
T Consensus       557 ~N~L~-~ip~--~~~l~~L~-~L~~L~Ls~N~l~~-l---p------~~~~---L~~L~~L~Ls~N~l~~lp~~l~~--l  617 (876)
T 4ecn_A          557 YNNLE-EFPA--SASLQKMV-KLGLLDCVHNKVRH-L---E------AFGT---NVKLTDLKLDYNQIEEIPEDFCA--F  617 (876)
T ss_dssp             SSCCC-BCCC--HHHHTTCT-TCCEEECTTSCCCB-C---C------CCCT---TSEESEEECCSSCCSCCCTTSCE--E
T ss_pred             CCcCC-ccCC--hhhhhcCC-CCCEEECCCCCccc-c---h------hhcC---CCcceEEECcCCccccchHHHhh--c
Confidence            77665 1100  01334444 67777777777664 1   1      2222   2347777774  2   2222222  3


Q ss_pred             Cc-eeEEEeecccCCchhHHHHHHHHh--cCCCCcEEecCCCCC
Q 015056          373 TS-VQVLNIGAIGLGSSGFRVLQDGVT--KELKLVNINIRFKPI  413 (414)
Q Consensus       373 c~-Lq~L~L~~c~lg~~gcqaLa~aL~--~N~~L~~LdLs~N~i  413 (414)
                      .+ |+.|+|++|.++..     ...+.  .+.+|++|++++|+|
T Consensus       618 ~~~L~~L~Ls~N~L~~l-----p~~~~~~~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          618 TDQVEGLGFSHNKLKYI-----PNIFNAKSVYVMGSVDFSYNKI  656 (876)
T ss_dssp             CTTCCEEECCSSCCCSC-----CSCCCTTCSSCEEEEECCSSCT
T ss_pred             cccCCEEECcCCCCCcC-----chhhhccccCCCCEEECcCCcC
Confidence            34 78888888877732     12222  223478888888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=1.2e-07  Score=97.79  Aligned_cols=37  Identities=35%  Similarity=0.370  Sum_probs=19.8

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+|+.|+|++|.+.+-      ..+...+ +|++|+|++|.|++
T Consensus       232 ~~L~~L~L~~n~l~~~------~~l~~l~-~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          232 VELTILKLQHNNLTDT------AWLLNYP-GLVEVDLSYNELEK  268 (597)
T ss_dssp             SCCCEEECCSSCCCCC------GGGGGCT-TCSEEECCSSCCCE
T ss_pred             CCCCEEECCCCCCCCC------hhhccCC-CCCEEECCCCccCC
Confidence            3566666666666542      2333444 56666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.38  E-value=3e-07  Score=93.50  Aligned_cols=34  Identities=12%  Similarity=0.005  Sum_probs=17.1

Q ss_pred             eeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       375 Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +++|++++|.++.....     .-.+.+|++|++++|.+
T Consensus       183 l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~n~~  216 (606)
T 3vq2_A          183 NLSLDMSLNPIDFIQDQ-----AFQGIKLHELTLRGNFN  216 (606)
T ss_dssp             CCEEECTTCCCCEECTT-----TTTTCEEEEEEEESCCS
T ss_pred             cceeeccCCCcceeCcc-----cccCceeeeeeccCCcc
Confidence            34555555555532221     11233577777777654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.37  E-value=1.4e-07  Score=93.69  Aligned_cols=198  Identities=20%  Similarity=0.153  Sum_probs=100.2

Q ss_pred             cchhhhcccccccchhhhchhcc-ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcC
Q 015056          174 HYARCLRLQNALCVEETCQLLRE-SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCS  251 (414)
Q Consensus       174 ~yvr~l~l~~~l~~~~~~~l~~~-ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~  251 (414)
                      ..++.|.|.+---..-...-+.+ -+|+.|.|++. .+....     .-..+.++|++|+|++|.+..-.-.    ++..
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~  145 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-----GAFNGLASLNTLELFDNWLTVIPSG----AFEY  145 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCSBCCTT----TSSS
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-----hhccCcccCCEEECCCCcCCccChh----hhcc
Confidence            45666666542111111122333 37888888765 222110     1124557999999999988642211    1111


Q ss_pred             ccccccccceeeccccccccCCCcccHH-HHH---------------------HHHhcCCcccEEEccCCCCCchhHHHH
Q 015056          252 KRKRIHKIENLSIDISSFIENCPSSVVV-ELV---------------------SFLSSGRSLCSLKLRHCHLDRDFGRMV  309 (414)
Q Consensus       252 p~v~~C~lq~lsl~tc~~~~~~~~~~~~-~La---------------------s~Lssn~sL~~L~Ls~N~L~d~gaklL  309 (414)
                          --++++|.+..+.+ +    ..+. .+.                     .++....+|+.|+|++|++.+-.    
T Consensus       146 ----l~~L~~L~L~~N~l-~----~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----  212 (452)
T 3zyi_A          146 ----LSKLRELWLRNNPI-E----SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----  212 (452)
T ss_dssp             ----CTTCCEEECCSCCC-C----EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----
T ss_pred             ----cCCCCEEECCCCCc-c----eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----
Confidence                13588888887776 4    1111 010                     02333445555555555554321    


Q ss_pred             HHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCceeEEEeecc
Q 015056          310 FSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSVQVLNIGAI  383 (414)
Q Consensus       310 ~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~Lq~L~L~~c  383 (414)
                        .+...+ +|++|+|++|.|++    ..    ..++...   .+|++|+|+  .+.    ++...  -.+|+.|+|++|
T Consensus       213 --~~~~l~-~L~~L~Ls~N~l~~----~~----~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N  276 (452)
T 3zyi_A          213 --NLTPLV-GLEELEMSGNHFPE----IR----PGSFHGL---SSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHN  276 (452)
T ss_dssp             --CCTTCT-TCCEEECTTSCCSE----EC----GGGGTTC---TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSS
T ss_pred             --cccccc-cccEEECcCCcCcc----cC----cccccCc---cCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCC
Confidence              233333 56666666666654    11    1233222   336777774  111    12222  356777777777


Q ss_pred             cCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          384 GLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       384 ~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .++.....    ++..-++|++|+|++|.+
T Consensus       277 ~l~~~~~~----~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          277 NLSSLPHD----LFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CCSCCCTT----SSTTCTTCCEEECCSSCE
T ss_pred             cCCccChH----HhccccCCCEEEccCCCc
Confidence            77754322    233456777888887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.36  E-value=2.6e-07  Score=95.49  Aligned_cols=40  Identities=15%  Similarity=0.271  Sum_probs=23.4

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|++|+|++|.++...-..++.  ..+++|++|++++|+|+
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~~--l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFLG--LKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTGG--GGGSCCCEEECTTSCCC
T ss_pred             ccccEEEccCCcccccChhHhhc--cCcCCCCEEECCCCCcC
Confidence            56666666666666544333222  12355888888887763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.36  E-value=1.2e-07  Score=91.09  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056          224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  303 (414)
Q Consensus       224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d  303 (414)
                      .++|++|+|++|.+..  +.   ..+.    .--++++|.+..+.+ +    ..+    ..+....+|+.|+|++|.+..
T Consensus       103 l~~L~~L~L~~n~l~~--lp---~~~~----~l~~L~~L~Ls~n~l-~----~lp----~~l~~l~~L~~L~L~~n~~~~  164 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLME--LP---DTMQ----QFAGLETLTLARNPL-R----ALP----ASIASLNRLRELSIRACPELT  164 (328)
T ss_dssp             GTTCSEEEEESSCCCC--CC---SCGG----GGTTCSEEEEESCCC-C----CCC----GGGGGCTTCCEEEEEEETTCC
T ss_pred             CCCCCEEECCCCCccc--hh---HHHh----ccCCCCEEECCCCcc-c----cCc----HHHhcCcCCCEEECCCCCCcc
Confidence            4577888887777652  11   1111    112466777776665 3    222    224556777777777755432


Q ss_pred             hhHHHHH-----HHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCC
Q 015056          304 DFGRMVF-----SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGT  373 (414)
Q Consensus       304 ~gaklL~-----~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c  373 (414)
                      ..-..+.     ..+...+ +|++|+|++|.|+.         +...+....   +|++|+|+     .+...+.+  -.
T Consensus       165 ~~p~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~---------lp~~l~~l~---~L~~L~L~~N~l~~l~~~l~~--l~  229 (328)
T 4fcg_A          165 ELPEPLASTDASGEHQGLV-NLQSLRLEWTGIRS---------LPASIANLQ---NLKSLKIRNSPLSALGPAIHH--LP  229 (328)
T ss_dssp             CCCSCSEEEC-CCCEEEST-TCCEEEEEEECCCC---------CCGGGGGCT---TCCEEEEESSCCCCCCGGGGG--CT
T ss_pred             ccChhHhhccchhhhccCC-CCCEEECcCCCcCc---------chHhhcCCC---CCCEEEccCCCCCcCchhhcc--CC
Confidence            2111000     0011234 67777777777774         112333333   37777774     22222333  46


Q ss_pred             ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|+.|+|++|.+...-    ...+..-++|++|+|++|++
T Consensus       230 ~L~~L~Ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          230 KLEELDLRGCTALRNY----PPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             TCCEEECTTCTTCCBC----CCCTTCCCCCCEEECTTCTT
T ss_pred             CCCEEECcCCcchhhh----HHHhcCCCCCCEEECCCCCc
Confidence            6788888877665432    22344556788888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.34  E-value=3.7e-07  Score=83.15  Aligned_cols=105  Identities=18%  Similarity=0.114  Sum_probs=52.7

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----  361 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----  361 (414)
                      ...+|+.|+|++|++..-..    ..+...+ +|++|+|++|.|++    ..-    .++..   +.+|++|+|+     
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~----~~~~~l~-~L~~L~Ls~N~l~~----l~~----~~~~~---l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPV----GVFDSLT-QLTVLDLGTNQLTV----LPS----AVFDR---LVHLKELFMCCNKLT  125 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCC
T ss_pred             CccCCcEEECCCCCCCCcCh----hhcccCC-CcCEEECCCCcCCc----cCh----hHhCc---chhhCeEeccCCccc
Confidence            34566666666666633211    1122233 66666666666665    111    12222   2236666663     


Q ss_pred             HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 ~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+.....+  -.+|+.|+|++|.++...-    .++..-++|++|++++|.+
T Consensus       126 ~lp~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          126 ELPRGIER--LTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SCCTTGGG--CTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCB
T ss_pred             ccCccccc--CCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCCc
Confidence            22222233  4566666666666664322    2344446666777766654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.32  E-value=1.5e-07  Score=101.36  Aligned_cols=165  Identities=18%  Similarity=0.118  Sum_probs=90.9

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.....--   -+++.    .--+++.|.+..+.+ +   ..    ....+...++|++|+|++|.+
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~---~~~f~----~L~~L~~L~Ls~N~l-~---~~----~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTID---KEAFR----NLPNLRILDLGSSKI-Y---FL----HPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEEC---TTTTS----SCTTCCEEECTTCCC-C---EE----CTTSSCSCSSCCCEECTTCCC
T ss_pred             cccccCeEEeCCCCCCccccC---HHHhc----CCCCCCEEECCCCcC-c---cc----CHhHccCCcccCEeeCcCCCC
Confidence            566788888888884321100   00111    012467777777766 3   11    123456678888888888887


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCce
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSV  375 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~L  375 (414)
                      .+.....  ..+...+ +|++|||++|.|++    .  . ....+....   +|++|+|+  .+.    +.+..+-+.+|
T Consensus       110 ~~~~~~~--~~~~~L~-~L~~L~Ls~N~l~~----~--~-~~~~~~~L~---~L~~L~Ls~N~i~~~~~~~l~~l~~~~L  176 (844)
T 3j0a_A          110 SDAVLKD--GYFRNLK-ALTRLDLSKNQIRS----L--Y-LHPSFGKLN---SLKSIDFSSNQIFLVCEHELEPLQGKTL  176 (844)
T ss_dssp             SSCCSTT--CCCSSCS-SCCEEEEESCCCCC----C--C-CCGGGGTCS---SCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred             CcccccC--ccccccC-CCCEEECCCCcccc----c--c-cchhHhhCC---CCCEEECCCCcCCeeCHHHcccccCCcc
Confidence            6432110  0133344 78888888888876    1  1 112443334   48888884  121    11211113678


Q ss_pred             eEEEeecccCCchhHHHHHHH--HhcCCCCcEEecCCCCCC
Q 015056          376 QVLNIGAIGLGSSGFRVLQDG--VTKELKLVNINIRFKPIS  414 (414)
Q Consensus       376 q~L~L~~c~lg~~gcqaLa~a--L~~N~~L~~LdLs~N~i~  414 (414)
                      +.|+|+.|.++......++..  .-.+.+|++|++++|.++
T Consensus       177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence            888888888776433222211  123456999999998753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.30  E-value=4.2e-07  Score=92.40  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=9.8

Q ss_pred             CCCCCcEEEcccCCCCh
Q 015056          223 NSETLASLEFLHCKLSP  239 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~~  239 (414)
                      +.++|++|++++|.+..
T Consensus       348 ~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          348 NLENLRELDLSHDDIET  364 (606)
T ss_dssp             TCTTCCEEECCSSCCCE
T ss_pred             ccCcCCEEECCCCcccc
Confidence            34466666666666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.30  E-value=1.1e-06  Score=90.84  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=90.1

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.+....-..+. .+       -.++.|.+..+.+ +    ..+.   .++....+|++|+|++|++
T Consensus        46 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l-------~~L~~L~L~~n~l-~----~l~~---~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           46 TRYSQLTSLDVGFNTISKLEPELCQ-KL-------PMLKVLNLQHNEL-S----QLSD---KTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             GGGTTCSEEECCSSCCCCCCTTHHH-HC-------TTCCEEECCSSCC-C----CCCT---TTTTTCTTCSEEECCSSCC
T ss_pred             hCCCcCcEEECCCCccCccCHHHHh-cc-------cCcCEEECCCCcc-C----ccCh---hhhccCCCCCEEECCCCcc
Confidence            3446889999998877653222111 11       2366777777666 4    1111   1345677888888888877


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCce
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSV  375 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~L  375 (414)
                      ..-...    ++...+ +|++|+|++|.+++    ..-    .++.   ++.+|++|+|+  .+    ..+...+-..+|
T Consensus       110 ~~~~~~----~~~~l~-~L~~L~Ls~n~l~~----~~~----~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L  173 (680)
T 1ziw_A          110 QKIKNN----PFVKQK-NLITLDLSHNGLSS----TKL----GTQV---QLENLQELLLSNNKIQALKSEELDIFANSSL  173 (680)
T ss_dssp             CCCCSC----TTTTCT-TCCEEECCSSCCSC----CCC----CSSS---CCTTCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred             CccChh----HccccC-CCCEEECCCCcccc----cCc----hhhc---ccccCCEEEccCCcccccCHHHhhccccccc
Confidence            542211    223334 78888888888876    111    1232   23448888874  11    111111114678


Q ss_pred             eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          376 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       376 q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|+|++|.++.....    ++..-.+|++|++++|.+
T Consensus       174 ~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l  207 (680)
T 1ziw_A          174 KKLELSSNQIKEFSPG----CFHAIGRLFGLFLNNVQL  207 (680)
T ss_dssp             SEEECTTCCCCCBCTT----GGGGSSEECEEECTTCCC
T ss_pred             cEEECCCCcccccChh----hhhhhhhhhhhhcccccc
Confidence            8888888887764422    334456788888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.30  E-value=4.5e-07  Score=90.86  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=10.0

Q ss_pred             CCCCCcEEEcccCCCC
Q 015056          223 NSETLASLEFLHCKLS  238 (414)
Q Consensus       223 n~~tLt~L~L~~~~L~  238 (414)
                      +.++|++|+|++|.+.
T Consensus        50 ~l~~L~~L~Ls~n~i~   65 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQ   65 (570)
T ss_dssp             TCSSCCEEECTTCCCC
T ss_pred             CCCCceEEECCCCcCC
Confidence            4456777777777554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.30  E-value=3.6e-07  Score=94.30  Aligned_cols=109  Identities=16%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|+.|.|++. .+...     ..-..+.++|++|+|++|.+....-..    +.    .--+++.|.+..+.+ +    .
T Consensus        76 ~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~----~l~~L~~L~L~~n~l-~----~  137 (597)
T 3oja_B           76 QVELLNLNDLQIEEID-----TYAFAYAHTIQKLYMGFNAIRYLPPHV----FQ----NVPLLTVLVLERNDL-S----S  137 (597)
T ss_dssp             CCSEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TT----TCTTCCEEECCSSCC-C----C
T ss_pred             CCcEEECCCCCCCCCC-----hHHhcCCCCCCEEECCCCcCCCCCHHH----Hc----CCCCCCEEEeeCCCC-C----C
Confidence            5666666654 22111     011245568888888888775522110    00    112477777877776 4    1


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+.   .++....+|+.|+|++|.+..-...    .+...+ +|++|+|++|.|++
T Consensus       138 l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~-~L~~L~L~~N~l~~  185 (597)
T 3oja_B          138 LPR---GIFHNTPKLTTLSMSNNNLERIEDD----TFQATT-SLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCT---TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCT-TCCEEECTTSCCSB
T ss_pred             CCH---HHhccCCCCCEEEeeCCcCCCCChh----hhhcCC-cCcEEECcCCCCCC
Confidence            221   2245667888888888888653321    233344 78888888888886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.29  E-value=2.4e-07  Score=94.14  Aligned_cols=91  Identities=21%  Similarity=0.147  Sum_probs=45.5

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|++++|.+......    .+...    -.++.+.+..+.+ +..   .+   ...+...++|+.|+|++|++
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l----~~L~~L~l~~n~l-~~~---~~---~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTE----AFKEC----PQLELLDLAFTRL-KVK---DA---QSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTT----TTTTC----TTCSEEECTTCCE-ECC---TT---CCTTTTCTTCCEEECTTCCC
T ss_pred             ccCCCCCEEECCCCcCCcCCHH----HhcCC----ccCCeEECCCCcC-CCc---cc---chhhhCcccCCEEECCCCcc
Confidence            4456888888888876543211    11111    2356666665554 211   00   11234456666666666666


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ......    .+...+ +|++|+|++|.|++
T Consensus       438 ~~~~~~----~~~~l~-~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          438 DISSEQ----LFDGLP-ALQHLNLQGNHFPK  463 (606)
T ss_dssp             BTTCTT----TTTTCT-TCCEEECTTCBCGG
T ss_pred             CCcCHH----HHhCCC-CCCEEECCCCCCCc
Confidence            443221    122233 56666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.29  E-value=4.3e-07  Score=95.50  Aligned_cols=136  Identities=17%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             CCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCc
Q 015056          224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR  303 (414)
Q Consensus       224 ~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d  303 (414)
                      .++|++|+|++|.+..  +..++          -+++.|.+..+.+ +    ..+.       ...+|+.|+|++|++..
T Consensus        99 l~~L~~L~Ls~N~l~~--ip~l~----------~~L~~L~Ls~N~l-~----~lp~-------~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           99 PASLEYLDACDNRLST--LPELP----------ASLKHLDVDNNQL-T----MLPE-------LPALLEYINADNNQLTM  154 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCCCC----------TTCCEEECCSSCC-S----CCCC-------CCTTCCEEECCSSCCSC
T ss_pred             cCCCCEEEccCCCCCC--cchhh----------cCCCEEECCCCcC-C----CCCC-------cCccccEEeCCCCccCc
Confidence            4688999999998765  22111          1588888887776 4    1222       35789999999999864


Q ss_pred             hhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCce------
Q 015056          304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSV------  375 (414)
Q Consensus       304 ~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~L------  375 (414)
                      -..        .++ +|++|+|++|.|++ +.        . +.  .   +|++|+|+  .+. .+-. +..+|      
T Consensus       155 lp~--------~l~-~L~~L~Ls~N~L~~-lp--------~-l~--~---~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~  208 (571)
T 3cvr_A          155 LPE--------LPT-SLEVLSVRNNQLTF-LP--------E-LP--E---SLEALDVSTNLLE-SLPA-VPVRNHHSEET  208 (571)
T ss_dssp             CCC--------CCT-TCCEEECCSSCCSC-CC--------C-CC--T---TCCEEECCSSCCS-SCCC-CC--------C
T ss_pred             CCC--------cCC-CcCEEECCCCCCCC-cc--------h-hh--C---CCCEEECcCCCCC-chhh-HHHhhhccccc
Confidence            222        233 89999999999987 11        1 22  3   48888885  222 1111 22266      


Q ss_pred             -eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          376 -QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       376 -q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                       +.|+|++|.|+.     |...+...++|+.|+|++|.|+
T Consensus       209 L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          209 EIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCC
T ss_pred             ceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCC
Confidence             999999999984     3444556788999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.28  E-value=9.4e-07  Score=89.16  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=19.8

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      -.+|+.|+|++|.++...       +..-++|++|++++|+|
T Consensus       211 l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCC
T ss_pred             CCCCCEEECcCCcccccC-------ccccCCCCEEEeeCCcC
Confidence            355666666666666521       33445566666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.28  E-value=6.5e-07  Score=81.21  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=55.2

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI  363 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l  363 (414)
                      ....+|+.|+|++|++..-..    .++...+ .|++|+|++|.|++    ..-    .++....   +|++|+|+  .+
T Consensus        54 ~~l~~L~~L~L~~N~i~~i~~----~~~~~l~-~L~~L~Ls~N~l~~----~~~----~~~~~l~---~L~~L~Ls~N~l  117 (220)
T 2v70_A           54 KKLPQLRKINFSNNKITDIEE----GAFEGAS-GVNEILLTSNRLEN----VQH----KMFKGLE---SLKTLMLRSNRI  117 (220)
T ss_dssp             GGCTTCCEEECCSSCCCEECT----TTTTTCT-TCCEEECCSSCCCC----CCG----GGGTTCS---SCCEEECTTSCC
T ss_pred             ccCCCCCEEECCCCcCCEECH----HHhCCCC-CCCEEECCCCccCc----cCH----hHhcCCc---CCCEEECCCCcC
Confidence            445666677777766653221    1222333 66677777776665    111    2332223   36666664  11


Q ss_pred             ----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 ----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 ----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                          .++...  -.+|+.|+|++|.++...-    .++..-++|++|++++|.+
T Consensus       118 ~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          118 TCVGNDSFIG--LSSVRLLSLYDNQITTVAP----GAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCBCTTSSTT--CTTCSEEECTTSCCCCBCT----TTTTTCTTCCEEECCSCCE
T ss_pred             CeECHhHcCC--CccCCEEECCCCcCCEECH----HHhcCCCCCCEEEecCcCC
Confidence                122222  3566777777777665422    2333456677777777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.27  E-value=5.2e-07  Score=97.09  Aligned_cols=21  Identities=14%  Similarity=-0.065  Sum_probs=11.6

