Citrus Sinensis ID: 015059

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Secondary Structure (PSIPRED)
cccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHcccccccccccHHHHHHHHHcHHHHHHHHHHHHcccccccccccHHccccccccccHHHHHHHHHHcccHHHHHHHHHccHHHHHHcccHHHHHHHHHHHcccHHHHHHcccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccEEEEEEEccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEccHHHcccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccHHHHHHHccHHHHHHHHHccccccHHHEccccHHHHHHHc
Coil and Loop (DISEMBL)
menlnmalvsstspklvlnytnfkhptrgitgprrssslalpfklstsrisasvragphqngqvgaggfasltssggqqtssvgvnpnlpmpppssnvgsplfwVGVGVGLSALFSFVASRLKQYAMQQALKGMMNqmntqnkpfgnaafpqgspfpfpnppasgpttpypaasqprftmdipatkveaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnfedvketssskdaqppkdsqngaafnynagspfggqsakkegrfLTVDTLEKLmedpqvqkmvypslpeemrnpasfklMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMmanpeialgfqspRVQAAIMECSqnpmniikyqndkevfsdfv
Flexible Loop (DISEMBL)
MENLNMALVSSTSPKLVLNYTNfkhptrgitgprrssslalPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnFEDVKEtssskdaqppkdsQNGAAFNYNAGspfggqsakkEGRFLTVDTLeklmedpqvQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNpmniikyqndkevfsdfv
Low Complexity Region (SEG)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLtssggqqtssvgvnpnlpmpppssnVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAfpqgspfpfpnppasgpttpypaasQPRFTMDIPATKVEAATATDvegkkevkgetevkeepkkYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Disordered region (IsUnstruct)
***************LVLNYTNF*****************************************************************************PLFWVGVGVGLSALFSFVASRLKQYAMQ*********************************************************************************************************************************************************************************************************C***EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKY***********
Disordered Region (DISOPRED)
*****************************************************************************************************LFWVGVGVGLSALFSFVASRL****************************************************************************************************************************************************************EKLMEDPQV**************************************************************************EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Disordered Region (DISEMBL)
**********STSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASL*********SVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEA*******************EEPKKYAFVDVSPEETLQKSSFDN******************SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Disordered Region (DISPRO)
****N**LVSSTSPKL**************************************************G******S*****TSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQM*****PFGNAAFPQGSPFPF*******************************************************Y**V*VSPE*****************************************************FLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q8GT66	436	Protein TIC 40, chloropla	N/A	no	0.966	0.917	0.577	1e-121
Q9FMD5	447	Protein TIC 40, chloropla	yes	no	0.995	0.921	0.522	3e-93

>sp|Q8GT66|TIC40_PEA Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/435 (57%), Positives = 314/435 (72%), Gaps = 35/435 (8%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVFSDF 413
           +I+KYQNDKEV   F
Sbjct: 408 SIVKYQNDKEVMDVF 422

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.
Pisum sativum (taxid: 3888)

>sp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1

 Score =  342 bits (877), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 228/436 (52%), Positives = 290/436 (66%), Gaps = 24/436 (5%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
           ALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+ FP GSPFPFP PP + P +    
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 173 ASQPRF--TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 220
           +       T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 221 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 277
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 278 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 337
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 397
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 398 MNIIKYQNDKEVFSDF 413
           MNI+KYQNDKEV   F
Sbjct: 420 MNIMKYQNDKEVMDVF 435

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
356539740	429	PREDICTED: uncharacterized protein LOC10	0.961	0.927	0.570	1e-121
356569945	432	PREDICTED: uncharacterized protein LOC10	0.968	0.928	0.566	1e-121
5531416	436	translocon Tic40 [Pisum sativum]	0.966	0.917	0.579	1e-120
75150408	436	RecName: Full=Protein TIC 40, chloroplas	0.966	0.917	0.577	1e-120
255582251	465	conserved hypothetical protein [Ricinus	0.973	0.866	0.559	1e-119
224079472	429	predicted protein [Populus trichocarpa]	0.975	0.941	0.593	1e-117
94449066	460	plastid Tic40 [Ricinus communis]	0.961	0.865	0.554	1e-116
449462371	419	PREDICTED: protein TIC 40, chloroplastic	0.739	0.730	0.605	1e-100
225460309	436	PREDICTED: protein TIC 40, chloroplastic	0.956	0.908	0.551	2e-99
15237382	447	hydroxyproline-rich glycoprotein family	0.995	0.921	0.522	2e-91

>gi|356539740|ref|XP_003538352.1| PREDICTED: uncharacterized protein LOC100781154 [Glycine max]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/431 (57%), Positives = 299/431 (69%), Gaps = 33/431 (7%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P L+L +     P R +   +  S   +       R   S  +  H 
Sbjct: 1   MEKLNLALVSSPKP-LMLGHV----PARDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHH 55

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+T+S+GV P L  P PSS +GSPLFW+GVGVGLSALF
Sbjct: 56  NPKSVQEKLIVKHFASISSSNTQETTSIGVKPQLS-PSPSSTIGSPLFWIGVGVGLSALF 114

Query: 116 SFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS- 174
           S VASRLK+YAMQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+ 
Sbjct: 115 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 174

Query: 175 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 223
                      Q   T+D+PA KVEAA  T+V      K E E+K EPKK AFVDVSPEE
Sbjct: 175 QSRAPSASSASQSTITVDLPAAKVEAAPTTNV------KDEVELKNEPKKIAFVDVSPEE 228

Query: 224 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 282
           T+++S F++F+D  E+SS K+A  P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 229 TVRESPFESFKD-DESSSVKEAWVPDEVSQNGAPSNLGFGDFPGSQSTKKSA--LSVDAL 285

Query: 283 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 342
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 286 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDNRMMDT 345

Query: 343 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 402
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 346 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 405

Query: 403 YQNDKEVFSDF 413
           YQNDKEV   F
Sbjct: 406 YQNDKEVMDVF 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569945|ref|XP_003553154.1| PREDICTED: uncharacterized protein LOC100790904 [Glycine max]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/431 (56%), Positives = 297/431 (68%), Gaps = 30/431 (6%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P ++ +       +R +   +  S   +       R   S  +  H+
Sbjct: 1   MEKLNLALVSSPKPLMLGHVPAIDATSRDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHR 60

