Citrus Sinensis ID: 015057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
ccccccccEEEEEEEccccccEEEEEcccccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEEccccEEEEEccccEEEEEccccccccccccccEEEEEEEEcccccEEEEEccccccEEEEEccccEEEEEEcccccEEcccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEcccccEEEEccccEEEEEccccccccEEEEEEEEccccccEEEEEccccEEEEEEcccEEEEEccccccccccccccccccccEEEccccccEEEEEEcccccEEEEEcccccccccccccc
cccEEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHcccEEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHccccEEEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEccccEEEccccEcc
MAELEAEKMVEeetgkekggellfCGSTCwdavgrrkgaldgnlvsptrlrplvgvDIRFVAAGCVSCHCvavdvegrcytwgrnergqlghgdkiqrdrpTIVSELSKYkikkagagrshtvvvtedgnslafgwnkhgqlgsgsirneiepspvrclVSEVTATACGADFTVWLSSVEGASilnaglpqygqlghgtdneyntkdssVKLAYEAQPRPRAIAALAGETIVKVACGtnhtvavdskgyvytwgfggygrlghreqkdewvprrvdvfqrnnvlppeavisagsvnssctagggqlymwgklknngddwmypkplmdlsgwnlrcmdsgnmhhfvgadssciswghaqygelgygpygqkssampkkvdiLEGMHVISVACGYGhslvivdrtnvgerldqvil
maeleaekmveeetgkekggelLFCGSTCWDAVGRrkgaldgnlvsptrlrpLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGrnergqlghgdkiqrdrpTIVSELSkykikkagagrshtvvvTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTnhtvavdskgyvyTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPpeavisagsvnsSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
maeleaekmveeetgkekggeLLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
********************ELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGH*********TIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHG*************LAYE***RPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGE*******
*******KMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
*****************KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGT*********SVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQVIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
Q9P258522 Protein RCC2 OS=Homo sapi yes no 0.944 0.749 0.383 1e-72
Q8BK67520 Protein RCC2 OS=Mus muscu yes no 0.917 0.730 0.384 2e-72
Q52KW8513 Protein RCC2 homolog OS=X N/A no 0.944 0.762 0.376 3e-71
Q6NYE2495 Protein RCC2 homolog OS=D yes no 0.958 0.802 0.363 4e-67
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.717 0.060 0.280 1e-31
Q9FN03440 Ultraviolet-B receptor UV no no 0.782 0.736 0.313 1e-30
O95714 4834 E3 ubiquitin-protein liga no no 0.596 0.051 0.319 1e-29
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.596 0.051 0.319 1e-29
Q6P798 551 RCC1 and BTB domain-conta no no 0.652 0.490 0.310 1e-26
Q5RCZ7 551 RCC1 and BTB domain-conta no no 0.652 0.490 0.317 2e-26
>sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2 Back     alignment and function desciption
 Score =  274 bits (700), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 163/425 (38%), Positives = 235/425 (55%), Gaps = 34/425 (8%)

Query: 1   MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGA--------LDGNLVSPTRLRP 52
           + E E  K   +  G +  G+LL  G+T WD +GR++          L  NL  P R   
Sbjct: 85  ITEPEHTKERVKLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGC 144

Query: 53  LVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKI 112
           L GV +R V +G  + H + +  EG+ ++WGRNE+GQLGHGD  + + P ++  LS   I
Sbjct: 145 LAGVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVI 204

Query: 113 KKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS--EVTATACGA 170
             A  GR+HT+ +TE G+  AFG NK GQLG G+  + + PSP + + +   +T  ACGA
Sbjct: 205 VSAACGRNHTLALTETGSVFAFGENKMGQLGLGNQTDAV-PSPAQIMYNGQPITKMACGA 263