Q ss_pred             cccEEEccCCCCCchhHHHHH
Q 015056          290 SLCSLKLRHCHLDRDFGRMVF  310 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~  310 (414)
                      +|+.|+|++|.+.++....+.
T Consensus       205 ~L~~L~Ls~n~l~~~~~~~~~  225 (844)
T 3j0a_A          205 VLEILDVSGNGWTVDITGNFS  225 (844)
T ss_dssp             CBSEEBCSSCCSSTTTTSGGG
T ss_pred             ceeEEecCCCcCchhHHHHHH
Confidence            466666666665555444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.26  E-value=1.6e-07  Score=99.93  Aligned_cols=62  Identities=27%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .++.|.+..+.+ +   ..    +...+....+|+.|+|++|++......    .+...+ +|+.|+|++|.+++
T Consensus       395 ~L~~L~L~~n~l-~---~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~-~L~~L~L~~n~l~~  456 (768)
T 3rgz_A          395 TLQELYLQNNGF-T---GK----IPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLS-KLRDLKLWLNMLEG  456 (768)
T ss_dssp             CCCEEECCSSEE-E---EE----CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCT-TCCEEECCSSCCCS
T ss_pred             CccEEECCCCcc-c---cc----cCHHHhcCCCCCEEECcCCcccCcccH----HHhcCC-CCCEEECCCCcccC
Confidence            366666666665 3   11    223345567777777777766432211    222333 56666666666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.26  E-value=4.1e-07  Score=95.10  Aligned_cols=187  Identities=13%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             ccccceeeeecc-chHhHHHHHHHHhhCCCCCcEEEcccCC-CCh-h---HHHHHHhhhcCccccccccceeeccccccc
Q 015056          197 SKLQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCK-LSP-S---FVEGICRSLCSKRKRIHKIENLSIDISSFI  270 (414)
Q Consensus       197 ckLq~L~L~~~~-s~~~~~~L~~~L~~n~~tLt~L~L~~~~-L~~-~---~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~  270 (414)
                      .+|+.|.|++.. +..--     .-+.+.++|++|+|++|. ++. .   ++..+...-.-+     .+++|.+..+.+ 
T Consensus       249 ~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l-  317 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLP-----TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNL-  317 (636)
T ss_dssp             TTCCEEEEECCTTCSSCC-----TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCC-
T ss_pred             CCCCEEEecCCcCCccCh-----HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcC-
Confidence            367777777652 11100     123456789999999997 766 2   222222111112     367777777766 


Q ss_pred             cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHH------------------HHHHHhccCCCCccEEeccCCCCCC
Q 015056          271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGR------------------MVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gak------------------lL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +    ..+.  ...+....+|+.|+|++|++..+.-.                  .+-..+...+..|++|+|++|.|+.
T Consensus       318 ~----~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~  391 (636)
T 4eco_A          318 K----TFPV--ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY  391 (636)
T ss_dssp             S----SCCC--HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS
T ss_pred             C----ccCc--hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc
Confidence            3    1211  11455667777777777776511110                  0001112222115555555555553


Q ss_pred             cccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccC---------CCceeEEEeecccCCchhHHHHHHHHhcCC
Q 015056          333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF---------GTSVQVLNIGAIGLGSSGFRVLQDGVTKEL  401 (414)
Q Consensus       333 wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L---------~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~  401 (414)
                          ..     ..+ ...++.+|++|+|+  .+.......+         ..+|+.|+|++|.++....    .+...-+
T Consensus       392 ----lp-----~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~  457 (636)
T 4eco_A          392 ----IP-----NIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGS  457 (636)
T ss_dssp             ----CC-----SCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTC
T ss_pred             ----cc-----hhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCC
Confidence                10     111 11112247777774  2221111111         3477888888888774322    1222346


Q ss_pred             CCcEEecCCCCCC
Q 015056          402 KLVNINIRFKPIS  414 (414)
Q Consensus       402 ~L~~LdLs~N~i~  414 (414)
                      +|++|++++|+|+
T Consensus       458 ~L~~L~Ls~N~l~  470 (636)
T 4eco_A          458 PLSSINLMGNMLT  470 (636)
T ss_dssp             CCSEEECCSSCCS
T ss_pred             CCCEEECCCCCCC
Confidence            6777777777663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.25  E-value=2.3e-07  Score=94.35  Aligned_cols=37  Identities=14%  Similarity=0.033  Sum_probs=21.4

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCC-CCcEEecCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKEL-KLVNINIRFKPI  413 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~-~L~~LdLs~N~i  413 (414)
                      -.+|++|+|++|.++.-.     ..+..-+ +|++|++++|.+
T Consensus       520 l~~L~~L~l~~N~l~~~p-----~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          520 LYSLSTLDCSFNRIETSK-----GILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CTTCCEEECTTSCCCCEE-----SCGGGSCTTCCEEECCSCCC
T ss_pred             CCcCCEEECCCCcCcccC-----HhHhhhcccCcEEEccCCCc
Confidence            356677777777766422     1133333 477777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.25  E-value=5.3e-07  Score=77.28  Aligned_cols=105  Identities=22%  Similarity=0.058  Sum_probs=58.3

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH-
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA-  364 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~-  364 (414)
                      ..+|+.|+|++|.+.+-      ..+...+ .|++|+|++|.|++.+        ...+....   +|++|+|+  .+. 
T Consensus        48 l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~Ls~N~l~~~~--------~~~~~~l~---~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV------SNLPKLP-KLKKLELSENRIFGGL--------DMLAEKLP---NLTHLNLSGNKLKD  109 (168)
T ss_dssp             GGGCCEEEEESSCCCCC------SSCCCCS-SCCEEEEESCCCCSCC--------CHHHHHCT---TCCEEECBSSSCCS
T ss_pred             CCCCCEEeCcCCCCCCh------hhhccCC-CCCEEECcCCcCchHH--------HHHHhhCC---CCCEEeccCCccCc
Confidence            34566666666666543      3333333 5666666666666511        11221122   36666663  111 


Q ss_pred             ----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                          ..+..  -.+|+.|+|++|.++.... ....++..-++|++||+++|.+
T Consensus       110 ~~~~~~l~~--l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          110 ISTLEPLKK--LECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SGGGGGGSS--CSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTS
T ss_pred             chhHHHHhc--CCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCCh
Confidence                22333  4568888888888876543 1123556667899999988876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.25  E-value=1.6e-06  Score=87.51  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcc
Q 015056          198 KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS  276 (414)
Q Consensus       198 kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~  276 (414)
                      +|+.|.|++. .+...        +.+.++|++|+|++|.+....       +..    -..+++|.+..+.+ +    .
T Consensus        65 ~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~~~~-------~~~----l~~L~~L~L~~N~l-~----~  120 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLTNLD-------VTP----LTKLTYLNCDTNKL-T----K  120 (457)
T ss_dssp             TCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCC-------CTT----CTTCCEEECCSSCC-S----C
T ss_pred             CCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCceee-------cCC----CCcCCEEECCCCcC-C----e
Confidence            5666666655 22211        344557777777777765531       111    13466677766665 3    1


Q ss_pred             cHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc
Q 015056          277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR  356 (414)
Q Consensus       277 ~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~  356 (414)
                      .+      +....+|++|+|++|++..-       .+...+ .|++|++++|...+.   .       .+   ..+.+|+
T Consensus       121 l~------~~~l~~L~~L~l~~N~l~~l-------~l~~l~-~L~~L~l~~n~~~~~---~-------~~---~~l~~L~  173 (457)
T 3bz5_A          121 LD------VSQNPLLTYLNCARNTLTEI-------DVSHNT-QLTELDCHLNKKITK---L-------DV---TPQTQLT  173 (457)
T ss_dssp             CC------CTTCTTCCEEECTTSCCSCC-------CCTTCT-TCCEEECTTCSCCCC---C-------CC---TTCTTCC
T ss_pred             ec------CCCCCcCCEEECCCCcccee-------ccccCC-cCCEEECCCCCcccc---c-------cc---ccCCcCC
Confidence            11      45567777777777777652       133344 677777777733320   1       12   1234588


Q ss_pred             eeehH--HHHh-hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          357 LLNLS--HIAA-SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       357 ~LnLs--~l~~-agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|+|+  .+.. .+..  -.+|+.|++++|.++..       .+...++|++|++++|+|+
T Consensus       174 ~L~ls~n~l~~l~l~~--l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          174 TLDCSFNKITELDVSQ--NKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             EEECCSSCCCCCCCTT--CTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceecccc--CCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCccc
Confidence            88884  2111 1223  56789999999999876       2566788999999999874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.23  E-value=5e-07  Score=78.56  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=68.2

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HH
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HI  363 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l  363 (414)
                      .+|+.|+|++|.+.+-      ..+...+ .|++|+|++|.|++    ...+    .+....   +|++|+|+     .+
T Consensus        42 ~~L~~L~Ls~N~l~~~------~~l~~l~-~L~~L~Ls~N~l~~----~~~~----~~~~l~---~L~~L~L~~N~i~~~  103 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL------DGFPLLR-RLKTLLVNNNRICR----IGEG----LDQALP---DLTELILTNNSLVEL  103 (176)
T ss_dssp             TCCSEEECCSSCCCEE------CCCCCCS-SCCEEECCSSCCCE----ECSC----HHHHCT---TCCEEECCSCCCCCG
T ss_pred             CCCCEEECCCCCCCcc------cccccCC-CCCEEECCCCcccc----cCcc----hhhcCC---CCCEEECCCCcCCcc
Confidence            3788888888888752      3455555 88888888888886    2111    222233   37788884     22


Q ss_pred             Hh--hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 AA--SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 ~~--agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ..  .+..  -.+|+.|++++|.++..... -..++..-++|+.||++.|.+
T Consensus       104 ~~~~~l~~--l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          104 GDLDPLAS--LKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGGGGGGG--CTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCH
T ss_pred             hhhHhhhc--CCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCH
Confidence            22  3334  56789999999998764322 224566778899999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.23  E-value=8.6e-07  Score=74.49  Aligned_cols=126  Identities=17%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056          257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  336 (414)
Q Consensus       257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~  336 (414)
                      .+++.+.+..+.+ +.  ...+    ..+....+|+.|+|++|++.+-      ..+...+ .|++|+|++|.|+++   
T Consensus        17 ~~l~~L~l~~n~l-~~--~~~~----~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~-~L~~L~Ls~n~i~~~---   79 (149)
T 2je0_A           17 SDVKELVLDNSRS-NE--GKLE----GLTDEFEELEFLSTINVGLTSI------ANLPKLN-KLKKLELSDNRVSGG---   79 (149)
T ss_dssp             GGCSEEECTTCBC-BT--TBCC----SCCTTCTTCCEEECTTSCCCCC------TTCCCCT-TCCEEECCSSCCCSC---
T ss_pred             ccCeEEEccCCcC-Ch--hHHH----HHHhhcCCCcEEECcCCCCCCc------hhhhcCC-CCCEEECCCCcccch---
Confidence            5688999998887 30  1122    2345678999999999999775      4455555 999999999999972   


Q ss_pred             cCCCChhhhhhcCcccCCcceeehH-----HHH--hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecC
Q 015056          337 YDRSGPLFSLGAGKSLQSLRLLNLS-----HIA--ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIR  409 (414)
Q Consensus       337 ~~c~~ls~aL~~nks~~~L~~LnLs-----~l~--~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs  409 (414)
                           ....+....   +|++|+|+     .+.  ..+..  -.+|+.|++++|.++.... ....++..-++|++||++
T Consensus        80 -----~~~~~~~l~---~L~~L~ls~N~i~~~~~~~~~~~--l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           80 -----LEVLAEKCP---NLTHLNLSGNKIKDLSTIEPLKK--LENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -----THHHHHHCT---TCCEEECTTSCCCSHHHHGGGGG--CTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred             -----HHHHhhhCC---CCCEEECCCCcCCChHHHHHHhh--CCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence                 223333334   49999995     221  34444  5789999999999987653 112345666889999986


Q ss_pred             C
Q 015056          410 F  410 (414)
Q Consensus       410 ~  410 (414)
                      .
T Consensus       149 d  149 (149)
T 2je0_A          149 D  149 (149)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.22  E-value=2.9e-07  Score=98.04  Aligned_cols=37  Identities=11%  Similarity=0.034  Sum_probs=19.6

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcC-CCCcEEecCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKE-LKLVNINIRFKPI  413 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i  413 (414)
                      .+|++|+|++|.++...-.    .+... ++|++|++++|+|
T Consensus       269 ~~L~~L~L~~n~l~~~ip~----~~~~~~~~L~~L~Ls~n~l  306 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPD----FLSGACDTLTGLDLSGNHF  306 (768)
T ss_dssp             TTCCEEECCSSEEEESCCC----CSCTTCTTCSEEECCSSEE
T ss_pred             CCCCEEECcCCccCCccCH----HHHhhcCcCCEEECcCCcC
Confidence            4566666666665532111    11122 5677777777754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.22  E-value=6.1e-07  Score=79.47  Aligned_cols=37  Identities=19%  Similarity=0.028  Sum_probs=21.0

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+|+.|+|++|.++....    .++..-++|++|++++|.+
T Consensus       124 ~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          124 TQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             TTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCB
T ss_pred             CcCCEEECCCCccceeCH----HHhccCCCccEEEecCCCe
Confidence            456666666666664322    2234445666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.21  E-value=1.5e-06  Score=72.93  Aligned_cols=86  Identities=20%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+....+....+.+       -+++.|.+..+.+ +        ++ ..+....+|+.|+|++|.+...
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l-------~~L~~L~l~~n~l-~--------~~-~~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEF-------EELEFLSTINVGL-T--------SI-ANLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTC-------TTCCEEECTTSCC-C--------CC-TTCCCCTTCCEEECCSSCCCSC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhc-------CCCcEEECcCCCC-C--------Cc-hhhhcCCCCCEEECCCCcccch
Confidence            4677777777766432222111111       2366666666665 3        12 4455566777777777777654


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ... ..   ...+ +|++|+|++|.|++
T Consensus        80 ~~~-~~---~~l~-~L~~L~ls~N~i~~  102 (149)
T 2je0_A           80 LEV-LA---EKCP-NLTHLNLSGNKIKD  102 (149)
T ss_dssp             THH-HH---HHCT-TCCEEECTTSCCCS
T ss_pred             HHH-Hh---hhCC-CCCEEECCCCcCCC
Confidence            211 11   1233 57777777777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.19  E-value=5e-07  Score=87.50  Aligned_cols=153  Identities=21%  Similarity=0.169  Sum_probs=89.9

Q ss_pred             CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056          226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  305 (414)
Q Consensus       226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g  305 (414)
                      ++++|+|++|.+..-...    .+..   .--+++.|.+..+.+ +    ...   ...+....+|++|+|++|++..-.
T Consensus        40 ~l~~L~Ls~N~l~~l~~~----~~~~---~l~~L~~L~L~~N~i-~----~i~---~~~~~~l~~L~~L~Ls~N~l~~~~  104 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAE----WTPT---RLTNLHSLLLSHNHL-N----FIS---SEAFVPVPNLRYLDLSSNHLHTLD  104 (361)
T ss_dssp             TCSEEECCSSCCCEECTT----SSSS---CCTTCCEEECCSSCC-C----EEC---TTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCEEECCCCCCCccChh----hhhh---cccccCEEECCCCcC-C----ccC---hhhccCCCCCCEEECCCCcCCcCC
Confidence            466777777766542211    0100   112356666666555 3    111   123556788999999999986532


Q ss_pred             HHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH---hhc----cccCCCcee
Q 015056          306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA---ASL----GKFFGTSVQ  376 (414)
Q Consensus       306 aklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~---~ag----vk~L~c~Lq  376 (414)
                      ..    .+...+ +|++|+|++|.|+.    ..-    .++...   .+|++|+|+  .+.   ...    ..  -.+|+
T Consensus       105 ~~----~~~~l~-~L~~L~L~~N~i~~----~~~----~~~~~l---~~L~~L~L~~N~l~~l~~~~~~~~~~--l~~L~  166 (361)
T 2xot_A          105 EF----LFSDLQ-ALEVLLLYNNHIVV----VDR----NAFEDM---AQLQKLYLSQNQISRFPVELIKDGNK--LPKLM  166 (361)
T ss_dssp             TT----TTTTCT-TCCEEECCSSCCCE----ECT----TTTTTC---TTCCEEECCSSCCCSCCGGGTC------CTTCC
T ss_pred             HH----HhCCCc-CCCEEECCCCcccE----ECH----HHhCCc---ccCCEEECCCCcCCeeCHHHhcCccc--CCcCC
Confidence            11    223344 89999999999987    211    244333   348888884  111   111    12  46789


Q ss_pred             EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .|+|++|.|+......++..  .+..|+.|+|++|.+
T Consensus       167 ~L~L~~N~l~~l~~~~~~~l--~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          167 LLDLSSNKLKKLPLTDLQKL--PAWVKNGLYLHNNPL  201 (361)
T ss_dssp             EEECCSSCCCCCCHHHHHHS--CHHHHTTEECCSSCE
T ss_pred             EEECCCCCCCccCHHHhhhc--cHhhcceEEecCCCc
Confidence            99999999998765555432  111257899999975

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.18  E-value=5.5e-07  Score=77.18  Aligned_cols=132  Identities=20%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      ..+++|++|+|++|.+.+..+......       --+++.|.+..+.+ +        ++ ..+....+|++|+|++|.+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~-------l~~L~~L~l~~n~l-~--------~~-~~~~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAE-------FVNLEFLSLINVGL-I--------SV-SNLPKLPKLKKLELSENRI   83 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGG-------GGGCCEEEEESSCC-C--------CC-SSCCCCSSCCEEEEESCCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHh-------CCCCCEEeCcCCCC-C--------Ch-hhhccCCCCCEEECcCCcC
Confidence            445678999999998763222211111       13477888887776 4        12 5567778999999999999


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-------hccccCC
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA-------SLGKFFG  372 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~-------agvk~L~  372 (414)
                      ..... .+.   ...+ +|++|+|++|.|+++-      .. ..+..   +.+|++|+|+  .+..       ....  -
T Consensus        84 ~~~~~-~~~---~~l~-~L~~L~Ls~N~l~~~~------~~-~~l~~---l~~L~~L~l~~N~l~~~~~~~~~~~~~--l  146 (168)
T 2ell_A           84 FGGLD-MLA---EKLP-NLTHLNLSGNKLKDIS------TL-EPLKK---LECLKSLDLFNCEVTNLNDYRESVFKL--L  146 (168)
T ss_dssp             CSCCC-HHH---HHCT-TCCEEECBSSSCCSSG------GG-GGGSS---CSCCCEEECCSSGGGTSTTHHHHHHTT--C
T ss_pred             chHHH-HHH---hhCC-CCCEEeccCCccCcch------hH-HHHhc---CCCCCEEEeeCCcCcchHHHHHHHHHh--C
Confidence            76421 112   2244 8999999999998721      01 23433   3458999984  2222       2333  4


Q ss_pred             CceeEEEeecccCCc
Q 015056          373 TSVQVLNIGAIGLGS  387 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~  387 (414)
                      .+|+.|+++.|.+..
T Consensus       147 ~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          147 PQLTYLDGYDREDQE  161 (168)
T ss_dssp             SSCCEETTEETTSCB
T ss_pred             ccCcEecCCCCChhh
Confidence            689999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.18  E-value=2.8e-07  Score=92.41  Aligned_cols=109  Identities=27%  Similarity=0.289  Sum_probs=62.8

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      +...++|+.|+|++|++.....    ..+...+ +|++|+|++|.+++      .. +...+.   .+.+|++|+|+  .
T Consensus       417 ~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~------~~-~p~~~~---~l~~L~~L~l~~n~  481 (570)
T 2z63_A          417 FLSLRNLIYLDISHTHTRVAFN----GIFNGLS-SLEVLKMAGNSFQE------NF-LPDIFT---ELRNLTFLDLSQCQ  481 (570)
T ss_dssp             TTTCTTCCEEECTTSCCEECCT----TTTTTCT-TCCEEECTTCEEGG------GE-ECSCCT---TCTTCCEEECTTSC
T ss_pred             hhcCCCCCEEeCcCCcccccch----hhhhcCC-cCcEEECcCCcCcc------cc-chhhhh---cccCCCEEECCCCc
Confidence            3445666666666666544321    1122233 66666666666653      00 112232   23458888885  2


Q ss_pred             HH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          363 IA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       363 l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +.    .++..  -.+|+.|+|++|.++...-    .++...++|++|++++|+++
T Consensus       482 l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          482 LEQLSPTAFNS--LSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CCEECTTTTTT--CTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBC
T ss_pred             cccCChhhhhc--ccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCCccc
Confidence            22    22333  4678889998888887543    24456678999999998863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.16  E-value=1.5e-07  Score=83.43  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=91.4

Q ss_pred             HHHHHHHhhCCCCCcEEEcccCCCChhH--HHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056          214 QALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  291 (414)
Q Consensus       214 ~~L~~~L~~n~~tLt~L~L~~~~L~~~~--m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL  291 (414)
                      .+....+.... .++.+++.++.+....  ++.+=..+..    -..++.|.+..+.+ +    ..+     .+....+|
T Consensus         8 ~~~~~~~~~~~-~l~~l~l~~~~l~~~~~~l~~l~~~~~~----l~~L~~L~ls~n~l-~----~l~-----~~~~l~~L   72 (198)
T 1ds9_A            8 KDAIRIFEERK-SVVATEAEKVELHGMIPPIEKMDATLST----LKACKHLALSTNNI-E----KIS-----SLSGMENL   72 (198)
T ss_dssp             HHHHHHHHHTT-CCCCTTCSEEECCBCCTTCCCCHHHHHH----TTTCSEEECSEEEE-S----CCC-----CHHHHTTC
T ss_pred             HHHHHHHHhcc-cccCcchheeEeccccCcHhhhhHHHhc----CCCCCEEECCCCCC-c----ccc-----ccccCCCC
Confidence            33444444443 6666666666554431  1111001111    02355666666665 3    122     33445788


Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHH--
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIA--  364 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~--  364 (414)
                      +.|+|++|++.+-.  .....   .+ .|++|+|++|.|++         + ..+....   +|++|+|+     .+.  
T Consensus        73 ~~L~l~~n~l~~l~--~~~~~---~~-~L~~L~L~~N~l~~---------l-~~~~~l~---~L~~L~l~~N~i~~~~~~  133 (198)
T 1ds9_A           73 RILSLGRNLIKKIE--NLDAV---AD-TLEELWISYNQIAS---------L-SGIEKLV---NLRVLYMSNNKITNWGEI  133 (198)
T ss_dssp             CEEEEEEEEECSCS--SHHHH---HH-HCSEEEEEEEECCC---------H-HHHHHHH---HSSEEEESEEECCCHHHH
T ss_pred             CEEECCCCCccccc--chhhc---CC-cCCEEECcCCcCCc---------C-CccccCC---CCCEEECCCCcCCchhHH
Confidence            88888888886311  11111   13 68888888888887         2 1343333   38888884     222  


Q ss_pred             hhccccCCCceeEEEeecccCCchh------HHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ASLGKFFGTSVQVLNIGAIGLGSSG------FRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ~agvk~L~c~Lq~L~L~~c~lg~~g------cqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +.+.+  -.+|+.|++++|.++...      ......++...++|+.||  +|.|
T Consensus       134 ~~l~~--l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          134 DKLAA--LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHHTT--TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             HHHhc--CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            23444  567888888888886653      345566777788888887  4544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.15  E-value=2.9e-06  Score=77.26  Aligned_cols=103  Identities=16%  Similarity=0.180  Sum_probs=74.7