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+ +S GVNP L    PSS +GSPLFW+GVGVGLSALF
Sbjct: 61  NPKSVQEKLIVKHFASISSSNTQEATSTGVNPQLS---PSSTIGSPLFWIGVGVGLSALF 117

Query: 116 SFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPAAS- 174
           S VASRLK+YAMQQA K MM QMN+QN  FGNAAF  GSPFPFP P A+GPT P  +A+ 
Sbjct: 118 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 177

Query: 175 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 223
                      Q   T+DIPA KVE A  T+V      K E EVK EPKK AFVDVSPEE
Sbjct: 178 QSRAPSASSASQSTITVDIPAAKVEVAPTTNV------KDEVEVKNEPKKIAFVDVSPEE 231

Query: 224 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 282
           T+Q+S F++F+D  E+SS K+A+ P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 232 TVQESPFESFKD-DESSSVKEARVPDEVSQNGAPSNQGFGDFPGSQSTKKS--VLSVDAL 288

Query: 283 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 342
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 289 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDSRMMDT 348

Query: 343 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 402
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 349 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 408

Query: 403 YQNDKEVFSDF 413
           YQNDKEV   F
Sbjct: 409 YQNDKEVMDVF 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5531416|emb|CAB50925.1| translocon Tic40 [Pisum sativum]

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/435 (57%), Positives = 313/435 (71%), Gaps = 35/435 (8%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+        RR S     F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKN-----VFSRRKSFTFGTFRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHSFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G   G  S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPGSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVFSDF 413
           +I+KYQNDKEV   F
Sbjct: 408 SIVKYQNDKEVMDVF 422

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75150408|sp|Q8GT66.1|TIC40_PEA RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=PsTIC40; Flags: Precursor gi|26000725|gb|AAN75219.1| chloroplast protein translocon component Tic40 precursor [Pisum sativum]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 251/435 (57%), Positives = 314/435 (72%), Gaps = 35/435 (8%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTP--- 169
           ALFS VASR+K+YAMQQA K MM QMNTQN PF + AF  G PFPFP P ASGP TP   
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 170 ---------YPAASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 219
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 220 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 278
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 279 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 338
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 339 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 398
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 399 NIIKYQNDKEVFSDF 413
           +I+KYQNDKEV   F
Sbjct: 408 SIVKYQNDKEVMDVF 422

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582251|ref|XP_002531917.1| conserved hypothetical protein [Ricinus communis] gi|223528427|gb|EEF30461.1| conserved hypothetical protein [Ricinus communis]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/463 (55%), Positives = 313/463 (67%), Gaps = 60/463 (12%)

Query: 1   MENLNMALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS---- 46
           MENLNM L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L     
Sbjct: 1   MENLNMGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKI 58

Query: 47  ---TSRISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSN 97
              +SR S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+
Sbjct: 59  VTRSSRFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSS 116

Query: 98  VGSP-LFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPF 156
                LFW+GVGVGLSA+FS VA+R+K YAMQQA K MMNQMNTQN  F N AF  GS F
Sbjct: 117 QFGSPLFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAF 176

Query: 157 PFPNPPASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAAT 191
           PFP PPAS P +  P+P +S                       QP  T+D+ ATKVEAA+
Sbjct: 177 PFPTPPASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAAS 236

Query: 192 ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKD 250
            TD       K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+ 
Sbjct: 237 VTDA------KDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEV 290

Query: 251 SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK 310
            QNGAA N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK
Sbjct: 291 LQNGAASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFK 350

Query: 311 LMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITK 370
            MLQNP+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K
Sbjct: 351 WMLQNPQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISK 410

Query: 371 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413
           +MANPEIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEV   F
Sbjct: 411 IMANPEIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVF 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079472|ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|222848840|gb|EEE86387.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 253/426 (59%), Positives = 314/426 (73%), Gaps = 22/426 (5%)

Query: 1   MENLNMALVSSTSPKLVLNY-TNFKHPTRGITGPRRSSSL---ALPFKLSTSRISA---- 52
           MEN  +AL+SS+SPKLV+ Y T+ K+PT     P+ S S    +LPF L  S+ +     
Sbjct: 1   MENPRLALLSSSSPKLVMGYPTSLKNPTT----PKFSISTTRPSLPFSLRISKTAPHASI 56

Query: 53  -SVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGL 111
            S+ A  + +G++G+  FAS++SS G+QT+SVGVNP    PP  S +GSPLFWVGVGVGL
Sbjct: 57  FSISALANSHGKLGSEYFASISSSSGKQTASVGVNPQPVSPP-PSQIGSPLFWVGVGVGL 115

Query: 112 SALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTT-PY 170
           SA+FS+VA+R+K YAMQQA K +  QMNTQN  F N AF    PFPF  PPAS P+T P 
Sbjct: 116 SAIFSWVATRVKNYAMQQAFKSLTEQMNTQNNQF-NPAFSARPPFPFSPPPASHPSTSPS 174

Query: 171 PAASQPRFTMDIPATKVEAATATDVEGKKEVK--GETEVKEEPKKYAFVDVSPEETLQKS 228
           PAASQP  T+DIPATKVEAA  TDV  +KE     E ++KEE KKYAFVD+SPEET   +
Sbjct: 175 PAASQPAITVDIPATKVEAAPTTDVGKEKETDFLEERKIKEETKKYAFVDISPEETSLNT 234

Query: 229 SFDNFEDVKETSSSKDAQPPKDS-QNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLME 287
            F + ED  ETSSSKD +  K   QNGAAF    G+  G QS +    FL+V+ LEK+ME
Sbjct: 235 PFSSVEDDNETSSSKDVEFAKKVFQNGAAFKQGPGAAEGSQSTRP---FLSVEALEKMME 291

Query: 288 DPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFD 347
           DP +QKMVYP LPEEMRNP +FK MLQNP+YR+QL++ML+ M  SG++D +++DSLK+FD
Sbjct: 292 DPTMQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEDMLNNMGGSGKWDSQMMDSLKDFD 351

Query: 348 LNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDK 407
           LNSAEVKQQF+QIGLTPEEVI+K+MANP++A+ FQ+PRVQ AIMECSQNP+NI KYQNDK
Sbjct: 352 LNSAEVKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQQAIMECSQNPINITKYQNDK 411

Query: 408 EVFSDF 413
           EV   F
Sbjct: 412 EVMDVF 417

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94449066|gb|ABF19057.1| plastid Tic40 [Ricinus communis]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/458 (55%), Positives = 308/458 (67%), Gaps = 60/458 (13%)

Query: 6   MALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS-------TS 48
           M L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L        +S
Sbjct: 1   MGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKIVTRSS 58

Query: 49  RISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSP- 101
           R S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+     
Sbjct: 59  RFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSSQFGSP 116

Query: 102 LFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNP 161
           LFW+GVGVGLSA+FS VA+R+K YAMQQA K MMNQMNTQN  F N AF  GS FPFP P
Sbjct: 117 LFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTP 176

Query: 162 PASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAATATDVE 196
           PAS P +  P+P +S                       QP  T+D+ ATKVEAA+ TD  
Sbjct: 177 PASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAASVTDA- 235

Query: 197 GKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGA 255
                K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+  QNGA
Sbjct: 236 -----KDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEVLQNGA 290

Query: 256 AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQN 315
           A N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK MLQN
Sbjct: 291 ASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQN 350

Query: 316 PEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANP 375
           P+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANP
Sbjct: 351 PQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 410

Query: 376 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413
           EIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEV   F
Sbjct: 411 EIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVF 448

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462371|ref|XP_004148914.1| PREDICTED: protein TIC 40, chloroplastic-like [Cucumis sativus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/317 (60%), Positives = 235/317 (74%), Gaps = 11/317 (3%)

Query: 98  VGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFP 157
           VGSPLFWVGVGVGLSALF++VAS LK+YAMQQA K MM+QMN+QN P  N     GSPFP
Sbjct: 99  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP 158

Query: 158 FPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFV 217
            P   A+G TT  P+ S+P  ++D+ ATKVE    T+V+ + E         E KK+AFV
Sbjct: 159 IPPTFATG-TTISPSVSEPAVSIDVTATKVEEEPVTNVKSRTE-------NMEAKKFAFV 210

Query: 218 DVSPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRF 276
           DVSPEET QKS F   ED  +   SK AQP ++  QNGAA         G Q ++K G  
Sbjct: 211 DVSPEETDQKSPFK--EDATDADVSKSAQPTQELPQNGAASKQAYNGSDGSQFSRKPGSV 268

Query: 277 LTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFD 336
           L+V+ +EK+MEDP VQKM+YP LPEEMRNP +FK M+QNP YR+QL+EML+ M  S ++D
Sbjct: 269 LSVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWD 328

Query: 337 GRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQN 396
           GR++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANPEIA+ FQ+PRVQAAIM+CSQN
Sbjct: 329 GRLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQN 388

Query: 397 PMNIIKYQNDKEVFSDF 413
           P++I KYQNDKEV   F
Sbjct: 389 PLSITKYQNDKEVMDVF 405

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460309|ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera] gi|296089465|emb|CBI39284.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 239/433 (55%), Positives = 289/433 (66%), Gaps = 37/433 (8%)

Query: 5   NMALVSSTSPKLVLNYTNFKHPT--RGITGPRRSSSLALPFK-----LSTSRISASVRAG 57
           ++ LVSS  PKLVL ++    P+  R I+    S SL L F+     ++ S+  AS R  
Sbjct: 3   SLTLVSS--PKLVLGHS----PSNPRHISCAHSSFSLPLLFRKPRKFIAASQSGASPRTP 56

Query: 58  PHQ-NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFS 116
            H    ++G   FAS  SS  Q TSSVGVNP    PPPSSN+GSPLFW+GVGVGLSALFS
Sbjct: 57  RHVVETKLGTECFAS-ISSSSQGTSSVGVNPQFSPPPPSSNIGSPLFWIGVGVGLSALFS 115

Query: 117 FVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQG--------------SPFPFPNPP 162
           +VAS LK+YAMQQA K +M QM++QN  F    F  G              +    P   
Sbjct: 116 WVASNLKKYAMQQAFKTLMGQMDSQNNQFNTTTFSPGSPFPFPMPPPSGPSTSHSGPTTS 175

Query: 163 ASGPTT-PYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSP 221
            SGPTT P   A+Q   T+D+PATKVE   ATDV      K + E K E  KYAFVDVSP
Sbjct: 176 PSGPTTSPSTVAAQSMVTVDVPATKVETPPATDV------KDDIEKKNEQNKYAFVDVSP 229

Query: 222 EETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVD 280
           EETLQ+S F+NFE+  ETSSSKDAQ     SQNG       G     QS +    FL+VD
Sbjct: 230 EETLQESPFENFEESTETSSSKDAQFSAGVSQNGTPPRPGMGVSEDSQSTRNANPFLSVD 289

Query: 281 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVL 340
            LEK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QLQ+ML+ M    E+D R++
Sbjct: 290 ALEKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLQDMLNNMGGGAEWDNRMM 349

Query: 341 DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNI 400
           D+LKNFDL+S EVKQQF+QIGLTPEEVI+K+MANP++AL FQ+PR+QAAIM+CSQNP++I
Sbjct: 350 DNLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPDVALAFQNPRIQAAIMDCSQNPLSI 409

Query: 401 IKYQNDKEVFSDF 413
            KYQNDKEV   F
Sbjct: 410 AKYQNDKEVMDVF 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237382|ref|NP_197165.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|75309208|sp|Q9FMD5.1|TIC40_ARATH RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Protein PIGMENT DEFECTIVE EMBRYO 120; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=AtTIC40; Flags: Precursor gi|16226313|gb|AAL16131.1|AF428299_1 AT5g16620/MTG13_6 [Arabidopsis thaliana] gi|10176971|dbj|BAB10189.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|20260222|gb|AAM13009.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|30387547|gb|AAP31939.1| At5g16620 [Arabidopsis thaliana] gi|332004935|gb|AED92318.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 228/436 (52%), Positives = 290/436 (66%), Gaps = 24/436 (5%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
           ALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+ FP GSPFPFP PP + P +    
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 173 ASQPRF--TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 220
           +       T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 221 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 277
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 278 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 337
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 397
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 398 MNIIKYQNDKEVFSDF 413
           MNI+KYQNDKEV   F
Sbjct: 420 MNIMKYQNDKEVMDVF 435

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
TAIR|locus:2174155	447	TIC40 "translocon at the inner	0.763	0.706	0.519	1.6e-79

TAIR|locus:2174155 TIC40 "translocon at the inner envelope membrane of chloroplasts 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 172/331 (51%), Positives = 212/331 (64%)

Query:    98 VGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAXXXXXXXX 157
             +GSPLFW+GVGVGLSALFS+V S LK+YAMQ A+K MMNQMNTQN  F N+         
Sbjct:   105 IGSPLFWIGVGVGLSALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFP 164

Query:   158 XXX--XXXXXXXXXXXXXXQPRFTMDIPATKVEAATAT----------DXXXXXXXXXXX 205
                                    T+D+ ATKVE   +T          +           
Sbjct:   165 FPFPPQTSPASSPFQSQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEAS 224

Query:   206 XXXXXXXXYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAG 262
                     YAF D+SPEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A 
Sbjct:   225 KEKKEEKNYAFEDISPEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATAS 284

Query:   263 SPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQL 322
               F      K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QL
Sbjct:   285 EVFQSLGGGKGGPGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQL 344

Query:   323 QEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQ 382
             Q+ML+ M  SGE+D R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ
Sbjct:   345 QDMLNNMSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQ 404

Query:   383 SPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413
             +PRVQAA+MECS+NPMNI+KYQNDKEV   F
Sbjct:   405 NPRVQAALMECSENPMNIMKYQNDKEVMDVF 435

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0031897 "Tic complex" evidence=TAS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMD5	TIC40_ARATH	No assigned EC number	0.5229	0.9951	0.9217	yes	no
Q8GT66	TIC40_PEA	No assigned EC number	0.5770	0.9661	0.9174	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	414
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	4e-11

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 277 LTVDTLEKLMED-PQVQKMVYPSLPEE--MRNPASFKLMLQNPEYRKQLQEMLDGMCESG 333
           LT + LE L+E  PQVQ+ + P LPE   MRNP   + ML++P++++ L  +   +  SG
Sbjct: 7   LTPENLEPLLESPPQVQERLLPHLPEGDLMRNPEDLREMLRSPQFKQALASLSQAL-RSG 65

Query: 334 EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKM 371
                    L    LN  EV   F   G   E  +  +
Sbjct: 66  GLP----SLLSQLGLNPEEV---FAANGGDVEAFLEAL 96

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	100.0
smart00727	41	STI1 Heat shock chaperonin-binding motif.	98.17
KOG3037	330	consensus Cell membrane glycoprotein [General func	96.18
smart00727	41	STI1 Heat shock chaperonin-binding motif.	95.58
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	93.22
PRK01844	72	hypothetical protein; Provisional	92.67
PRK00523	72	hypothetical protein; Provisional	92.6
COG3763	71	Uncharacterized protein conserved in bacteria [Fun	90.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	89.82
PF03672	64	UPF0154: Uncharacterised protein family (UPF0154);	87.52
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	84.56

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-41  Score=333.20  Aligned_cols=310  Identities=25%  Similarity=0.254  Sum_probs=223.0

Q ss_pred             CCccccceeeeecCCCccccccccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015059           62 GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKGMMNQMNTQ  141 (414)
Q Consensus        62 ~~~~~~~fas~sss~~~~~~s~g~~p~~~~pp~~s~iGsPl~WiGvGVgLsalfs~V~~~VK~yaMQqamKsMM~Qmg~~  141 (414)
                      .+-+++.|+++++++.-   ++-...+++++|-.+.++.++||++.+|++..+++.|-.-.++|.+++=       +.++
T Consensus        51 ~~e~~k~e~~~~~~~ee---~~~~~e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e-------~k~~  120 (377)
T KOG1308|consen   51 SEENTKAEASISKSVEE---SLKAPEVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQAND-------KKVQ  120 (377)
T ss_pred             ccccccccCCccccccc---ccccCCCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHH-------HHHH
Confidence            66789999999887443   7777777775555568999999999999999999999999999998873       3343


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccccccccccccCcccccc---CCccccccc
Q 015059          142 NKPFGNAAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKE---EPKKYAFVD  218 (414)
Q Consensus       142 ~~~fG~~pf~~gsPFpfp~Pp~~gp~~~~~~as~~~~tvD~~At~v~a~~~t~~~~~~e~~~~~e~~~---e~Kk~AFvD  218 (414)
                      +-.|-+.++       |     ...-..++    .+++...++.--.+--.+.         -.+.++   +-+.++|-+
T Consensus       121 A~eAln~G~-------~-----~~ai~~~t----~ai~lnp~~a~l~~kr~sv---------~lkl~kp~~airD~d~A~  175 (377)
T KOG1308|consen  121 ASEALNDGE-------F-----DTAIELFT----SAIELNPPLAILYAKRASV---------FLKLKKPNAAIRDCDFAI  175 (377)
T ss_pred             HHHHhcCcc-------h-----hhhhcccc----cccccCCchhhhcccccce---------eeeccCCchhhhhhhhhh
Confidence            333333333       0     00000000    1111111111111100010         112333   336788888


Q ss_pred             CCchhhhhcccccccccccccCCCCCCCCC-CCCCCCCCCCCCCCCCC--CCCCccccCccccHHHHHHhhcChhhhhhh
Q 015059          219 VSPEETLQKSSFDNFEDVKETSSSKDAQPP-KDSQNGAAFNYNAGSPF--GGQSAKKEGRFLTVDTLEKLMEDPQVQKMV  295 (414)
Q Consensus       219 Vspee~~~k~~~~s~~d~~~~ss~k~~~~~-~~~~~g~~~~~g~g~~~--~~~~~~~~~~~~~v~~~e~M~~dP~~Qkm~  295 (414)
                      ....++-+..+|......-.+...+.+.-- .+.+++..-..++-...  -..-....++...+...++++.++.+|+++
T Consensus       176 ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r  255 (377)
T KOG1308|consen  176 EINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVR  255 (377)
T ss_pred             ccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccc
Confidence            888887777777766555444444222211 11111111100000000  001123446668899999999999999999


Q ss_pred             ccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHHHHHHcCCCcHHHHHHhhCCH
Q 015059          296 YPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANP  375 (414)
Q Consensus       296 ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~qF~q~GmtP~e~~skIm~DP  375 (414)
                      |+|+|++|||+++|+|+++|++||+++.+|...|+++..|+.+|.|.|++||+|++ +++||-|+|      |+|||+||
T Consensus       256 ~~r~~~e~~~~e~~k~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~-~~~~p~~~g------i~ki~~dp  328 (377)
T KOG1308|consen  256 YAREPEEMANPEEFKRMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSP-VKQQPNQIG------ISKILSDP  328 (377)
T ss_pred             cccchhhhcChhhhhhhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCc-cccCCCccc------HhhhcCch
Confidence            99999999999999999999999999999999999999999999999999999999 999999999      99999999


Q ss_pred             HHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccC
Q 015059          376 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF  413 (414)
Q Consensus       376 ELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~  413 (414)
                      ||++||||||||+|||||++||+||+|||||||||+||
T Consensus       329 ev~aAfqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i  366 (377)
T KOG1308|consen  329 EVAAAFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVI  366 (377)
T ss_pred             HHHHhhcChHHHhhhhhcccChHHHHHhccChHHHHHH
Confidence            99999999999999999999999999999999999998

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=98.17  E-value=1.7e-06  Score=60.83  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=38.1

Q ss_pred             CHHHHhhcCCHHHHHHHHHHhcChhhhhhhcc-ChhhhccC
Q 015059          374 NPEIALGFQSPRVQAAIMECSQNPMNIIKYQN-DKEVFSDF  413 (414)
Q Consensus       374 DPELlaAfQDPEVmaA~qDi~sNPaNisKYqn-nPKVmnl~  413 (414)
                      |||+...++||+|+.+++++++||..+.+|.. ||++++.|
T Consensus         1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence            79999999999999999999999999999999 99998865

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=96.18  E-value=0.013  Score=59.20  Aligned_cols=56  Identities=20%  Similarity=0.456  Sum_probs=48.1

Q ss_pred             cCccccHHHHHHhhcChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHh
Q 015059          273 EGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  328 (414)
Q Consensus       273 ~~~~~~v~~~e~M~~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~  328 (414)
                      -...|..|++..++.+|.+|+-++||||+---+.+-+.-++++|||||+|.-....
T Consensus       225 La~vL~~e~v~~vl~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~a  280 (330)
T KOG3037|consen  225 LATVLKPEAVAPVLANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQA  280 (330)
T ss_pred             hhhhcChHHHHHHhhCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHH
Confidence            34458899999999999999999999999877778888899999999999655443

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=95.58  E-value=0.0098  Score=41.76  Aligned_cols=37  Identities=30%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             HHHhhcChhhhhhhccCCCcccCChHHHHHHhh-ChHHHHHH
Q 015059          282 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-NPEYRKQL  322 (414)
Q Consensus       282 ~e~M~~dP~~Qkm~ypyLPe~MRNp~tfk~ml~-NP~yr~QL  322 (414)
                      +..+++||.+|.++=    +-++||+.+..|++ ||+++..+
T Consensus         4 ~~~~l~~P~~~~~l~----~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        4 MALRLQNPQVQSLLQ----DMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             HHHHHcCHHHHHHHH----HHHHCHHHHHHHHHhCHHhHhhC
Confidence            445667998888754    56779999999999 99998753

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=93.22  E-value=0.1  Score=55.23  Aligned_cols=71  Identities=27%  Similarity=0.404  Sum_probs=53.1

Q ss_pred             cCccccHHHHHHhhcCh-hhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcH
Q 015059          273 EGRFLTVDTLEKLMEDP-QVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSA  351 (414)
Q Consensus       273 ~~~~~~v~~~e~M~~dP-~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~sp  351 (414)
                      .++-..--.++.+.+|| -+|+|+-||.+      +.|.-+.+||.+..|                              
T Consensus       328 ~~~~~~~a~lq~i~~n~~~~~~l~s~~~~------~m~~~~s~~P~~a~~------------------------------  371 (493)
T KOG0010|consen  328 LGSPGMQAGLQMITENPSLLQQLLSPYIR------SMFQSASQNPLQAAQ------------------------------  371 (493)
T ss_pred             cCCcchhhhhhccccChhhhhhccchhhH------HHHhhhccCchhhhc------------------------------
Confidence            34445567789999999 45666666654      456678899988777                              


Q ss_pred             HHHHHHHHcCCCcHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcC
Q 015059          352 EVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQN  396 (414)
Q Consensus       352 ev~~qF~q~GmtP~e~~skIm~DPELlaAfQDPEVmaA~qDi~sN  396 (414)
                           |.           . |.+|+++.+|.+|++|+||.-|-+-
T Consensus       372 -----~~-----------~-mq~p~~~~~~~np~a~~ai~qiqq~  399 (493)
T KOG0010|consen  372 -----LR-----------Q-MQNPDVLRAMSNPRAMQAIRQIQQG  399 (493)
T ss_pred             -----cc-----------c-ccCchHhhhhcChHHHHHHHHHHHH
Confidence                 00           4 7799999999999999999987653

>PRK01844 hypothetical protein; Provisional

Probab=92.67  E-value=0.31  Score=40.26  Aligned_cols=42  Identities=29%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             chhhHHHHH---HHHHHHHHHHH--HHHHHHH------HHHHHHHHhhcCCCC
Q 015059          101 PLFWVGVGV---GLSALFSFVAS--RLKQYAM------QQALKGMMNQMNTQN  142 (414)
Q Consensus       101 Pl~WiGvGV---gLsalfs~V~~--~VK~yaM------QqamKsMM~Qmg~~~  142 (414)
                      -|+||+++|   .+|++.++..+  ++++|..      |.|++.||.|||--+
T Consensus         3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkP   55 (72)
T PRK01844          3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKP   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCc
Confidence            367776543   33444444333  3566666      889999999999433

>PRK00523 hypothetical protein; Provisional

Probab=92.60  E-value=0.32  Score=40.20  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             hhhHHHHHH---HHHHHHHHH--HHHHHHHH------HHHHHHHHhhcCCC
Q 015059          102 LFWVGVGVG---LSALFSFVA--SRLKQYAM------QQALKGMMNQMNTQ  141 (414)
Q Consensus       102 l~WiGvGVg---Lsalfs~V~--~~VK~yaM------QqamKsMM~Qmg~~  141 (414)
                      ++||+++|.   .|++.++..  .++++|..      |.|++.||.|||--
T Consensus         5 ~l~I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqK   55 (72)
T PRK00523          5 GLALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRK   55 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCC
Confidence            566665433   333444433  33666766      89999999999943

>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.87  E-value=0.57  Score=38.75  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=23.6

Q ss_pred             hhHHHHHHHHHHHHHHHH--HHHHHHH------HHHHHHHHhhcCCC
Q 015059          103 FWVGVGVGLSALFSFVAS--RLKQYAM------QQALKGMMNQMNTQ  141 (414)
Q Consensus       103 ~WiGvGVgLsalfs~V~~--~VK~yaM------QqamKsMM~Qmg~~  141 (414)
                      +||.+.+..|.+.++..+  ..|+|.+      ++|++.||.|||--
T Consensus         8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpine~~iR~M~~qmGqK   54 (71)
T COG3763           8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPINEEMIRMMMAQMGQK   54 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCC
Confidence            344444444444444433  2445555      89999999999943

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.82  E-value=0.32  Score=52.13  Aligned_cols=69  Identities=23%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             cCCCCcHHHHHHHH------HcCCCcHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccCC
Q 015059          345 NFDLNSAEVKQQFE------QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDFV  414 (414)
Q Consensus       345 ~~d~~spev~~qF~------q~GmtP~e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~e  414 (414)
                      ..|-++-|+-+.+.      +.-.+|+++....|.|||+.+.+|||-....+.++-+|| +..|+..||.|++.|+
T Consensus       454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~  528 (539)
T KOG0548|consen  454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIE  528 (539)
T ss_pred             hcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHH
Confidence            34555667766662      346799999999999999999999999999999999999 6669999999987653

>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised

Probab=87.52  E-value=1.6  Score=35.32  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHHHHH--HHHHHHHH------HHHHHHHHhhcCCCC
Q 015059          104 WVGVGVGLSALFSFVA--SRLKQYAM------QQALKGMMNQMNTQN  142 (414)
Q Consensus       104 WiGvGVgLsalfs~V~--~~VK~yaM------QqamKsMM~Qmg~~~  142 (414)
                      ||-|++.+|++.+|..  -++++|..      +.|++.||.|||--+
T Consensus         2 ~iilali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~kp   48 (64)
T PF03672_consen    2 LIILALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKP   48 (64)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCc
Confidence            4555555555555554  45667776      899999999999433

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=84.56  E-value=0.54  Score=50.03  Aligned_cols=25  Identities=36%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             cHHHHHHhhcChhhhhhhccCCCcccC
Q 015059          278 TVDTLEKLMEDPQVQKMVYPSLPEEMR  304 (414)
Q Consensus       278 ~v~~~e~M~~dP~~Qkm~ypyLPe~MR  304 (414)
                      .-|.+-.||+||-+|.|+=.  |+.||
T Consensus       155 npe~~~~~m~nP~vq~ll~N--pd~mr  179 (493)
T KOG0010|consen  155 NPEALRQMMENPIVQSLLNN--PDLMR  179 (493)
T ss_pred             CHHHHHHhhhChHHHHHhcC--hHHHH
Confidence            46888999999999998654  44444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
2lnm_A	62	Solution Structure Of The C-Terminal Np-Repeat Doma		1e-16

>pdb|2LNM|A Chain A, Solution Structure Of The C-Terminal Np-Repeat Domain Of Tic40, A Co- Chaperone During Protein Import Into Chloroplasts Length = 62

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 45/50 (90%)
Query: 364 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF 413
           PEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEV   F
Sbjct: 1   PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVF 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	1e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 7e-10
 Identities = 49/354 (13%), Positives = 99/354 (27%), Gaps = 130/354 (36%)

Query: 175 QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKK----YAFVDV---SPEETLQK 227
           +  F  +     V+    + +  K+E+     +                     EE +QK
Sbjct: 26  EDAFVDNFDCKDVQDMPKS-ILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 228 SSF------DNFEDVKETSSSKDAQPPKDSQNGAAFN------YNAGSPF---------- 265
             F       N++ +     ++  QP   S     +       YN    F          
Sbjct: 82  --FVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 266 ----------------------GG-----------QSAKKEGRF------LTV---DTLE 283
                                  G            S K + +       L +   ++ E
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 284 KLMEDPQVQKMVY------PSLPEEMRNP--------ASFKLMLQNPEYRKQLQEMLDGM 329
            ++E   +QK++Y       S  +   N         A  + +L++  Y   L  +L  +
Sbjct: 197 TVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV 253

Query: 330 CESGE---FDG--RVL---------DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMAN- 374
             +     F+   ++L         D L      +  +      + LTP+EV + ++   
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 375 --------PEIALGFQSPRVQAAIMECSQNPMNIIKY----QNDK--EVFSDFV 414
                   P   L   +PR  + I E  ++ +           DK   +    +
Sbjct: 311 LDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 55/403 (13%), Positives = 105/403 (26%), Gaps = 136/403 (33%)

Query: 16  LVLNY----TNFKHPTRGITGPRRSSSLAL--------PF-KLSTSRIS--ASVRAG--- 57
           L +NY    +  K   R  +   R               F K + SR+     +R     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 58  --PHQNGQV-GAGGF--ASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
             P +N  + G  G     +                             +FW+ +     
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------------KIFWLNLK---- 190

Query: 113 ALFSFVASRLKQYAMQQALKGMMNQMNTQNKPFGNAAFPQGSPFPFPNPPASGPTTPYPA 172
                           + +  M+ ++  Q  P             + +            
Sbjct: 191 -----------NCNSPETVLEMLQKLLYQIDP------------NWTSRSDHSSNIKLRI 227

Query: 173 ASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFV---DVSPEETLQKSS 229
                                    + E++    +K +P +   +   +V   +     +
Sbjct: 228 ----------------------HSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWN--A 261

Query: 230 FDNFEDVKE--TSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLME 287
           F+     K   T+        +  Q     +    +     S       LT D ++ L+ 
Sbjct: 262 FNL--SCKILLTT--------RFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLL 308

Query: 288 DPQVQKMVYPSLPEEMR--NP-------ASFKLMLQNPEYRKQLQ-EMLDGMCESGEFDG 337
             +        LP E+   NP        S +  L   +  K +  + L  + ES     
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES----- 361

Query: 338 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEV-ITKMMANPEIAL 379
               SL    L  AE ++ F+++ + P    I      P I L
Sbjct: 362 ----SLNV--LEPAEYRKMFDRLSVFPPSAHI------PTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 39/312 (12%), Positives = 92/312 (29%), Gaps = 92/312 (29%)

Query: 93  PPSSNVGSPLFWVGVGVGLSALFSFVASRLKQY------AMQQALKGMMNQMNTQN--KP 144
           P      +P     + + ++       +    +       +   ++  +N +      K 
Sbjct: 319 PREVLTTNPRR---LSI-IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 145 FGN-AAFPQGSPFPFPNPPASGPTTPYPAASQPRFTMDIPATKV-----EAATATDVEG- 197
           F   + FP  +                           IP T +          +DV   
Sbjct: 375 FDRLSVFPPSAH--------------------------IP-TILLSLIWFDVIKSDVMVV 407

Query: 198 KKEVKGETEVKEEPKKYAF----------VDVSPEETLQKSSFDNFEDVKETSSSKDAQP 247
             ++   + V+++PK+             V +  E  L +S  D++   K   S     P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 248 PKDSQNGAAFNYNAGSPFG--GQSAKKEGRFLTVDTLEKL------MEDPQVQKMVYPSL 299
             D      +++      G   ++ +   R         +      +E    QK+ + S 
Sbjct: 468 YLD---QYFYSH-----IGHHLKNIEHPERM---TLFRMVFLDFRFLE----QKIRHDST 512

Query: 300 PEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAE--VKQQF 357
                       + Q   Y+         +C++     R+++++ +F     E  +  ++
Sbjct: 513 AWNASGS-ILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 358 E---QIGLTPEE 366
               +I L  E+
Sbjct: 565 TDLLRIALMAED 576

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 356 QFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFS 411
           Q      TPEE   + M +PE+A   Q P +Q+ + +  QNP  + ++  + EVF 
Sbjct: 1   QPGTSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFK 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.58
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	99.58
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.23
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	96.16
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	96.04
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	94.87
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	92.79
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	91.91
1q1f_A	151	Neuroglobin; globin fold, heme protein, oxygen sto	85.93

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.58  E-value=4e-16  Score=122.79  Aligned_cols=53  Identities=32%  Similarity=0.520  Sum_probs=51.0

Q ss_pred             CCCcHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccC
Q 015059          361 GLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF  413 (414)
Q Consensus       361 GmtP~e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~  413 (414)
                      |-++++.+.++|+||||+++|+||+||+|+|||++||+++.||++||||+++|
T Consensus         6 ~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i   58 (71)
T 2llw_A            6 NETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKI   58 (71)
T ss_dssp             CSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHH
T ss_pred             CCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999876

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=99.58  E-value=9.9e-16  Score=116.24  Aligned_cols=50  Identities=72%  Similarity=1.206  Sum_probs=48.4

Q ss_pred             cHHHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhhhccChhhhccC
Q 015059          364 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVFSDF  413 (414)
Q Consensus       364 P~e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisKYqnnPKVmnl~  413 (414)
                      |+++++||++|||++++|+||+|++|||||.+||+++.||++||+|+++|
T Consensus         1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~   50 (62)
T 2lnm_A            1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVF   50 (62)
T ss_dssp             CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHH
Confidence            68899999999999999999999999999999999999999999999876

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.23  E-value=3.2e-13  Score=105.18  Aligned_cols=48  Identities=21%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             HHHHHhhCCHHHHhhcCCHHHHHHHHHHhcChhhhhh-hccChhhhccC
Q 015059          366 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVFSDF  413 (414)
Q Consensus       366 e~~skIm~DPELlaAfQDPEVmaA~qDi~sNPaNisK-YqnnPKVmnl~  413 (414)
                      +++.||++|||++++|+||||+++|+||.+||+||.+ |.+||+|+++|
T Consensus        14 ~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l   62 (71)
T 2llv_A           14 NLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIM   62 (71)
T ss_dssp             SCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHH
Confidence            3678999999999999999999999999999999999 99999999886

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=96.16  E-value=0.0011  Score=58.62  Aligned_cols=54  Identities=20%  Similarity=0.420  Sum_probs=46.6

Q ss_pred             ccccHHHHHHhhcChhhhhhhccCCCcccC---ChHHHHHHhhChHHHHHHH---HHHHh
Q 015059          275 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQ---EMLDG  328 (414)
Q Consensus       275 ~~~~v~~~e~M~~dP~~Qkm~ypyLPe~MR---Np~tfk~ml~NP~yr~QLe---~ml~~  328 (414)
                      ..|+.|.|..+++||++++-+++|||+.-+   +++-++-.|+.||||+.|.   ..|..
T Consensus        38 dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~AL~s   97 (155)
T 2kqz_A           38 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALAS   97 (155)
T ss_dssp             HHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence            457778889999999999999999999875   8999999999999999885   44555

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=96.04  E-value=0.0029  Score=63.55  Aligned_cols=52  Identities=19%  Similarity=0.415  Sum_probs=44.7

Q ss_pred             CccccHHHHHHhhcChhhhhhhccCCCcccC---ChHHHHHHhhChHHHHHHHHH
Q 015059          274 GRFLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEM  325 (414)
Q Consensus       274 ~~~~~v~~~e~M~~dP~~Qkm~ypyLPe~MR---Np~tfk~ml~NP~yr~QLe~m  325 (414)
                      ...|+.|.|..++.||++++-++|||||.-.   .++-++-.|+.|||+|+|+-.
T Consensus       293 ~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~f  347 (411)
T 2kr0_A          293 ASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMF  347 (411)
T ss_dssp             GGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHH
T ss_pred             HHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHH
Confidence            3457899999999999999999999998543   778888889999999999643

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=94.87  E-value=0.03  Score=42.18  Aligned_cols=53  Identities=19%  Similarity=0.246  Sum_probs=37.5

Q ss_pred             HHHHHhhcChhhhhhhc-----cCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCC
Q 015059          280 DTLEKLMEDPQVQKMVY-----PSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCES  332 (414)
Q Consensus       280 ~~~e~M~~dP~~Qkm~y-----pyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~  332 (414)
                      |.+++++.||+++.++=     -.|=+-++||..+-..++||.+++-++.++.-+||-
T Consensus         3 e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~   60 (62)
T 2lnm_A            3 EVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM   60 (62)
T ss_dssp             HHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCC
Confidence            44555555555554432     234456789999988999999999999999888763

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=92.79  E-value=0.083  Score=41.45  Aligned_cols=50  Identities=28%  Similarity=0.541  Sum_probs=31.0

Q ss_pred             HHHHHHhhcChhhhhhh-----ccCCCcccCChHHHHHHhhChHHHHHHHHHHHh
Q 015059          279 VDTLEKLMEDPQVQKMV-----YPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  328 (414)
Q Consensus       279 v~~~e~M~~dP~~Qkm~-----ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~  328 (414)
                      -|.+++.|.||++|.+|     +-.|=.-|+||.-.--+++||.+++-++.+.+.
T Consensus        10 ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           10 EETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence            34555555555555442     111223567888887777888888888877665

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=91.91  E-value=0.076  Score=41.09  Aligned_cols=36  Identities=22%  Similarity=0.546  Sum_probs=23.5

Q ss_pred             HhhcChhh-hhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHh
Q 015059          284 KLMEDPQV-QKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  328 (414)
Q Consensus       284 ~M~~dP~~-Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~  328 (414)
                      +|+.||++ +|+        +.||+|-++| +||+|++-|+++.++
T Consensus         8 ~~f~~p~~~~kl--------~~dP~t~~~~-~DP~~~~~lq~i~~N   44 (71)
T 2llv_A            8 QLFADPNLIENL--------KKNPKTSEMM-KDPQLVAKLIGYKQN   44 (71)
T ss_dssp             HHHHSSSCHHHH--------HHSSTTHHHH-HSCTHHHHHHHHHHS
T ss_pred             hhccChHHHHHH--------HcChHHHHHh-cCHHHHHHHHHHHHC
Confidence            45666665 332        4566665544 888888888888776

>1q1f_A Neuroglobin; globin fold, heme protein, oxygen storage/transport complex; HET: HEM; 1.50A {Mus musculus} SCOP: a.1.1.2 PDB: 1w92_A* 3gk9_A* 2vry_A* 3gkt_A* 3gln_A* 1oj6_A*

Probab=85.93  E-value=3.9  Score=33.12  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=67.3

Q ss_pred             ccHHHHHHhh-cChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhccCCCCCchhhhhhcccCCCCcHHHHH
Q 015059          277 LTVDTLEKLM-EDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQ  355 (414)
Q Consensus       277 ~~v~~~e~M~-~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg~~~~~~~~m~D~lk~~d~~spev~~  355 (414)
                      +..+.+..|+ .+|++|+    |.|..++|-..-.-++.||++|.|-..++...+.       ..++|.|.+.-.+.+++
T Consensus        23 ~g~~~y~~lf~~~P~~~~----~F~~~~~~~~~~~~~~~~~~~~~h~~~v~~~l~~-------~v~~ld~~~~l~~~l~~   91 (151)
T 1q1f_A           23 HGTVLFARLFALEPSLLP----LFQYNGRQFSSPEDSLSSPEFLDHIRKVMLVIDA-------AVTNVEDLSSLEEYLTS   91 (151)
T ss_dssp             HHHHHHHHHHHHCGGGGG----GCCBTTBCCSSHHHHTTCHHHHHHHHHHHHHHHH-------HHHTSSCSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHChHHHH----hCCccccccccHHHHhhChHHHHHHHHHHHHHHH-------HHHhcCCHHHHHHHHHH
Confidence            5678888888 8899997    4554456655557789999999997776664322       23333333222233222


Q ss_pred             HH---HHcCCCcHHHHHHhhCC------HHHHh-hcCCHHHHHHHHHHhcChhhh
Q 015059          356 QF---EQIGLTPEEVITKMMAN------PEIAL-GFQSPRVQAAIMECSQNPMNI  400 (414)
Q Consensus       356 qF---~q~GmtP~e~~skIm~D------PELla-AfQDPEVmaA~qDi~sNPaNi  400 (414)
                      .=   ..+|++|+..  +++.+      .+.+. .+ +||+.+|...+...=+++
T Consensus        92 l~~~H~~~gV~p~~f--~~~~~~ll~~l~~~lg~~~-t~e~~~AW~~~~~~v~~~  143 (151)
T 1q1f_A           92 LGRKHRAVGVRLSSF--STVGESLLYMLEKSLGPDF-TPATRTAWSRLYGAVVQA  143 (151)
T ss_dssp             HHHHHHHHTCCTTHH--HHHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHH--HHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHH
Confidence            21   4489999854  22221      12222 34 899999988887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d2aa1b1	146	Hemoglobin, beta-chain {Antarctic fish (Trematomus	82.27

>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}

class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Hemoglobin, beta-chain
species: Antarctic fish (Trematomus newnesi) [TaxId: 35730]

Probab=82.27  E-value=2.5  Score=32.92  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             HHHHHh-hcChhhhhhhccCCCcccCChHHHHHHhhChHHHHHHHHHHHhcc
Q 015059          280 DTLEKL-MEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMC  330 (414)
Q Consensus       280 ~~~e~M-~~dP~~Qkm~ypyLPe~MRNp~tfk~ml~NP~yr~QLe~ml~~mg  330 (414)
                      ..+.++ -++|++|.+.     ..+++.+..+.|.+||++|.+...+++..+
T Consensus        26 ~~~~rlF~~~P~~~~~F-----~~~~~~~~~~~l~~~~~~~~H~~~v~~~l~   72 (146)
T d2aa1b1          26 ATLARCLVVYPWTQRYF-----GKFGNLYNAAAIAQNAMVSKHGTTILNGLD   72 (146)
T ss_dssp             HHHHHHHHHSGGGGGGC-----GGGCCCSSHHHHHHCHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhCcHHHHHh-----hcccCCCCHHHHhcCHHHHHHHHHHHHHHH
Confidence            344444 4689999876     345688889999999999999999998754