Query: 171 DFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGET 230
           +F++ +      ++ + G P+YGQLGH +D ++  +  + ++ Y+ +  PR +A    +T
Sbjct: 264 EFSMIMDC--KGNLYSFGCPEYGQLGHNSDGKFIAR--AQRIEYDCELVPRRVAIFIEKT 319

Query: 231 ------------IVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVF 278
                       +  VACG NHT+ +DS+  V++WGFGGYGRLGH EQKDE VPR V +F
Sbjct: 320 KDGQILPVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLF 379

Query: 279 QRNNVLPPEAV--ISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCM 336
                 P      I AG   S   +  G L+ WG    + +  MYPK + DL GW +R +
Sbjct: 380 D----FPGRGASQIYAGYTCSFAVSEVGGLFFWGATNTSRESTMYPKAVQDLCGWRIRSL 435

Query: 337 DSGNMHHFVGADSSCISWGHA-QYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGH 395
             G     V AD S ISWG +  +GELGYG +  KSS   ++V  L+G+    VA GY H
Sbjct: 436 ACGKSSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSH 495

Query: 396 SLVIV 400
           SLVI 
Sbjct: 496 SLVIA 500
Required for completion of mitosis and cytokinesis. May function as a guanine nucleotide exchange factor for the small GTPase RAC1.
Homo sapiens (taxid: 9606)
>sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
302142613 542 unnamed protein product [Vitis vinifera] 0.990 0.756 0.861 0.0
255538862 529 Protein RCC2, putative [Ricinus communis 0.995 0.778 0.853 0.0
224082962 539 predicted protein [Populus trichocarpa] 0.995 0.764 0.857 0.0
225458061 548 PREDICTED: protein RCC2 homolog [Vitis v 0.990 0.748 0.846 0.0
224065999 550 predicted protein [Populus trichocarpa] 0.944 0.710 0.884 0.0
449460213 543 PREDICTED: protein RCC2 homolog [Cucumis 0.949 0.723 0.862 0.0
356509755 538 PREDICTED: protein RCC2-like [Glycine ma 0.944 0.726 0.879 0.0
356518146 548 PREDICTED: protein RCC2-like [Glycine ma 0.951 0.718 0.874 0.0
297850394 536 regulator of chromosome condensation fam 0.971 0.75 0.806 0.0
30686578 538 regulator of chromosome condensation (RC 0.995 0.765 0.789 0.0
>gi|302142613|emb|CBI19816.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/411 (86%), Positives = 386/411 (93%), Gaps = 1/411 (0%)

Query: 2   AELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFV 61
           A +E+E  VEE+   EKGGELL CGSTCWDA+GRRKG L+GNLVSPTRLRPLVGVDIRFV
Sbjct: 3   AAVESENKVEEKK-SEKGGELLLCGSTCWDAIGRRKGTLEGNLVSPTRLRPLVGVDIRFV 61

Query: 62  AAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSH 121
           AAGC SCHCVA+DVEGRCYTWGRNERGQLGHGDK+QRDRPT VSELSKYKI +AG+GRSH
Sbjct: 62  AAGCASCHCVALDVEGRCYTWGRNERGQLGHGDKLQRDRPTFVSELSKYKIIRAGSGRSH 121

Query: 122 TVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEG 181
           +VVV+EDG SLAFGWNKHGQLGSGS++NE+E SPVRCLVSEV   ACGA+FTVWLSS EG
Sbjct: 122 SVVVSEDGQSLAFGWNKHGQLGSGSVKNEVELSPVRCLVSEVKTVACGAEFTVWLSSAEG 181

Query: 182 ASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHT 241
           ASIL AGLPQYGQLGHGTDNEYN+KDSSV+LAYE QPRP+AIA+L+GETIVKVACGTNHT
Sbjct: 182 ASILTAGLPQYGQLGHGTDNEYNSKDSSVRLAYEPQPRPKAIASLSGETIVKVACGTNHT 241