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--  364 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--  364 (414)
                      .+|+.|+|++|.+..-..    ..+...+ +|++|+|++|.|+.    ..-    .++..   +.+|++|+|+  .+.  
T Consensus        40 ~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~----i~~----~~~~~---l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEP----GVFDSLI-NLKELYLGSNQLGA----LPV----GVFDS---LTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             TTCSEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC----CCT----TTTTT---CTTCCEEECCSSCCCCC
T ss_pred             CCCCEEEcCCCccCccCH----HHhhCcc-CCcEEECCCCCCCC----cCh----hhccc---CCCcCEEECCCCcCCcc
Confidence            889999999999976432    2234445 89999999999987    222    23333   3459999995  222  


Q ss_pred             --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                        ..+..  -.+|+.|+|++|.++..     ...+...++|++|+|++|+|+
T Consensus       104 ~~~~~~~--l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          104 PSAVFDR--LVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CTTTTTT--CTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCC
T ss_pred             ChhHhCc--chhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCC
Confidence              11223  57899999999999943     345677899999999999984

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.14  E-value=6.7e-07  Score=80.90  Aligned_cols=153  Identities=13%  Similarity=0.058  Sum_probs=93.0

Q ss_pred             hCCCCCcEEEcccCC-CChhHHHHHHhhhcCccccccccceeeccc-cccccCCCcccHHHHHHHHhcCCcccEEEccCC
Q 015056          222 QNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDI-SSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC  299 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~-L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t-c~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N  299 (414)
                      ++.++|++|+|++|. +..-.-.    ++.    .--.++.+.+.. ..+ +    ..+   ..++....+|+.|+|++|
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~----~f~----~l~~L~~L~l~~~n~l-~----~i~---~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESH----SFY----NLSKVTHIEIRNTRNL-T----YID---PDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTT----TEE----SCTTCCEEEEEEETTC-C----EEC---TTSEECCTTCCEEEEEEE
T ss_pred             cCCCCCcEEeCCCCCCcceeCHh----HcC----CCcCCcEEECCCCCCe-e----EcC---HHHhCCCCCCCEEeCCCC
Confidence            445689999999996 6432110    010    012477777776 444 3    111   124456788999999999


Q ss_pred             CCCchhHHHHHHHhccCCCCcc---EEeccCC-CCCCcccccCCCChhhhhhcCcccCCcc-eeehH-----HHHhhccc
Q 015056          300 HLDRDFGRMVFSSLLEASSSLS---ILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLR-LLNLS-----HIAASLGK  369 (414)
Q Consensus       300 ~L~d~gaklL~~~Ll~~~C~L~---~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~-~LnLs-----~l~~agvk  369 (414)
                      ++..-.      .+...+ .|+   +|+|++| .|++    ..-    .++..   +.+|+ +|+|+     .+......
T Consensus       116 ~l~~lp------~~~~l~-~L~~L~~L~l~~N~~l~~----i~~----~~~~~---l~~L~~~L~l~~n~l~~i~~~~~~  177 (239)
T 2xwt_C          116 GLKMFP------DLTKVY-STDIFFILEITDNPYMTS----IPV----NAFQG---LCNETLTLKLYNNGFTSVQGYAFN  177 (239)
T ss_dssp             CCCSCC------CCTTCC-BCCSEEEEEEESCTTCCE----ECT----TTTTT---TBSSEEEEECCSCCCCEECTTTTT
T ss_pred             CCcccc------cccccc-ccccccEEECCCCcchhh----cCc----ccccc---hhcceeEEEcCCCCCcccCHhhcC
Confidence            886522      133333 666   9999999 8886    222    13333   33488 88884     22222222


Q ss_pred             cCCCceeEEEeeccc-CCchhHHHHHHHHhcC-CCCcEEecCCCCCC
Q 015056          370 FFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKE-LKLVNINIRFKPIS  414 (414)
Q Consensus       370 ~L~c~Lq~L~L~~c~-lg~~gcqaLa~aL~~N-~~L~~LdLs~N~i~  414 (414)
                        ..+|+.|+|++|. ++...-.+    +..- ++|++||+++|+|+
T Consensus       178 --~~~L~~L~L~~n~~l~~i~~~~----~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          178 --GTKLDAVYLNKNKYLTVIDKDA----FGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             --TCEEEEEECTTCTTCCEECTTT----TTTCSBCCSEEECTTCCCC
T ss_pred             --CCCCCEEEcCCCCCcccCCHHH----hhccccCCcEEECCCCccc
Confidence              4689999999995 87644332    2333 78999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.13  E-value=1.7e-06  Score=91.76  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=24.0

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .+|+.|+|++|.|+.     +-..+...++|+.|+|++|.|+
T Consensus       261 ~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          261 SGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             TTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCC
T ss_pred             ccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCC
Confidence            456677777777663     2234566677778888877764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=8.4e-07  Score=97.78  Aligned_cols=37  Identities=8%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCC
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~  302 (414)
                      .++.|.+..+.+ +    ..+..   ++....+|+.|+|++|++.
T Consensus       674 ~L~~L~Ls~N~L-~----~lp~~---~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          674 NASTVTLSYNEI-Q----KFPTE---LFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             CEEEEECCSSCC-C----SCCHH---HHHTTCCCSEEECCSCCCS
T ss_pred             CcCEEEccCCcC-C----ccCHH---HHccCCCCCEEECCCCcCC
Confidence            466666666665 3    23322   2334566666666666665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.13  E-value=1.9e-06  Score=90.59  Aligned_cols=138  Identities=17%  Similarity=0.136  Sum_probs=91.0

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|+|++|.+..  +.   +       .--+++.|.+..+.+ +    .++. +    ..  +|++|+|++|++..-
T Consensus        80 ~~L~~L~Ls~N~l~~--ip---~-------~l~~L~~L~Ls~N~l-~----~ip~-l----~~--~L~~L~Ls~N~l~~l  135 (571)
T 3cvr_A           80 PQITVLEITQNALIS--LP---E-------LPASLEYLDACDNRL-S----TLPE-L----PA--SLKHLDVDNNQLTML  135 (571)
T ss_dssp             TTCSEEECCSSCCSC--CC---C-------CCTTCCEEECCSSCC-S----CCCC-C----CT--TCCEEECCSSCCSCC
T ss_pred             CCCCEEECcCCCCcc--cc---c-------ccCCCCEEEccCCCC-C----Ccch-h----hc--CCCEEECCCCcCCCC
Confidence            479999999998873  21   1       113588888888877 5    2332 2    11  899999999998652


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhhccccCCCceeEEEeec
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGA  382 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L~c~Lq~L~L~~  382 (414)
                      ..        ..+ +|+.|+|++|.|++ +   ..           .+.+|++|+|+  .+.. +.. +..+|+.|+|++
T Consensus       136 p~--------~l~-~L~~L~Ls~N~l~~-l---p~-----------~l~~L~~L~Ls~N~L~~-lp~-l~~~L~~L~Ls~  189 (571)
T 3cvr_A          136 PE--------LPA-LLEYINADNNQLTM-L---PE-----------LPTSLEVLSVRNNQLTF-LPE-LPESLEALDVST  189 (571)
T ss_dssp             CC--------CCT-TCCEEECCSSCCSC-C---CC-----------CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCS
T ss_pred             CC--------cCc-cccEEeCCCCccCc-C---CC-----------cCCCcCEEECCCCCCCC-cch-hhCCCCEEECcC
Confidence            11        234 89999999999997 2   11           12358899995  3332 222 348999999999


Q ss_pred             ccCCchhHHHHHHHH-hcCCCCcEEecCCCCCC
Q 015056          383 IGLGSSGFRVLQDGV-TKELKLVNINIRFKPIS  414 (414)
Q Consensus       383 c~lg~~gcqaLa~aL-~~N~~L~~LdLs~N~i~  414 (414)
                      |.|+.-..  +...| ..+.+|++|++++|+|+
T Consensus       190 N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          190 NLLESLPA--VPVRNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             SCCSSCCC--CC--------CCEEEECCSSCCC
T ss_pred             CCCCchhh--HHHhhhcccccceEEecCCCcce
Confidence            99986433  22222 23344599999999985

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.11  E-value=1.6e-06  Score=78.69  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA  364 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~  364 (414)
                      ...+|+.|+|++|++..-..    .++...+ .|++|+|++|.|+.    ..-+    ++..   +.+|++|+|+  .+.
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~~----~~~~~l~-~L~~L~Ls~N~l~~----l~~~----~f~~---l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELAP----DAFQGLR-SLNSLVLYGNKITE----LPKS----LFEG---LFSLQLLLLNANKIN  117 (220)
T ss_dssp             TCTTCCEEECCSSCCCEECT----TTTTTCS-SCCEEECCSSCCCC----CCTT----TTTT---CTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCCCcCH----HHhhCCc-CCCEEECCCCcCCc----cCHh----HccC---CCCCCEEECCCCCCC
Confidence            34567777777777653211    1223333 67777777777765    2111    2222   2336677764  111


Q ss_pred             ----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                          ++...  -.+|+.|+|++|.++.....    ++..-++|++|+|++|.+
T Consensus       118 ~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          118 CLRVDAFQD--LHNLNLLSLYDNKLQTIAKG----TFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCTTTTTT--CTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCE
T ss_pred             EeCHHHcCC--CCCCCEEECCCCcCCEECHH----HHhCCCCCCEEEeCCCCc
Confidence                12222  35677777777777664422    334456677777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.07  E-value=1e-06  Score=94.40  Aligned_cols=108  Identities=17%  Similarity=0.124  Sum_probs=55.1

Q ss_pred             HHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH
Q 015056          282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS  361 (414)
Q Consensus       282 as~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs  361 (414)
                      ...+....+|+.|+|++|++..-.     ..+...+ .|++|+|++|.|+.         +...+....   +|++|+|+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~~l~-~L~~L~Ls~N~l~~---------lp~~~~~l~---~L~~L~Ls  278 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNIS-----ANIFKYD-FLTRLYLNGNSLTE---------LPAEIKNLS---NLRVLDLS  278 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCC-----GGGGGCC-SCSCCBCTTSCCSC---------CCGGGGGGT---TCCEEECT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCC-----hhhcCCC-CCCEEEeeCCcCcc---------cChhhhCCC---CCCEEeCc
Confidence            334555666777777777765211     1222334 67777777777764         112332223   36667664


Q ss_pred             -----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          362 -----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       362 -----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                           .+-..+..  -.+|+.|+|++|.|+..     -..+..-++|++|+|++|.|+
T Consensus       279 ~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          279 HNRLTSLPAELGS--CFQLKYFYFFDNMVTTL-----PWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TSCCSSCCSSGGG--GTTCSEEECCSSCCCCC-----CSSTTSCTTCCCEECTTSCCC
T ss_pred             CCcCCccChhhcC--CCCCCEEECCCCCCCcc-----ChhhhcCCCccEEeCCCCccC
Confidence                 22122222  35667777777776532     222444466777777777663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.04  E-value=1.9e-06  Score=74.83  Aligned_cols=104  Identities=18%  Similarity=0.148  Sum_probs=73.8

Q ss_pred             cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH
Q 015056          287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA  364 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~  364 (414)
                      ...+|+.|+|++|++..-      ..+....-+|+.|+|++|.|++    .  .    .+.   ++.+|++|+|+  .+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls~N~l~~----~--~----~l~---~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRK----L--D----GFP---LLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC------CCGGGGTTCCSEEECCSSCCCE----E--C----CCC---CCSSCCEEECCSSCCC
T ss_pred             CcCCceEEEeeCCCCchh------HHhhhcCCCCCEEECCCCCCCc----c--c----ccc---cCCCCCEEECCCCccc
Confidence            457899999999999742      2233322289999999999998    2  2    332   33459999995  222


Q ss_pred             h---h-ccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          365 A---S-LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       365 ~---a-gvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .   . ...  -.+|+.|+|++|.+++...   -..+..-++|++|++++|.|+
T Consensus        78 ~~~~~~~~~--l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           78 RIGEGLDQA--LPDLTELILTNNSLVELGD---LDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             EECSCHHHH--CTTCCEEECCSCCCCCGGG---GGGGGGCTTCCEEECCSSGGG
T ss_pred             ccCcchhhc--CCCCCEEECCCCcCCcchh---hHhhhcCCCCCEEEecCCCCC
Confidence            1   1 123  5689999999999987443   124667789999999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.03  E-value=4.1e-06  Score=81.10  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=86.1

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHh-cCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLS-SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  336 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Ls-sn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~  336 (414)
                      .++.|.+....+ +    ...   ...+. ...+|+.|+|++|++..-...    ++...+ .|++|+|++|.|+.    
T Consensus        40 ~l~~L~Ls~N~l-~----~l~---~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~-~L~~L~Ls~N~l~~----  102 (361)
T 2xot_A           40 YTALLDLSHNNL-S----RLR---AEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVP-NLRYLDLSSNHLHT----  102 (361)
T ss_dssp             TCSEEECCSSCC-C----EEC---TTSSSSCCTTCCEEECCSSCCCEECTT----TTTTCT-TCCEEECCSSCCCE----
T ss_pred             CCCEEECCCCCC-C----ccC---hhhhhhcccccCEEECCCCcCCccChh----hccCCC-CCCEEECCCCcCCc----
Confidence            367888887776 4    122   12233 668999999999999754322    344455 89999999999997    


Q ss_pred             cCCCChhhhhhcCcccCCcceeehH--HH----HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056          337 YDRSGPLFSLGAGKSLQSLRLLNLS--HI----AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF  410 (414)
Q Consensus       337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~  410 (414)
                      ..-    .++..   +.+|++|+|+  .+    .++...  -.+|+.|+|++|.|+......+.. +..-++|++|||++
T Consensus       103 ~~~----~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~-~~~l~~L~~L~L~~  172 (361)
T 2xot_A          103 LDE----FLFSD---LQALEVLLLYNNHIVVVDRNAFED--MAQLQKLYLSQNQISRFPVELIKD-GNKLPKLMLLDLSS  172 (361)
T ss_dssp             ECT----TTTTT---CTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCS
T ss_pred             CCH----HHhCC---CcCCCEEECCCCcccEECHHHhCC--cccCCEEECCCCcCCeeCHHHhcC-cccCCcCCEEECCC
Confidence            222    23433   3459999995  22    223334  578999999999999744322211 13457899999999


Q ss_pred             CCCC
Q 015056          411 KPIS  414 (414)
Q Consensus       411 N~i~  414 (414)
                      |+|+
T Consensus       173 N~l~  176 (361)
T 2xot_A          173 NKLK  176 (361)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.99  E-value=1.5e-05  Score=84.47  Aligned_cols=51  Identities=14%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             CcceeehH--HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          354 SLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       354 ~L~~LnLs--~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +|++|+|+  .+..--  ..-.+|+.|+|++|.|+.-..        .-++|++|+|++|.|+
T Consensus       222 ~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          222 GLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             TCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCC
T ss_pred             CCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCC
Confidence            46777774  221100  113567788888877775322        2356778888887764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.96  E-value=6.4e-06  Score=83.05  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      .+|++|++++|.+..-.        ..+    -+++.|.+..+.+ +    +.+     .+....+|+.|+|++|++..-
T Consensus       111 ~~L~~L~l~~n~l~~l~--------~~~----~~L~~L~L~~n~l-~----~lp-----~~~~l~~L~~L~l~~N~l~~l  168 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALS--------DLP----PLLEYLGVSNNQL-E----KLP-----ELQNSSFLKIIDVDNNSLKKL  168 (454)
T ss_dssp             TTCCEEECCSSCCSCCC--------SCC----TTCCEEECCSSCC-S----SCC-----CCTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcEEECCCCccCccc--------CCC----CCCCEEECcCCCC-C----CCc-----ccCCCCCCCEEECCCCcCccc
Confidence            47888888888775411        001    2577888887776 4    232     156778888888888888641


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .         ....+|++|+|++|.|++
T Consensus       169 p---------~~~~~L~~L~L~~n~l~~  187 (454)
T 1jl5_A          169 P---------DLPPSLEFIAAGNNQLEE  187 (454)
T ss_dssp             C---------CCCTTCCEEECCSSCCSS
T ss_pred             C---------CCcccccEEECcCCcCCc
Confidence            1         112378888888888886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=3.3e-06  Score=77.07  Aligned_cols=98  Identities=5%  Similarity=-0.058  Sum_probs=60.6

Q ss_pred             CCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcc-cCCcceeehH---H
Q 015056          288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKS-LQSLRLLNLS---H  362 (414)
Q Consensus       288 n~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks-~~~L~~LnLs---~  362 (414)
                      +-.|++|+|+++.+.|+|++.|    ..-+ .|++|+|++| .||+++       + .+|+...+ ..+|++|||+   .
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L----~~~~-~L~~L~L~~C~~ItD~g-------L-~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM----EGLQ-YVEKIRLCKCHYIEDGC-------L-ERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG----TTCS-CCCEEEEESCTTCCHHH-------H-HHHHTCHHHHHHCCEEEEESCTT
T ss_pred             CceEeEEeCcCCCccHHHHHHh----cCCC-CCCEEEeCCCCccCHHH-------H-HHHHhcccccCCCCEEEcCCCCc
Confidence            3467777777777777777653    3334 7777778777 477711       2 34444321 1137777774   3


Q ss_pred             HHhhccccC--CCceeEEEeeccc-CCchh--HHHHHHHHh
Q 015056          363 IAASLGKFF--GTSVQVLNIGAIG-LGSSG--FRVLQDGVT  398 (414)
Q Consensus       363 l~~agvk~L--~c~Lq~L~L~~c~-lg~~g--cqaLa~aL~  398 (414)
                      |-|+|.+.|  -.+|++|+|++|. +|+.|  .+.|.++|.
T Consensus       127 ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP  167 (176)
T 3e4g_A          127 VTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLP  167 (176)
T ss_dssp             CCHHHHHHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCC
Confidence            445444444  4678889998885 77765  456655554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.90  E-value=6.4e-06  Score=83.02  Aligned_cols=98  Identities=15%  Similarity=0.057  Sum_probs=58.3

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS  275 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~  275 (414)
                      .+|+.|.+++. .+.  ..    . ..+.++|++|++++|.+..  +.         . .-..++.|.+..+.+ +    
T Consensus       131 ~~L~~L~L~~n~l~~--lp----~-~~~l~~L~~L~l~~N~l~~--lp---------~-~~~~L~~L~L~~n~l-~----  186 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK--LP----E-LQNSSFLKIIDVDNNSLKK--LP---------D-LPPSLEFIAAGNNQL-E----  186 (454)
T ss_dssp             TTCCEEECCSSCCSS--CC----C-CTTCTTCCEEECCSSCCSC--CC---------C-CCTTCCEEECCSSCC-S----
T ss_pred             CCCCEEECcCCCCCC--Cc----c-cCCCCCCCEEECCCCcCcc--cC---------C-CcccccEEECcCCcC-C----
Confidence            35666666655 221  11    1 3555688888888887753  11         0 012577888887776 4    


Q ss_pred             ccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       276 ~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ..+     .+....+|+.|+|++|++..-.         ...-+|++|+|++|.|+.
T Consensus       187 ~l~-----~~~~l~~L~~L~l~~N~l~~l~---------~~~~~L~~L~l~~n~l~~  229 (454)
T 1jl5_A          187 ELP-----ELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILEE  229 (454)
T ss_dssp             SCC-----CCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCSS
T ss_pred             cCc-----cccCCCCCCEEECCCCcCCcCC---------CCcCcccEEECcCCcCCc
Confidence            122     1466778888888888775311         111277777777777774

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.90  E-value=4.3e-06  Score=72.33  Aligned_cols=16  Identities=19%  Similarity=0.241  Sum_probs=8.2

Q ss_pred             cCCcccEEEccCCCCC
Q 015056          287 SGRSLCSLKLRHCHLD  302 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~  302 (414)
                      ...+|++|+|++|.+.
T Consensus        50 ~l~~L~~L~l~~n~l~   65 (177)
T 2o6r_A           50 KLTQLTKLSLSQNQIQ   65 (177)
T ss_dssp             TCTTCSEEECCSSCCC
T ss_pred             CcccccEEECCCCcce
Confidence            3445555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.90  E-value=4.7e-06  Score=73.80  Aligned_cols=37  Identities=14%  Similarity=0.150  Sum_probs=19.1

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+|+.|+|++|.++...-    .++..-++|++|++++|.+
T Consensus       102 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCB
T ss_pred             CCCCEEECCCCcCCeeCH----HHhhcCCCCCEEEeCCCCc
Confidence            455666666666554221    1223345566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.90  E-value=1.5e-05  Score=71.10  Aligned_cols=102  Identities=20%  Similarity=0.208  Sum_probs=54.4

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--  364 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--  364 (414)
                      ++|+.|+|++|.+..-.     ..+.+.+ .|++|+|++|.|++    ..-    .++....   +|++|+|+  .+.  
T Consensus        31 ~~l~~L~L~~n~i~~ip-----~~~~~l~-~L~~L~Ls~N~i~~----i~~----~~f~~l~---~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-----KELSNYK-HLTLIDLSNNRIST----LSN----QSFSNMT---QLLTLILSYNRLRCI   93 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-----GGGGGCT-TCCEEECCSSCCCC----CCT----TTTTTCT---TCCEEECCSSCCCBC
T ss_pred             CCCCEEECCCCcCchhH-----HHhhccc-CCCEEECCCCcCCE----eCH----hHccCCC---CCCEEECCCCccCEe
Confidence            35667777777665211     2344444 66777777777765    111    1332222   36666663  111  


Q ss_pred             --hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 --ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 --~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                        ++...  -.+|+.|+|++|.++....    .++..-++|++|++++|.+
T Consensus        94 ~~~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           94 PPRTFDG--LKSLRLLSLHGNDISVVPE----GAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CTTTTTT--CTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECCSSCE
T ss_pred             CHHHhCC--CCCCCEEECCCCCCCeeCh----hhhhcCccccEEEeCCCCe
Confidence              12222  3567777777777764322    1233446677777777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.89  E-value=9.4e-06  Score=73.54  Aligned_cols=104  Identities=17%  Similarity=0.140  Sum_probs=74.3

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA-  365 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~-  365 (414)
                      .+|+.|+|++|.+..-..    .++...+ .|++|+|++|.|++    ..-    .++....   +|++|+|+  .+.. 
T Consensus        32 ~~l~~L~l~~n~i~~i~~----~~~~~l~-~L~~L~Ls~N~i~~----~~~----~~~~~l~---~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP----GAFSPYK-KLRRIDLSNNQISE----LAP----DAFQGLR---SLNSLVLYGNKITEL   95 (220)
T ss_dssp             TTCCEEECCSSCCCEECT----TSSTTCT-TCCEEECCSSCCCE----ECT----TTTTTCS---SCCEEECCSSCCCCC
T ss_pred             cCCCEEECCCCcCCCcCH----hHhhCCC-CCCEEECCCCcCCC----cCH----HHhhCCc---CCCEEECCCCcCCcc
Confidence            689999999999975332    1233444 89999999999997    212    2443334   49999995  2221 