Query: 242 VAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTA 301
           VAVDS G+VYTWGFGGYGRLGHREQKDEWVPRRV+VFQR NVLPPEAVISAGSVNSSCTA
Sbjct: 242 VAVDSSGHVYTWGFGGYGRLGHREQKDEWVPRRVEVFQRQNVLPPEAVISAGSVNSSCTA 301

Query: 302 GGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGE 361
           GGGQLYMWGK+K  GDDWMYPKPLMDLSGW+L CMDSGNMHHFVGADSSCISWGHAQYGE
Sbjct: 302 GGGQLYMWGKIKITGDDWMYPKPLMDLSGWHLNCMDSGNMHHFVGADSSCISWGHAQYGE 361

Query: 362 LGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQV 412
           LGYGP GQKSSA+PKKVDILEGMHVI+VACG+G+S+V+VDRTNVG+RLDQ+
Sbjct: 362 LGYGPNGQKSSAVPKKVDILEGMHVITVACGFGNSMVVVDRTNVGDRLDQL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538862|ref|XP_002510496.1| Protein RCC2, putative [Ricinus communis] gi|223551197|gb|EEF52683.1| Protein RCC2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224082962|ref|XP_002306909.1| predicted protein [Populus trichocarpa] gi|222856358|gb|EEE93905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458061|ref|XP_002278592.1| PREDICTED: protein RCC2 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065999|ref|XP_002301995.1| predicted protein [Populus trichocarpa] gi|222843721|gb|EEE81268.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449460213|ref|XP_004147840.1| PREDICTED: protein RCC2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356509755|ref|XP_003523611.1| PREDICTED: protein RCC2-like [Glycine max] Back     alignment and taxonomy information
>gi|356518146|ref|XP_003527743.1| PREDICTED: protein RCC2-like [Glycine max] Back     alignment and taxonomy information
>gi|297850394|ref|XP_002893078.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297338920|gb|EFH69337.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30686578|ref|NP_173417.2| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] gi|332191788|gb|AEE29909.1| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2035423 538 AT1G19880 [Arabidopsis thalian 0.944 0.726 0.808 3.2e-184
UNIPROTKB|Q9P258522 RCC2 "Protein RCC2" [Homo sapi 0.891 0.706 0.399 1.6e-70
MGI|MGI:1919784520 Rcc2 "regulator of chromosome 0.913 0.726 0.393 2.6e-70
ZFIN|ZDB-GENE-040426-2213495 rcc2 "regulator of chromosome 0.920 0.769 0.374 4.1e-65
FB|FBgn0031769487 CG9135 [Drosophila melanogaste 0.910 0.774 0.366 1.4e-62
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.787 0.740 0.312 3.6e-34
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.611 0.052 0.323 6.6e-28
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.628 0.053 0.321 1.2e-28
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.628 0.053 0.321 1.2e-28
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.811 0.093 0.283 3.3e-27
TAIR|locus:2035423 AT1G19880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1787 (634.1 bits), Expect = 3.2e-184, P = 3.2e-184
 Identities = 321/397 (80%), Positives = 360/397 (90%)

Query:    22 LLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYT 81
             LLFCG+T WD +G+RKGA++GNLVSPTRLRPLVGV+IRFVA GC S HCVA+DVEGRCYT
Sbjct:    22 LLFCGATAWDIIGKRKGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRCYT 81

Query:    82 WGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQ 141
             WGRNE+GQLGHGD IQRDRPT+VS LSK+KI KA AGR+HTVVV++DG SL FGWNK+GQ
Sbjct:    82 WGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQ 141

Query:   142 LGSGSIRN-----EIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQL 195
             LG GS +N     E+E +P+ C+VS EVT  ACGADFTVWLSS EGASIL AGLPQYGQL
Sbjct:   142 LGLGSAKNGFVSVEVESTPLPCVVSDEVTNVACGADFTVWLSSTEGASILTAGLPQYGQL 201

Query:   196 GHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGF 255
             GHGTDNE+N KDSSV+LAYEAQPRP+AIA+LAGETIVKVACGTNHTVAVD  GYVYTWGF
Sbjct:   202 GHGTDNEFNMKDSSVRLAYEAQPRPKAIASLAGETIVKVACGTNHTVAVDKNGYVYTWGF 261

Query:   256 GGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN 315
             GGYGRLGHREQKDEW PRR+DVFQRNNVLPP A++SAGS NS+CTAGGGQLYMWGK+KNN
Sbjct:   262 GGYGRLGHREQKDEWAPRRIDVFQRNNVLPPNAILSAGSANSACTAGGGQLYMWGKIKNN 321

Query:   316 GDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMP 375
             GDDWMYPKP+MDLSGWNLR MDSG+MHHFVGADSSCISWGHAQYGELGYGP GQKSSA P
Sbjct:   322 GDDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADSSCISWGHAQYGELGYGPNGQKSSAAP 381

Query:   376 KKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQV 412
             KKVD+LEGMHV+ VACG+ HS+VIVDRT++ +RL+Q+
Sbjct:   382 KKVDMLEGMHVMGVACGFCHSMVIVDRTDIADRLEQL 418
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
UNIPROTKB|Q9P258 RCC2 "Protein RCC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919784 Rcc2 "regulator of chromosome condensation 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2213 rcc2 "regulator of chromosome condensation 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0031769 CG9135 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NYE2RCC2_DANRENo assigned EC number0.36380.95890.8020yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-25
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  107 bits (269), Expect = 2e-25
 Identities = 94/390 (24%), Positives = 142/390 (36%), Gaps = 57/390 (14%)

Query: 46  SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLG----------HGDK 95
            P             +   C   H + +D +G  Y+WG N+ G LG          + D 
Sbjct: 92  RPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDI 151

Query: 96  IQRD------RPTIV----SELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSG 145
           I  D       P  V    S  S  ++ K   G   +V++T DG   ++G  + G+LG G
Sbjct: 152 IDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG 211

Query: 146 ----SIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDN 201
               S +  I+ +P++     +   A GAD    ++      +   G  Q GQLG  T  
Sbjct: 212 SYKNSQKTSIQFTPLKVPKKAIVQLAAGADH--LIALTNEGKVYGWGSNQKGQLGRPTSE 269

Query: 202 EYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRL 261
                             P AI       I  VACG +H++A+D  G +Y WG   +G+L
Sbjct: 270 RLKLV--------VLVGDPFAIRN-----IKYVACGKDHSLALDEDGEIYAWGVNIFGQL 316

Query: 262 GHREQKDEWVPRRVDVFQRNNVLPPEAV----ISAGSVNSSCTAGGGQLYMWGK-----L 312
           G                + N       V    ISAG  +S      G LY +G+     L
Sbjct: 317 GA----GSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372

Query: 313 KNNGDDWMYPKPLMDLSGWNLRC-MDSGNMHHFVGADS-SCISWGHAQYGELGYGPYGQK 370
               +  +       LS       +  G  H+    D  S  SWG  ++G LG GP    
Sbjct: 373 GIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEAD 432

Query: 371 SSAMPKKV--DILEGMHVISVACGYGHSLV 398
               P  +   +L G ++I    G   S++
Sbjct: 433 VLV-PTLIRQPLLSGHNIILAGYGNQFSVI 461

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.84
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.35
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.32
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.0
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.87
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.84
KOG0315311 consensus G-protein beta subunit-like protein (con 94.74
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.25
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.9
KOG3669 705 consensus Uncharacterized conserved protein, conta 87.27
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 86.66
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 86.6
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.13
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 85.08
KOG4693392 consensus Uncharacterized conserved protein, conta 83.33
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-60  Score=406.38  Aligned_cols=387  Identities=71%  Similarity=1.218  Sum_probs=359.4