Q ss_pred             ---hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 ---SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 ---agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                         ....  -.+|+.|+|++|.++....    .++..-++|++|+|++|+|+
T Consensus        96 ~~~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           96 PKSLFEG--LFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CTTTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred             CHhHccC--CCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCC
Confidence               1122  4789999999999987543    34556789999999999874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=3.9e-06  Score=76.63  Aligned_cols=78  Identities=15%  Similarity=0.114  Sum_probs=61.3

Q ss_pred             CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---HHHhhccccCC------CceeEEEeeccc-CCch
Q 015056          319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFFG------TSVQVLNIGAIG-LGSS  388 (414)
Q Consensus       319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~agvk~L~------c~Lq~L~L~~c~-lg~~  388 (414)
                      .|++||||+|.||+      -+ + .+|.   .+.+|++|+|+   .+.|++.+.+.      .+|++|+|++|. +|+.
T Consensus        62 ~L~~LDLs~~~Itd------~G-L-~~L~---~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSCIMS------IG-F-DHME---GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCCCCG------GG-G-GGGT---TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCCccH------HH-H-HHhc---CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            79999999999998      22 2 3453   45569999995   56676666662      269999999995 9999


Q ss_pred             hHHHHHHHHhcCCCCcEEecCCC
Q 015056          389 GFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       389 gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                      |-++|+.    -++|++|+|++-
T Consensus       131 Gl~~L~~----~~~L~~L~L~~c  149 (176)
T 3e4g_A          131 GIIALHH----FRNLKYLFLSDL  149 (176)
T ss_dssp             HHHHGGG----CTTCCEEEEESC
T ss_pred             HHHHHhc----CCCCCEEECCCC
Confidence            9998763    489999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.85  E-value=2.2e-06  Score=77.48  Aligned_cols=152  Identities=12%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc-cccCCCcccHHHHHHHHhcCCcccEEEccC-CCCC
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLD  302 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~-~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~-N~L~  302 (414)
                      ++|++|+|++|.+..-.-.    ++..    --+++.+.+..+. + +    ...   ...+....+|++|+|++ |++.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~----~~~~----l~~L~~L~l~~n~~l-~----~i~---~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH----AFSN----LPNISRIYVSIDVTL-Q----QLE---SHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT----TTTT----CTTCCEEEEECCSSC-C----EEC---TTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceEECHH----HccC----CCCCcEEeCCCCCCc-c----eeC---HhHcCCCcCCcEEECCCCCCee
Confidence            3789999999987653211    1111    1347888888775 4 3    111   12456778999999999 9986


Q ss_pred             chhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---HHHh----hccccCCCce
Q 015056          303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAA----SLGKFFGTSV  375 (414)
Q Consensus       303 d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---~l~~----agvk~L~c~L  375 (414)
                      .-..    .++...+ +|++|+|++|.|++    .  .    .+....++..|++|+|+   .+..    +..+  -.+|
T Consensus        95 ~i~~----~~f~~l~-~L~~L~l~~n~l~~----l--p----~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~--l~~L  157 (239)
T 2xwt_C           95 YIDP----DALKELP-LLKFLGIFNTGLKM----F--P----DLTKVYSTDIFFILEITDNPYMTSIPVNAFQG--LCNE  157 (239)
T ss_dssp             EECT----TSEECCT-TCCEEEEEEECCCS----C--C----CCTTCCBCCSEEEEEEESCTTCCEECTTTTTT--TBSS
T ss_pred             EcCH----HHhCCCC-CCCEEeCCCCCCcc----c--c----ccccccccccccEEECCCCcchhhcCcccccc--hhcc
Confidence            4321    1223334 89999999999997    1  1    13233342224488884   2211    1222  4678


Q ss_pred             e-EEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC-CC
Q 015056          376 Q-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP-IS  414 (414)
Q Consensus       376 q-~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~-i~  414 (414)
                      + +|++++|+++.-...    +. ...+|++|++++|+ |+
T Consensus       158 ~~~L~l~~n~l~~i~~~----~~-~~~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          158 TLTLKLYNNGFTSVQGY----AF-NGTKLDAVYLNKNKYLT  193 (239)
T ss_dssp             EEEEECCSCCCCEECTT----TT-TTCEEEEEECTTCTTCC
T ss_pred             eeEEEcCCCCCcccCHh----hc-CCCCCCEEEcCCCCCcc
Confidence            9 999999999865432    22 23689999999994 63

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.82  E-value=1.2e-05  Score=71.06  Aligned_cols=104  Identities=22%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh-
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA-  365 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~-  365 (414)
                      .+|++|+|++|.+..-...    .+...+ +|++|+|++|.|++    ..-    .++...   .+|++|+|+  .+.. 
T Consensus        28 ~~l~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~----~~~----~~~~~l---~~L~~L~Ls~n~l~~~   91 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNG----VFDELT-SLTQLYLGGNKLQS----LPN----GVFNKL---TSLTYLNLSTNQLQSL   91 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT----TTTTCT-TCSEEECCSSCCCC----CCT----TTTTTC---TTCCEEECCSSCCCCC
T ss_pred             CCCcEEEcCCCccCcCChh----hhcccc-cCcEEECCCCccCc----cCh----hhcCCC---CCcCEEECCCCcCCcc
Confidence            5789999999998743322    123344 89999999999987    211    233333   348888885  2221 


Q ss_pred             ---hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 ---SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 ---agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                         .+.+  -.+|+.|+|++|.++....    .++..-++|++|++++|+|+
T Consensus        92 ~~~~~~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           92 PNGVFDK--LTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CTTTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCS
T ss_pred             CHhHhcC--ccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccc
Confidence               1223  5689999999999986442    23456689999999999874

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.82  E-value=1.3e-06  Score=77.42  Aligned_cols=123  Identities=15%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|+|++|.+..-  ..+. .+       .+++.|.+..+.+ +    ..+    ..+....+|+.|+|++|++..-
T Consensus        48 ~~L~~L~ls~n~l~~l--~~~~-~l-------~~L~~L~l~~n~l-~----~l~----~~~~~~~~L~~L~L~~N~l~~l  108 (198)
T 1ds9_A           48 KACKHLALSTNNIEKI--SSLS-GM-------ENLRILSLGRNLI-K----KIE----NLDAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             TTCSEEECSEEEESCC--CCHH-HH-------TTCCEEEEEEEEE-C----SCS----SHHHHHHHCSEEEEEEEECCCH
T ss_pred             CCCCEEECCCCCCccc--cccc-cC-------CCCCEEECCCCCc-c----ccc----chhhcCCcCCEEECcCCcCCcC
Confidence            5788888888877652  1111 11       2366777777766 4    122    2333346899999999999762


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHhh--------------cc
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAAS--------------LG  368 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~a--------------gv  368 (414)
                            ..+...+ .|+.|+|++|.|+++-.      . ..+....   +|++|+|+  .+...              ..
T Consensus       109 ------~~~~~l~-~L~~L~l~~N~i~~~~~------~-~~l~~l~---~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A          109 ------SGIEKLV-NLRVLYMSNNKITNWGE------I-DKLAALD---KLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             ------HHHHHHH-HSSEEEESEEECCCHHH------H-HHHTTTT---TCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             ------CccccCC-CCCEEECCCCcCCchhH------H-HHHhcCC---CCCEEEecCCccccccccccchHHHHHHHHH
Confidence                  2344444 79999999999987211      1 2443334   48999995  33222              33


Q ss_pred             ccCCCceeEEEeecccCCc
Q 015056          369 KFFGTSVQVLNIGAIGLGS  387 (414)
Q Consensus       369 k~L~c~Lq~L~L~~c~lg~  387 (414)
                      .  -.+|+.||  ++.++.
T Consensus       172 ~--l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          172 R--LPNLKKLD--GMPVDV  186 (198)
T ss_dssp             H--CSSCSEEC--CGGGTT
T ss_pred             h--CCCcEEEC--CcccCH
Confidence            3  67889988  666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.75  E-value=2.1e-05  Score=78.90  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=82.9

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  337 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~  337 (414)
                      .+++|.+..-.+ +    +++   ...+....+|++|+|++|++..-..    .++...+ +|++|+|++|.|++    .
T Consensus        53 ~~~~LdLs~N~i-~----~l~---~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~-~L~~L~Ls~N~l~~----l  115 (635)
T 4g8a_A           53 STKNLDLSFNPL-R----HLG---SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLS-HLSTLILTGNPIQS----L  115 (635)
T ss_dssp             TCCEEECTTSCC-C----EEC---TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCT-TCCEEECTTCCCCE----E
T ss_pred             CCCEEEeeCCCC-C----CCC---HHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCC-CCCEEEccCCcCCC----C
Confidence            467888876655 3    222   2345677899999999998853111    1233344 89999999999987    2


Q ss_pred             CCCChhhhhhcCcccCCcceeehH--HH---Hh-hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS--HI---AA-SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs--~l---~~-agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                      .-    .++....   +|++|+|+  .+   .. +..+  -.+|++|+|++|.++...   +...+..-++|++|++++|
T Consensus       116 ~~----~~f~~L~---~L~~L~Ls~N~l~~l~~~~~~~--L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          116 AL----GAFSGLS---SLQKLVAVETNLASLENFPIGH--LKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CG----GGGTTCT---TCCEEECTTSCCCCSTTCCCTT--CTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSS
T ss_pred             CH----HHhcCCC---CCCEEECCCCcCCCCChhhhhc--CcccCeeccccCccccCC---CchhhccchhhhhhcccCc
Confidence            21    2453334   49999995  22   11 2233  478999999999987532   1123444578999999999


Q ss_pred             CCC
Q 015056          412 PIS  414 (414)
Q Consensus       412 ~i~  414 (414)
                      +|.
T Consensus       184 ~l~  186 (635)
T 4g8a_A          184 KIQ  186 (635)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.75  E-value=1.9e-05  Score=71.49  Aligned_cols=105  Identities=11%  Similarity=0.109  Sum_probs=73.3

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH---
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI---  363 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l---  363 (414)
                      ..++.|+|++|.+..-...   ..+...+ .|++|+|++|.|++    ..-    .++....   +|++|+|+  .+   
T Consensus        32 ~~~~~L~L~~N~l~~~~~~---~~~~~l~-~L~~L~L~~N~i~~----i~~----~~~~~l~---~L~~L~Ls~N~l~~~   96 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEAT---GIFKKLP-QLRKINFSNNKITD----IEE----GAFEGAS---GVNEILLTSNRLENV   96 (220)
T ss_dssp             TTCSEEECCSSCCCEECCC---CCGGGCT-TCCEEECCSSCCCE----ECT----TTTTTCT---TCCEEECCSSCCCCC
T ss_pred             CCCCEEEcCCCcCCccCch---hhhccCC-CCCEEECCCCcCCE----ECH----HHhCCCC---CCCEEECCCCccCcc
Confidence            4568999999999754211   0123444 89999999999997    222    2443334   49999995  22   


Q ss_pred             -HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          364 -AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       364 -~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                       .++...  -.+|++|+|++|.++...-    .++..-++|++|+|++|+|+
T Consensus        97 ~~~~~~~--l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           97 QHKMFKG--LESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CGGGGTT--CSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCC
T ss_pred             CHhHhcC--CcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCC
Confidence             222333  5789999999999987543    23456688999999999884

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.64  E-value=3.1e-05  Score=80.88  Aligned_cols=99  Identities=22%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHH
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIA  364 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~  364 (414)
                      .|+.|+|++|.+..-      ..+...+ +|++|+|++|.|+.         +...+....   +|++|+|+     .+-
T Consensus       442 ~L~~L~Ls~n~l~~l------p~~~~l~-~L~~L~Ls~N~l~~---------lp~~~~~l~---~L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL------CHLEQLL-LVTHLDLSHNRLRA---------LPPALAALR---CLEVLQASDNALENVD  502 (567)
T ss_dssp             TCSEEECTTSCCSSC------CCGGGGT-TCCEEECCSSCCCC---------CCGGGGGCT---TCCEEECCSSCCCCCG
T ss_pred             CceEEEecCCCCCCC------cCccccc-cCcEeecCcccccc---------cchhhhcCC---CCCEEECCCCCCCCCc
Confidence            588899999888642      1244444 78889999998886         223444334   48888884     222


Q ss_pred             hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                       .+..  -.+|+.|+|++|.++....   -..+..-++|++|+|++|+|
T Consensus       503 -~l~~--l~~L~~L~Ls~N~l~~~~~---p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          503 -GVAN--LPRLQELLLCNNRLQQSAA---IQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             -GGTT--CSSCCEEECCSSCCCSSST---TGGGGGCTTCCEEECTTSGG
T ss_pred             -ccCC--CCCCcEEECCCCCCCCCCC---cHHHhcCCCCCEEEecCCcC
Confidence             3333  5678899999998876530   23345667899999998876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.60  E-value=5e-05  Score=66.17  Aligned_cols=119  Identities=15%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056          257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  336 (414)
Q Consensus       257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~  336 (414)
                      |..+.+.+....+ +    +++.++      ..+|+.|+|++|.+..-..    ..+...+ +|++|+|++|+|++    
T Consensus         9 C~~~~l~~s~n~l-~----~ip~~~------~~~l~~L~L~~N~i~~~~~----~~~~~l~-~L~~L~Ls~N~l~~----   68 (170)
T 3g39_A            9 CSGTTVDCSGKSL-A----SVPTGI------PTTTQVLYLYDNQITKLEP----GVFDRLT-QLTRLDLDNNQLTV----   68 (170)
T ss_dssp             EETTEEECTTSCC-S----SCCSCC------CTTCSEEECCSSCCCCCCT----TTTTTCT-TCSEEECCSSCCCC----
T ss_pred             cCCCEEEeCCCCc-C----ccCccC------CCCCcEEEcCCCcCCccCh----hhhcCcc-cCCEEECCCCCcCc----
Confidence            5555666655554 3    233222      2677888888887754211    1122333 78888888888876    


Q ss_pred             cCCCChhhhhhcCcccCCcceeehH--HHH---h-hccccCCCceeEEEeecccCCchh--HHHHHHHHhcCCCCc
Q 015056          337 YDRSGPLFSLGAGKSLQSLRLLNLS--HIA---A-SLGKFFGTSVQVLNIGAIGLGSSG--FRVLQDGVTKELKLV  404 (414)
Q Consensus       337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l~---~-agvk~L~c~Lq~L~L~~c~lg~~g--cqaLa~aL~~N~~L~  404 (414)
                      ..-    .++..   +.+|++|+|+  .+.   . +...  -.+|+.|+|++|.+.-.+  -..+..-+..+..+.
T Consensus        69 l~~----~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~  135 (170)
T 3g39_A           69 LPA----GVFDK---LTQLTQLSLNDNQLKSIPRGAFDN--LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV  135 (170)
T ss_dssp             CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             cCh----hhccC---CCCCCEEECCCCccCEeCHHHhcC--CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence            211    12322   2347777774  111   1 1222  356777777777776553  456666666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.42  E-value=0.00022  Score=63.41  Aligned_cols=97  Identities=20%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----h
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----A  365 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~  365 (414)
                      +.+++++|.+..-..     .+  ++ +|++|+|++|.|+.    ..     .++....   +|++|+|+  .+.    +
T Consensus        13 ~~l~~~~~~l~~ip~-----~~--~~-~l~~L~L~~n~i~~----ip-----~~~~~l~---~L~~L~Ls~N~i~~i~~~   72 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-----GI--PR-DVTELYLDGNQFTL----VP-----KELSNYK---HLTLIDLSNNRISTLSNQ   72 (193)
T ss_dssp             TEEECTTSCCSSCCS-----CC--CT-TCCEEECCSSCCCS----CC-----GGGGGCT---TCCEEECCSSCCCCCCTT
T ss_pred             CEEEcCCCCCCcCCC-----CC--CC-CCCEEECCCCcCch----hH-----HHhhccc---CCCEEECCCCcCCEeCHh
Confidence            578899988864221     11  23 89999999999997    21     3454444   49999995  222    2


Q ss_pred             hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +...  -.+|++|+|++|.++....    .++..-++|++|+|++|+|+
T Consensus        73 ~f~~--l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           73 SFSN--MTQLLTLILSYNRLRCIPP----RTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             TTTT--CTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred             HccC--CCCCCEEECCCCccCEeCH----HHhCCCCCCCEEECCCCCCC
Confidence            2333  5789999999999998553    24556789999999999984

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.41  E-value=8.9e-05  Score=63.98  Aligned_cols=127  Identities=19%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             cccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc
Q 015056          257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK  336 (414)
Q Consensus       257 C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~  336 (414)
                      |..+.+......+ +    +.+.+      ...+|+.|+|++|++..-...    .+...+ .|++|+|++|.|++    
T Consensus         7 C~~~~l~~~~~~l-~----~~p~~------~~~~l~~L~l~~n~l~~~~~~----~~~~l~-~L~~L~l~~n~l~~----   66 (177)
T 2o6r_A            7 CSGTEIRCNSKGL-T----SVPTG------IPSSATRLELESNKLQSLPHG----VFDKLT-QLTKLSLSQNQIQS----   66 (177)
T ss_dssp             EETTEEECCSSCC-S----SCCTT------CCTTCSEEECCSSCCCCCCTT----TTTTCT-TCSEEECCSSCCCC----
T ss_pred             eCCCEEEecCCCC-c----cCCCC------CCCCCcEEEeCCCcccEeCHH----HhcCcc-cccEEECCCCcceE----
Confidence            5555666655554 3    22222      136899999999999743221    123334 89999999999997    


Q ss_pred             cCCCChhhhhhcCcccCCcceeehH--HHHhhccccC--CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          337 YDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFF--GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       337 ~~c~~ls~aL~~nks~~~L~~LnLs--~l~~agvk~L--~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      ..-    .++..   +.+|++|+|+  .+..-....+  -.+|+.|+|++|.++....    .++...++|++|++++|+
T Consensus        67 ~~~----~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           67 LPD----GVFDK---LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCT----TTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSC
T ss_pred             eCh----hHccC---CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH----HHhcCCcccCEEEecCCC
Confidence            211    23333   3459999995  2221111111  4789999999999986432    334566899999999998


Q ss_pred             CC
Q 015056          413 IS  414 (414)
Q Consensus       413 i~  414 (414)
                      +.
T Consensus       136 ~~  137 (177)
T 2o6r_A          136 WD  137 (177)
T ss_dssp             BC
T ss_pred             ee
Confidence            73

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.41  E-value=0.00013  Score=64.02  Aligned_cols=39  Identities=13%  Similarity=0.057  Sum_probs=19.5

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      .+|+.|+|++|++..-..    ..+...+ .|++|+|++|.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEP----GVFDHLV-NLQQLYFNSNKLTA   71 (174)
T ss_dssp             TTCSEEECCSSCCCCCCT----TTTTTCT-TCCEEECCSSCCCC
T ss_pred             CCCcEEEeCCCCccccCH----HHhcCCc-CCCEEECCCCCCCc
Confidence            456666666666543211    1122233 56666666666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.37  E-value=0.0002  Score=63.22  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=58.3

Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH----Hh
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI----AA  365 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l----~~  365 (414)
                      +.+++++|.+..--.     .+  +. .+++|+|++|.|++    ..-.   .++....   +|++|+|+  .+    .+
T Consensus        11 ~~l~~s~~~l~~ip~-----~~--~~-~l~~L~l~~n~i~~----~~~~---~~~~~l~---~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-----DI--PL-HTTELLLNDNELGR----ISSD---GLFGRLP---HLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TEEECTTSCCSSCCS-----CC--CT-TCSEEECCSCCCCS----BCCS---CSGGGCT---TCCEEECCSSCCCCBCTT
T ss_pred             CEEEcCCCCcCcCcc-----CC--CC-CCCEEECCCCcCCc----cCCc---cccccCC---CCCEEECCCCCCCCcCHh
Confidence            466677766642111     00  22 67777777777765    1111   1232223   37777774  11    12


Q ss_pred             hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +...  -.+|+.|+|++|.++....    .++..-++|++|++++|+|+
T Consensus        73 ~~~~--l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           73 AFEG--ASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             TTTT--CTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCC
T ss_pred             HcCC--cccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCC
Confidence            2333  4678899999999887543    23455688999999999984

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.34  E-value=7.2e-05  Score=78.09  Aligned_cols=118  Identities=16%  Similarity=0.099  Sum_probs=81.8

Q ss_pred             cceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccC
Q 015056          259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYD  338 (414)
Q Consensus       259 lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~  338 (414)
                      ++.|.+..+.+ +    +.+    . +....+|+.|+|++|.+..-     -..+...+ +|++|+|++|.|++      
T Consensus       443 L~~L~Ls~n~l-~----~lp----~-~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~-~L~~L~Ls~N~l~~------  500 (567)
T 1dce_A          443 VRVLHLAHKDL-T----VLC----H-LEQLLLVTHLDLSHNRLRAL-----PPALAALR-CLEVLQASDNALEN------  500 (567)
T ss_dssp             CSEEECTTSCC-S----SCC----C-GGGGTTCCEEECCSSCCCCC-----CGGGGGCT-TCCEEECCSSCCCC------
T ss_pred             ceEEEecCCCC-C----CCc----C-ccccccCcEeecCccccccc-----chhhhcCC-CCCEEECCCCCCCC------
Confidence            67788888777 4    232    2 56778999999999999721     12455566 99999999999997      


Q ss_pred             CCChhhhhhcCcccCCcceeehH-----HH--HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEec
Q 015056          339 RSGPLFSLGAGKSLQSLRLLNLS-----HI--AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI  408 (414)
Q Consensus       339 c~~ls~aL~~nks~~~L~~LnLs-----~l--~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdL  408 (414)
                         +. .+....   +|++|+|+     .+  -+.+..  -.+|+.|+|++|.++..-- .+...+..-++|+.||+
T Consensus       501 ---lp-~l~~l~---~L~~L~Ls~N~l~~~~~p~~l~~--l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 ---VD-GVANLP---RLQELLLCNNRLQQSAAIQPLVS--CPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ---CG-GGTTCS---SCCEEECCSSCCCSSSTTGGGGG--CTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred             ---Cc-ccCCCC---CCcEEECCCCCCCCCCCcHHHhc--CCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence               22 343334   59999995     22  344445  6789999999999976421 22233344578888875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.28  E-value=0.00011  Score=78.84  Aligned_cols=87  Identities=20%  Similarity=0.127  Sum_probs=58.1

Q ss_pred             HHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH-----HHHhhccccCCCceeEEEeec
Q 015056          308 MVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HIAASLGKFFGTSVQVLNIGA  382 (414)
Q Consensus       308 lL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~  382 (414)
                      +.-..+...+ .|++|+|++|.|+.         +...+..   +.+|++|+|+     .+-..+.+  -.+|+.|+|++
T Consensus       215 ~~~~~~~~l~-~L~~L~Ls~n~l~~---------l~~~~~~---l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~Ls~  279 (727)
T 4b8c_D          215 MPKDSKYDDQ-LWHALDLSNLQIFN---------ISANIFK---YDFLTRLYLNGNSLTELPAEIKN--LSNLRVLDLSH  279 (727)
T ss_dssp             -------CCC-CCCEEECTTSCCSC---------CCGGGGG---CCSCSCCBCTTSCCSCCCGGGGG--GTTCCEEECTT
T ss_pred             cChhhhccCC-CCcEEECCCCCCCC---------CChhhcC---CCCCCEEEeeCCcCcccChhhhC--CCCCCEEeCcC
Confidence            3344455555 89999999999986         2122322   3459999995     23333444  57899999999