Q ss_pred             cCCccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCC
Q 015057           14 TGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHG   93 (414)
Q Consensus        14 ~~~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~   93 (414)
                      ..+...|++..+|.--+.+.|..+.....+...|.++..+.+++|+.|+.||...|+++|+-+|+.|.||.|..||||++
T Consensus        14 s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg   93 (443)
T KOG1427|consen   14 SSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG   93 (443)
T ss_pred             hhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc
Confidence            34456789999999999999998877667889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCee-eeccceEEEEeCCCe
Q 015057           94 DKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVR-CLVSEVTATACGADF  172 (414)
Q Consensus        94 ~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~-~~~~~i~~is~G~~~  172 (414)
                      +...+.+|+.|+.+...+|++-+||++|+++||++|.||+||+|++||||.+...+.....+.+ ...+.|+.|+||.++
T Consensus        94 D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~f  173 (443)
T KOG1427|consen   94 DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADF  173 (443)
T ss_pred             chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccce
Confidence            9999999999999999999999999999999999999999999999999999876655444444 445669999999999


Q ss_pred             eEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEE
Q 015057          173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYT  252 (414)
Q Consensus       173 ~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~  252 (414)
                      +++|. ..+ .|.++|..++||||++.+..++.++....+.|+.++.|.-+..+....|++++||.+|++|++++++||+
T Consensus       174 tv~l~-~~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVys  251 (443)
T KOG1427|consen  174 TVWLS-STE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYS  251 (443)
T ss_pred             EEEee-ccc-ceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEE
Confidence            99999 788 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCc
Q 015057          253 WGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWN  332 (414)
Q Consensus       253 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~  332 (414)
                      ||.+.||.||+.+..+...|+.++.|+.....+  ..+.+|+.+++++.+-|++|.||.+.+.++++.+|.++..+++++
T Consensus       252 WGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~--~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwn  329 (443)
T KOG1427|consen  252 WGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGP--PNAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWN  329 (443)
T ss_pred             eccccccccccccchhhHHHHHHHHhcCCCCCC--cceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCcc
Confidence            999999999999999999999999887755543  379999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCceEEEEeCCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCc
Q 015057          333 LRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTN  404 (414)
Q Consensus       333 i~~i~~g~~h~~~l~~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~  404 (414)
                      +..+.|+..|.++-.|..+.+||...+|.++-+...+.+...|..++.+.+.+|-+|++|..|+++|++.-.
T Consensus       330 l~~~~~~~~h~~v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t~  401 (443)
T KOG1427|consen  330 LRWMDSGSMHHFVGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRTD  401 (443)
T ss_pred             CCCcCccceeeeecccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcccc
Confidence            999999999999999999999999998888877776788889999999999999999999999999998754

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 8e-32
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 9e-32
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-31
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-31
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-31
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-22
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-10
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 3e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 7e-07
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 3e-06
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 8e-10
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 6e-06
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-04
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 58  IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
           +  ++AG  + H VA+       +WGR E GQLGHGD   R  PT +S L  ++I     
Sbjct: 6   VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 63
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
           G  HTV  ++ G  + ++GW   G+LG G+  +   P P++ L    +   ACG D    
Sbjct: 64  GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG-DSHCL 122
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
             ++EG  + + G  Q GQLG G     +T+DS V         P+ I A  G  I  VA
Sbjct: 123 AVTMEG-EVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKMVA 167
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
            G  HT AV   G +Y WG+G YG LG  ++ D  VP RV       +    ++++ G  
Sbjct: 168 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM----SMVACGWR 223
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
           ++   +  G LY +G  K     +GD  D + P  L  LS   +  +  G  H   + +D
Sbjct: 224 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSD 283
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
                WG  ++G++G G    + S  P +V   +   V+ V+CG+ H+L + +R NV
Sbjct: 284 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 338
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-81
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-64
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-61
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-58
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-74
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-72
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-26
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-69
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-64
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-37
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-63
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-61
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-45
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-37
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-52
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-47
3of7_A 473 Regulator of chromosome condensation; beta-propell 9e-15
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-25
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 5e-22
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  253 bits (649), Expect = 6e-81
 Identities = 105/369 (28%), Positives = 165/369 (44%), Gaps = 33/369 (8%)

Query: 46  SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS 105
                       +  ++AG  + H VA+       +WGR E GQLGHGD   R  PT +S
Sbjct: 6   MAADEVTAPPRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS 63

Query: 106 ELSKYKIKKAGAGRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVSE-V 163
            L  ++I     G  HTV  ++ G  + ++GW   G+LG G+  +   P P++ L    +
Sbjct: 64  ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 123

Query: 164 TATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAI 223
              ACG    + ++  EG  + + G  Q GQLG G   +                 P+ I
Sbjct: 124 KQIACGDSHCLAVTM-EG-EVQSWGRNQNGQLGLGDTEDSLV--------------PQKI 167

Query: 224 AALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNV 283
            A  G  I  VA G  HT AV   G +Y WG+G YG LG  ++ D  VP RV       +
Sbjct: 168 QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 227

Query: 284 LPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPLMDLSGWNLRCMD 337
               ++++ G  ++   +  G LY +G  K       + +D + P  L  LS   +  + 
Sbjct: 228 ----SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS 283

Query: 338 SGNMHHF-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHS 396
            G  H   + +D     WG  ++G++G G    + S  P +V   +   V+ V+CG+ H+
Sbjct: 284 GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHT 341

Query: 397 LVIVDRTNV 405
           L + +R NV
Sbjct: 342 LAVTERNNV 350
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.14
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.91
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.72
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.97
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 92.69
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 92.46
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 92.24
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 90.67
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 89.66
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 89.37
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 88.94
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 88.49
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 86.81
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 86.04
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 86.02
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 84.93
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 84.02
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 82.49
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 80.05
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.6e-71  Score=529.05  Aligned_cols=360  Identities=26%  Similarity=0.488  Sum_probs=317.7

Q ss_pred             ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015057           17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI   96 (414)
Q Consensus        17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~   96 (414)
                      ++||+||+||+|.+||||.+.   ......|.+++.+.+.++++|++|  ..|+++|+++|+||+||.|.+||||.++..
T Consensus        17 ~~~G~v~~wG~n~~GqLG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~   91 (389)
T 3kci_A           17 QGSGTIYGWGHNHRGQLGGIE---GAKVKVPTPCEALATLRPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTE   91 (389)
T ss_dssp             ----CEEEEEECTTSTTSSCS---CSEEEEEEECHHHHHTCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSC
T ss_pred             CCCCeEEEeeCCCCccCCCCc---CccccCCEecccccCCceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcC
Confidence            789999999999999999875   345678888888888899999999  899999999999999999999999999988


Q ss_pred             CCCCceeeccCCCC--cEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCee
Q 015057           97 QRDRPTIVSELSKY--KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFT  173 (414)
Q Consensus        97 ~~~~p~~v~~~~~~--~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~  173 (414)
                      ....|++++.+...  ++++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||.+|+
T Consensus        92 ~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs  171 (389)
T 3kci_A           92 SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS  171 (389)
T ss_dssp             CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred             CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeE
Confidence            88899999987765  457899999999999999999999999999999998777666666665543 699999999999


Q ss_pred             EEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccC--CceEEEeCCCCEE
Q 015057          174 VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVY  251 (414)
Q Consensus       174 ~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~--~~~~~lt~~G~vy  251 (414)
                      ++|+ ++| +||+||.|.+||||.+....              ...|..+..+.+.+|++|+||.  .|+++|+++|+||
T Consensus       172 ~alt-~~G-~v~~wG~n~~GqLG~~~~~~--------------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~  235 (389)
T 3kci_A          172 ACVT-AAG-DLYTWGKGRYGRLGHSDSED--------------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVW  235 (389)
T ss_dssp             EEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEE
T ss_pred             EEEe-CCC-eEEEeCCCCCCCcCCCCCcc--------------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEE
Confidence            9999 899 99999999999999987643              4467777778888999999995  8999999999999