Q ss_pred             ccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          383 IGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       383 c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |.|+.     |-..+..-.+|++|+|++|.|+
T Consensus       280 N~l~~-----lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          280 NRLTS-----LPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             SCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred             CcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence            99984     2334556688999999999885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.09  E-value=0.00046  Score=60.02  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=59.4

Q ss_pred             ccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----
Q 015056          291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----  364 (414)
Q Consensus       291 L~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----  364 (414)
                      .+.+++++|.+..-..     .+  + -.|++|+|++|.|++    ..-    .++..   +.+|++|+|+  .+.    
T Consensus        11 ~~~l~~s~n~l~~ip~-----~~--~-~~l~~L~L~~N~i~~----~~~----~~~~~---l~~L~~L~Ls~N~l~~l~~   71 (170)
T 3g39_A           11 GTTVDCSGKSLASVPT-----GI--P-TTTQVLYLYDNQITK----LEP----GVFDR---LTQLTRLDLDNNQLTVLPA   71 (170)
T ss_dssp             TTEEECTTSCCSSCCS-----CC--C-TTCSEEECCSSCCCC----CCT----TTTTT---CTTCSEEECCSSCCCCCCT
T ss_pred             CCEEEeCCCCcCccCc-----cC--C-CCCcEEEcCCCcCCc----cCh----hhhcC---cccCCEEECCCCCcCccCh
Confidence            4678888887754221     11  2 378888888888887    211    23333   3348888884  211    


Q ss_pred             hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++..+  -.+|+.|+|++|.|+..--    .++..-++|++|+|++|.+
T Consensus        72 ~~f~~--l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           72 GVFDK--LTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTT--CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred             hhccC--CCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCC
Confidence            11122  4578888888888875322    2344557788888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.59  E-value=0.0003  Score=67.60  Aligned_cols=110  Identities=18%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             HHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccC-CCCCCcccccCCCChhhhhhcCcccCCcceeehH-
Q 015056          284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-  361 (414)
Q Consensus       284 ~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~-n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-  361 (414)
                      ++....+|+.|++++|++..-...    ...+.. .+..|++++ +.|+.    ....    ++....  ..|+.|+|+ 
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~----~~~~~~-~l~~l~l~~~~~i~~----l~~~----~f~~~~--~~l~~L~L~~  163 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDV----HKIHSL-QKVLLDIQDNINIHT----IERN----SFVGLS--FESVILWLNK  163 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCC----TTCCBS-SCEEEEEESCTTCCE----ECTT----SSTTSB--SSCEEEECCS
T ss_pred             hhhhccccccccccccccccCCch----hhcccc-hhhhhhhcccccccc----cccc----chhhcc--hhhhhhcccc
Confidence            345667889999999887532211    011112 456677755 45554    1111    111111  135566663 


Q ss_pred             ----HHHhhccccCCCceeEEEeec-ccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          362 ----HIAASLGKFFGTSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       362 ----~l~~agvk~L~c~Lq~L~L~~-c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                          .+......  .+++++|+++. |.++.---    .++..-++|++||+++|+|+
T Consensus       164 N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          164 NGIQEIHNSAFN--GTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCCCEECTTSST--TEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCCC
T ss_pred             ccccCCChhhcc--ccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCcC
Confidence                22222222  56788888864 66665322    12344567888888888774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.58  E-value=0.0015  Score=61.97  Aligned_cols=98  Identities=22%  Similarity=0.118  Sum_probs=65.1

Q ss_pred             HhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--
Q 015056          285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--  361 (414)
Q Consensus       285 Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--  361 (414)
                      |....+|+.|+|++ |++..-..    ..+.+.+ +|+.|+|++|+|++    ..-    .++....   +|++|||+  
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~----~~~~~l~-~L~~L~l~~N~l~~----~~~----~~~~~l~---~L~~L~l~~N   90 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL----RDLRGLG-ELRNLTIVKSGLRF----VAP----DAFHFTP---RLSRLNLSFN   90 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG----GGSCSCC-CCSEEECCSSCCCE----ECT----TGGGSCS---CCCEEECCSS
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh----hHhcccc-CCCEEECCCCccce----eCH----HHhcCCc---CCCEEeCCCC
Confidence            67778999999996 99864322    2245556 89999999999997    222    2444444   49999995  


Q ss_pred             HHH---hhccccCCCceeEEEeecccCCchhH-HHHHHHHhcC
Q 015056          362 HIA---ASLGKFFGTSVQVLNIGAIGLGSSGF-RVLQDGVTKE  400 (414)
Q Consensus       362 ~l~---~agvk~L~c~Lq~L~L~~c~lg~~gc-qaLa~aL~~N  400 (414)
                      .+.   .....  .-+|+.|+|.+|.+.-.+- ..+...++.+
T Consensus        91 ~l~~~~~~~~~--~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~  131 (347)
T 2ifg_A           91 ALESLSWKTVQ--GLSLQELVLSGNPLHCSCALRWLQRWEEEG  131 (347)
T ss_dssp             CCSCCCSTTTC--SCCCCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             ccceeCHHHcc--cCCceEEEeeCCCccCCCccHHHHHHHHhC
Confidence            222   11222  3349999999999986654 5555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.0025  Score=60.41  Aligned_cols=77  Identities=19%  Similarity=0.210  Sum_probs=47.8

Q ss_pred             CccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH----HHHhhccccCCCc-ee-EEEeecccCCchhHHH
Q 015056          319 SLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----HIAASLGKFFGTS-VQ-VLNIGAIGLGSSGFRV  392 (414)
Q Consensus       319 ~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs----~l~~agvk~L~c~-Lq-~L~L~~c~lg~~gcqa  392 (414)
                      +|++|+|++|.|+.    ...    .++....+   |+.++|.    .+++..  |-+|+ |+ +|+|.. .++.-+-  
T Consensus       227 ~L~~l~L~~n~i~~----I~~----~aF~~~~~---L~~l~l~~ni~~I~~~a--F~~~~~L~~~l~l~~-~l~~I~~--  290 (329)
T 3sb4_A          227 NLVSLDISKTNATT----IPD----FTFAQKKY---LLKIKLPHNLKTIGQRV--FSNCGRLAGTLELPA-SVTAIEF--  290 (329)
T ss_dssp             TCCEEECTTBCCCE----ECT----TTTTTCTT---CCEEECCTTCCEECTTT--TTTCTTCCEEEEECT-TCCEECT--
T ss_pred             CCeEEECCCCCcce----ecH----hhhhCCCC---CCEEECCcccceehHHH--hhCChhccEEEEEcc-cceEEch--
Confidence            89999999999886    222    24533333   7788774    222111  11555 88 888877 5555432  


Q ss_pred             HHHHHhcCCCCcEEecCCCCC
Q 015056          393 LQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       393 La~aL~~N~~L~~LdLs~N~i  413 (414)
                        .|.....+|++|+++.|.|
T Consensus       291 --~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          291 --GAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             --TTTTTCTTEEEEEECSSCC
T ss_pred             --hhhhCCccCCEEEeCCCcc
Confidence              2334557788888877776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.35  E-value=0.0055  Score=58.82  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=55.5

Q ss_pred             hHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056          212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  291 (414)
Q Consensus       212 ~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL  291 (414)
                      ....+......|.++|++|+|++|.++.                   +           .        .+...+....+|
T Consensus       157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~-------------------l-----------~--------~l~~~~~~l~~L  198 (267)
T 3rw6_A          157 CMAATLRIIEENIPELLSLNLSNNRLYR-------------------L-----------D--------DMSSIVQKAPNL  198 (267)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSCCCC-------------------C-----------G--------GGTTHHHHSTTC
T ss_pred             HHHHHHHHHHhhCCCCCEEECCCCCCCC-------------------C-----------c--------cchhHHhhCCCC
Confidence            3445555666777899999999996522                   1           1        233445677899


Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +.|+|++|++.+...   +..|...  .|++|+|++|.|++
T Consensus       199 ~~L~Ls~N~i~~~~~---l~~l~~l--~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          199 KILNLSGNELKSERE---LDKIKGL--KLEELWLDGNSLCD  234 (267)
T ss_dssp             CEEECTTSCCCSGGG---GGGGTTS--CCSEEECTTSTTGG
T ss_pred             CEEECCCCccCCchh---hhhcccC--CcceEEccCCcCcc
Confidence            999999999987622   2344433  89999999999985

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.25  E-value=0.0047  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=18.7

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .+|+.|+|++|.|+..--    .++..-++|++|+|++|.+
T Consensus        81 ~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           81 TQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCB
T ss_pred             chhhEEECCCCccceeCH----HHhccccCCCEEEeCCCCc
Confidence            455666666666553211    1233345566666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.15  E-value=0.004  Score=58.98  Aligned_cols=96  Identities=20%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             EEEccCC-CCCchhHHHHHHHhccCCCCccEEeccC-CCCCCcccccCCCChhhhhhcCcccCCcceeehH--H----HH
Q 015056          293 SLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H----IA  364 (414)
Q Consensus       293 ~L~Ls~N-~L~d~gaklL~~~Ll~~~C~L~~LdLs~-n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~----l~  364 (414)
                      .++++++ .|..      +-.|-... +|++|+|++ |.|++    ..-    .++..   +.+|++|+|+  .    ..
T Consensus        12 ~v~~~~~n~l~~------ip~l~~~~-~L~~L~l~~~n~l~~----~~~----~~~~~---l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A           12 GLRCTRDGALDS------LHHLPGAE-NLTELYIENQQHLQH----LEL----RDLRG---LGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CEECCSSCCCTT------TTTSCSCS-CCSEEECCSCSSCCE----ECG----GGSCS---CCCCSEEECCSSCCCEECT
T ss_pred             EEEcCCCCCCCc------cCCCCCCC-CeeEEEccCCCCCCC----cCh----hHhcc---ccCCCEEECCCCccceeCH
Confidence            4566776 6643      11222223 788888885 88886    111    23433   3348888884  1    12


Q ss_pred             hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       365 ~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++...  -.+|+.|+|++|.|+..--.     +-...+|+.|+|++|.+
T Consensus        74 ~~~~~--l~~L~~L~l~~N~l~~~~~~-----~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           74 DAFHF--TPRLSRLNLSFNALESLSWK-----TVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             TGGGS--CSCCCEEECCSSCCSCCCST-----TTCSCCCCEEECCSSCC
T ss_pred             HHhcC--CcCCCEEeCCCCccceeCHH-----HcccCCceEEEeeCCCc
Confidence            22333  46788888888888753211     12233488888888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.57  E-value=0.013  Score=56.23  Aligned_cols=86  Identities=24%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             cCCcccEEEccCCCCCch-hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHh
Q 015056          287 SGRSLCSLKLRHCHLDRD-FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA  365 (414)
Q Consensus       287 sn~sL~~L~Ls~N~L~d~-gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~  365 (414)
                      ...+|+.|+|++|++..- +...++.   ..+ +|++|+|++|.|++|      .    .+...+               
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~---~l~-~L~~L~Ls~N~i~~~------~----~l~~l~---------------  218 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQ---KAP-NLKILNLSGNELKSE------R----ELDKIK---------------  218 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHH---HST-TCCEEECTTSCCCSG------G----GGGGGT---------------
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHh---hCC-CCCEEECCCCccCCc------h----hhhhcc---------------
Confidence            346777777777777551 1111111   233 677777777777762      1    111111               


Q ss_pred             hccccCCCceeEEEeecccCCc---hhHHHHHHHHhcCCCCcEEe
Q 015056          366 SLGKFFGTSVQVLNIGAIGLGS---SGFRVLQDGVTKELKLVNIN  407 (414)
Q Consensus       366 agvk~L~c~Lq~L~L~~c~lg~---~gcqaLa~aL~~N~~L~~Ld  407 (414)
                            +-+|++|+|++|.+..   ..-.....++..=++|+.||
T Consensus       219 ------~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          219 ------GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ------TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ------cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence                  1257778888888764   12345556777778888887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=91.70  E-value=0.073  Score=50.88  Aligned_cols=104  Identities=15%  Similarity=0.052  Sum_probs=61.7

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcce-eehH-----H
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL-LNLS-----H  362 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~-LnLs-----~  362 (414)
                      ++++.|+|++|++..=..    .++.+.+ +|++|+|++|.|.+.+.   -    .++....   +|.+ ++++     .
T Consensus        30 ~~l~~L~Ls~N~i~~i~~----~~f~~l~-~L~~L~Ls~N~i~~~i~---~----~~f~~L~---~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQK----GAFSGFG-DLEKIEISQNDVLEVIE---A----DVFSNLP---KLHEIRIEKANNLLY   94 (350)
T ss_dssp             TTCSEEEEESCCCSEECT----TSSTTCT-TCCEEEEECCTTCCEEC---T----TSBCSCT---TCCEEEEEEETTCCE
T ss_pred             CCCCEEEccCCcCCCcCH----HHHcCCC-CCCEEECcCCCCCCccC---h----hHhhcch---hhhhhhcccCCcccc
Confidence            679999999999963221    1244555 89999999999876221   1    1221111   1322 2221     1


Q ss_pred             H-HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCC-CCC
Q 015056          363 I-AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF-KPI  413 (414)
Q Consensus       363 l-~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~-N~i  413 (414)
                      + .++...  -.+|+.|++++|+++....    .......++..|++.. |+|
T Consensus        95 l~~~~f~~--l~~L~~L~l~~n~l~~~~~----~~~~~~~~l~~l~l~~~~~i  141 (350)
T 4ay9_X           95 INPEAFQN--LPNLQYLLISNTGIKHLPD----VHKIHSLQKVLLDIQDNINI  141 (350)
T ss_dssp             ECTTSBCC--CTTCCEEEEEEECCSSCCC----CTTCCBSSCEEEEEESCTTC
T ss_pred             cCchhhhh--ccccccccccccccccCCc----hhhcccchhhhhhhcccccc
Confidence            1 122333  4789999999999976432    1123456678888854 444

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=88.92  E-value=0.32  Score=47.72  Aligned_cols=71  Identities=21%  Similarity=0.313  Sum_probs=44.1

Q ss_pred             CcccCCChhhHHHHHhcCCchhhh-hhhcc-CCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCC--CcCC
Q 015056           27 PYVYELPADLFDILLTCLPPLALQ-KLQTK-MPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTDQ  101 (414)
Q Consensus        27 P~~~~Lp~~~~~~v~~~Lpp~aL~-~l~~~-~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~--~~~~  101 (414)
                      +.+.+||.|++..|+.+|||..|- .+... -..+   .+ .|+                 +.|++.|..+|-.  ....
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr---~l~~~~-----------------~~w~~~~~~~g~~~~~~~~  108 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWK---ELVDGA-----------------PLWLLKCQQEGLVPEGSAD  108 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHH---HHHTSH-----------------HHHHHHHHHTTCCCC----
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHH---HHhcCh-----------------HHHHHHhhccCcccccccC
Confidence            457999999999999999998553 22211 0000   01 222                 3899999888433  2222


Q ss_pred             CCCCchHHHHHHHHHH
Q 015056          102 IEPVDWQQRYWEAHVQ  117 (414)
Q Consensus       102 ~~~~~Wkq~y~E~hlq  117 (414)
                      ....+||++|..++..
T Consensus       109 ~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A          109 EERDHWQQFYFLSKRR  124 (297)
T ss_dssp             -CCSCHHHHHHHHHHC
T ss_pred             CCCCChhhhheheecc
Confidence            1268899999988544

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=84.10  E-value=0.38  Score=40.23  Aligned_cols=60  Identities=17%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             CChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCchHHHHHHHhccCCCCcCCCCCCchHHH
Q 015056           32 LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQR  110 (414)
Q Consensus        32 Lp~~~~~~v~~~Lpp~aL~~l~~~~p~~~~~~~-~~~~~~~~~~~kr~r~~~~~~~Wkrl~~~RW~~~~~~~~~~~Wkq~  110 (414)
                      .|=+++.-|+++-+|+-|..++..-|.     + ++-|.                -|++.|+.--|..... ++.+|++|
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~-----L~~dTde----------------LWk~~c~rdF~~~~p~-e~esWRel   70 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHV-----LIEETDQ----------------LWKVHCHRDFKEERPE-EYESWREM   70 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC-----------CCHH----------------HHHHHC----CCSCCC-SSSCHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCcc-----cchhhHH----------------HHHHHHHhHCcccCCC-CCCCHHHH
Confidence            455666677777788877777776663     4 34343                8999999999983322 27899999


Q ss_pred             HHH
Q 015056          111 YWE  113 (414)
Q Consensus       111 y~E  113 (414)
                      |..
T Consensus        71 Y~r   73 (97)
T 4hfx_A           71 YLR   73 (97)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            984

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=82.63  E-value=1.8  Score=40.63  Aligned_cols=105  Identities=11%  Similarity=0.039  Sum_probs=67.4

Q ss_pred             HHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcc-ee
Q 015056          280 ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR-LL  358 (414)
Q Consensus       280 ~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~-~L  358 (414)
                      ++..+...+.+|+.|+|++|.+..=+...    ..+-+ +|++|+|.+| |+.    ...    .|+....+   |+ .+
T Consensus       217 ~~~~l~~~~~~L~~l~L~~n~i~~I~~~a----F~~~~-~L~~l~l~~n-i~~----I~~----~aF~~~~~---L~~~l  279 (329)
T 3sb4_A          217 DFKLIRDYMPNLVSLDISKTNATTIPDFT----FAQKK-YLLKIKLPHN-LKT----IGQ----RVFSNCGR---LAGTL  279 (329)
T ss_dssp             HHHHHHHHCTTCCEEECTTBCCCEECTTT----TTTCT-TCCEEECCTT-CCE----ECT----TTTTTCTT---CCEEE
T ss_pred             HHHHHHHhcCCCeEEECCCCCcceecHhh----hhCCC-CCCEEECCcc-cce----ehH----HHhhCChh---ccEEE
Confidence            33444445899999999999875433322    22223 8999999998 664    212    35544444   88 88


Q ss_pred             ehH----HHH-hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEe
Q 015056          359 NLS----HIA-ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNIN  407 (414)
Q Consensus       359 nLs----~l~-~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~Ld  407 (414)
                      +|.    .++ .|...  ..+|++|++..|.++.-+..+    ....++|++|+
T Consensus       280 ~l~~~l~~I~~~aF~~--c~~L~~l~l~~n~i~~I~~~a----F~~~~~L~~ly  327 (329)
T 3sb4_A          280 ELPASVTAIEFGAFMG--CDNLRYVLATGDKITTLGDEL----FGNGVPSKLIY  327 (329)
T ss_dssp             EECTTCCEECTTTTTT--CTTEEEEEECSSCCCEECTTT----TCTTCCCCEEE
T ss_pred             EEcccceEEchhhhhC--CccCCEEEeCCCccCccchhh----hcCCcchhhhc
Confidence            884    222 22222  458999999999988876443    44566788775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 23/182 (12%), Positives = 43/182 (23%), Gaps = 4/182 (2%)

Query: 151 YEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFE 210
           +E  +    C         ++          +                   L   W++  
Sbjct: 263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322

Query: 211 EHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI 270
               A C            L  L    +     G+        +    +  L +      
Sbjct: 323 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382

Query: 271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330
           ++  SS    L + L +  SL  L L +  L       +  S+ +    L  L L     
Sbjct: 383 DSSCSS----LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

Query: 331 GG 332
             
Sbjct: 439 SE 440

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.41
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.21
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.11
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.08
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.02
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.97
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.75
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.55
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.48
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.47
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.42
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	90.76

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.77  E-value=3.2e-18  Score=161.73  Aligned_cols=205  Identities=19%  Similarity=0.194  Sum_probs=164.6

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCc-----cccccccceeeccccccc
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK-----RKRIHKIENLSIDISSFI  270 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p-----~v~~C~lq~lsl~tc~~~  270 (414)
                      .+|+.|.|+.. .++.++..+...+..+. +|++|++++|.+++.++..++.++..-     ......++.+.+....+ 
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i-  170 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-  170 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-
T ss_pred             CCcccccccccccccccccchhhhhcccc-cchheecccccccccccccccccccccccccccccCcccceeecccccc-
Confidence            47999999887 78888889999998886 999999999999999988888876431     01123466777776665 


Q ss_pred             cCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHH-HHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcC
Q 015056          271 ENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRM-VFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG  349 (414)
Q Consensus       271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gakl-L~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~n  349 (414)
                      +   ......++.++..+.+|+.|+|++|.+.++|+.. +..++...+ +|++|+|++|.|++    ..+..++.++..+
T Consensus       171 ~---~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~----~g~~~L~~~l~~~  242 (344)
T d2ca6a1         171 E---NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTH----LGSSALAIALKSW  242 (344)
T ss_dssp             T---GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHH----HHHHHHHHHGGGC
T ss_pred             c---ccccccccchhhhhhhhcccccccccccccccccchhhhhcchh-hhcccccccccccc----ccccccccccccc
Confidence            4   5666789999999999999999999999999876 455566666 89999999999997    4455566777776


Q ss_pred             cccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhc-CCCCcEEecCCCCCC
Q 015056          350 KSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINIRFKPIS  414 (414)
Q Consensus       350 ks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~-N~~L~~LdLs~N~i~  414 (414)
                      .+   |++|+|+          .+++++.+.-+.+|++|+|++|.++++|+.+|+++|.. .++|+.|+|++|+++
T Consensus       243 ~~---L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         243 PN---LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TT---CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cc---chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            66   9999993          45555544336789999999999999999999999985 578999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.1e-18  Score=160.46  Aligned_cols=204  Identities=19%  Similarity=0.204  Sum_probs=168.7

Q ss_pred             cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056          196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  274 (414)
Q Consensus       196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~  274 (414)
                      .+..+.+.+..+ ....++......+..+. +++++++.+|.+.+.++...........   ..++.+.+..+.+ .   
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~~n~~~~~~~~~~~~~~~~~~---~~l~~l~l~~n~i-~---  268 (460)
T d1z7xw1         197 PCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPS---SRLRTLWIWECGI-T---  268 (460)
T ss_dssp             CCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-C---
T ss_pred             cccccccccccccccchhhhcccccccccc-cccccchhhccccccccchhhccccccc---ccccccccccccc-c---
Confidence            456666666666 56666778888888886 9999999999999999888888777766   6788999998887 5   


Q ss_pred             cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      ......++..+..+..++.+++++|.+.|+|++.++.++....+.|+.+++++|.+++    .....++.++..+.+   
T Consensus       269 ~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~----~~~~~l~~~~~~~~~---  341 (460)
T d1z7xw1         269 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA----ACCSHFSSVLAQNRF---  341 (460)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG----GGHHHHHHHHHHCSS---
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhh----hhhhhcccccccccc---
Confidence            5666778889999999999999999999999999999999988899999999999998    334445566666665   


Q ss_pred             cceeehH--HHHhhcccc----C---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          355 LRLLNLS--HIAASLGKF----F---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       355 L~~LnLs--~l~~agvk~----L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|||+  .+.+.|+..    +   ++.|++|+|++|.+|+.|+.+|+++|..|++|++|||++|+|+
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            9999995  343332221    1   5679999999999999999999999999999999999999985

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.1e-18  Score=160.42  Aligned_cols=196  Identities=22%  Similarity=0.196  Sum_probs=153.7

Q ss_pred             cccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCC
Q 015056          196 ESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP  274 (414)
Q Consensus       196 ~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~  274 (414)
                      ...++.+.++.+ .........+..+..+. +++.+++++|.++++++..+++.+....   +.++.+.+..+.+ +   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~-~l~~l~l~~n~i~~~~~~~l~~~l~~~~---~~L~~l~l~~~~l-~---  325 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLAGNELGDEGARLLCETLLEPG---CQLESLWVKSCSF-T---  325 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECTTCCCHHHHHHHHHHHHTSTT---CCCCEEECTTSCC-B---
T ss_pred             cccccccccccccccccccccccccccccc-cccccccccccccccccchhhccccccc---cccccccccccch-h---
Confidence            346777888777 66677778888888886 9999999999999999999999998877   7899999998887 6   


Q ss_pred             cccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCC
Q 015056          275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS  354 (414)
Q Consensus       275 ~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~  354 (414)
                      ......|+.++..+.+|++|+|++|+++|+|+..++.+|.++.+.|++|+|++|.|++    .....++.+|..+++   
T Consensus       326 ~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~----~~~~~l~~~l~~~~~---  398 (460)
T d1z7xw1         326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD----SSCSSLAATLLANHS---  398 (460)
T ss_dssp             GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH----HHHHHHHHHHHHCCC---
T ss_pred             hhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh----HHHHHHHHHHhcCCC---
Confidence            5777889999999999999999999999999999999998877799999999999998    334445556655555   


Q ss_pred             cceeehH--HHHhhccc----cC---CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEE
Q 015056          355 LRLLNLS--HIAASLGK----FF---GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNI  406 (414)
Q Consensus       355 L~~LnLs--~l~~agvk----~L---~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~L  406 (414)
                      |++|||+  .+.+.|+.    .+   .+.|+.|++.+|.+..++.+.|..+.+.|++|+.|
T Consensus       399 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            7777773  22222221    11   44567777777777777777777766677666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.73  E-value=2.8e-17  Score=155.17  Aligned_cols=200  Identities=16%  Similarity=0.205  Sum_probs=158.0

Q ss_pred             cccccceeeeec-------cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccc
Q 015056          196 ESKLQSLVLRWI-------RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS  268 (414)
Q Consensus       196 ~ckLq~L~L~~~-------~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~  268 (414)
                      .-.++.|.++.+       ........++.++..++ +|++|+|++|.++..++..+.+.+...    ..+++|.+..+.
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~----~~L~~L~l~~n~  132 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKH----TPLEHLYLHNNG  132 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHC----TTCCEEECCSSC
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCC-Ccccccccccccccccccchhhhhccc----ccchheeccccc
Confidence            346777777654       12455677888888886 999999999999999999999988653    358999999888


Q ss_pred             cccCCCcccHHHHHHHH---------hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCC
Q 015056          269 FIENCPSSVVVELVSFL---------SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDR  339 (414)
Q Consensus       269 ~~~~~~~~~~~~Las~L---------ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c  339 (414)
                      + +   ......++.++         ...++|+.|++++|.+.++++..+..++...+ .|++|+|+.|.|++    ...
T Consensus       133 l-~---~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~----~g~  203 (344)
T d2ca6a1         133 L-G---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRP----EGI  203 (344)
T ss_dssp             C-H---HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCH----HHH
T ss_pred             c-c---ccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh-hhcccccccccccc----ccc
Confidence            7 5   45556666666         35689999999999999999999999999888 89999999999997    111


Q ss_pred             C-ChhhhhhcCcccCCcceeehH----------HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhc--CCCCcEE
Q 015056          340 S-GPLFSLGAGKSLQSLRLLNLS----------HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTK--ELKLVNI  406 (414)
Q Consensus       340 ~-~ls~aL~~nks~~~L~~LnLs----------~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~--N~~L~~L  406 (414)
                      . .++.++..+++   |++|+|+          .++.++..  ..+|++|+|++|.+|+.|+..++++|..  |.+|++|
T Consensus       204 ~~~l~~~l~~~~~---L~~L~Ls~N~i~~~g~~~L~~~l~~--~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L  278 (344)
T d2ca6a1         204 EHLLLEGLAYCQE---LKVLDLQDNTFTHLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL  278 (344)
T ss_dssp             HHHHHTTGGGCTT---CCEEECCSSCCHHHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred             ccchhhhhcchhh---hcccccccccccccccccccccccc--cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEE
Confidence            1 12345555554   9999994          23333444  7889999999999999999999999974  6889999


Q ss_pred             ecCCCCCC
Q 015056          407 NIRFKPIS  414 (414)
Q Consensus       407 dLs~N~i~  414 (414)
                      ||++|.|+
T Consensus       279 ~ls~N~i~  286 (344)
T d2ca6a1         279 RLQYNEIE  286 (344)
T ss_dssp             ECCSSCCB
T ss_pred             ECCCCcCC
Confidence            99999984

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=6.3e-15  Score=127.19  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             CcccHHHHHHHHhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCccc
Q 015056          274 PSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSL  352 (414)
Q Consensus       274 ~~~~~~~Las~Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~  352 (414)
                      |+.+.+.+..+...+++|++|+|++ +.+++++++.++.+|...+ .|++|+|++|.|++    .....++.+|..+++ 
T Consensus         2 ~~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~----~~~~~L~~~l~~~~~-   75 (166)
T d1io0a_           2 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSND----PVAFALAEMLKVNNT-   75 (166)
T ss_dssp             CCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCH----HHHHHHHHHHHHCSS-
T ss_pred             CccHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccH----HHHHHHHHHHhhccc-
Confidence            4455555666666666666666666 4566666666666666665 66666666666666    333444555555544 


Q ss_pred             CCcceeeh----------HHHHhhccccCCCceeEEEe--ecccCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          353 QSLRLLNL----------SHIAASLGKFFGTSVQVLNI--GAIGLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       353 ~~L~~LnL----------s~l~~agvk~L~c~Lq~L~L--~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                        |+.+++          ..+++++.+  +.+|+.++|  ..|.+|+.|+++||.+|++|++|++|+++.|+
T Consensus        76 --l~~l~l~~~~~~~~g~~~l~~~l~~--~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          76 --LKSLNVESNFISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             --CCEEECCSSCCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             --chhhhhccccccchhHHHHHHHHHh--CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              666666          256666666  888877555  56789999999999999999999999998875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.55  E-value=1.2e-14  Score=126.54  Aligned_cols=123  Identities=14%  Similarity=0.186  Sum_probs=88.8

Q ss_pred             HHHHHHhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCccee
Q 015056          280 ELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL  358 (414)
Q Consensus       280 ~Las~Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~L  358 (414)
                      .+......+.+|++|+|++ +.+++++++.++.+|.+.+ .|++|+|++|.|++    ..+..++.+|..+++   |++|
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~----~~~~~la~~L~~n~~---L~~L   77 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISD----SEARGLIELIETSPS---LRVL   77 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBH----HHHTTHHHHHHHCSS---CCEE
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCC-ccceeeccccccch----hHHHHHhhhhhhccc---ccce
Confidence            4555555556777777766 3577777777777776665 67777777777766    445555566666555   7777


Q ss_pred             ehH----------HHHhhccccCCCceeEEEeecc---cCCchhHHHHHHHHhcCCCCcEEecCCCC
Q 015056          359 NLS----------HIAASLGKFFGTSVQVLNIGAI---GLGSSGFRVLQDGVTKELKLVNINIRFKP  412 (414)
Q Consensus       359 nLs----------~l~~agvk~L~c~Lq~L~L~~c---~lg~~gcqaLa~aL~~N~~L~~LdLs~N~  412 (414)
                      +|+          .++.++.+  +.+|++|+|.+|   .+|+.|+++|+.+|..|++|++|+++++.
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~--n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLV--TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTT--TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             eeehhhcchHHHHHHHHHHHh--CCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            772          55666666  888999999876   57889999999999999999999998875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.51  E-value=2.1e-14  Score=125.01  Aligned_cols=157  Identities=13%  Similarity=0.203  Sum_probs=126.4

Q ss_pred             HHHHHHHHhhCCCCCcEEEccc-CCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcc
Q 015056          213 VQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL  291 (414)
Q Consensus       213 ~~~L~~~L~~n~~tLt~L~L~~-~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL  291 (414)
                      +++....+..|.++|++|+|++ +.++++++..++++|..-.    .++.|.+..|.+ .   .+....|+.+|+.+++|
T Consensus         3 v~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~----~L~~L~Ls~n~l-~---~~~~~~la~~L~~n~~L   74 (167)
T d1pgva_           3 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK----HIEKFSLANTAI-S---DSEARGLIELIETSPSL   74 (167)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS----CCCEEECTTSCC-B---HHHHTTHHHHHHHCSSC
T ss_pred             HHHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCC----ccceeecccccc-c---hhHHHHHhhhhhhcccc
Confidence            4566777778867999999998 4699999999999997643    489999998887 6   67788999999999999


Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhccccC
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFF  371 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk~L  371 (414)
                      ++|+|++|.++++|+..|+.+|.+.. +|++|+|++|.+..    .... .                 ..++++++.+  
T Consensus        75 ~~L~L~~n~i~~~g~~~l~~aL~~n~-sL~~L~l~~n~~~~----~g~~-~-----------------~~~l~~~L~~--  129 (167)
T d1pgva_          75 RVLNVESNFLTPELLARLLRSTLVTQ-SIVEFKADNQRQSV----LGNQ-V-----------------EMDMMMAIEE--  129 (167)
T ss_dssp             CEEECCSSBCCHHHHHHHHHHTTTTC-CCSEEECCCCSSCC----CCHH-H-----------------HHHHHHHHHH--
T ss_pred             cceeeehhhcchHHHHHHHHHHHhCC-cCCEEECCCCcCCC----ccHH-H-----------------HHHHHHHHHh--
Confidence            99999999999999999999999988 99999999997765    1111 0                 0156666667  


Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCc
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV  404 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~  404 (414)
                      +.+|++|+++.+..+  +-..++++|..|..+.
T Consensus       130 n~sL~~l~l~~~~~~--~~~~i~~~l~~N~~~~  160 (167)
T d1pgva_         130 NESLLRVGISFASME--ARHRVSEALERNYERV  160 (167)
T ss_dssp             CSSCCEEECCCCCHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCccEeeCcCCCch--HHHHHHHHHHHhhHHH
Confidence            888888888766433  3367899999887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=1.7e-13  Score=117.99  Aligned_cols=156  Identities=17%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             HhHHHHHHHHhhCCCCCcEEEccc-CCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCC
Q 015056          211 EHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGR  289 (414)
Q Consensus       211 ~~~~~L~~~L~~n~~tLt~L~L~~-~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~  289 (414)
                      ..++++...+..|-++|++|+|++ +.+++.++..+|.++..-    ..+++|.+..+.+ +   .+....|+.+|+.++
T Consensus         3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n----~~L~~L~Ls~n~l-~---~~~~~~L~~~l~~~~   74 (166)
T d1io0a_           3 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN----TYVKKFSIVGTRS-N---DPVAFALAEMLKVNN   74 (166)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC----CSCCEEECTTSCC-C---HHHHHHHHHHHHHCS
T ss_pred             ccHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC----CccCeeeccCCcc-c---HHHHHHHHHHHhhcc
Confidence            346777787887867999999998 569999999999998632    3488999998887 6   678888999999999


Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEe--ccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhc
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILD--LSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL  367 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~Ld--Ls~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~ag  367 (414)
                      +|+.|++++|.++++|++.++.+|...+ +|++++  +++|.+++    ..+.                     ++++++
T Consensus        75 ~l~~l~l~~~~~~~~g~~~l~~~l~~~~-~L~~l~L~l~~n~i~~----~~~~---------------------~La~~L  128 (166)
T d1io0a_          75 TLKSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQSQPLGN----NVEM---------------------EIANML  128 (166)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCCSSCCCH----HHHH---------------------HHHHHH
T ss_pred             cchhhhhccccccchhHHHHHHHHHhCc-cccEEeeccCCCcCcH----HHHH---------------------HHHHHH
Confidence            9999999999999999999999999888 888754  46777887    2233                     344444


Q ss_pred             cccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCc
Q 015056          368 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV  404 (414)
Q Consensus       368 vk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~  404 (414)
                      .+  +.+|++|+|..+..++.  ..++.+|+.|.+|+
T Consensus       129 ~~--n~~L~~L~l~~~~~~~~--~~i~~aL~~N~~l~  161 (166)
T d1io0a_         129 EK--NTTLLKFGYHFTQQGPR--LRASNAMMNNNDLV  161 (166)
T ss_dssp             HH--CSSCCEEECCCSSHHHH--HHHHHHHHHHHHHH
T ss_pred             Hh--CCCcCEEeCcCCCCcHH--HHHHHHHHHHHHHH
Confidence            45  66666777655543322  46888888887654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.2e-11  Score=114.82  Aligned_cols=175  Identities=17%  Similarity=0.168  Sum_probs=110.1

Q ss_pred             hhchhccc-cccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEccc-CCCChhHHHHHHhhhcCccccccccceeeccc
Q 015056          190 TCQLLRES-KLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDI  266 (414)
Q Consensus       190 ~~~l~~~c-kLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~-~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~t  266 (414)
                      ...+++.| +|++|.|+.+ .++..    ...+.+++ +|++|+|++ +.+++.++..+.+.+  |     ++|++.+..
T Consensus        63 l~~l~~~c~~L~~L~L~~~~l~~~~----~~~l~~~~-~L~~L~Ls~c~~itd~~l~~l~~~~--~-----~L~~L~ls~  130 (284)
T d2astb2          63 LHGILSQCSKLQNLSLEGLRLSDPI----VNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSC--S-----RLDELNLSW  130 (284)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHH----HHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHC--T-----TCCEEECCC
T ss_pred             HHHHHHhCCCcccccccccCCCcHH----HHHHhcCC-CCcCccccccccccccccchhhHHH--H-----hcccccccc
Confidence            34556666 7888877777 33332    33444554 888888888 467777777766554  2     377888876


Q ss_pred             cccccCCCcccHHHHHHHHhc-CCcccEEEccC--CCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCCh
Q 015056          267 SSFIENCPSSVVVELVSFLSS-GRSLCSLKLRH--CHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGP  342 (414)
Q Consensus       267 c~~~~~~~~~~~~~Las~Lss-n~sL~~L~Ls~--N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~l  342 (414)
                      |...+      ...+..++.. +++|++|++++  +.+.|+++..+...+   + +|++|+|++| .|++      .. +
T Consensus       131 c~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~---~-~L~~L~L~~~~~itd------~~-~  193 (284)
T d2astb2         131 CFDFT------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---P-NLVHLDLSDSVMLKN------DC-F  193 (284)
T ss_dssp             CTTCC------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC---T-TCSEEECTTCTTCCG------GG-G
T ss_pred             ccccc------cccchhhhcccccccchhhhccccccccccccccccccc---c-cccccccccccCCCc------hh-h
Confidence            65423      1233333333 46788888886  367788877766543   3 6888888886 4665      11 1


Q ss_pred             hhhhhcCcccCCcceeehH---HHHhhccccC--CCceeEEEeecccCCchhHHHHHHHHh
Q 015056          343 LFSLGAGKSLQSLRLLNLS---HIAASLGKFF--GTSVQVLNIGAIGLGSSGFRVLQDGVT  398 (414)
Q Consensus       343 s~aL~~nks~~~L~~LnLs---~l~~agvk~L--~c~Lq~L~L~~c~lg~~gcqaLa~aL~  398 (414)
                       .++...   ++|++|+|+   .+-+++...+  ..+|+.|++++| +++.|.+.+++.++
T Consensus       194 -~~l~~~---~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp  249 (284)
T d2astb2         194 -QEFFQL---NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALP  249 (284)
T ss_dssp             -GGGGGC---TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHST
T ss_pred             -hhhccc---CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCc
Confidence             344433   348888884   3333333323  567888888888 78888888887653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-10  Score=106.82  Aligned_cols=185  Identities=16%  Similarity=0.143  Sum_probs=133.1

Q ss_pred             chhccccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccc
Q 015056          192 QLLRESKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI  270 (414)
Q Consensus       192 ~l~~~ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~  270 (414)
                      +.+...+||+|.|+++ .++...    ..+.++.++|++|+|.++.+.+.++..+..        ..+++++.+..|...
T Consensus        41 ~~~~~~~L~~LdLs~~~i~~~~l----~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~--------~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          41 EHFSPFRVQHMDLSNSVIEVSTL----HGILSQCSKLQNLSLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGF  108 (284)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHH----HHHHTTBCCCSEEECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSC
T ss_pred             hhccCCCCCEEECCCCccCHHHH----HHHHHhCCCcccccccccCCCcHHHHHHhc--------CCCCcCccccccccc
Confidence            3344568999999877 444433    334667779999999999999888876642        245999999987653


Q ss_pred             cCCCcccHHHHHHHHhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCC--CCCCcccccCCCChhhhhh
Q 015056          271 ENCPSSVVVELVSFLSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGN--SIGGWLSKYDRSGPLFSLG  347 (414)
Q Consensus       271 ~~~~~~~~~~Las~Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n--~Lt~wl~~~~c~~ls~aL~  347 (414)
                      +      ...+..+...+++|++|+|++ +.+.|+++..++..+  .+ .|++|+|++|  .+++      .+ + .++.
T Consensus       109 t------d~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~--~~-~L~~L~l~~~~~~i~~------~~-l-~~l~  171 (284)
T d2astb2         109 S------EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV--SE-TITQLNLSGYRKNLQK------SD-L-STLV  171 (284)
T ss_dssp             C------HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS--CT-TCCEEECCSCGGGSCH------HH-H-HHHH
T ss_pred             c------ccccchhhHHHHhccccccccccccccccchhhhccc--cc-ccchhhhccccccccc------cc-c-cccc
Confidence            4      235666677889999999999 578898887766543  23 7999999986  3554      11 2 2332


Q ss_pred             cCcccCCcceeehH---HHHhhccccC--CCceeEEEeecc-cCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056          348 AGKSLQSLRLLNLS---HIAASLGKFF--GTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       348 ~nks~~~L~~LnLs---~l~~agvk~L--~c~Lq~L~L~~c-~lg~~gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                      .  +..+|++|+|+   .+.+++...+  -.+|++|+|++| .+++.|..+|+    ..++|++|+++++
T Consensus       172 ~--~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~----~~~~L~~L~l~~~  235 (284)
T d2astb2         172 R--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG----EIPTLKTLQVFGI  235 (284)
T ss_dssp             H--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG----GCTTCCEEECTTS
T ss_pred             c--ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHh----cCCCCCEEeeeCC
Confidence            2  23459999995   3444444434  468999999996 79999877654    4689999999886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=4.2e-07  Score=79.11  Aligned_cols=84  Identities=19%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      ++.++|++|+|++|.+....  .    +..-    -.++++.+..+.+ .    ..+     .+...++|+.|++++|..
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~----l~~l----~~L~~L~l~~n~~-~----~~~-----~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--P----LKNL----TKLVDILMNNNQI-A----DIT-----PLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G----GTTC----TTCCEEECCSSCC-C----CCG-----GGTTCTTCSEEECCSSCC
T ss_pred             ccCCCcCcCccccccccCcc--c----ccCC----ccccccccccccc-c----ccc-----cccccccccccccccccc
Confidence            34567777777777664311  0    1110    1255555555444 2    111     245556666666666665


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ....      .+.+.+ .|+.|++++|.|+.
T Consensus       119 ~~~~------~~~~l~-~L~~L~l~~n~l~~  142 (199)
T d2omxa2         119 TDID------PLKNLT-NLNRLELSSNTISD  142 (199)
T ss_dssp             CCCG------GGTTCT-TCSEEECCSSCCCC
T ss_pred             cccc------ccchhh-hhHHhhhhhhhhcc
Confidence            4422      233333 56666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.5e-07  Score=82.78  Aligned_cols=150  Identities=17%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             hCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCC
Q 015056          222 QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL  301 (414)
Q Consensus       222 ~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L  301 (414)
                      .+.++|++|+|++|.++.-..      .    ..--.+++|.+....+ +.        +...+....+|+.|+|++|++
T Consensus        52 ~~l~~L~~L~L~~N~l~~l~~------~----~~l~~L~~L~Ls~N~l-~~--------~~~~~~~l~~L~~L~l~~~~~  112 (266)
T d1p9ag_          52 MPYTRLTQLNLDRAELTKLQV------D----GTLPVLGTLDLSHNQL-QS--------LPLLGQTLPALTVLDVSFNRL  112 (266)
T ss_dssp             TTCTTCCEEECTTSCCCEEEC------C----SCCTTCCEEECCSSCC-SS--------CCCCTTTCTTCCEEECCSSCC
T ss_pred             hcccccccccccccccccccc------c----cccccccccccccccc-cc--------ccccccccccccccccccccc
Confidence            455678888888887653110      0    0112355666665554 31        111234456677777777766


Q ss_pred             CchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH----hhccccCCCce
Q 015056          302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA----ASLGKFFGTSV  375 (414)
Q Consensus       302 ~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~----~agvk~L~c~L  375 (414)
                      ..-..    ....... .+++|++++|.|+.    ..-    ..+.   .+.+|+.|+++  .+.    ++...  -.+|
T Consensus       113 ~~~~~----~~~~~l~-~l~~L~l~~n~l~~----l~~----~~~~---~l~~l~~l~l~~N~l~~~~~~~~~~--l~~L  174 (266)
T d1p9ag_         113 TSLPL----GALRGLG-ELQELYLKGNELKT----LPP----GLLT---PTPKLEKLSLANNNLTELPAGLLNG--LENL  174 (266)
T ss_dssp             CCCCS----STTTTCT-TCCEEECTTSCCCC----CCT----TTTT---TCTTCCEEECTTSCCSCCCTTTTTT--CTTC
T ss_pred             ceeec----ccccccc-ccccccccccccce----ecc----cccc---ccccchhcccccccccccCcccccc--cccc
Confidence            43211    1111222 66777777777765    111    1221   23347777774  221    12223  4789


Q ss_pred             eEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          376 QVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       376 q~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|+|++|+|+.-     -..+..+.+|+.|+|++|.+
T Consensus       175 ~~L~Ls~N~L~~l-----p~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         175 DTLLLQENSLYTI-----PKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CEEECCSSCCCCC-----CTTTTTTCCCSEEECCSCCB
T ss_pred             ceeecccCCCccc-----ChhHCCCCCCCEEEecCCCC
Confidence            9999999999863     22334578899999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=1.3e-06  Score=76.57  Aligned_cols=142  Identities=23%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      +++.++|++|+|++|++..-.  .    +..    --+++.+.+..+.+ +        ++. .+....+|+.|++++|+
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~--~----~~~----l~~L~~L~l~~n~i-~--------~l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIK--P----LAN----LKNLGWLFLDENKV-K--------DLS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G----GTT----CTTCCEEECCSSCC-C--------CGG-GGTTCTTCCEEECTTSC
T ss_pred             HhhCCCCCEEeCCCccccCcc--c----ccc----Cccccccccccccc-c--------ccc-ccccccccccccccccc
Confidence            355678999999999876421  1    111    12477788887776 4        232 36677899999999998


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCcee
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQ  376 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq  376 (414)
                      +.+-      ..+.+.+ .++.+++++|.+++      -.    ....   +.+|++++++  .+.+  .+.+  -.+|+
T Consensus       124 ~~~~------~~l~~l~-~l~~l~~~~n~l~~------~~----~~~~---l~~L~~l~l~~n~l~~i~~l~~--l~~L~  181 (210)
T d1h6ta2         124 ISDI------NGLVHLP-QLESLYLGNNKITD------IT----VLSR---LTKLDTLSLEDNQISDIVPLAG--LTKLQ  181 (210)
T ss_dssp             CCCC------GGGGGCT-TCCEEECCSSCCCC------CG----GGGG---CTTCSEEECCSSCCCCCGGGTT--CTTCC
T ss_pred             cccc------ccccccc-cccccccccccccc------cc----cccc---cccccccccccccccccccccC--CCCCC
Confidence            8652      3566666 89999999999987      11    1212   2348888884  2211  1233  46899


Q ss_pred             EEEeecccCCchhHHHHHHHHhcCCCCcEEecCC
Q 015056          377 VLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRF  410 (414)
Q Consensus       377 ~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~  410 (414)
                      +|+|++|.+++-      ..+..-++|++|+|++
T Consensus       182 ~L~Ls~N~i~~l------~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         182 NLYLSKNHISDL------RALAGLKNLDVLELFS  209 (210)
T ss_dssp             EEECCSSCCCBC------GGGTTCTTCSEEEEEE
T ss_pred             EEECCCCCCCCC------hhhcCCCCCCEEEccC
Confidence            999999999873      2366678999999975

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.5e-07  Score=81.42  Aligned_cols=98  Identities=15%  Similarity=0.024  Sum_probs=46.9

Q ss_pred             hcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH----
Q 015056          286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS----  361 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs----  361 (414)
                      ....+++.|++++|.+..-...    .....+ .++.|++++|+|++    ..-    .++..   +.+|++|||+    
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~----~~~~l~-~l~~l~l~~N~l~~----~~~----~~~~~---l~~L~~L~Ls~N~L  184 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPG----LLTPTP-KLEKLSLANNNLTE----LPA----GLLNG---LENLDTLLLQENSL  184 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTT----TTTTCT-TCCEEECTTSCCSC----CCT----TTTTT---CTTCCEEECCSSCC
T ss_pred             ccccccccccccccccceeccc----cccccc-cchhcccccccccc----cCc----ccccc---ccccceeecccCCC
Confidence            3455666777777666432111    111222 56667777777665    111    12322   2236666663    


Q ss_pred             -HHHhhccccCCCceeEEEeecccCCchhH-HHHHHHHhcCC
Q 015056          362 -HIAASLGKFFGTSVQVLNIGAIGLGSSGF-RVLQDGVTKEL  401 (414)
Q Consensus       362 -~l~~agvk~L~c~Lq~L~L~~c~lg~~gc-qaLa~aL~~N~  401 (414)
                       .|-+....  ..+|+.|+|++|-+.=+|- ..+..-|+.|.
T Consensus       185 ~~lp~~~~~--~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~  224 (266)
T d1p9ag_         185 YTIPKGFFG--SHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (266)
T ss_dssp             CCCCTTTTT--TCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             cccChhHCC--CCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence             22111222  4556677777666653321 34455555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=1.1e-06  Score=72.35  Aligned_cols=37  Identities=19%  Similarity=0.128  Sum_probs=16.1

Q ss_pred             ceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       374 ~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +|+.|++++|.+++...-   ..+..-++|++|++++|+|
T Consensus        66 ~L~~L~l~~N~i~~~~~~---~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          66 RLQELLLCNNRLQQSAAI---QPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SCCEEECCSSCCCSSSTT---GGGGGCTTCCEEECTTSGG
T ss_pred             ccCeEECCCCccCCCCCc---hhhcCCCCCCEEECCCCcC
Confidence            445555555555432210   1223334455555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=6.6e-06  Score=72.09  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H  362 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~  362 (414)
                      +...++|+.++++++...+-.      .+...+ .+..+.++.|.+..      ..    .+...   .+|++|+++  .
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~------~~~~~~-~~~~l~~~~~~~~~------~~----~~~~~---~~L~~L~l~~n~  162 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVT------PLAGLS-NLQVLYLDLNQITN------IS----PLAGL---TNLQYLSIGNAQ  162 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG------GGTTCT-TCCEEECCSSCCCC------CG----GGGGC---TTCCEEECCSSC
T ss_pred             ccccccccccccccccccccc------hhcccc-chhhhhchhhhhch------hh----hhccc---cccccccccccc
Confidence            344566666666666654321      122222 55666666665554      11    11111   235555553  1


Q ss_pred             HH--hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          363 IA--ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       363 l~--~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      +.  .++..  -.+|++|+|++|.+++..      .+..-++|++|+|++|+|
T Consensus       163 ~~~~~~l~~--l~~L~~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         163 VSDLTPLAN--LSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             CCCCGGGTT--CTTCCEEECCSSCCCCCG------GGGGCTTCCEEECTTSCC
T ss_pred             cccchhhcc--cccceecccCCCccCCCh------hhcCCCCCCEEECcCCcC
Confidence            10  11222  345666666666665532      133445666666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.08  E-value=4.6e-06  Score=73.05  Aligned_cols=142  Identities=18%  Similarity=0.158  Sum_probs=96.8

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      .+|++|++++|.+..-  .    ++.+-    -++++|.+..+.+ +        ++. .+...++|+.|+|++|++.+-
T Consensus        46 ~~L~~L~l~~~~i~~l--~----~l~~l----~~L~~L~L~~n~i-~--------~l~-~~~~l~~L~~L~l~~n~i~~l  105 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV--Q----GIQYL----PNVTKLFLNGNKL-T--------DIK-PLANLKNLGWLFLDENKVKDL  105 (210)
T ss_dssp             HTCCEEECTTSCCCCC--T----TGGGC----TTCCEEECCSSCC-C--------CCG-GGTTCTTCCEEECCSSCCCCG
T ss_pred             cCccEEECcCCCCCCc--h----hHhhC----CCCCEEeCCCccc-c--------Ccc-ccccCcccccccccccccccc
Confidence            4789999999977542  1    12211    2588888888876 5        122 245678999999999999762


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~L~L  380 (414)
                            .++...+ .|+.|++++|.++.         + ..+....   .|++++++  .+.+  ...+  -.+|+.+++
T Consensus       106 ------~~l~~l~-~L~~L~l~~~~~~~---------~-~~l~~l~---~l~~l~~~~n~l~~~~~~~~--l~~L~~l~l  163 (210)
T d1h6ta2         106 ------SSLKDLK-KLKSLSLEHNGISD---------I-NGLVHLP---QLESLYLGNNKITDITVLSR--LTKLDTLSL  163 (210)
T ss_dssp             ------GGGTTCT-TCCEEECTTSCCCC---------C-GGGGGCT---TCCEEECCSSCCCCCGGGGG--CTTCSEEEC
T ss_pred             ------ccccccc-cccccccccccccc---------c-ccccccc---cccccccccccccccccccc--ccccccccc
Confidence                  3466666 89999999999876         1 1233323   37777774  1111  1122  467999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|.+++.-      .+..-++|++|++++|+|+
T Consensus       164 ~~n~l~~i~------~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         164 EDNQISDIV------PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CSSCCCCCG------GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc------cccCCCCCCEEECCCCCCC
Confidence            999998642      2556688999999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.02  E-value=1.1e-05  Score=73.81  Aligned_cols=33  Identities=9%  Similarity=0.186  Sum_probs=17.2

Q ss_pred             CceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCC
Q 015056          373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFK  411 (414)
Q Consensus       373 c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N  411 (414)
                      .+|+.|+|++|.+++.-      .+..=++|++|+|++|
T Consensus       351 ~~L~~L~l~~N~l~~l~------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         351 TNINWLSAGHNQISDLT------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCCEEECCSSCCCBCG------GGTTCTTCSEEECCCE
T ss_pred             CCCCEEECCCCcCCCCh------hhccCCCCCEeeCCCC
Confidence            45566666666655431      1333345666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-06  Score=74.82  Aligned_cols=119  Identities=13%  Similarity=0.090  Sum_probs=74.7

Q ss_pred             ccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCccccc
Q 015056          258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY  337 (414)
Q Consensus       258 ~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~  337 (414)
                      .+++|.+..+.+ +        .+.........|++|+|++|++..-      .++...+ .|++|+|++|.|+.    .
T Consensus        19 ~lr~L~L~~n~I-~--------~i~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~-~L~~L~ls~N~i~~----l   78 (162)
T d1a9na_          19 RDRELDLRGYKI-P--------VIENLGATLDQFDAIDFSDNEIRKL------DGFPLLR-RLKTLLVNNNRICR----I   78 (162)
T ss_dssp             SCEEEECTTSCC-C--------SCCCGGGGTTCCSEEECCSSCCCEE------CCCCCCS-SCCEEECCSSCCCE----E
T ss_pred             cCcEEECCCCCC-C--------ccCccccccccCCEEECCCCCCCcc------CCcccCc-chhhhhcccccccC----C
Confidence            477888888887 4        2223345567889999999988752      2344555 88899999998886    2


Q ss_pred             CCCChhhhhhcCcccCCcceeehH-----HHH--hhccccCCCceeEEEeecccCCchh-HHHHHHHHhcCCCCcEEe
Q 015056          338 DRSGPLFSLGAGKSLQSLRLLNLS-----HIA--ASLGKFFGTSVQVLNIGAIGLGSSG-FRVLQDGVTKELKLVNIN  407 (414)
Q Consensus       338 ~c~~ls~aL~~nks~~~L~~LnLs-----~l~--~agvk~L~c~Lq~L~L~~c~lg~~g-cqaLa~aL~~N~~L~~Ld  407 (414)
                      ...    .+..   +.+|++|+|+     .+.  +.+.+  -.+|+.|++++|.++... ...  .++..-++|+.||
T Consensus        79 ~~~----~~~~---l~~L~~L~L~~N~i~~~~~l~~l~~--l~~L~~L~l~~N~i~~~~~~r~--~~i~~lp~L~~LD  145 (162)
T d1a9na_          79 GEG----LDQA---LPDLTELILTNNSLVELGDLDPLAS--LKSLTYLCILRNPVTNKKHYRL--YVIYKVPQVRVLD  145 (162)
T ss_dssp             CSC----HHHH---CTTCCEEECCSCCCCCGGGGGGGGG--CTTCCEEECCSSGGGGSTTHHH--HHHHHCTTCSEET
T ss_pred             Ccc----cccc---ccccccceecccccccccccccccc--ccccchhhcCCCccccccchHH--HHHHHCCCcCeeC
Confidence            221    1211   2347788884     222  23333  567888888888887643 211  2334456788877

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=1e-05  Score=70.11  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=100.1

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      .+|++|++++|.+.  .++.    +..=    -+++.+.+..+.+ +    ..+     .+....+|+.|++++|.+..-
T Consensus        40 ~~l~~L~l~~~~i~--~l~~----l~~l----~nL~~L~Ls~N~l-~----~~~-----~l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          40 DQVTTLQADRLGIK--SIDG----VEYL----NNLTQINFSNNQL-T----DIT-----PLKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             TTCCEEECTTSCCC--CCTT----GGGC----TTCCEEECCSSCC-C----CCG-----GGTTCTTCCEEECCSSCCCCC
T ss_pred             cCCCEEECCCCCCC--Cccc----cccC----CCcCcCccccccc-c----Ccc-----cccCCcccccccccccccccc
Confidence            58999999999752  2221    2111    2477788887776 4    121     167788999999999998764


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HH--HhhccccCCCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI--AASLGKFFGTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l--~~agvk~L~c~Lq~L~L  380 (414)
                      .      ++.+.+ .|+.|++++|.++.      -.    .+.   .+.+|+.|+++  .+  .+++..  ..+++.|++
T Consensus       100 ~------~l~~l~-~L~~L~l~~~~~~~------~~----~~~---~l~~L~~L~l~~n~l~~~~~l~~--~~~L~~L~l  157 (199)
T d2omxa2         100 T------PLANLT-NLTGLTLFNNQITD------ID----PLK---NLTNLNRLELSSNTISDISALSG--LTSLQQLNF  157 (199)
T ss_dssp             G------GGTTCT-TCSEEECCSSCCCC------CG----GGT---TCTTCSEEECCSSCCCCCGGGTT--CTTCSEEEC
T ss_pred             c------cccccc-cccccccccccccc------cc----ccc---hhhhhHHhhhhhhhhcccccccc--ccccccccc
Confidence            3      355666 89999999999886      22    232   23458899885  11  123344  789999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      .+|.+++--      .+..-++|++|++++|+|+
T Consensus       158 ~~n~l~~l~------~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         158 SSNQVTDLK------PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSCCCCCG------GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccCCc------cccCCCCCCEEECCCCCCC
Confidence            999998853      3667799999999999884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=1.1e-05  Score=73.74  Aligned_cols=142  Identities=20%  Similarity=0.202  Sum_probs=97.7

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      ++|++|++++|.+...+      .+...    -.++.+.+..+.+ +        ++. .+....+|+.|++++|++..-
T Consensus       219 ~~L~~L~l~~n~l~~~~------~l~~l----~~L~~L~l~~n~l-~--------~~~-~~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         219 TNLDELSLNGNQLKDIG------TLASL----TNLTDLDLANNQI-S--------NLA-PLSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             TTCCEEECCSSCCCCCG------GGGGC----TTCSEEECCSSCC-C--------CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             CCCCEEECCCCCCCCcc------hhhcc----cccchhccccCcc-C--------CCC-cccccccCCEeeccCcccCCC
Confidence            58999999999876532      12111    2477788877776 4        111 266788999999999998643


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHHh--hccccCCCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAA--SLGKFFGTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~~--agvk~L~c~Lq~L~L  380 (414)
                      .      .+.... .++.+++++|.+++      -.    .+....   ++++|+|+  .+.+  .+..  -.+|++|+|
T Consensus       279 ~------~~~~~~-~l~~l~~~~n~l~~------~~----~~~~~~---~l~~L~ls~n~l~~l~~l~~--l~~L~~L~L  336 (384)
T d2omza2         279 S------PLAGLT-ALTNLELNENQLED------IS----PISNLK---NLTYLTLYFNNISDISPVSS--LTKLQRLFF  336 (384)
T ss_dssp             G------GGTTCT-TCSEEECCSSCCSC------CG----GGGGCT---TCSEEECCSSCCSCCGGGGG--CTTCCEEEC
T ss_pred             C------cccccc-cccccccccccccc------cc----ccchhc---ccCeEECCCCCCCCCccccc--CCCCCEEEC
Confidence            2      244455 78999999999987      11    232333   48888884  2211  2333  568999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|.+++-.      .+..-++|++|++++|+|+
T Consensus       337 ~~n~l~~l~------~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         337 ANNKVSDVS------SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSSCCCCCG------GGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCh------hHcCCCCCCEEECCCCcCC
Confidence            999998743      3566789999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.88  E-value=1.5e-05  Score=69.70  Aligned_cols=142  Identities=19%  Similarity=0.217  Sum_probs=89.9

Q ss_pred             CCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCch
Q 015056          225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD  304 (414)
Q Consensus       225 ~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~  304 (414)
                      .+|++|++.+|.+.  .   + +.+.+-    =+++++.+..+.+ +    ...     .+.....|+.|++++|.+.+-
T Consensus        41 ~~L~~L~l~~~~i~--~---l-~~l~~l----~~L~~L~ls~n~i-~----~~~-----~l~~l~~l~~l~~~~n~~~~i  100 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--T---I-EGVQYL----NNLIGLELKDNQI-T----DLA-----PLKNLTKITELELSGNPLKNV  100 (227)
T ss_dssp             HTCCEEECTTSCCC--C---C-TTGGGC----TTCCEEECCSSCC-C----CCG-----GGTTCCSCCEEECCSCCCSCC
T ss_pred             CCcCEEECCCCCCC--c---c-hhHhcC----CCCcEeecCCcee-e----ccc-----ccccccccccccccccccccc
Confidence            48899999988652  2   2 222221    2367777777666 3    111     157778888888888887653


Q ss_pred             hHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--HHH--hhccccCCCceeEEEe
Q 015056          305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIA--ASLGKFFGTSVQVLNI  380 (414)
Q Consensus       305 gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~l~--~agvk~L~c~Lq~L~L  380 (414)
                      .      ++.+.+ +|++|++++|.+.+    .      ..+.....   +..+.++  .+.  ....+  ..+|+.|++
T Consensus       101 ~------~l~~l~-~L~~l~l~~~~~~~----~------~~~~~~~~---~~~l~~~~~~~~~~~~~~~--~~~L~~L~l  158 (227)
T d1h6ua2         101 S------AIAGLQ-SIKTLDLTSTQITD----V------TPLAGLSN---LQVLYLDLNQITNISPLAG--LTNLQYLSI  158 (227)
T ss_dssp             G------GGTTCT-TCCEEECTTSCCCC----C------GGGTTCTT---CCEEECCSSCCCCCGGGGG--CTTCCEEEC
T ss_pred             c------cccccc-cccccccccccccc----c------chhccccc---hhhhhchhhhhchhhhhcc--ccccccccc
Confidence            3      355666 88888888887775    1      11212222   4455542  111  11233  677999999


Q ss_pred             ecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          381 GAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       381 ~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      ++|.+++...      +..-++|++||+++|.|.
T Consensus       159 ~~n~~~~~~~------l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         159 GNAQVSDLTP------LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             CSSCCCCCGG------GTTCTTCCEEECCSSCCC
T ss_pred             cccccccchh------hcccccceecccCCCccC
Confidence            9999987542      556689999999999873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.84  E-value=5.6e-07  Score=79.41  Aligned_cols=104  Identities=23%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             HhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH---
Q 015056          285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---  361 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs---  361 (414)
                      |....+|++|+|++|++.+=      .+|.... +|++|+|++|.|++      -..+ ...     ..+|++|+++   
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i------~~l~~l~-~L~~L~Ls~N~i~~------i~~~-~~~-----~~~L~~L~l~~N~  104 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI------SSLSGME-NLRILSLGRNLIKK------IENL-DAV-----ADTLEELWISYNQ  104 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC------CCHHHHT-TCCEEECCEEEECS------CSSH-HHH-----HHHCCEEECSEEE
T ss_pred             HhcccccceeECcccCCCCc------ccccCCc-cccChhhccccccc------cccc-ccc-----ccccccccccccc
Confidence            44456677777777776541      2233333 67777777777765      1111 111     1125566653   


Q ss_pred             --HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          362 --HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       362 --~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                        .+ ..+.+  -.+|+.|+|++|.+++.+.   -..|..-++|++|++++|.|
T Consensus       105 i~~l-~~~~~--l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         105 IASL-SGIEK--LVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CCCH-HHHHH--HHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSSHH
T ss_pred             cccc-ccccc--cccccccccccchhccccc---cccccCCCccceeecCCCcc
Confidence              22 11222  3456777777777766432   12345556677777777653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.5e-05  Score=71.88  Aligned_cols=38  Identities=13%  Similarity=0.013  Sum_probs=28.9

Q ss_pred             CCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      -.+|+.|+++.|.++...-.+    +..-.+|+.|++++|.+
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~----~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEA----LAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHH----HTTCTTCCEEECCSSCE
T ss_pred             hhhcccccccccccccccccc----cccccccCEEEecCCCC
Confidence            367888899888888766544    45567899999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.1e-06  Score=69.67  Aligned_cols=17  Identities=18%  Similarity=0.094  Sum_probs=8.9

Q ss_pred             hcCCcccEEEccCCCCC
Q 015056          286 SSGRSLCSLKLRHCHLD  302 (414)
Q Consensus       286 ssn~sL~~L~Ls~N~L~  302 (414)
                      ...++|+.|+|++|++.
T Consensus        60 ~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          60 PLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             CCCSSCCEEECCSSCCC
T ss_pred             ccCcchhhhhccccccc
Confidence            44455555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=3.5e-05  Score=62.91  Aligned_cols=52  Identities=19%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             cceeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          355 LRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       355 L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      |++|||+     .+-.++..  -.+|++|++++|.+++-.      .+..-++|++|++++|+|+
T Consensus        22 L~~L~ls~N~l~~lp~~~~~--l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          22 VTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             CCEEECCSSCCCCCCGGGGG--CTTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSSCCC
T ss_pred             CCEEECCCCccCcchhhhhh--hhcccccccccccccccC------ccccccccCeEECCCCccC
Confidence            6666663     22222333  467899999999998752      3566789999999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.53  E-value=1.8e-05  Score=71.70  Aligned_cols=59  Identities=19%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             CCcceeehH-----HHHhhccccCCCceeEEEeecccCCchhHHHHH--HHHhcCCCCcEEecCCCCC
Q 015056          353 QSLRLLNLS-----HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQ--DGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       353 ~~L~~LnLs-----~l~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa--~aL~~N~~L~~LdLs~N~i  413 (414)
                      ++|+.|+|+     .+.+++.+  -.+|+.|+|++|.++.-+..+..  .++..+.+|+.|+|++|.+
T Consensus       219 ~~L~~L~L~~N~L~~lp~~l~~--l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         219 PHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TTCCEEECCSSCCSSCCTTTTT--CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccceeeeccccccccccccccc--ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            346666663     23233333  45677777777777765443322  3455666777777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.48  E-value=8.8e-06  Score=74.19  Aligned_cols=164  Identities=15%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      +.+.++|++|+|++|.+.......+.        ....++.+.+....+ .   ...+    ..+....+|+.+++++|.
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~~~~--------~~~~L~~l~l~~N~~-~---~~~p----~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPDFLS--------QIKTLVTLDFSYNAL-S---GTLP----PSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGG--------GCTTCCEEECCSSEE-E---SCCC----GGGGGCTTCCEEECCSSC
T ss_pred             cccccccchhhhcccccccccccccc--------chhhhcccccccccc-c---ccCc----hhhccCcccceeeccccc
Confidence            34556888888888877543222111        112355555554444 2   1122    235677888888898888


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccc----cC--------CC---ChhhhhhcCcccCCcceeehH--HH
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK----YD--------RS---GPLFSLGAGKSLQSLRLLNLS--HI  363 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~----~~--------c~---~ls~aL~~nks~~~L~~LnLs--~l  363 (414)
                      +....    -..+......++.+++++|.+++....    ..        +.   .....+   ..+.+|+.|+++  .+
T Consensus       161 l~~~i----p~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~---~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         161 ISGAI----PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF---GSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             CEEEC----CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC---CTTSCCSEEECCSSEE
T ss_pred             ccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence            75321    112233333457788888877651110    00        00   000111   123346666663  11


Q ss_pred             ---HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 ---AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 ---~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                         -.....  ..+++.|+|+.|.++..    +-..+..-++|++|||++|+|
T Consensus       234 ~~~~~~~~~--~~~L~~L~Ls~N~l~g~----iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         234 AFDLGKVGL--SKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCBGGGCCC--CTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccc--ccccccccCccCeeccc----CChHHhCCCCCCEEECcCCcc
Confidence               111222  56788888888888742    223344557788888888875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.47  E-value=1.6e-05  Score=68.36  Aligned_cols=104  Identities=16%  Similarity=0.145  Sum_probs=54.6

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--H---H
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--H---I  363 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--~---l  363 (414)
                      .+++.|+|++|++...-..   ..+.+.+ .|++|+|++|.|..    ..-    .++....   +|++|+|+  .   +
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~---~~f~~l~-~L~~L~L~~N~i~~----~~~----~~~~~~~---~L~~L~Ls~N~l~~l   93 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSD---GLFGRLP-HLVKLELKRNQLTG----IEP----NAFEGAS---HIQELQLGENKIKEI   93 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCS---CSGGGCT-TCCEEECCSSCCCC----BCT----TTTTTCT---TCCEEECCSCCCCEE
T ss_pred             CCCCEEEeCCCCCcccccc---cccCCCc-eEeeeecccccccc----ccc----ccccccc---ccceeeecccccccc
Confidence            4667777777777421000   0112223 67777777777765    111    2332233   36677764  1   1


Q ss_pred             -HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 -AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 -~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                       .++...  -.+|+.|+|++|.|+.---    .++..-.+|++|+|++|.+
T Consensus        94 ~~~~F~~--l~~L~~L~L~~N~l~~i~~----~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          94 SNKMFLG--LHQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSSSSTT--CTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCB
T ss_pred             CHHHHhC--CCcccccccCCccccccCH----HHhcCCccccccccccccc
Confidence             112222  3567777777777765221    1234456677777777765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00018  Score=64.63  Aligned_cols=135  Identities=15%  Similarity=0.086  Sum_probs=84.3

Q ss_pred             hhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCC
Q 015056          221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH  300 (414)
Q Consensus       221 ~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~  300 (414)
                      .++.++|++|++++|.+......    ... .   --.++.+.+....+ +    .++   ..+++...+|++|+|++|.
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~----~~~-~---~~~L~~l~l~~N~l-~----~i~---~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPG----LFR-G---LAALQYLYLQDNAL-Q----ALP---DDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTT----TTT-T---CTTCCEEECCSSCC-C----CCC---TTTTTTCTTCCEEECCSSC
T ss_pred             hcccccCCEEecCCccccccccc----ccc-h---hcccchhhhccccc-c----ccC---hhHhccccchhhcccccCc
Confidence            34557899999999976432211    111 1   12356677776665 4    121   1245667889999999999


Q ss_pred             CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------HHHhhccccCCCc
Q 015056          301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------HIAASLGKFFGTS  374 (414)
Q Consensus       301 L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------~l~~agvk~L~c~  374 (414)
                      +..-..    .++...+ .|+.|++++|.|++    ..-    .++..   +.+|++||++      ...++...  -.+
T Consensus       165 l~~l~~----~~f~~l~-~L~~l~l~~N~l~~----i~~----~~f~~---l~~L~~L~l~~N~i~~~~~~~~~~--~~~  226 (284)
T d1ozna_         165 ISSVPE----RAFRGLH-SLDRLLLHQNRVAH----VHP----HAFRD---LGRLMTLYLFANNLSALPTEALAP--LRA  226 (284)
T ss_dssp             CCEECT----TTTTTCT-TCCEEECCSSCCCE----ECT----TTTTT---CTTCCEEECCSSCCSCCCHHHHTT--CTT
T ss_pred             ccccch----hhhcccc-ccchhhhhhccccc----cCh----hHhhh---hhhccccccccccccccccccccc--ccc
Confidence            863211    2233445 89999999999997    222    23433   3458899994      22233334  567


Q ss_pred             eeEEEeecccCCchh
Q 015056          375 VQVLNIGAIGLGSSG  389 (414)
Q Consensus       375 Lq~L~L~~c~lg~~g  389 (414)
                      |+.|+|++|.+.-++
T Consensus       227 L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         227 LQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CCEEECCSSCEECSG
T ss_pred             cCEEEecCCCCCCCc
Confidence            999999999887543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.44  E-value=6.7e-05  Score=67.75  Aligned_cols=107  Identities=21%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             HHHHhcCCcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH
Q 015056          282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS  361 (414)
Q Consensus       282 as~Lssn~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs  361 (414)
                      ...+...++|+.+++++|.+..-...       -++ +|++|++++|.++...    .    .++....   .+++|+++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l~~~-------~~~-~L~~L~l~~n~~~~~~----~----~~~~~~~---~l~~L~~s  203 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTIPQG-------LPP-SLTELHLDGNKITKVD----A----ASLKGLN---NLAKLGLS  203 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSS-------CCT-TCSEEECTTSCCCEEC----T----GGGTTCT---TCCEEECC
T ss_pred             ccccccccccCccccccCCccccCcc-------cCC-ccCEEECCCCcCCCCC----h----hHhhccc---cccccccc
Confidence            34567778899999999988542211       123 8999999999988711    1    2443333   37788874


Q ss_pred             --HHH----hhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          362 --HIA----ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       362 --~l~----~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                        .+.    +....  -.+|++|+|++|.|+.-     ..++...++|++|+|++|.|+
T Consensus       204 ~n~l~~~~~~~~~~--l~~L~~L~L~~N~L~~l-----p~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         204 FNSISAVDNGSLAN--TPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             SSCCCEECTTTGGG--STTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccc--cccceeeeccccccccc-----ccccccccCCCEEECCCCccC
Confidence              111    12223  57899999999999863     345677899999999999984

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.39  E-value=1.8e-05  Score=69.44  Aligned_cols=12  Identities=8%  Similarity=0.066  Sum_probs=6.1

Q ss_pred             CCCcEEEcccCC
Q 015056          225 ETLASLEFLHCK  236 (414)
Q Consensus       225 ~tLt~L~L~~~~  236 (414)
                      ++|++|+|++|.
T Consensus        48 ~~L~~L~Ls~n~   59 (198)
T d1m9la_          48 KACKHLALSTNN   59 (198)
T ss_dssp             TTCCEEECSEEE
T ss_pred             cccceeECcccC
Confidence            345555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.34  E-value=6.6e-05  Score=64.40  Aligned_cols=99  Identities=16%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             cEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH------HHHh
Q 015056          292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS------HIAA  365 (414)
Q Consensus       292 ~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs------~l~~  365 (414)
                      +.++.++|.|..=-        .+-+-++++|+|++|.|+...    ..   ..+....+   |++|+|+      ...+
T Consensus        11 ~~v~Cs~~~L~~iP--------~~lp~~l~~L~Ls~N~i~~~~----~~---~~f~~l~~---L~~L~L~~N~i~~~~~~   72 (192)
T d1w8aa_          11 TTVDCTGRGLKEIP--------RDIPLHTTELLLNDNELGRIS----SD---GLFGRLPH---LVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TEEECTTSCCSSCC--------SCCCTTCSEEECCSCCCCSBC----CS---CSGGGCTT---CCEEECCSSCCCCBCTT
T ss_pred             CEEEEeCCCcCccC--------CCCCCCCCEEEeCCCCCcccc----cc---cccCCCce---Eeeeecccccccccccc
Confidence            46777777764211        112348999999999998622    22   24433344   9999995      2223


Q ss_pred             hccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCCC
Q 015056          366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPIS  414 (414)
Q Consensus       366 agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i~  414 (414)
                      +...  ..+|+.|+|++|.|+.-...    ++..-++|++|+|++|+|+
T Consensus        73 ~~~~--~~~L~~L~Ls~N~l~~l~~~----~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          73 AFEG--ASHIQELQLGENKIKEISNK----MFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             TTTT--CTTCCEEECCSCCCCEECSS----SSTTCTTCCEEECCSSCCC
T ss_pred             cccc--ccccceeeeccccccccCHH----HHhCCCcccccccCCcccc
Confidence            3333  78899999999999985432    3455689999999999985

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.99  E-value=0.0013  Score=58.46  Aligned_cols=136  Identities=18%  Similarity=0.152  Sum_probs=80.4

Q ss_pred             CCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056          226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  305 (414)
Q Consensus       226 tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g  305 (414)
                      +|++|+|+++.|..  +         |.. -.++++|.+....+ +    +.+.       .-.+|+.|++++|.+..  
T Consensus        39 ~l~~LdLs~~~L~~--l---------p~~-~~~L~~L~Ls~N~l-~----~lp~-------~~~~L~~L~l~~n~l~~--   92 (353)
T d1jl5a_          39 QAHELELNNLGLSS--L---------PEL-PPHLESLVASCNSL-T----ELPE-------LPQSLKSLLVDNNNLKA--   92 (353)
T ss_dssp             TCSEEECTTSCCSC--C---------CSC-CTTCSEEECCSSCC-S----SCCC-------CCTTCCEEECCSSCCSC--
T ss_pred             CCCEEEeCCCCCCC--C---------CCC-CCCCCEEECCCCCC-c----cccc-------chhhhhhhhhhhcccch--
Confidence            56888888887743  1         111 13577887776555 4    2221       13579999999998753  


Q ss_pred             HHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhccccCCCceeEEEeecccC
Q 015056          306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGL  385 (414)
Q Consensus       306 aklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk~L~c~Lq~L~L~~c~l  385 (414)
                             +.+-+..|++|+|++|.|+.    .  .    ..   .++.+|++|+++.-.-.........+..|++..+..
T Consensus        93 -------l~~lp~~L~~L~L~~n~l~~----l--p----~~---~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~  152 (353)
T d1jl5a_          93 -------LSDLPPLLEYLGVSNNQLEK----L--P----EL---QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL  152 (353)
T ss_dssp             -------CCSCCTTCCEEECCSSCCSS----C--C----CC---TTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             -------hhhhcccccccccccccccc----c--c----ch---hhhccceeeccccccccccccccccccchhhccccc
Confidence                   33445579999999999987    1  1    11   123348888884111111111245566777766665


Q ss_pred             CchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          386 GSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       386 g~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .....      +.....++.|+++.|.+
T Consensus       153 ~~~~~------l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         153 EELPE------LQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SSCCC------CTTCTTCCEEECCSSCC
T ss_pred             ccccc------ccccccceecccccccc
Confidence            54321      34456677777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.90  E-value=0.00043  Score=61.64  Aligned_cols=94  Identities=19%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             cccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehHHHHhhccc
Q 015056          290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK  369 (414)
Q Consensus       290 sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs~l~~agvk  369 (414)
                      +|+.|+|++|.|..         |-+-...|++|+|++|+|+.    ..     ..+      ++|++|+++...-.-..
T Consensus        39 ~l~~LdLs~~~L~~---------lp~~~~~L~~L~Ls~N~l~~----lp-----~~~------~~L~~L~l~~n~l~~l~   94 (353)
T d1jl5a_          39 QAHELELNNLGLSS---------LPELPPHLESLVASCNSLTE----LP-----ELP------QSLKSLLVDNNNLKALS   94 (353)
T ss_dssp             TCSEEECTTSCCSC---------CCSCCTTCSEEECCSSCCSS----CC-----CCC------TTCCEEECCSSCCSCCC
T ss_pred             CCCEEEeCCCCCCC---------CCCCCCCCCEEECCCCCCcc----cc-----cch------hhhhhhhhhhcccchhh
Confidence            46666666666631         11222356666666666665    11     111      12555555311100111


Q ss_pred             cCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       370 ~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      -+-..|+.|+|++|.++..-.      ...-++|++|++++|.+
T Consensus        95 ~lp~~L~~L~L~~n~l~~lp~------~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          95 DLPPLLEYLGVSNNQLEKLPE------LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SCCTTCCEEECCSSCCSSCCC------CTTCTTCCEEECCSSCC
T ss_pred             hhccccccccccccccccccc------hhhhccceeeccccccc
Confidence            112346666666666654311      12234566666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00046  Score=58.06  Aligned_cols=84  Identities=20%  Similarity=0.122  Sum_probs=46.5

Q ss_pred             HhcCCcccEEEccCCC-CCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCChhhhhhcCcccCCcceeehH--
Q 015056          285 LSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--  361 (414)
Q Consensus       285 Lssn~sL~~L~Ls~N~-L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs--  361 (414)
                      +....+|++|+|++|+ +..-..    .++...+ .|++|+|++|.|+.    ..-    .++...++   |++|+|+  
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~----~~f~~l~-~L~~L~Ls~N~l~~----i~~----~~f~~l~~---L~~L~Ls~N   90 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLEL----RDLRGLG-ELRNLTIVKSGLRF----VAP----DAFHFTPR---LSRLNLSFN   90 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG----GGSCSCC-CCSEEECCSSCCCE----ECT----TGGGSCSC---CCEEECCSS
T ss_pred             ccCccccCeeecCCCccccccCc----hhhcccc-ccCcceeeccccCC----ccc----cccccccc---ccceeccCC
Confidence            3455677788886653 543222    1234455 77888888887776    222    24433343   7777774  


Q ss_pred             ---HHHhhccccCCCceeEEEeecccCC
Q 015056          362 ---HIAASLGKFFGTSVQVLNIGAIGLG  386 (414)
Q Consensus       362 ---~l~~agvk~L~c~Lq~L~L~~c~lg  386 (414)
                         .+......  ..+|+.|+|++|.+.
T Consensus        91 ~l~~l~~~~~~--~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQ--GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTC--SCCCCEEECCSSCCC
T ss_pred             CCcccChhhhc--cccccccccCCCccc
Confidence               22222222  445677777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0012  Score=55.57  Aligned_cols=91  Identities=21%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             HHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccccccccceeeccccccccCCCcccHHHHHHHHhcCCcccEEEccC
Q 015056          219 LLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRH  298 (414)
Q Consensus       219 ~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v~~C~lq~lsl~tc~~~~~~~~~~~~~Las~Lssn~sL~~L~Ls~  298 (414)
                      .+..+.++|+.|+|++|.++.                             + +        .+..++...++|+.|+|++
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~-----------------------------l-~--------~~~~~~~~l~~L~~L~Ls~  100 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYR-----------------------------L-D--------DMSSIVQKAPNLKILNLSG  100 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCC-----------------------------C-S--------GGGTHHHHSTTCCCCCCTT
T ss_pred             HHHHhCCCCCEeeCCCccccC-----------------------------C-c--------hhHHHHhhCCccccccccc
Confidence            344556799999999996422                             1 2        2344556788999999999


Q ss_pred             CCCCchhHHHHHHHhccCCCCccEEeccCCCCCCcccccCCCC---hhhhhhcCcccCCcceee
Q 015056          299 CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSG---PLFSLGAGKSLQSLRLLN  359 (414)
Q Consensus       299 N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~wl~~~~c~~---ls~aL~~nks~~~L~~Ln  359 (414)
                      |.+.+-..-   ..+. .. .|++|+|++|.|+.    ..+..   ....+   +.+.+|+.||
T Consensus       101 N~i~~l~~l---~~l~-~~-~L~~L~L~~Npl~~----~~~~~~~y~~~i~---~~~P~L~~LD  152 (162)
T d1koha1         101 NELKSEREL---DKIK-GL-KLEELWLDGNSLSD----TFRDQSTYISAIR---ERFPKLLRLD  152 (162)
T ss_dssp             SCCCCGGGH---HHHT-TC-CCSSCCCTTSTTSS----SSSSHHHHHHHHH---TTSTTCCEET
T ss_pred             Cccccchhh---hhhh-cc-ccceeecCCCCcCc----CcccchhHHHHHH---HHCCCCCEEC
Confidence            999885441   2233 23 69999999999986    33321   22233   2344588887

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.42  E-value=0.00027  Score=64.04  Aligned_cols=43  Identities=16%  Similarity=0.173  Sum_probs=20.2

Q ss_pred             HhcCCcccEEEccC-CCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       285 Lssn~sL~~L~Ls~-N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      +....+|++|+|++ |.+...    +=..+.+.+ +|++|+|++|.|++
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~----iP~~i~~L~-~L~~L~Ls~N~l~~  115 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGP----IPPAIAKLT-QLHYLYITHTNVSG  115 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESC----CCGGGGGCT-TCSEEEEEEECCEE
T ss_pred             HhcCccccccccccccccccc----ccccccccc-ccchhhhccccccc
Confidence            34455666666654 433211    001223334 56666666666554

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0038  Score=48.37  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             HHHHHHHhccCCCCCCcccCCChhhHHHHHhcCCchhhhhhhcc-CCccccCCCCCCCcccccCcccccCCCchHHHHHH
Q 015056           12 ALAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTK-MPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKL   90 (414)
Q Consensus        12 ~~~i~~~~~~~~~~~P~~~~Lp~~~~~~v~~~Lpp~aL~~l~~~-~p~~~~~~~~~~~~~~~~~~kr~r~~~~~~~Wkrl   90 (414)
                      +.++++.+. .--..-.+..||.|++..|+..|||.-|-.+... --++   .+...                +..||++
T Consensus         3 ~~~~~~~~~-p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~---~l~~~----------------~~lW~~~   62 (102)
T d2ovrb1           3 VKHMMQVIE-PQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR---ILAED----------------NLLWREK   62 (102)
T ss_dssp             HHHHHHHHC-CCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHH---HHHTC----------------SHHHHHH
T ss_pred             HHHHHHHcC-chhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHHCC----------------HHHHHHH
Confidence            345655554 0001244688999999999999999855544311 0000   01111                2389999


Q ss_pred             HhccCCCCcC---------CCC-CCchHHHHHHHHH
Q 015056           91 FKTRWSGFTD---------QIE-PVDWQQRYWEAHV  116 (414)
Q Consensus        91 ~~~RW~~~~~---------~~~-~~~Wkq~y~E~hl  116 (414)
                      |+.+|.....         ... +.+||++|-++|-
T Consensus        63 ~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~~~   98 (102)
T d2ovrb1          63 CKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHR   98 (102)
T ss_dssp             HTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHH
T ss_pred             HHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHHHH
Confidence            9988754111         111 4679999999884

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0057  Score=51.04  Aligned_cols=99  Identities=17%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             ccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCC-CCCCcccccCCCChhhhhhcCcccCCcceeehH-----HH-
Q 015056          291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----HI-  363 (414)
Q Consensus       291 L~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n-~Lt~wl~~~~c~~ls~aL~~nks~~~L~~LnLs-----~l-  363 (414)
                      ...++.+++.+.+--     ..+...+ +|++|+|++| .|+.    ..-    .++   .++.+|++|+|+     .+ 
T Consensus        10 ~~~l~c~~~~~~~~p-----~~l~~l~-~l~~L~l~~n~~l~~----i~~----~~f---~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3          10 SSGLRCTRDGALDSL-----HHLPGAE-NLTELYIENQQHLQH----LEL----RDL---RGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             SSCEECCSSCCCTTT-----TTSCSCS-CCSEEECCSCSSCCE----ECG----GGS---CSCCCCSEEECCSSCCCEEC
T ss_pred             CCeEEecCCCCccCc-----ccccCcc-ccCeeecCCCccccc----cCc----hhh---ccccccCcceeeccccCCcc
Confidence            345666666664321     2233334 7788888655 4775    211    233   233447777774     22 


Q ss_pred             HhhccccCCCceeEEEeecccCCchhHHHHHHHHhcCCCCcEEecCCCCC
Q 015056          364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINIRFKPI  413 (414)
Q Consensus       364 ~~agvk~L~c~Lq~L~L~~c~lg~~gcqaLa~aL~~N~~L~~LdLs~N~i  413 (414)
                      .++...  -.+|++|+|++|.|+.-.-.+     -.+..|++|+|++|.+
T Consensus        73 ~~~f~~--l~~L~~L~Ls~N~l~~l~~~~-----~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          73 PDAFHF--TPRLSRLNLSFNALESLSWKT-----VQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TTGGGS--CSCCCEEECCSSCCSCCCSTT-----TCSCCCCEEECCSSCC
T ss_pred             cccccc--cccccceeccCCCCcccChhh-----hccccccccccCCCcc
Confidence            233334  567888888888887633222     2455688888888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0026  Score=53.41  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=26.7

Q ss_pred             CCceeEEEeecccCCch---hHHHHHHHHhcCCCCcEEe
Q 015056          372 GTSVQVLNIGAIGLGSS---GFRVLQDGVTKELKLVNIN  407 (414)
Q Consensus       372 ~c~Lq~L~L~~c~lg~~---gcqaLa~aL~~N~~L~~Ld  407 (414)
                      ..++++|++.+|.++..   .......++..=++|+.||
T Consensus       114 ~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         114 GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            45678888888888753   3456777777778899887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0068  Score=52.13  Aligned_cols=88  Identities=8%  Similarity=-0.008  Sum_probs=47.3

Q ss_pred             ccccceeeeec-cchHhHHHHHHHHhhCCCCCcEEEcccCCCChhHHHHHHhhhcCccc--cccccceeeccccccccCC
Q 015056          197 SKLQSLVLRWI-RFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK--RIHKIENLSIDISSFIENC  273 (414)
Q Consensus       197 ckLq~L~L~~~-~s~~~~~~L~~~L~~n~~tLt~L~L~~~~L~~~~m~~LC~~L~~p~v--~~C~lq~lsl~tc~~~~~~  273 (414)
                      ..+++|+|++. .+...-    .+| ++.++|++|+|++|.+...         ..+..  .-..++++.+..+..... 
T Consensus        29 ~~l~~L~Ls~n~i~~l~~----~~f-~~l~~L~~L~ls~n~~~~~---------i~~~~f~~l~~l~~l~~~~~n~l~~-   93 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK----GAF-SGFGDLEKIEISQNDVLEV---------IEADVFSNLPKLHEIRIEKANNLLY-   93 (242)
T ss_dssp             SCCSEEEEESCCCCEECT----TTT-TTCTTCCEEEEESCTTCCE---------ECSSSEESCTTCCEEEEECCTTCCE-
T ss_pred             CCCCEEECcCCcCCccCh----hHh-hccchhhhhhhccccccce---------eeccccccccccccccccccccccc-
Confidence            36777877764 221110    012 4456999999999965331         00100  012345555543322121 


Q ss_pred             CcccHHHHHHHHhcCCcccEEEccCCCCCchh
Q 015056          274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF  305 (414)
Q Consensus       274 ~~~~~~~Las~Lssn~sL~~L~Ls~N~L~d~g  305 (414)
                         .   ...++...+.|++|++++|.+.+..
T Consensus        94 ---~---~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          94 ---I---NPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             ---E---CTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             ---c---ccccccccccccccccchhhhcccc
Confidence               1   1234566788999999999886543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.091  Score=44.67  Aligned_cols=39  Identities=15%  Similarity=0.135  Sum_probs=23.3

Q ss_pred             CcccEEEccCCCCCchhHHHHHHHhccCCCCccEEeccCCCCCC
Q 015056          289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG  332 (414)
Q Consensus       289 ~sL~~L~Ls~N~L~d~gaklL~~~Ll~~~C~L~~LdLs~n~Lt~  332 (414)
                      ++++.|+|++|++.-=.-    .++...+ +|++|+|++|.+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~----~~f~~l~-~L~~L~ls~n~~~~   67 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK----GAFSGFG-DLEKIEISQNDVLE   67 (242)
T ss_dssp             SCCSEEEEESCCCCEECT----TTTTTCT-TCCEEEEESCTTCC
T ss_pred             CCCCEEECcCCcCCccCh----hHhhccc-hhhhhhhccccccc
Confidence            457777777777742110    1233344 77777777777765