Q ss_pred             EeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCC------CCCceeeeeec
Q 015057          252 TWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPL  325 (414)
Q Consensus       252 ~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~------~~~~~~~p~~~  325 (414)
                      +||.|.+||||.+.......|.++..+...    .+++|+||..|+++|+++|+||+||.|..      .......|.++
T Consensus       236 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v  311 (389)
T 3kci_A          236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGL----GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV  311 (389)
T ss_dssp             EEECCGGGTTSSSSCCCEEEEEECGGGTTS----CEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred             EEeCCCCCCCCCCCCCCccccEEecccCCC----cEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEe
Confidence            999999999999988888899999876653    35699999999999999999999999863      23456789999


Q ss_pred             ccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccC
Q 015057          326 MDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT  403 (414)
Q Consensus       326 ~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g  403 (414)
                      ..+.+.+|++|+||..|+++++ +|+||+||+|.+||||.++.  .....|++|+.+.+++|.+|+||.+||++|++++
T Consensus       312 ~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          312 QGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTT--NAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             GGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSC--CCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred             ccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCC--CCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence            9998889999999999999999 99999999999999999987  7788999999999999999999999999999764
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-29
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-12
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 7e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 4e-29
 Identities = 76/390 (19%), Positives = 136/390 (34%), Gaps = 16/390 (4%)

Query: 20  GELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRC 79
           G +L  G      +G       G  V   +   LV +    V A     H V +   G+ 
Sbjct: 15  GLVLTLGQGDVGQLG------LGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 68

Query: 80  YTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKH 139
           Y++G N+ G LG    ++           + K+ +  AG SHT  +T+DG    +G  + 
Sbjct: 69  YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 128

Query: 140 GQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGT 199
                G +    +      +  +V      +     +       +   G  + GQLG   
Sbjct: 129 NNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP 188

Query: 200 DNEYNTKDSSV--KLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGG 257
           +   N        +L        ++  +          CG   T A+  +G+VY +G   
Sbjct: 189 ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSN 248

Query: 258 YGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMW-----GKL 312
           Y +LG    +  ++P+ +  F+ +         S G  ++ C    G+ Y       G+L
Sbjct: 249 YHQLGTPGTESCFIPQNLTSFKNSTK--SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306

Query: 313 KNNGDDWMYPKPLMDLSGWNLRCMDSGNMH-HFVGADSSCISWGHAQYGELGYGPYGQKS 371
                      P +      +  +  G    + V  D    +WG     +LG G      
Sbjct: 307 GLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW 366

Query: 372 SAMPKKVDILEGMHVISVACGYGHSLVIVD 401
           S +      LE   V+SV+ G  H++++V 
Sbjct: 367 SPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.52
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.86
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 82.83
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-60  Score=454.00  Aligned_cols=372  Identities=22%  Similarity=0.344  Sum_probs=298.2

Q ss_pred             CccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCC
Q 015057           16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK   95 (414)
Q Consensus        16 ~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~   95 (414)
                      .++||+||+||.|.+||||.+...  .....|.+++.+.  +|++|++|  ..|++||+++|+||+||.|.+||||.+..
T Consensus        11 ~~~~G~vy~wG~n~~GqLG~g~~~--~~~~~P~~v~~~~--~i~~ia~G--~~h~~al~~~G~vy~wG~n~~GQLG~g~~   84 (401)
T d1a12a_          11 STEPGLVLTLGQGDVGQLGLGENV--MERKKPALVSIPE--DVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTS   84 (401)
T ss_dssp             CCCCBEEEEEEECTTSTTCSCTTC--CEEEEEEEECCSS--CEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCC
T ss_pred             ECCCCEEEEEeCCCCCCCCCCCCC--ceeccCEEeCCCC--CeEEEEeC--CCEEEEEeCCCEEEEEeCCCCCCCCcccc
Confidence            478999999999999999998622  3477888887765  69999999  89999999999999999999999999988


Q ss_pred             CCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCC--cccCcCeeeeccceEEEEeCCCee
Q 015057           96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN--EIEPSPVRCLVSEVTATACGADFT  173 (414)
Q Consensus        96 ~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~--~~~~~~~~~~~~~i~~is~G~~~~  173 (414)
                      .....|.+.......+|++|+||..|+++++++|+||+||.+...+.+......  ...+........+|+.|+||..|+
T Consensus        85 ~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~  164 (401)
T d1a12a_          85 VEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHL  164 (401)
T ss_dssp             STTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEE
T ss_pred             cccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccce
Confidence            777666666666677899999999999999999999999987666644332222  222222222234699999999999


Q ss_pred             EEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeec-----ccCCCcEEEEEccCCceEEEeCCC
Q 015057          174 VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA-----ALAGETIVKVACGTNHTVAVDSKG  248 (414)
Q Consensus       174 ~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~I~~g~~~~~~lt~~G  248 (414)
                      ++++ .+| ++|+||.|.+||||.............   .......|..+.     .....+|++|+||..|+++|+.+|
T Consensus       165 ~~~~-~~g-~~~~~G~n~~gqlg~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g  239 (401)
T d1a12a_         165 VMLT-ADG-DLYTLGCGEQGQLGRVPELFANRGGRQ---GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEG  239 (401)
T ss_dssp             EEEE-TTS-CEEEEECCTTSTTCSCGGGTSSSCGGG---GHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTC
T ss_pred             eeee-cCC-cccccccCCccccCCCCccccccCCcc---ccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCC
Confidence            9999 888 999999999999998765432221110   011111222221     233457999999999999999999


Q ss_pred             CEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCC-------CCCceee
Q 015057          249 YVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN-------NGDDWMY  321 (414)
Q Consensus       249 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~-------~~~~~~~  321 (414)
                      +||.||.|.++++|.........+..+..+...  ...++.+++|..++++++++|+||+||.+..       ......+
T Consensus       240 ~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~--~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~  317 (401)
T d1a12a_         240 HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS--TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI  317 (401)
T ss_dssp             CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT--TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEE
T ss_pred             eEeeecccceecccccccccceecccccccccc--ceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccC
Confidence            999999999999999888777777777655443  2356799999999999999999999999763       2344667


Q ss_pred             eeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeec--cCCCceEEEEEecCCceEE
Q 015057          322 PKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVD--ILEGMHVISVACGYGHSLV  398 (414)
Q Consensus       322 p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~--~~~~~~v~~v~~G~~~t~~  398 (414)
                      |..+..+.  +|++|+||.+|++|++ ||+||+||+|.+||||.|+.  .....|+++.  .+.+.+|++|+||.+||++
T Consensus       318 P~~i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~--~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~  393 (401)
T d1a12a_         318 PTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD--EDAWSPVEMMGKQLENRVVLSVSSGGQHTVL  393 (401)
T ss_dssp             EEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--SCEEEEEECCSTTTTTEEEEEEEECSSEEEE
T ss_pred             CEEcCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCC--CCEecCEEeeccCCCCCEEEEEEEccceEEE
Confidence            88887765  6999999999999999 99999999999999999987  6667787775  3567799999999999999


Q ss_pred             EEccCc
Q 015057          399 IVDRTN  404 (414)
Q Consensus       399 l~~~g~  404 (414)
                      |++|++
T Consensus       394 l~~d~~  399 (401)
T d1a12a_         394 LVKDKE  399 (401)
T ss_dssp             EEEECS
T ss_pred             EEECCc
Confidence            999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure