Citrus Sinensis ID: 015075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccEEcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHcccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mllgayswgiisdnygrrkSFLGIAMVTSVAGLlssfspnyvSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFyglapesprylCAKARTVDAHRILEKMAFvnqtklppgilvsdKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSklssgdnkcgskvlhadkskdnslYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVAtiyapeiyptsarttgfgvasslgkvggmVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgRELKDTVDAIES
Flexible Loop (DISEMBL)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMafvnqtklppgilVSDKAIKENEesnllrdthmlSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKvlhadkskdnSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASsllfpfetmgrELKDTVDAIES
Low Complexity Region (SEG)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCfvgvglggvpvflAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered region (IsUnstruct)
**LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDK**************HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS***KCGSKVLHA***KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG************
Disordered Region (DISOPRED)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVS*********************************SSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD*******
Disordered Region (DISEMBL)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Disordered Region (DISPRO)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKEN***********************SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.990	0.818	0.55	1e-115
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.888	0.669	0.355	4e-58
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.888	0.669	0.355	5e-58
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.912	0.687	0.339	4e-57
P30638	520	Putative transporter ZK63	yes	no	0.920	0.730	0.320	5e-57
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.888	0.669	0.350	6e-57
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.883	0.666	0.350	8e-54
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.888	0.669	0.340	4e-53
Q6PDF3	494	Putative transporter SVOP	no	no	0.895	0.748	0.295	2e-42
Q8N434	492	Putative transporter SVOP	no	no	0.895	0.752	0.294	4e-42

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/420 (55%), Positives = 297/420 (70%), Gaps = 11/420 (2%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWGI+SD +GRRK F+  A+VT VAG LS+FSPNY+ L+I RC VG+GLGG PV
Sbjct: 73  MLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPV 132

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             +++LEF+P   RG WMV  SAFWT GTIFEASLAW+VM RL WRWLLAFSSVPS  LL
Sbjct: 133 LASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLL 192

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRD 179
           LFY    ESPRYL  + R  +A  ILEK+A +N+T+LPPG+L S+   +  E  N+   +
Sbjct: 193 LFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTEN 252

Query: 180 THML---------SMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV 230
           TH+L         ++++ +    K    S   L S  L++ TLLLWV+FF N F+YYG V
Sbjct: 253 THLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYYGVV 312

Query: 231 LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV 290
           LLT++L++  N+C         S D + Y DVFIAS AE PGL++SA +VD++GRK SM 
Sbjct: 313 LLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMA 371

Query: 291 LMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA 350
            M  + CIFLLPL+ HQS  +TTVLLFG R+C++   TV  IYAPEIYPT+ RTTG GV 
Sbjct: 372 SMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVG 431

Query: 351 SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 410
           SS+G++GG++CPLVAVGLV  CH  +AV+LFEVV +++     LFPFET GR+L D++ A
Sbjct: 432 SSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSISA 491

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  225 bits (574), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 147/414 (35%), Positives = 218/414 (52%), Gaps = 47/414 (11%)

Query: 8   WGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLE 67
           WG ISD YGR+       + T   G+LS+F+P Y  +++ R  VG G+GGVP  +  + E
Sbjct: 140 WGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAE 199

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGL 125
           F+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S+VP   FA+L F+  
Sbjct: 200 FLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW-- 257

Query: 126 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM 185
            PES RY         A   L+++A  N   +P G L+    I   E+   +RD      
Sbjct: 258 LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----ISRQEDRGKMRD------ 307

Query: 186 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG- 244
                            LF+     TTLLLW ++F+N FSYYG VLLT++L    + CG 
Sbjct: 308 -----------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGI 350

Query: 245 --------SKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-- 294
                   +K   A +      Y+D+   +L+E PG++++  I+D++GRK +M L FV  
Sbjct: 351 SSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIF 410

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
           S C  LL +   ++  V T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + 
Sbjct: 411 SFCSLLLFICVGRN--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMA 468

Query: 355 KVGGMVCPLVA-VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           +VG ++ P +A V L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 469 RVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  225 bits (574), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 147/414 (35%), Positives = 218/414 (52%), Gaps = 47/414 (11%)

Query: 8   WGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLE 67
           WG ISD YGR+       + T   G+LS+F+P Y  +++ R  VG G+GGVP  +  + E
Sbjct: 140 WGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAE 199

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGL 125
           F+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S+VP   FA+L F+  
Sbjct: 200 FLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW-- 257

Query: 126 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM 185
            PES RY         A   L+++A  N   +P G L+    I   E+   +RD      
Sbjct: 258 LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----ISRQEDRGKMRD------ 307

Query: 186 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG- 244
                            LF+     TTLLLW ++F+N FSYYG VLLT++L    + CG 
Sbjct: 308 -----------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGI 350

Query: 245 --------SKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-- 294
                   +K   A +      Y+D+   +L+E PG++++  I+D++GRK +M L FV  
Sbjct: 351 SSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIF 410

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
           S C  LL +   ++  V T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + 
Sbjct: 411 SFCSLLLFICVGRN--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMA 468

Query: 355 KVGGMVCPLVA-VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           +VG ++ P +A V L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 469 RVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 214/418 (51%), Gaps = 41/418 (9%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           M+  +  WG +SD YGRR       + T   G+LS+F+P Y  +++ R  VG G+GGVP 
Sbjct: 133 MMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQ 192

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFA 118
            +  + EF+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S++P   FA
Sbjct: 193 SVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALPLMLFA 252

Query: 119 LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLR 178
           +L F+   PES RY         A   L+++A  N   +P G L+    +   E+   +R
Sbjct: 253 ILCFW--LPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLI----VSRQEDRGKIR 306

Query: 179 DTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS 238
           D                       LFS +   TTLLLW ++F+N FSYYG VLLT++L  
Sbjct: 307 D-----------------------LFSPQFRCTTLLLWFIWFSNAFSYYGLVLLTTELFQ 343

Query: 239 GDNKCG-SKVLHADKSKDN--------SLYVDVFIASLAELPGLILSAIIVDKIGRKLSM 289
             + C  S    A K K +          Y D+   +L+E PGL+++  I+D++GRK +M
Sbjct: 344 AGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTM 403

Query: 290 VLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGV 349
            + F+      L L       V TV LF  R  ++G    A +Y PE+YPT+ R  G G 
Sbjct: 404 AICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGT 463

Query: 350 ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
            S + +VG ++ P +A  ++ S  + L V+++    VLA  +S   P ET GR L+++
Sbjct: 464 CSGMARVGALITPFIAQVMLES-SIYLTVLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  222 bits (565), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 133/415 (32%), Positives = 206/415 (49%), Gaps = 35/415 (8%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           M+L +  WG I D +GRRK      +V  + G++S  SP++  L+ FR   G G+GGVP 
Sbjct: 132 MMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQ 191

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFA 118
            +  + EF+P + R + +V + +FW  G +FEA LA+ VM    WR L+  SS+P   FA
Sbjct: 192 SVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFA 251

Query: 119 LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLR 178
           +  F+   PES R+  A      A   L+  A +N+ +LP G LVS          ++  
Sbjct: 252 VASFW--LPESARFDMASGHPERALETLQAAARMNRVQLPTGRLVSSTKAGSESRGDIAN 309

Query: 179 DTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS 238
                                   L S  L +TT+LLW ++    FSYYG VL T+ L  
Sbjct: 310 ------------------------LLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQ 345

Query: 239 GDNKCGSKVLHADKSKD------NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLM 292
             ++C   +       +       S Y D+   +LAE PGLI++ +I++  GRK +M L 
Sbjct: 346 SHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALE 405

Query: 293 FVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASS 352
           +    IF   L F       TVL+F  R  ++G    A +Y PE+YPT+ R  G G  S+
Sbjct: 406 YAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSA 465

Query: 353 LGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           + ++G +V P +A  + +   L L + ++    +L + +SL  P ET GR++ D+
Sbjct: 466 MARIGAIVTPFIA-QVASEKSLSLPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  221 bits (564), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 217/414 (52%), Gaps = 47/414 (11%)

Query: 8   WGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLE 67
           WG ISD YGR+       + T   G+LS+F+P Y  +++ R  VG G+GGVP  +  + E
Sbjct: 140 WGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAE 199

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--SFALLLFYGL 125
           F+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S+VP   FA+L F+  
Sbjct: 200 FLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFW-- 257

Query: 126 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM 185
            PES RY         A   L+++A  N   +P G L+    I   E+   +RD      
Sbjct: 258 LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----ISRQEDRGKMRD------ 307

Query: 186 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG- 244
                            LF+     TTLLLW ++F+N FSYYG VLLT++L    + C  
Sbjct: 308 -----------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSI 350

Query: 245 --------SKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-- 294
                   +K   A +      Y+D+   +L+E PG++++  I+D++GRK +M L FV  
Sbjct: 351 SSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVF 410

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
           S C  LL +   ++ +  T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + 
Sbjct: 411 SFCSLLLFICVGRNML--TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMA 468

Query: 355 KVGGMVCPLVA-VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           +VG ++ P +A V L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 469 RVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  211 bits (537), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 218/416 (52%), Gaps = 51/416 (12%)

Query: 8   WGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLE 67
           WG ISD YGR+         T   G+LS+F+P Y  +++ R  VG G+GGVP  +  + E
Sbjct: 140 WGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAE 199

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPS--FALLLFYGL 125
           F+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S+ P   FA+L F+  
Sbjct: 200 FLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFW-- 257

Query: 126 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSM 185
            PES RY         A   L+++A  N   +P G L+    I   E+   +RD      
Sbjct: 258 LPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----ISRQEDRGKMRD------ 307

Query: 186 TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG- 244
                            LF+     TTLLLW ++F+N FSYYG VLLT++L    + C  
Sbjct: 308 -----------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSI 350

Query: 245 ---SKVLHADK-------SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 294
               K + A         SK++  Y+D+   +L+E PG++++  ++D++GRK +M L FV
Sbjct: 351 SSRKKAVEAKCSLACEYLSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFV 408

Query: 295 --SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASS 352
             S C  LL +   ++  V T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S 
Sbjct: 409 IFSLCSLLLFICIGRN--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSG 466

Query: 353 LGKVGGMVCPLVA-VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           + +VG ++ P +A V L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 467 MARVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  209 bits (531), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 141/414 (34%), Positives = 214/414 (51%), Gaps = 47/414 (11%)

Query: 8   WGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLE 67
           WG ISD YGR+       + T   G+LS+F+P Y  +++ R  VG G+GGVP  +  + E
Sbjct: 140 WGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAE 199

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAP 127
           F+P+  R + ++ +  FW  GT+FE  LA  VM  L WRWLL  S+ P     +     P
Sbjct: 200 FLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLP 259

Query: 128 ESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTR 187
           ES RY         A   L+++A  N   +P G L+    I   E+   +RD        
Sbjct: 260 ESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLI----ISRQEDRGKMRD-------- 307

Query: 188 KITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG--- 244
                          LF+     TTLLLW ++F+N FSYYG VLLT++L    + C    
Sbjct: 308 ---------------LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISS 352

Query: 245 -SKVLHADK-------SKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV-- 294
             K + A         SK++  Y+D+   +L+E PG++++  ++D++GRK +M L F+  
Sbjct: 353 RKKAVEAKCSLACEYLSKED--YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIF 410

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
           S C  LL +   ++  V T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + 
Sbjct: 411 SLCSLLLFICIGRN--VLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMA 468

Query: 355 KVGGMVCPLVA-VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           +VG ++ P +A V L +S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct: 469 RVGALITPFIAQVMLESSVYLTLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 194/416 (46%), Gaps = 46/416 (11%)

Query: 9   GIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEF 68
           G+++D YGR K  L   +  +   LL+SFSP+Y+  V  R  VG G+ G    L    EF
Sbjct: 105 GLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEF 164

Query: 69  VPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPE 128
           +P  +RG  +     FW AG++   S+A VV+  + WRWL+  +S+P   L++ +   PE
Sbjct: 165 LPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPE 224

Query: 129 SPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK 188
           S R+  +   T  A   LE +A +N++ +P G LV     K    ++LL           
Sbjct: 225 SARFNVSTGNTQAALNTLESIAKMNRSVMPEGQLVEPILEKRGRFADLLDS--------- 275

Query: 189 ITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSK-- 246
                             K +RTTL +W+++    F+YYG +L +++L   D  CGSK  
Sbjct: 276 ------------------KYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSE 317

Query: 247 ----VLHADKSKDNSL------------YVDVFIASLAELPGLILSAIIVDKIGRKLSMV 290
               V+         L            Y  + I++L E+    L+ + ++ +GR+LS+ 
Sbjct: 318 SEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLS 377

Query: 291 LMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA 350
           +      +F L L    S+      LF +R  V        IY  E+YPT  R  G G +
Sbjct: 378 ITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTS 437

Query: 351 SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 406
            SL ++G MV P ++  L+++  L  A+ LF  V V+   S+   P ET GR L+ 
Sbjct: 438 GSLCRIGAMVAPFISQVLMSASFLG-ALCLFSSVCVVCAISAFTLPIETKGRALQQ 492

Mus musculus (taxid: 10090)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  172 bits (437), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 196/414 (47%), Gaps = 44/414 (10%)

Query: 9   GIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEF 68
           G+++D YGR K  L   +  +   LL+SF+P+Y+  V  R  VG G+ G    L    EF
Sbjct: 105 GLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEF 164

Query: 69  VPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPE 128
           +P  +RG  +     FW AG++    LA V++  + WRWL+  +S+P   L++ +   PE
Sbjct: 165 LPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPE 224

Query: 129 SPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRK 188
           S R+  +   T  A   LE++A +N++ +P G LV     K    ++LL           
Sbjct: 225 SARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVEPVLEKRGRFADLL----------- 273

Query: 189 ITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSK-- 246
                             K +RTTL +WV++    F+YYG +L +++L   D  CGSK  
Sbjct: 274 ----------------DAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSD 317

Query: 247 ----VLHADKSKDNSL----------YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLM 292
               V   D  +  S           Y  + I+++ E+    L+ + ++ +GR+LS+ + 
Sbjct: 318 SAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSIT 377

Query: 293 FVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASS 352
                +F L L    S+      LF +R  V        IY  E+YPT+ R  G G + S
Sbjct: 378 MGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGS 437

Query: 353 LGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 406
           L ++G MV P ++  L+++  L  A+ LF  V V+   S+   P ET GR L+ 
Sbjct: 438 LCRIGAMVAPFISQVLMSASILG-ALCLFSSVCVVCAISAFTLPIETKGRALQQ 490

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
224118680	492	predicted protein [Populus trichocarpa]	0.992	0.833	0.673	1e-150
255574249	497	sugar transporter, putative [Ricinus com	1.0	0.830	0.642	1e-147
224118546	493	predicted protein [Populus trichocarpa]	0.995	0.833	0.637	1e-146
255573803	498	sugar transporter, putative [Ricinus com	0.997	0.827	0.631	1e-143
383932368	482	MFS [Gossypium hirsutum]	0.985	0.844	0.639	1e-139
225443470	495	PREDICTED: synaptic vesicle 2-related pr	0.997	0.832	0.606	1e-130
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.985	0.832	0.569	1e-129
242039569	491	hypothetical protein SORBIDRAFT_01g02099	0.983	0.826	0.548	1e-127
357467655	499	Synaptic vesicle 2-related protein [Medi	0.995	0.823	0.584	1e-125
224031871	496	unknown [Zea mays] gi|238909026|gb|ACN35	0.983	0.818	0.543	1e-125

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/410 (67%), Positives = 326/410 (79%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWG+ SD  GRR+ FLGI ++TS AG LS+FSPNYVSL+I RC VGVGLGG PV
Sbjct: 74  MLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPV 133

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
           F ++FLEFVP SHRG WMV  S FWT GTIFEA+LAW+V+ RLNWRWLLAFSS+PS A L
Sbjct: 134 FSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQL 193

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
            FY + PESPRYL  K R  +AH ILEK+A +NQ+KLPPG+LVSD  I  +EES   + T
Sbjct: 194 FFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYT 253

Query: 181 HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 240
            +LS TR +    KSGFSSF MLFS KLIRTTLLLW+LFF N FSYYG +LLTS+LSS +
Sbjct: 254 PLLSSTRNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEE 313

Query: 241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL 300
            KC S VL ++  +D+SLY++VFI SLAELPG++LSAIIVD+ GRKLSM  MFV ACIFL
Sbjct: 314 GKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFL 373

Query: 301 LPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMV 360
           LPLVFHQ A +TT LLFG RMC  GT TVA IYAPE+YPT  R TG GVA+++G++GGMV
Sbjct: 374 LPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMV 433

Query: 361 CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 410
           CPLVAVGLV  CHL+ A+ILFEVV V+++   LLFPFET GREL D++ A
Sbjct: 434 CPLVAVGLVAGCHLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSLAA 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/414 (64%), Positives = 326/414 (78%), Gaps = 1/414 (0%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GA +WG+ISDNYGRRK  L I ++TS AG +S+FSPNY++LV+ RC VG GLGG  V
Sbjct: 77  MLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHV 136

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
           FL++FLEF+P SHRG+WMV  S FWT G IFEASLAW+VM RLNWRWLLA S+VPSF+LL
Sbjct: 137 FLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLL 196

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEE-SNLLRD 179
           LFYGL PESPRYLC K RT  AH++LEK+A VNQ +LPPG+LVS   IKE+EE S L + 
Sbjct: 197 LFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQK 256

Query: 180 THMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG 239
             +L M R+    LKSGFSSF +LFS  LI+TTLLLWVLFF NVFSYYG +LLTS+LSS 
Sbjct: 257 RSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSS 316

Query: 240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF 299
           ++KC   +LH+   +D SL++DV I S AELPG++LSA++VD+ GRKLSM +MF+ A IF
Sbjct: 317 ESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIF 376

Query: 300 LLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGM 359
           LLPLV  QS ++TT LLFG RM   GT TVA+IYAPE+YPTS R+TG G AS++G++GGM
Sbjct: 377 LLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGM 436

Query: 360 VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES 413
           VCPLVAV LV++CH + A+ILFEVV  + +   LLFPFET GREL D + A ES
Sbjct: 437 VCPLVAVALVSNCHFKAAIILFEVVIAITVVCILLFPFETSGRELSDRLAAPES 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/411 (63%), Positives = 325/411 (79%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWG++SDN GRR++          +GLLS+FSPNY SLVI RC VG+GLGG  V
Sbjct: 73  MLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIRCLVGLGLGGSTV 132

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEFVP  HRG+WMV  S FWT G IFEASLAW+VM RL+WRWLLAFSS+PS ALL
Sbjct: 133 LCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWLLAFSSLPSIALL 192

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFYG+ PESPRYLC K R  DAH+IL+K+A +NQ++LPPG+LV D  + + E+S   + T
Sbjct: 193 LFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTVGQEEKSAPSKYT 252

Query: 181 HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 240
            +LS TRK+    KS FSSFFMLFS  LI+TTLLLWVL F NVFSYYG +LLTS+LSS  
Sbjct: 253 PLLSSTRKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYYGIILLTSELSSQQ 312

Query: 241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL 300
            KCGS +L ++  +++SLY++VF+ SLAELPGL+LSAIIVD++GRKLSM LM V  CIFL
Sbjct: 313 GKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKLSMALMLVLGCIFL 372

Query: 301 LPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMV 360
            PL+F+ SA +TT +LFG RMCV G+ T+AT+YAPE+YPT+ R TG GVASS+G++GGM+
Sbjct: 373 FPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGAGVASSVGRIGGMI 432

Query: 361 CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAI 411
           CPLVAVGLVT C+L  A+ILFEVV  ++  SSLLFPFET G+EL D+VD +
Sbjct: 433 CPLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDSVDHV 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/412 (63%), Positives = 310/412 (75%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML GAYSWG+ISDNYGRRK  LG  ++T  AG LS+F PNY+SL+  RC VG+GLGG PV
Sbjct: 79  MLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPV 138

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
           F ++FLEFVP SHRG WMV  S  WT GTIFEA+LAW+VM RL+WRWLLAFSS+PS  LL
Sbjct: 139 FSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLL 198

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFY LAPESPRYLC K R  DAHRILEK+A +NQ KLP GILVSD     +EES+ L   
Sbjct: 199 LFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQ 258

Query: 181 HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 240
            +LS+ RK     KS FSSFFMLFS +LI+TTLLLWVL+F N F YYG +LLTS+LS   
Sbjct: 259 PLLSLARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQ 318

Query: 241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL 300
           ++C S     +  +D +LY+D+FI SLAELPG+ILSAI VD+ GRK SM+ MFV+ACIFL
Sbjct: 319 DECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFL 378

Query: 301 LPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMV 360
           LPLV HQSAV+ T  LFG RMC  GT T+A IY PE+YPT  RTTG GVAS+ G++GGM+
Sbjct: 379 LPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMI 438

Query: 361 CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE 412
           CPLVAVGLVT CH+   +I+FEVV  ++    L FP+ET G EL D+V   +
Sbjct: 439 CPLVAVGLVTGCHVEAGIIVFEVVAAISAICLLFFPYETKGCELSDSVGPFD 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/408 (63%), Positives = 316/408 (77%), Gaps = 1/408 (0%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           MLLGA +WG++SDNYGRRK FL I+MVT  AGLLS+FSPNY++L + R  VG GLGG  V
Sbjct: 74  MLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSV 133

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
           FL++FLEF+P S+RG WMV  S FWT G+IFEA+LAW+VM RLNWRW+LAFS+VPSFALL
Sbjct: 134 FLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALL 193

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           + YG+APESPRYLC K  T DA RILEK+A VNQTKLPPG+LVS ++  ++EES    +T
Sbjct: 194 ILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENT 253

Query: 181 H-MLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG 239
             +L    K T + KSGFSSFFMLFS KLIRTTLLLWVLFF + FSYYG +LLTSKLSSG
Sbjct: 254 APLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSG 313

Query: 240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF 299
            + C   +      +D+ LY++ FI S+AELPGL+LSAI+VD++GRK SM +MF  A IF
Sbjct: 314 QSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIF 373

Query: 300 LLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGM 359
           L PL+  Q AV+TT LLFG RM   GT TVA+IY+PE+YPTS RTTG GVAS++G++GGM
Sbjct: 374 LTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGM 433

Query: 360 VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           VCPLVAVGLV  CH   AV LF V  V++I    LFP++T GREL DT
Sbjct: 434 VCPLVAVGLVNECHQTAAVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/419 (60%), Positives = 307/419 (73%), Gaps = 7/419 (1%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWGI+SDN+GRRK FL  A+VTS AG LS+F+PNY+SL+I RC VG+GLGG PV
Sbjct: 73  MLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILRCLVGLGLGGGPV 132

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEF+P  +RG WMV  S FWT GTI EASLAW VM  L WRWLLA S++PS  LL
Sbjct: 133 LSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWLLALSALPSLLLL 192

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           +FY + PESPRYLC K RT +A  +LEK+A +N+ +LPPGILVSD  +   E SN   D 
Sbjct: 193 IFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSDHQVGVPENSNPSEDM 252

Query: 181 HMLS------MTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS 234
            +LS       + K  D    G SS FML S KL+R+TLLLW++FF N FSYYG VLLTS
Sbjct: 253 KLLSPEADSGSSHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGNAFSYYGLVLLTS 312

Query: 235 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 294
           +L++  NKCG   L ++K++D + Y DVFI S AE PGL+LSA  VD +GRKLSM  MF 
Sbjct: 313 ELNNEQNKCGVAELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDILGRKLSMSAMFF 371

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
             CIFLLPLVFHQ   +TT LLFG R+C+T T TV  IYAPEIYPTS RTTG GVASS+G
Sbjct: 372 LCCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSVRTTGVGVASSVG 431

Query: 355 KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES 413
           ++GGM+CPLVAVGLV  CH   AVILFE+V  ++    +LFPFET GRELKDT+ + E 
Sbjct: 432 RIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGRELKDTLSSSEQ 490

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/411 (56%), Positives = 293/411 (71%), Gaps = 4/411 (0%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAY+WG++SDNYGRR+ FL  A+VTS AG LS+F+PNYVSL+  R  VG+GLGG PV
Sbjct: 74  MLIGAYTWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPV 133

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEFVP   RG WMV  SAFWT GTIFEASLAW VM +  WRWLLA S+VPSF LL
Sbjct: 134 LASWFLEFVPAPTRGTWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLL 193

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFY + PESPR+LC K R  +A  +LEKMA +N  +LP G LVSDK I+ +E S     T
Sbjct: 194 LFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDELSTSESTT 253

Query: 181 HMLSMTRK---ITDKLKS-GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL 236
            +         I DK+ S G  S   L S KLIR TLLLW+ FF N FSYYG VLLTS+L
Sbjct: 254 LLADAEEDDTIIEDKVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSEL 313

Query: 237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA 296
           S+G+  C  + + +  S D SLY +VFI+S AE+PG  LSA+IVD+IGRKLSM  M  ++
Sbjct: 314 SNGNRICAKEEVESIHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTS 373

Query: 297 CIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV 356
           C+FL PL+F ++ ++T V LFG R+C++ + T+  IYAPEIYPTS RTTG GVASS+G++
Sbjct: 374 CVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRI 433

Query: 357 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           GG++CPLVAV LV SC    A++LFE+V  L+  +   FPFET G  L DT
Sbjct: 434 GGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039569|ref|XP_002467179.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor] gi|241921033|gb|EER94177.1| hypothetical protein SORBIDRAFT_01g020990 [Sorghum bicolor]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/414 (54%), Positives = 294/414 (71%), Gaps = 8/414 (1%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWG++SDNYGRR+ FL  A+VTS AG LS+F+PNY+SL+  R  VG+GLGG PV
Sbjct: 74  MLIGAYSWGVVSDNYGRRRGFLFTAIVTSGAGFLSAFAPNYLSLISLRFLVGIGLGGGPV 133

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEFVP   RG WMV  SAFWT GTI EASLAW VM +  WRWLLA S++PSF LL
Sbjct: 134 LGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTVMPKFGWRWLLALSAIPSFLLL 193

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFY + PESPR+LC K RT +A  +LEKMA +N  +LP G LVSDK I+ +E S     T
Sbjct: 194 LFYAITPESPRFLCMKGRTTEAVDVLEKMARLNNVQLPSGRLVSDKNIELDEVSGSSEST 253

Query: 181 HMLSMTRKITDKLKS-------GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 233
            +LS   + +D L         G  S   L + KLIR TLLLW+ FF N F+YYG VLLT
Sbjct: 254 TLLSGAEE-SDNLSEDRGSDFGGIKSVGKLLAPKLIRATLLLWMAFFGNAFAYYGIVLLT 312

Query: 234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMF 293
           S+LS+G+  C  + + +  S + SLY +VFI+S AE+PG  LSA+IVD+ GRKLSM  M 
Sbjct: 313 SELSNGNRICAKQDVESVNSTNASLYKNVFISSFAEIPGSFLSAMIVDRFGRKLSMASML 372

Query: 294 VSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL 353
            ++C+FL+PLVF ++ ++T + LFG R+C++ + T+  IYAPEIYPT+ RTTG G+ASS+
Sbjct: 373 FTSCVFLVPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEIYPTAVRTTGIGIASSV 432

Query: 354 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           G++GG++CPLVAV LV SC    A++LFE+V  L+  +   FPFET G  L DT
Sbjct: 433 GRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 486

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/419 (58%), Positives = 301/419 (71%), Gaps = 8/419 (1%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWGI+SD +GRRK FL  A VT+ AG  SS SPNYVSL++FR  VG+GLGG PV
Sbjct: 79  MLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGLGGGPV 138

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEFVP  +RG WMV  S FWT GTIFEASLAW+VM RL WRWLLA SS+P+  LL
Sbjct: 139 LSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLPTSFLL 198

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFY + PESPRYLC K RT +A  +LE ++ +N  KLP G+LVSD  I+  +  N   DT
Sbjct: 199 LFYKMTPESPRYLCLKGRTTEAIDVLETISRLNGKKLPSGVLVSDNQIELQKIDNPSEDT 258

Query: 181 HMLSMTRKITDKLK------SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS 234
            +LS  +   +  K       G SS  +L S KL R+TLLLW +FF N FSYYG VLLTS
Sbjct: 259 VLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGLVLLTS 318

Query: 235 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 294
           +L   ++KC    L  +KS+D S Y  VFIAS AELPGL+LSA+ VDK+GRKLSM +MF 
Sbjct: 319 ELKR-NSKCIPDKLQTEKSQDVS-YKGVFIASFAELPGLLLSAVAVDKLGRKLSMSIMFF 376

Query: 295 SACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG 354
             CIFLLPL F+    +TT LLFG R+C+T T T+  IYAPEIYPTS RTTG GVASS+G
Sbjct: 377 MCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGVASSVG 436

Query: 355 KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIES 413
           ++GGM+CPLVAVGLV  CH   AV+LF +V +++    + FPFETMG+EL+DTV +I+ 
Sbjct: 437 RIGGMLCPLVAVGLVHGCHQTAAVLLFIIVALVSGICVVFFPFETMGQELQDTVSSIKQ 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224031871|gb|ACN35011.1| unknown [Zea mays] gi|238909026|gb|ACN35622.2| unknown [Zea mays] gi|413934143|gb|AFW68694.1| hypothetical protein ZEAMMB73_097319 [Zea mays] gi|413934144|gb|AFW68695.1| hypothetical protein ZEAMMB73_097319 [Zea mays]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/414 (54%), Positives = 292/414 (70%), Gaps = 8/414 (1%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPV 60
           ML+GAYSWG++SDNYGRR+ FL  A++TS AG  S+F+PNY+SL+  R  VG+GLGG PV
Sbjct: 79  MLIGAYSWGVVSDNYGRRRGFLFTAIMTSGAGFFSAFAPNYLSLISLRFLVGIGLGGGPV 138

Query: 61  FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
             ++FLEFVP   RG WMV  SAFWT GTI EASLAW +M +  WRWLLA S+VPSF LL
Sbjct: 139 LGSWFLEFVPAPTRGTWMVVFSAFWTVGTILEASLAWTIMPKFGWRWLLALSAVPSFLLL 198

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
           LFY + PESPR+LC K RT +A  ILEKMA +N  +LP G LVSDK I+ +E S     T
Sbjct: 199 LFYAITPESPRFLCMKGRTTEAVDILEKMARLNNVQLPSGRLVSDKNIELDEVSGSSEST 258

Query: 181 HMLSMTRKITDKLKS-------GFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT 233
            +L+   + +D L         G  S   L + KLIR TLLLW+ FF N F+YYG VLLT
Sbjct: 259 TLLAGAEE-SDNLNEDQGSDFGGIKSVGKLLAPKLIRATLLLWMAFFGNAFAYYGIVLLT 317

Query: 234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMF 293
           S+LS+G+  C  + + +  S + SLY +VFI+S AE+PG  LSA+IVD+ GRK SM  M 
Sbjct: 318 SELSNGNRICAKEDVESVHSTNASLYKNVFISSFAEIPGSFLSAMIVDRFGRKRSMASML 377

Query: 294 VSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL 353
            ++C+FLLPLVF ++ ++T + LFG R+C++ + T+  IYAPEIYPT+ RTTG G+ASS+
Sbjct: 378 FTSCVFLLPLVFSRTDILTRISLFGARLCISASFTIVYIYAPEIYPTAVRTTGIGIASSV 437

Query: 354 GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           G++GG++CPLVAV LV SC    A++LFE+V  L+  +   FPFET G  L DT
Sbjct: 438 GRIGGILCPLVAVALVHSCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 491

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.987	0.816	0.539	2.5e-113
WB|WBGene00014021	520	svop-1 [Caenorhabditis elegans	0.535	0.425	0.324	7.3e-54
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.486	0.366	0.377	1.8e-53
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.486	0.416	0.368	4.5e-53
ZFIN|ZDB-GENE-070705-359	411	svopb "SV2 related protein hom	0.498	0.501	0.342	1.8e-52
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.486	0.367	0.368	2e-52
UNIPROTKB|Q1JP63	548	SVOP "Synaptic vesicle 2-relat	0.486	0.366	0.368	2e-52
UNIPROTKB|F1RGB1	548	SVOP "Uncharacterized protein"	0.486	0.366	0.368	2e-52
RGD|620277	548	Svop "SV2 related protein" [Ra	0.486	0.366	0.368	2.3e-52
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.486	0.366	0.368	2.3e-52

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 227/421 (53%), Positives = 288/421 (68%)

Query:     1 MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCXXXXXXXXXXX 60
             ML+GAYSWGI+SD +GRRK F+  A+VT VAG LS+FSPNY+ L+I RC           
Sbjct:    73 MLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPV 132

Query:    61 XXAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL 120
               +++LEF+P   RG WMV  SAFWT GTIFEASLAW+VM RL WRWLLAFSSVPS  LL
Sbjct:   133 LASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLL 192

Query:   121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL-LRD 179
             LFY    ESPRYL  + R  +A  ILEK+A +N+T+LPPG+L S+   +  E  N+   +
Sbjct:   193 LFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIPTEN 252

Query:   180 THMLSM--------TRKITDKL--KSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGA 229
             TH+L            KI  K   + GFS    L S  L++ TLLLWV+FF N F+YYG 
Sbjct:   253 THLLKAGESGEAVAVSKIVLKADKEPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGV 311

Query:   230 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSM 289
             VLLT++L++  N+C         S D + Y DVFIAS AE PGL++SA +VD++GRK SM
Sbjct:   312 VLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASM 370

Query:   290 VLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGV 349
               M  + CIFLLPL+ HQS  +TTVLLFG R+C++   TV  IYAPEIYPT+ RTTG GV
Sbjct:   371 ASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGV 430

Query:   350 ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD 409
              SS+G++GG++CPLVAVGLV  CH  +AV+LFEVV +++     LFPFET GR+L D++ 
Sbjct:   431 GSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDSIS 490

Query:   410 A 410
             A
Sbjct:   491 A 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 327 (120.2 bits), Expect = 7.3e-54, Sum P(2) = 7.3e-54
 Identities = 75/231 (32%), Positives = 120/231 (51%)

Query:   186 TRKITDKLKSGFSS---FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNK 242
             T ++    K+G  S      L S  L +TT+LLW ++    FSYYG VL T+ L    ++
Sbjct:   290 TGRLVSSTKAGSESRGDIANLLSPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDE 349

Query:   243 C-GSKVLHADKSK-----DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA 296
             C G    +  + +       S Y D+   +LAE PGLI++ +I++  GRK +M L +   
Sbjct:   350 CHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVF 409

Query:   297 CIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV 356
              IF   L F       TVL+F  R  ++G    A +Y PE+YPT+ R  G G  S++ ++
Sbjct:   410 AIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARI 469

Query:   357 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             G +V P +A  + +   L L + ++    +L + +SL  P ET GR++ D+
Sbjct:   470 GAIVTPFIAQ-VASEKSLSLPIGIYGTAAILGLIASLSLPIETKGRQMMDS 519

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.8e-53, Sum P(2) = 1.8e-53
 Identities = 82/217 (37%), Positives = 124/217 (57%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + CG     K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRN--V 425

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 4.5e-53, Sum P(2) = 4.5e-53
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNML- 361

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   362 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 420

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   421 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 455

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 74/216 (34%), Positives = 119/216 (55%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKC---GSKVLHADKSKDNSL- 258
             LF  +  RTTLL+W ++F + F YYG VLLT++L    + C    S + H        L 
Sbjct:   193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252

Query:   259 ---YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL 315
                Y+D+   + AE PGL+++  +V++I R+ SMV+ F    + +LPL      +V TV 
Sbjct:   253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312

Query:   316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHL 374
             +F  R  +     +A +Y PE++PT+ R  G G +S + +VG +V P +A V L +S +L
Sbjct:   313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372

Query:   375 RLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA 410
              L+V L  +  +L  A+    P ET GR L+++  +
Sbjct:   373 TLSVYL--IFGLLGTAACWALPMETEGRSLQESTQS 406

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 425

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 484

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   485 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 519

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q1JP63 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 426

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   427 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RGB1 SVOP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 326 (119.8 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  I+D++GRK +M L FV  S C  LL +   ++ + 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNML- 426

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   427 -TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--V 425

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 80/217 (36%), Positives = 123/217 (56%)

Query:   203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCG----SKVLHADKSK---- 254
             LF+     TTLLLW ++F+N FSYYG VLLT++L    + C      K + A  S     
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   255 -DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SACIFLLPLVFHQSAVV 311
                  Y+D+   +L+E PG++++  ++D++GRK +M L FV  S C  LL +   ++  V
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRN--V 425

Query:   312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA-VGLVT 370
              T+LLF  R  ++G    A +Y PE+YPT+ R  G G  S + +VG ++ P +A V L +
Sbjct:   426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query:   371 SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
             S +L LAV  +    +LA  +S   P ET GR L+++
Sbjct:   486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRALQES 520

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.55	0.9903	0.818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-68
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-30
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-22
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	9e-22
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-20
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	7e-14
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	2e-10
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	4e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	9e-10
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-09
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-07
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	3e-07
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-06
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-04
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	0.002

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  223 bits (571), Expect = 4e-68
 Identities = 124/411 (30%), Positives = 207/411 (50%), Gaps = 49/411 (11%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VP 59
           +LLG++ +G +SD +GR+K  L   +VT+V+G+L++FSPNY   ++FR  VG+G+GG   
Sbjct: 140 VLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWV 199

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL 119
             +    EF+P   R      +  F++ G +    +A+ +    +WRWL    S+P+F  
Sbjct: 200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLF 256

Query: 120 LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRD 179
            L     PESPR+L ++ R  +A +IL+++A +N  KLP  +L                 
Sbjct: 257 FLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL----------------- 299

Query: 180 THMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS 238
              LS+ + ++   K    SF  LF +  L +TTL L +L+F   FSYYG VL    L  
Sbjct: 300 --SLSLEKDLSSSKK--QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG 355

Query: 239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV--SA 296
                             ++Y+D+FI+ L ELP  +++ +++D++GR+ +M    +    
Sbjct: 356 ------------------NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGV 397

Query: 297 CIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV 356
            + LL  V      + T L    +  +T    +  +Y  E+YPT  R  G GV S++ +V
Sbjct: 398 ALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARV 457

Query: 357 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDT 407
           G ++ P +    +    L L ++LF  + +LA   +L  P ET G  L +T
Sbjct: 458 GSIISPFLV--YLGEKWLFLPLVLFGGLALLAGILTLFLP-ETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  120 bits (303), Expect = 2e-30
 Identities = 84/368 (22%), Positives = 138/368 (37%), Gaps = 41/368 (11%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VP 59
           M  GA  +G ++D  GRR+  L   ++ SV  LL + + N   L+I R   G+GLGG +P
Sbjct: 65  MAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMP 124

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSV-PSFA 118
              A   E+ P   RG  +  +   +  G      LA  ++    WR L     + P   
Sbjct: 125 NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184

Query: 119 LLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLR 178
           LLL     PES  +L +K R     RI+  +A                            
Sbjct: 185 LLLLMRFLPESIDFLVSK-RPETVRRIVNAIA----------------------PQMQAE 221

Query: 179 DTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS 238
               L   +      +   S F  LF  K  R T+LLW+L+F  +   Y       KL  
Sbjct: 222 AQSALPEQKATQGTKR---SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV 278

Query: 239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL-MFVSAC 297
                 S                  + +   + G I+   + D++G +++ +L +  +  
Sbjct: 279 ELGFSLSLAATG-----------GALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF 327

Query: 298 IFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVG 357
             L+        ++  +        V G  +         YPT+ R TG G A  +G++G
Sbjct: 328 AVLVGSTLFSPTLLLLLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLG 386

Query: 358 GMVCPLVA 365
            ++ P++A
Sbjct: 387 AIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 91/430 (21%), Positives = 162/430 (37%), Gaps = 74/430 (17%)

Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGG-- 57
           L+G+   G + D +GR+KS L   ++  +  LL  F+   ++  L++ R  VG+G+GG  
Sbjct: 60  LIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGIS 119

Query: 58  --VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN---WRWLLAFS 112
             VP++++   E  P   RG          T G +  A +   +    N   WR  L   
Sbjct: 120 VLVPMYIS---EIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQ 176

Query: 113 SVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENE 172
            VP+  LL+     PESPR+L  K +  +A  +L         KL     V  +  +E +
Sbjct: 177 FVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA--------KLRGVSDVDQEIQEEKD 228

Query: 173 ESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA-------NVFS 225
                               +++  +S+  LF  K +R  LL+ V+          N   
Sbjct: 229 SLE---------------RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIF 273

Query: 226 YYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDV--FIASLAELPGLILSAIIVDKI 283
           YY   +  +             L    S   ++ V V  F+ +         +  +VD+ 
Sbjct: 274 YYSPTIFET-------------LGLSDSLLVTIIVGVVNFVFTFI-------AIFLVDRF 313

Query: 284 GRK-------LSMVLMFVSACIFLLPLVFHQSA-VVTTVLLFGVRMCVTGTIT-VATIYA 334
           GR+         M + F+   + LL +   + A +V  V +             V  +  
Sbjct: 314 GRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIV 373

Query: 335 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL 394
            E++P   R     +A++   +   +   +   +  +    +  ++F  + VL I     
Sbjct: 374 SELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVF-LVFAGLLVLFILFVFF 432

Query: 395 FPFETMGREL 404
           F  ET GR L
Sbjct: 433 FVPETKGRTL 442

Length = 449

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 97.4 bits (242), Expect = 9e-22
 Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 27/252 (10%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VP 59
           M++GA+ WG ++D  GR++  L    V       SSF   Y   +  R   G G+GG +P
Sbjct: 215 MMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP 274

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLL---------- 109
           +  +YF EF+    RG  +  L  FW  G I+ A++AW ++    W + +          
Sbjct: 275 IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWR 334

Query: 110 ------AFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN-QTKLPPGIL 162
                 AF  V +   L F    PESPR+     +  +A  IL+ +   N + K  P  +
Sbjct: 335 VFVIVCAFPCVFAIGALTF---MPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV 391

Query: 163 VSDKAIKENEESNLLRDTHMLSMT------RKITDKLKSGFSSFFMLFSRKLIRTTLLLW 216
            S   IK   + + L +    + T       +   +    + +F   F+ ++   T+ L 
Sbjct: 392 FSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLM 451

Query: 217 VLFFANVFSYYG 228
            ++F   F YYG
Sbjct: 452 GVWFTLSFGYYG 463

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 92/429 (21%), Positives = 160/429 (37%), Gaps = 55/429 (12%)

Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSPNYVSLVIFRCFVGVGLGG- 57
            +GA   G +SD +GR+KS L IA++  +  +L    +F+ +   L++ R  +G+G+G  
Sbjct: 85  FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIA 144

Query: 58  ---VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEA---SLAWVVMTRLNWRWLLAF 111
              VP++L+   E  P + RG          T G +      S    +   L WR  L  
Sbjct: 145 SALVPMYLS---EIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201

Query: 112 SSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKEN 171
             +P+  L L     PESPR+L  K R  +A + L ++          G    DK + + 
Sbjct: 202 QLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLR---------GTSGEDKELLDE 252

Query: 172 EESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA--NVFSYYGA 229
            E   ++ +      +     L S          R+L    +L W   F   N   YY  
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIR----RRLFLGVVLQWFQQFTGINAIMYYSP 308

Query: 230 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK--- 286
            +  +   S D+     ++         +    F  +        ++  +VD+ GR+   
Sbjct: 309 TIFENAGVSTDHAFLVSII---------VGAVNFAFT-------FVAIFLVDRFGRRPLL 352

Query: 287 ----LSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCV----TGTITVATIYAPEIY 338
                 M +      I     V   S     V +  + + +     G   V  +   EI+
Sbjct: 353 LIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF 412

Query: 339 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE 398
           P S R  G  +A +   +   +   +   ++ S  +    I F  + VL +     F  E
Sbjct: 413 PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPE 472

Query: 399 TMGRELKDT 407
           T GR L++ 
Sbjct: 473 TKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 72.6 bits (178), Expect = 7e-14
 Identities = 74/365 (20%), Positives = 136/365 (37%), Gaps = 48/365 (13%)

Query: 4   GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFL 62
           GA  +G+  D YGRR   +   ++ S   L   F+P Y+++ I R  +G+G+GG      
Sbjct: 63  GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSA 122

Query: 63  AYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--RLNWRWLLAFSSVPSFALL 120
           AY +E  P   R +    L + +  G +  A +  +V+      WR L   S +P    L
Sbjct: 123 AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182

Query: 121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDT 180
                 PE+  +    A                        LV           + + + 
Sbjct: 183 WLRKNIPEAEDWKEKHAGKA---------------------LVRTMVDILYGGEHRIANI 221

Query: 181 HMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD 240
            M          +       +  F         L+ ++ FAN++S+    LL + L +  
Sbjct: 222 VMTLAA-----AMVQSAGKRWPTF-------VYLVVLVLFANLYSHPIQDLLPTYLKA-- 267

Query: 241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL 300
                       S      + V  +++  + G  +   + D +GR+ + V   ++  + +
Sbjct: 268 --------DLGLSPHTVANI-VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI 318

Query: 301 LPL-VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGM 359
           +P+     +  V  + LF  +M V G   +   +  E +PT  R  G G    LG +GG 
Sbjct: 319 IPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA 378

Query: 360 VCPLV 364
           + P++
Sbjct: 379 LAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-P 59
             LG+   G +SD +GRR+  L   ++ ++  LL +F+ +   L++ R  +G+G G + P
Sbjct: 47  YALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYP 106

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL 119
              A   E+ P   RGR +   SA +  G +    L  ++   L WRWL    ++    L
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166

Query: 120 LLF 122
            L 
Sbjct: 167 ALL 169

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 99/457 (21%), Positives = 176/457 (38%), Gaps = 80/457 (17%)

Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-----NYVSLVIF-RCFVGVGL 55
           L G   +G ++D  GR++ +    ++  +A + S  SP     + ++ + F R ++GVG+
Sbjct: 70  LAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI 129

Query: 56  GG-VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTI------------FEASL------- 95
           GG  P+      EF     RG  M A+ A    G +            F+ SL       
Sbjct: 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEA 189

Query: 96  ----AWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF 151
               + V      WR L+ F +VP+   L F    PE+PRY      T D  + +E+ A 
Sbjct: 190 SCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRY------TADVAKDVEQAA- 242

Query: 152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR----K 207
                           +    +  +  +   +       +  K+ +S FF  F +    K
Sbjct: 243 --------------SDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGK 288

Query: 208 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSS--GDNKCGSKVLHADKSKDNSLYVDVFIA 265
            +  T   W  F  ++ ++YG  L    + S  G +   +     ++    ++  ++ IA
Sbjct: 289 HLLGTAGSW--FLLDI-AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAV-GNLIIA 344

Query: 266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------HQSAVVTTVLLFGV 319
               +PG  ++  +VD IGRK   ++ F    +    L F          +   VL    
Sbjct: 345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFF 404

Query: 320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL----------VAVGLV 369
                G      I   E++PT  R+T  G++++ GK G ++                G  
Sbjct: 405 AN--FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462

Query: 370 TSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD 406
           T   +   + +F +   L I  +LL P ET G+ L++
Sbjct: 463 TGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 92/422 (21%), Positives = 158/422 (37%), Gaps = 56/422 (13%)

Query: 3   LGAYSWGIISDNYGRRKSFLGIAMVTS-----VAGLLSSFSPNYVSLVIFRCFVGVGLGG 57
            G    G + D YGRR     +AMV S     V  L   F+P Y +L I R  +G+G+ G
Sbjct: 70  FGGLLLGAMGDRYGRR-----LAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAG 124

Query: 58  -VPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP- 115
                  Y +E  P   R +    L + ++ G +  A +  +V+    WR L     +P 
Sbjct: 125 EYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184

Query: 116 SFALLLFYGLAPESPRY---LCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENE 172
            FAL L   L PE+  +      KA       IL    +  + ++   +L    A     
Sbjct: 185 IFALWLRKNL-PEAEDWKEKHAGKAPVRTMVDIL----YRGEHRIINILLTLAAAA---- 235

Query: 173 ESNLLRDTHMLSMTRKITDKL---------KSGFSSFFMLFSRKLIRTTLLLWV-LFFAN 222
                           + +            + F SF +  S K   T ++L V + FA 
Sbjct: 236 -------ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAF 288

Query: 223 VFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDK 282
           ++S+    LL + L +         L  D     ++   +F +      G  +   + D 
Sbjct: 289 LYSWPIQALLPTYLKTD--------LGYDPHTVANV---LFFSGFGAAVGCCVGGFLGDW 337

Query: 283 IGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT 340
           +G + + V   + + + ++P+      +  V  +LLF  +M   G   +        + T
Sbjct: 338 LGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT 397

Query: 341 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM 400
             R  G G   ++G +GG + P+  +G + +  L L   L  + F L     LL   +  
Sbjct: 398 EQRAAGLGFTYNVGALGGALAPI--LGALIAQRLDLGTALASLSFSLTFVVILLIGLDMP 455

Query: 401 GR 402
            R
Sbjct: 456 SR 457

Length = 496

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 11/203 (5%)

Query: 195 SGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSK 254
           +       L    L+R  LLL + FF   F YYG +              +         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA------ 213

Query: 255 DNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS-MVLMFVSACIFLLPLVFHQSAVVTT 313
                + + +  L  + G +L  ++ D++GR+   +++  + A + LL L    S  +  
Sbjct: 214 ----GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 314 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH 373
           V L  +   +          A E+ P  AR T  G+ ++ G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 374 LRLAVILFEVVFVLAIASSLLFP 396
                ++   + +LA    LL P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 1/126 (0%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-P 59
             L     G +SD +GRR+  L   ++ ++  LL  F+ +   L++ R   G+G G + P
Sbjct: 45  YALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFP 104

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL 119
              A   ++ P   RGR +  LSA +  G      L  ++ +   WR      ++ +   
Sbjct: 105 AAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLA 164

Query: 120 LLFYGL 125
            +   L
Sbjct: 165 AVLAAL 170

Length = 346

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 258 LYVDVFIASLAELPGLILSAIIVDKIGRKL----SMVLMFVSACIFLLPLVFHQSAVVTT 313
           +Y   F+ +LA LPG I+SA+++DKIGR      SMVL  +S   F L     +SA++  
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISC--FFLSFGNSESAMIAL 654

Query: 314 VLLF-GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC 372
           + LF G+ +     + V T+   E+YP+  R T FG  ++L K   ++  L+    V   
Sbjct: 655 LCLFGGLSIAAWNALDVLTV---ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT 711

Query: 373 HLRLAVILFEVVFVLAIASSL 393
             + A ILF     LA    L
Sbjct: 712 --KAAPILFASA-ALACGGLL 729

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 47/182 (25%)

Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF-----------SPNYV-SLVIFRC 49
           ++G    G  S+ +GRR S    A++  ++ L S++           +  YV   VI+R 
Sbjct: 69  IIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128

Query: 50  FVGVGLGGVPVFLA------YFLEFVPVSHRGRWMVALSAFWTAGTIF------------ 91
                +GG+ V LA      Y  E  P   RG+ +V+ + F     IF            
Sbjct: 129 -----IGGIGVGLASMLSPMYIAEIAPAHIRGK-LVSFNQF---AIIFGQLVVYFVNYFI 179

Query: 92  --EASLAWVVMTRLNWRWLLAFSSVPS--FALLLFYGLAPESPRYLCAKARTVDAHRILE 147
                 +W+      WR++ A  ++P+  F +LL+    PE+PRYL ++ +   A  IL 
Sbjct: 180 ARSGDASWLNT--DGWRYMFASEAIPALLFLMLLY--FVPETPRYLMSRGKQEQAEGILR 235

Query: 148 KM 149
           K+
Sbjct: 236 KI 237

Length = 479

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 68/373 (18%), Positives = 127/373 (34%), Gaps = 75/373 (20%)

Query: 9   GIISDNYGRRKSFLGIAMVTS-VAGLLSSFSPNYVSLVIFRCFVGV--GLGGVPVFLAYF 65
           G +SD    R  FL I ++   +  L   FS +   +       G+  G+G  P      
Sbjct: 51  GSVSDRSNPR-VFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGR-TV 108

Query: 66  LEFVPVSHRGRWMVALSAFWTAG-TIFEASLAWVVMTRLN----WRWLLAFSS----VPS 116
            ++   S RG W+    +FW     +    L  +V+  +     W W+         + S
Sbjct: 109 TKWFSRSERGTWV----SFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVS 164

Query: 117 FALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNL 176
               L    +P+S           +     E                      E +E  L
Sbjct: 165 LICFLLLRDSPQSC-----GLPPAEEMPNEEP-----------------DGDAEKKEEEL 202

Query: 177 LRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL 236
            +        ++I  +        ++L ++        LW +    VF Y   V+ T  L
Sbjct: 203 TK--------KQIFLQ--------YVLLNKV-------LWYISLGYVFVY---VVRTGIL 236

Query: 237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFV 294
                   ++     K K +  +    +  L  L G +L+  + DK+  GR+  + + F+
Sbjct: 237 DWSPLYL-TQEKGFSKEKASWAF---TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFM 292

Query: 295 SACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVAS 351
           +  I  L + +     + ++  + LF +   V G   +  + A E+ P  A  T  G   
Sbjct: 293 ALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVG 352

Query: 352 SLGKVGGMVCPLV 364
               +GG++  L 
Sbjct: 353 FFAYLGGILAGLP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 15/165 (9%)

Query: 203 LFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADK--SKDNSLYV 260
           LF       TLLLW+ +F  +   Y    L + L S         L   +  S+  +  V
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPS---------LLVGQGLSRSQAGLV 260

Query: 261 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR 320
            +   ++    G +L   ++D++  +  ++L++      L  L    S     +  F   
Sbjct: 261 QIAF-NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG 319

Query: 321 MCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVA 365
           + V G  +V    AP  YPT  R TG G A ++G++G M  PL+A
Sbjct: 320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Length = 406

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 275 LSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMC----VTGTITVA 330
           LS  + D+IGR+  +++  V A +  +PL+       +  L F + +             
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333

Query: 331 TIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTS 371
             + PE++PT  R TG  +A +L     G   P +A  LV  
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 9   GIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLE 67
            +++    RR+  LG+  +  V+ LLS+ +P++  L++ R   G+  G    +  A    
Sbjct: 69  ALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR 128

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAP 127
            VP   RGR +  +    T  T+    L   +     WR    F ++   ALL    L  
Sbjct: 129 LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA--TFLAIAVLALLALLLLWK 186

Query: 128 ESPR 131
             P 
Sbjct: 187 LLPP 190

Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 27/134 (20%), Positives = 54/134 (40%)

Query: 262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 321
           +   SL       L+  + D+ GR+  +++  +   + LL L+F  S  +  VL     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 322 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 381
                   A     + +P   R    G+ S+   +G  + PL+   L +    R A ++ 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 382 EVVFVLAIASSLLF 395
            ++ +LA   + L 
Sbjct: 158 AILALLAAVLAALL 171

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/140 (20%), Positives = 54/140 (38%)

Query: 262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRM 321
           V   SL    G +L+  + D+ GR+  ++L  +   +  L L F  S  +  V  F + +
Sbjct: 40  VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGL 99

Query: 322 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 381
                   A     E +P   R    G+ S+   +G ++ PL+   L  S   R   ++ 
Sbjct: 100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159

Query: 382 EVVFVLAIASSLLFPFETMG 401
            ++ +L     L      + 
Sbjct: 160 AILGLLLALLLLFLLRLLLL 179

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFGVRM 321
            A+   + G I+  +  D+IG K +  +  + + +F+ PL      + ++    LFG+  
Sbjct: 274 AAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMA 333

Query: 322 CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF 381
              G   +   +  + +P   R  G G+  +L    G    + A  L     + L   L 
Sbjct: 334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL--GITMGLGAALT 391

Query: 382 EVVFVLAIASSLLFPFETMGR 402
            +V        L+       R
Sbjct: 392 FIVAFWTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 9   GIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLG-GVPVFLAYFLE 67
           G+++D +GR+   L    +  ++  + + S N   L+I R   G G    +    A   +
Sbjct: 19  GLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78

Query: 68  FVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWL---LAFSSVPSFALLLF 122
             P   RG  +  +SA    G +    L  V+   L WR     LA  ++ +F LL F
Sbjct: 79  IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 2/129 (1%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMV-TSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV- 58
            +LGA   G++SD  GRR+  L I ++  ++  LL + +P+   L++    +G GLG   
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 59  PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA 118
           P  L    E  P   RG      + F + G      LA +++    +  +    +  +  
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343

Query: 119 LLLFYGLAP 127
             L   L P
Sbjct: 344 AALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 10/153 (6%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VP 59
           +L GA   G ++D  GR++  +    +  +  L ++ + ++ SL++ R   GVGLGG +P
Sbjct: 63  LLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALP 122

Query: 60  VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV--MTRLNWRWLLAF---SSV 114
             +A   E V    RG    A+S  +  G  F  +LA V+  +   +  W   F      
Sbjct: 123 NLIALTSEAVGPRLRGT---AVSLMY-CGVPFGGALASVIGVLAAGDAAWRHIFYVGGVG 178

Query: 115 PSFALLLFYGLAPESPRYLCAKARTVDAHRILE 147
           P   + L     PES  +  A         +L 
Sbjct: 179 PLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 7/156 (4%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-P 59
            ++G +  G + D +G RK+     ++  V   L +F+  YVSL I R  +G       P
Sbjct: 42  YVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFP 101

Query: 60  VFLAYFLEFVPVSHRGRWM-VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP--- 115
             +     + P S R   + +  SA    G I    + W+++   +W+W      V    
Sbjct: 102 GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF-SWQWAFIIEGVLGII 160

Query: 116 -SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMA 150
                L F    P+  ++L  + + +    +L +  
Sbjct: 161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQ 196

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK15075	434	citrate-proton symporter; Provisional	99.98
PRK12307	426	putative sialic acid transporter; Provisional	99.98
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PLN00028	476	nitrate transmembrane transporter; Provisional	99.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.95
PRK03699	394	putative transporter; Provisional	99.95
PRK12382	392	putative transporter; Provisional	99.95
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.94
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.94
PRK10504	471	putative transporter; Provisional	99.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
PRK11010	491	ampG muropeptide transporter; Validated	99.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
KOG2532	466	consensus Permease of the major facilitator superf	99.93
PRK10091	382	MFS transport protein AraJ; Provisional	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.92
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.92
PRK11043	401	putative transporter; Provisional	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.91
PRK03633	381	putative MFS family transporter protein; Provision	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.9
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.9
KOG2533	495	consensus Permease of the major facilitator superf	99.9
PRK11902	402	ampG muropeptide transporter; Reviewed	99.89
PRK10054	395	putative transporter; Provisional	99.89
PRK10133	438	L-fucose transporter; Provisional	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.88
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.88
PRK09528	420	lacY galactoside permease; Reviewed	99.88
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.87
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.85
KOG2615	451	consensus Permease of the major facilitator superf	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.85
PTZ00207	591	hypothetical protein; Provisional	99.82
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.82
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.81
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.81
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.81
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.79
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.78
TIGR00805	633	oat sodium-independent organic anion transporter.	99.77
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.72
PRK09669	444	putative symporter YagG; Provisional	99.7
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.7
PRK10429	473	melibiose:sodium symporter; Provisional	99.64
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.62
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.61
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.61
PF13347	428	MFS_2: MFS/sugar transport protein	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.6
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.58
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.58
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.55
PRK11462	460	putative transporter; Provisional	99.55
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.54
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.49
PRK09848	448	glucuronide transporter; Provisional	99.49
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.49
COG2211	467	MelB Na+/melibiose symporter and related transport	99.43
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.42
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.28
PRK09528	420	lacY galactoside permease; Reviewed	99.27
KOG2563	480	consensus Permease of the major facilitator superf	99.26
PRK05122	399	major facilitator superfamily transporter; Provisi	99.25
PRK15011	393	sugar efflux transporter B; Provisional	99.23
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.23
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.21
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.2
PLN00028	476	nitrate transmembrane transporter; Provisional	99.2
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.19
TIGR00895	398	2A0115 benzoate transport.	99.19
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.18
PRK10054	395	putative transporter; Provisional	99.18
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.17
TIGR00893	399	2A0114 d-galactonate transporter.	99.16
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.15
TIGR00891	405	2A0112 putative sialic acid transporter.	99.15
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.15
PRK12382	392	putative transporter; Provisional	99.15
PRK09874	408	drug efflux system protein MdtG; Provisional	99.14
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.1
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.09
TIGR00900	365	2A0121 H+ Antiporter protein.	99.09
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.09
PRK03893	496	putative sialic acid transporter; Provisional	99.09
PRK03545	390	putative arabinose transporter; Provisional	99.09
PRK11663	434	regulatory protein UhpC; Provisional	99.09
PRK10504	471	putative transporter; Provisional	99.09
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.09
PRK12307	426	putative sialic acid transporter; Provisional	99.08
PRK03699	394	putative transporter; Provisional	99.06
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.05
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.05
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.04
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.03
PRK10091	382	MFS transport protein AraJ; Provisional	99.02
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.01
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.01
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.01
PRK11043	401	putative transporter; Provisional	99.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.0
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.98
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.97
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.97
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.95
PRK03633	381	putative MFS family transporter protein; Provision	98.94
TIGR00898	505	2A0119 cation transport protein.	98.94
PRK09952	438	shikimate transporter; Provisional	98.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.92
PRK15075	434	citrate-proton symporter; Provisional	98.92
KOG2615	451	consensus Permease of the major facilitator superf	98.91
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.88
PRK10489	417	enterobactin exporter EntS; Provisional	98.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.84
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.84
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.76
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.74
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.74
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.72
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.71
PRK09705	393	cynX putative cyanate transporter; Provisional	98.71
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.7
PRK11010	491	ampG muropeptide transporter; Validated	98.68
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.66
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.65
TIGR00901	356	2A0125 AmpG-related permease.	98.63
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.62
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.58
COG0477	338	ProP Permeases of the major facilitator superfamil	98.56
KOG0254	513	consensus Predicted transporter (major facilitator	98.56
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.55
PTZ00207	591	hypothetical protein; Provisional	98.54
PRK10133	438	L-fucose transporter; Provisional	98.53
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.51
KOG0569	485	consensus Permease of the major facilitator superf	98.49
PRK09848	448	glucuronide transporter; Provisional	98.46
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.43
TIGR00805	633	oat sodium-independent organic anion transporter.	98.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.42
KOG2532	466	consensus Permease of the major facilitator superf	98.41
PRK11902	402	ampG muropeptide transporter; Reviewed	98.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.34
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.34
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.23
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.23
KOG3626	735	consensus Organic anion transporter [Secondary met	98.21
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.2
PRK09669	444	putative symporter YagG; Provisional	98.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.17
PRK10429	473	melibiose:sodium symporter; Provisional	98.16
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.14
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.14
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.11
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.1
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.03
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.99
PF13347	428	MFS_2: MFS/sugar transport protein	97.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.94
KOG2533	495	consensus Permease of the major facilitator superf	97.85
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.79
KOG3762	618	consensus Predicted transporter [General function	97.76
COG2211	467	MelB Na+/melibiose symporter and related transport	97.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.68
KOG3810	433	consensus Micronutrient transporters (folate trans	97.62
KOG3762	618	consensus Predicted transporter [General function	97.6
PRK11462	460	putative transporter; Provisional	97.55
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.12
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.05
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.03
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.02
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.98
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.9
KOG0637	498	consensus Sucrose transporter and related proteins	96.87
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.84
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.78
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.61
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.47
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.41
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.11
KOG2563	480	consensus Permease of the major facilitator superf	95.58
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	95.57
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.21
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.12
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.12
COG0477	338	ProP Permeases of the major facilitator superfamil	94.97
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.68
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.47
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.59
PF12832	77	MFS_1_like: MFS_1 like family	92.4
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	92.19
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.81
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.73
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	88.55
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	87.38
PF12832	77	MFS_1_like: MFS_1 like family	86.53
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	86.33
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	83.89
KOG3098	461	consensus Uncharacterized conserved protein [Funct	83.87
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	83.11

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.7e-52  Score=364.51  Aligned_cols=393  Identities=40%  Similarity=0.670  Sum_probs=327.8

Q ss_pred             CccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHH
Q 015075            1 MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         1 ~~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      |++|+..||.++|++|||+.+.++.+..++...+.+++||+.+++++|.+.|+|.|+.|...++-.|.-|..+|+..+-.
T Consensus       126 mllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~  205 (528)
T KOG0253|consen  126 MLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVM  205 (528)
T ss_pred             hhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhH
Confidence            67899999999999999999999999999999999999999999999999999999988888888999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      . ..|.+|.++...+++..+..+||||.....++|..+.....+++||||||...+|+.++|.+.+++++..|++..|.+
T Consensus       206 ~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplg  284 (528)
T KOG0253|consen  206 S-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLG  284 (528)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcc
Confidence            7 999999999999999999999999998888899888888999999999999999999999999999999999988876


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD  240 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  240 (413)
                      ........+.+++....++.+.       .. -++.-.....+++++.+++++.+|..++.|.+.||+..+++..+.+..
T Consensus       285 vl~~s~~~~~e~e~~~~~~~~~-------~a-~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsg  356 (528)
T KOG0253|consen  285 VLESSAIDRQEQEESDLDDSKS-------SA-AKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSG  356 (528)
T ss_pred             eeeeehhhhhhhhhhchhhhhh-------cc-ccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            5543322222221111111100       00 112223456688999999999999999999999999999888776544


Q ss_pred             CccCccccc------c---CCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHH
Q 015075          241 NKCGSKVLH------A---DKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV  311 (413)
Q Consensus       241 ~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  311 (413)
                      +.|......      -   -......-|.+.++.+++..||.++.++++||+|||+.+..+++..+++.+++....+...
T Consensus       357 d~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~  436 (528)
T KOG0253|consen  357 DACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNA  436 (528)
T ss_pred             CccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcch
Confidence            433222110      0   0111223477888999999999999999999999999999999999998888776554444


Q ss_pred             HHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 015075          312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  391 (413)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
                      ...+++....|..+.+.+.|+|.+|++|+..|+++.|.|.+++++|++++|.++  +....+.+.+..+|+.+++++.+.
T Consensus       437 ~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  437 YTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             hHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHH
Confidence            567788888999999999999999999999999999999999999999999987  444456678899999999999999


Q ss_pred             hhcccccccCcch
Q 015075          392 SLLFPFETMGREL  404 (413)
Q Consensus       392 ~~~~~~et~~~~l  404 (413)
                      +.++|-|||||.+
T Consensus       515 vcffPiEtkGR~l  527 (528)
T KOG0253|consen  515 VCFFPIETKGRSL  527 (528)
T ss_pred             heeeeeccCCCCC
Confidence            9999999999986

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=5.9e-44  Score=355.32  Aligned_cols=401  Identities=24%  Similarity=0.419  Sum_probs=289.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|++++|+++||+|||++++++++++++++++++++++++.++++|+++|++.|+. +...++++|++|+++||+..++
T Consensus       216 iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~  295 (742)
T TIGR01299       216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSW  295 (742)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999875 7788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-------------CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHH
Q 015075           81 LSAFWTAGTIFEASLAWVVMTR-------------LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILE  147 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~-------------~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~  147 (413)
                      .+.++.+|.++++.+++.+...             .+||+++++.++|.++.++..+++||||+|+.+++|.+++.++++
T Consensus       296 ~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~  375 (742)
T TIGR01299       296 LCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILK  375 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHH
Confidence            9999999999999887766532             369999999999988888888899999999999999999999999


Q ss_pred             HHHHHcCCCC--CCCccccchhhhhhhhccccccc-cccch----hhhcchhhccccchhhhhccchhhhHHHHHHHHHH
Q 015075          148 KMAFVNQTKL--PPGILVSDKAIKENEESNLLRDT-HMLSM----TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF  220 (413)
Q Consensus       148 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (413)
                      +++..|.+..  +......++.....+..+..+.+ .....    ...........+..++.+++++++++++.+|..++
T Consensus       376 ~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf  455 (742)
T TIGR01299       376 LIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWF  455 (742)
T ss_pred             HHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHH
Confidence            9887664321  11000000000000000000000 00000    00000011122334667889999999999999999


Q ss_pred             HHHHHhhhHHhhhhhccCCC------------C--------------------------------------------ccC
Q 015075          221 ANVFSYYGAVLLTSKLSSGD------------N--------------------------------------------KCG  244 (413)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~~------------~--------------------------------------------~~~  244 (413)
                      +..+.||+...+.+.+....            +                                            .|.
T Consensus       456 ~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (742)
T TIGR01299       456 TLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECT  535 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccc
Confidence            99999999887766431100            0                                            000


Q ss_pred             cccc--------------------------------------------cc----CCCCChhHHHHHHHHHhhhhhHHHHH
Q 015075          245 SKVL--------------------------------------------HA----DKSKDNSLYVDVFIASLAELPGLILS  276 (413)
Q Consensus       245 ~~~~--------------------------------------------~~----~~~~~~~~~~~~~~~~~~~~~g~~~~  276 (413)
                      -+.+                                            +.    ........+...++.+++.++|.++.
T Consensus       536 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~  615 (742)
T TIGR01299       536 FDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVS  615 (742)
T ss_pred             eeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000                                            00    00000123455667778889999999


Q ss_pred             HHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh
Q 015075          277 AIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV  356 (413)
Q Consensus       277 g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~  356 (413)
                      |+++||+|||++++.+.++.+++++.+.+..+....+++.++..++..+.++..+++++|++|++.|+++.|++++++++
T Consensus       616 g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl  695 (742)
T TIGR01299       616 ALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA  695 (742)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999988888777776665554433332333333334444556677889999999999999999999999999


Q ss_pred             hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 015075          357 GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  404 (413)
Q Consensus       357 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l  404 (413)
                      |++++|++.+.+.+. +...++++++++.+++.++.+++ |||++++|
T Consensus       696 Gaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       696 AAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence            999999998877664 34567777777777776766655 89999875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.8e-42  Score=339.15  Aligned_cols=375  Identities=24%  Similarity=0.375  Sum_probs=254.6

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCc
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHR   74 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~R   74 (413)
                      ++|++++|+++||+|||+++..+.+++.+++++++++++      ++.++++|+++|++.|+. +....|+.|++|+++|
T Consensus        70 ~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~R  149 (502)
T TIGR00887        70 LAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWR  149 (502)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhH
Confidence            478899999999999999999999999999999999876      789999999999999975 7778999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------CCChHHHHHHhhHHHHHHHHHhhcCCCCch
Q 015075           75 GRWMVALSAFWTAGTIFEASLAWVVMT-----------------------RLNWRWLLAFSSVPSFALLLFYGLAPESPR  131 (413)
Q Consensus        75 g~~~~~~~~~~~~G~~~~~~l~~~l~~-----------------------~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~  131 (413)
                      |+.+++.+....+|.++++.++..+..                       .++||++|.+.++|+++..+.++++||||+
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999888765431                       247999999999999888888889999999


Q ss_pred             HHhhccChHH-HHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc----c
Q 015075          132 YLCAKARTVD-AHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS----R  206 (413)
Q Consensus       132 ~l~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  206 (413)
                      |+.+|+|.+| +.+.+++....+   .++      +..+.++.++   +.   +       ..+   .+++++++    +
T Consensus       230 ~l~~~~~~~~~a~~~~~~~~~~~---~~~------~~~~~~~~~~---~~---~-------~~~---~~~~~l~~~~~~~  284 (502)
T TIGR00887       230 YTADVAKDVEQAASDMSAVLQVK---IEA------EPDEVEKAST---AV---E-------VPK---ASWSDFFTHFFKW  284 (502)
T ss_pred             HHHHhCcchHHHHHHHHHHhccc---ccc------Ccccccchhc---cc---c-------chh---hhHHHHHHHHhhh
Confidence            9999888753 555555443211   000      0000000000   00   0       000   12333332    2


Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCCh---------hHHHHHHHHHhhhhhHHHHHH
Q 015075          207 KLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN---------SLYVDVFIASLAELPGLILSA  277 (413)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~g  277 (413)
                      +..+..+..+..++.+.+.+|+...+.+.+...        .+....+.+         .......+..+..+++.++.+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  356 (502)
T TIGR00887       285 RHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--------IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV  356 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccccHHHHHH--------HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555566666654433222111        111111111         011123344456677889999


Q ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHhc--c--hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhh
Q 015075          278 IIVDKIGRKLSMVLMFVSACIFLLPLVFH--Q--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL  353 (413)
Q Consensus       278 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  353 (413)
                      +++||+|||+.++.+..+..+.+..+...  .  +........+...++..+..++.+.+.+|++|++.|+++.|+++.+
T Consensus       357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence            99999999998877666555443333221  1  1111111111122233455667888999999999999999999999


Q ss_pred             hhhhHhHHHHHHHHHhhcc----------chhHHHHHHHHHHHHHHHHhhcccccccCcchhhhhhh
Q 015075          354 GKVGGMVCPLVAVGLVTSC----------HLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDA  410 (413)
Q Consensus       354 ~~~~~~~~p~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~  410 (413)
                      ++++++++|.+.+++.+..          +...++++++++++++.+.. ++.|||++|++||.++|
T Consensus       437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       437 GKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE  502 (502)
T ss_pred             hhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence            9999999999999887732          22356777888777776654 56689999999887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.6e-42  Score=321.35  Aligned_cols=373  Identities=21%  Similarity=0.338  Sum_probs=273.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF---SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~---a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++|+++.|+++||+|||..+.++.++..++.++..+   ++++++++++|++.|+..|.. ....-|+.|.+|++.||..
T Consensus        74 ~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~  153 (485)
T KOG0569|consen   74 MIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGAL  153 (485)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHH
Confidence            478999999999999999999999998888877665   568999999999999998865 4556789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhh-ccChHHHHHHHHHHHHHcC
Q 015075           78 MVALSAFWTAGTIFEASLAWV--VMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCA-KARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~--l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~-~~~~~~a~~~~~~~~~~~~  154 (413)
                      ..+.+.+..+|.+++..++..  +.+...|++.+....+|.++..+...++|||||||.. |+|.+||+|.++++++.++
T Consensus       154 g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~  233 (485)
T KOG0569|consen  154 GTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKED  233 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc
Confidence            999999999999998776654  3356679999999999999999999999999999988 8999999999988875432


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHHHHHH------Hhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVF------SYY  227 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~  227 (413)
                      .+.       +.+.+.++.++    +          +..++...+++++++ ++.++...+...+.+.+++      .+|
T Consensus       234 ~~~-------~~e~~~~e~~~----~----------~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Y  292 (485)
T KOG0569|consen  234 VEA-------EIEEMLREIEE----E----------ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFY  292 (485)
T ss_pred             chh-------HHHHHHHHHHH----h----------ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHH
Confidence            110       00000011000    0          000112234455444 4555554444444444333      344


Q ss_pred             hHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh--
Q 015075          228 GAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--  305 (413)
Q Consensus       228 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--  305 (413)
                      ...++.+.-             .  ..+...+ .....+....+.++++.+++||.|||+.++.++..+.+..+.+..  
T Consensus       293 st~i~~~aG-------------~--~~~~a~~-an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~  356 (485)
T KOG0569|consen  293 STSIFKTAG-------------F--TPEEAQY-ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL  356 (485)
T ss_pred             HHHHHHHcC-------------C--CHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            444333211             1  1111222 234556677889999999999999999999887777655544432  


Q ss_pred             --cchh--HH----HHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHH
Q 015075          306 --HQSA--VV----TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA  377 (413)
Q Consensus       306 --~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~  377 (413)
                        .+..  +.    ....+.....+..|..+++|.+.+|++|++.|+.+.+++..+.++++++..+..+.+.+..+. ..
T Consensus       357 ~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~  435 (485)
T KOG0569|consen  357 FLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YV  435 (485)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hh
Confidence              1111  11    122222233455678899999999999999999999999999999999998888888777766 67


Q ss_pred             HHHHHHHHHHHHHHhhcccccccCcchhhhhhhhc
Q 015075          378 VILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  412 (413)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~~~  412 (413)
                      +++|.+.+++..+..++++||||||+.+|+.++.|
T Consensus       436 filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  436 FILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             hHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            88999999999999999999999999999998866

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=5.5e-40  Score=322.67  Aligned_cols=361  Identities=34%  Similarity=0.634  Sum_probs=271.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|++++|+++||+|||++++.+.++.+++.+++++++|++.++++|++.|++.|+. +....++.|++|+++|++..++
T Consensus       141 ~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~  220 (505)
T TIGR00898       141 LLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTL  220 (505)
T ss_pred             HHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999884 7778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      .+.++.+|.++++.+++.+.   +||+.|++.+++.++..+..+++||||+|+..+++.+++++.+++.++.|+.+.+++
T Consensus       221 ~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  297 (505)
T TIGR00898       221 IQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE  297 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999998887764   499999999999887777778899999999999999999999988887765432211


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (413)
                      .      .+.+.+++    .+          ..+ ....++.++ +++.++..+..+..++...+.||+..++.+.+.  
T Consensus       298 ~------~~~~~~~~----~~----------~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  354 (505)
T TIGR00898       298 V------LSLSLEKD----LS----------SSK-KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--  354 (505)
T ss_pred             H------Hhhhhhhh----hh----------hcc-CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC--
Confidence            0      00000000    00          000 012334444 345555555666666666667766554432211  


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA--VVTTVLLF  317 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  317 (413)
                                      .+.+....+.++..+++.++.+++.||+|||+.+..+.++.++.++.+....+.  .......+
T Consensus       355 ----------------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  418 (505)
T TIGR00898       355 ----------------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAV  418 (505)
T ss_pred             ----------------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence                            123455566777888999999999999999999888777766655544432222  22223333


Q ss_pred             HHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Q 015075          318 GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  397 (413)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (413)
                      ...++..+.++..+.+.+|++|++.|+++.|+.+.++++|++++|.+.+ + +..+...++++++++.+++.+..++ .|
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lp  495 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LP  495 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-Cc
Confidence            3344445556778889999999999999999999999999999999877 3 4445566788888888777666655 57


Q ss_pred             cccCcchhhh
Q 015075          398 ETMGRELKDT  407 (413)
Q Consensus       398 et~~~~l~~~  407 (413)
                      ||++++++|+
T Consensus       496 et~~~~l~~t  505 (505)
T TIGR00898       496 ETKGVPLPET  505 (505)
T ss_pred             CCCCCCCCCC
Confidence            9999999874

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=7e-38  Score=308.44  Aligned_cols=372  Identities=29%  Similarity=0.439  Sum_probs=276.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|++++|+++||+|||++++.++++..++.+++++++|++.++++|+++|++.++. .+...++.|+.++++|+.+..+
T Consensus       132 ~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~  211 (521)
T KOG0255|consen  132 LVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL  211 (521)
T ss_pred             HHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH
Confidence            589999999999999999999999999999999999999999999999999988775 6778889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                       ......|..++++.++.+..  +||+.+++..+|.++.++.+++.||||||+..++|.+++++.+++.++.|+++....
T Consensus       212 -~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~  288 (521)
T KOG0255|consen  212 -GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVK  288 (521)
T ss_pred             -HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcH
Confidence             44444555555555555554  999999999999988777777778999999999999999999999998874332211


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (413)
                      .     ..+...  ...++          ......+...+.+++. ++.++..+..++.++.....||+..+....+   
T Consensus       289 ~-----~~~~~~--~~~~~----------~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l---  348 (521)
T KOG0255|consen  289 E-----LLRLEL--LLRPL----------KLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL---  348 (521)
T ss_pred             H-----HHHHHH--HhhHh----------hhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc---
Confidence            0     000000  00000          0000111123444443 4477777777888887888888877655432   


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc--chh-HHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSA-VVTTVLL  316 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~  316 (413)
                                     ..+.+.+..+.+....++....+...|+.|||.....+.+...+.++.....  ... .......
T Consensus       349 ---------------g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (521)
T KOG0255|consen  349 ---------------GGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILP  413 (521)
T ss_pred             ---------------CchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence                           2345666777777888898999999999999999888887776665554432  121 1222333


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (413)
                      ....++....+...+.+.+|++|+..|+++.+.++.+++++++++|.+...... ......+.+++....+.++...++.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~l  492 (521)
T KOG0255|consen  414 LLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLL  492 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcC
Confidence            333444445556669999999999999999999999999999999987643322 3333444446777777777787778


Q ss_pred             ccccCcchhhhhhhhc
Q 015075          397 FETMGRELKDTVDAIE  412 (413)
Q Consensus       397 ~et~~~~l~~~~~~~~  412 (413)
                      |||++++++|+.+|.|
T Consensus       493 pet~~~~l~~t~~~~~  508 (521)
T KOG0255|consen  493 PETKGKPLPGTLLDAE  508 (521)
T ss_pred             cccCCCCCchhHHHHH
Confidence            9999999999998877

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2.2e-37  Score=303.41  Aligned_cols=378  Identities=19%  Similarity=0.300  Sum_probs=265.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|+++.|+++|++|||+++..+.+++.++++++++++|+.+++++|+++|+|.|+. .....|++|..|++.||...+.
T Consensus       103 ~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~  182 (513)
T KOG0254|consen  103 LVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSL  182 (513)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999986 4567899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~-~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      .+....+|..++..++....+. ++||..+.+..+|+++..+..+++||||+|+.++++.+++++.+++++..++.+   
T Consensus       183 ~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---  259 (513)
T KOG0254|consen  183 YQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---  259 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---
Confidence            9999999999986666554332 589999999999998887778999999999999999999999999987643111   


Q ss_pred             CccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHH-hhhHHhhhhhccC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFS-YYGAVLLTSKLSS  238 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~  238 (413)
                            .+.+.++.+..  ...  +     . ........+.+++.++..++......+...++++ +....++.+.+..
T Consensus       260 ------~~~~~~~~~~~--~~~--~-----~-~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  260 ------VEVELELLKIK--LLV--E-----A-EVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             ------hHHHHHHHHHH--HHH--h-----h-hcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence                  11111111100  000  0     0 0000001244455555555555444433333332 2222222222211


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh----cch------
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQS------  308 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~------  308 (413)
                      .           ...++.. .....+.++...++++++.++.||+|||+.++.+.....+..+.+..    ...      
T Consensus       324 ~-----------~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~  391 (513)
T KOG0254|consen  324 S-----------AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSK  391 (513)
T ss_pred             h-----------cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccc
Confidence            1           1111111 34456667777888899999999999999998877665554443321    110      


Q ss_pred             --hHHH-HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHH
Q 015075          309 --AVVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVF  385 (413)
Q Consensus       309 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~  385 (413)
                        .+.. ....+....+..+..+++|.+.+|++|.+.|+.+.+++..++++.++........+....+....+.+|...+
T Consensus       392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~  471 (513)
T KOG0254|consen  392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGIC  471 (513)
T ss_pred             chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence              1112 2222333345566778899999999999999999999999999988877666555544432245677777777


Q ss_pred             HHHHH-HhhcccccccCcchhhhhhh
Q 015075          386 VLAIA-SSLLFPFETMGRELKDTVDA  410 (413)
Q Consensus       386 ~~~~~-~~~~~~~et~~~~l~~~~~~  410 (413)
                      .+..+ .++++.||||++++||.++.
T Consensus       472 ~~~~~~fv~~~~pETkg~sleei~~~  497 (513)
T KOG0254|consen  472 LLSLIIFVFFFVPETKGLTLEEINEL  497 (513)
T ss_pred             HHHHHHHheEEcccCCCCcHHHHHHH
Confidence            77767 78888999999999998864

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=4.9e-44  Score=346.53  Aligned_cols=372  Identities=26%  Similarity=0.468  Sum_probs=259.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP---NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~---~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++|++++|+++||+|||+++..+.++..+++++.++++   |++.++++|+++|++.|+. +....|+.|..|+++||+.
T Consensus        60 ~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~  139 (451)
T PF00083_consen   60 IVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFL  139 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999999999999999999999   9999999999999999985 6778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTR---LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~---~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      ..+.+.++.+|.+++..++....+.   .+||+.+++..+|.++..+...++||||+|+.+|+|.+||++.+++.++.+.
T Consensus       140 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~  219 (451)
T PF00083_consen  140 SSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI  219 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccc
Confidence            9999999999999888777665443   4599999999999988877888999999999999999999998877543311


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccc-hhhhHHHHHHHHHHHHHHHh-hhHHhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSR-KLIRTTLLLWVLFFANVFSY-YGAVLL  232 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  232 (413)
                      ++.           |.+++.+..++.+          +.+   .++++++++ +++++......+.....+.. +....+
T Consensus       220 ~~~-----------~~~~~~~~~~~~~----------~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  275 (451)
T PF00083_consen  220 EDE-----------EIEEIKAEKKESQ----------ESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYY  275 (451)
T ss_pred             ccc-----------ccccccccccccc----------ccc---eeeeecccccccccccccccccccccccccccccccc
Confidence            110           0000000000000          000   122333332 22222222222222222221 112222


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-----hcc
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-----FHQ  307 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-----~~~  307 (413)
                      .+.+....        +...   .  .....+..+...++.+++.+++||+|||+..+.+...+.++...+.     ...
T Consensus       276 ~~~i~~~~--------~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~  342 (451)
T PF00083_consen  276 SPSIFENA--------GISN---S--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS  342 (451)
T ss_pred             cccccccc--------cccc---c--cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            22111110        0000   1  1223344555667778888999999999888777766555444332     111


Q ss_pred             h----hHHHHHHHHHH-HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHH
Q 015075          308 S----AVVTTVLLFGV-RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE  382 (413)
Q Consensus       308 ~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~  382 (413)
                      +    ......+.... ..+..+..+..+.+.+|++|++.|+++.|+++.+++++++++|.+.+.+.+..+....+.++.
T Consensus       343 ~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~  422 (451)
T PF00083_consen  343 SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFA  422 (451)
T ss_pred             cccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhH
Confidence            1    11111112111 223335667788999999999999999999999999999999988877776655456778888


Q ss_pred             HHHHHHHHHhhcccccccCcchhhhhhh
Q 015075          383 VVFVLAIASSLLFPFETMGRELKDTVDA  410 (413)
Q Consensus       383 ~~~~~~~~~~~~~~~et~~~~l~~~~~~  410 (413)
                      ++++++.++.++++||||+|++||++++
T Consensus       423 ~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  423 GVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             HHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            8888888889999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.1e-36  Score=295.28  Aligned_cols=347  Identities=20%  Similarity=0.260  Sum_probs=222.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHH--------HHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVS--------LVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~--------l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .+|++++|+++||+|||+++..++++++++++++++++|+++        ++++|+++|++.|+. +...+++.|++|++
T Consensus        71 ~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~  150 (490)
T PRK10642         71 PLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR  150 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC
Confidence            378999999999999999999999999999999999999975        899999999999986 67789999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHR  144 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~  144 (413)
                      +||+..++.+.+..+|..+++.+...+.        ..+|||+.|++.+++.++.++++..+||||+|..++++.++.. 
T Consensus       151 ~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-  229 (490)
T PRK10642        151 KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-  229 (490)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-
Confidence            9999999999888889888876654432        3689999999987766666666778999999864332111000 


Q ss_pred             HHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHH
Q 015075          145 ILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF  224 (413)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (413)
                               ++                ...    +.            .+   ..++.++++ ..+.....+...+....
T Consensus       230 ---------~~----------------~~~----~~------------~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~  264 (490)
T PRK10642        230 ---------RE----------------GLQ----DG------------PK---VSFKEIATK-HWRSLLTCIGLVIATNV  264 (490)
T ss_pred             ---------cc----------------ccc----cc------------cc---CCHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence                     00                000    00            00   011222222 12222222223333344


Q ss_pred             HhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH-H
Q 015075          225 SYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP-L  303 (413)
Q Consensus       225 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~-~  303 (413)
                      .+|+...+.+.+..       ..++.+..   ..........++.+++.++.|+++||+|||+.+..+.+...+..+. +
T Consensus       265 ~~~~~~~~~p~~l~-------~~~g~s~~---~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        265 TYYMLLTYMPSYLS-------HNLHYSED---HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHH-------HhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            45544333322211       01111111   1112233345556778888999999999999877665433222111 1


Q ss_pred             H-h-cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHH
Q 015075          304 V-F-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVIL  380 (413)
Q Consensus       304 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~  380 (413)
                      . . ..+........+...++.....+....+.+|++|++.|+++.|+.+.++++++.++|.+.+++.+..+ ...++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~  414 (490)
T PRK10642        335 ILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY  414 (490)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            1 1 22222222222222222233345556677899999999999999999999989999999988876543 2344455


Q ss_pred             HHHHHHHHHHHhhcccccccCcchh
Q 015075          381 FEVVFVLAIASSLLFPFETMGRELK  405 (413)
Q Consensus       381 ~~~~~~~~~~~~~~~~~et~~~~l~  405 (413)
                      ..++++++.+..++ .|||+++.++
T Consensus       415 ~~~~~~i~~~~~~~-~pes~~~~~~  438 (490)
T PRK10642        415 LMVVAVIGLITGVT-MKETANRPLK  438 (490)
T ss_pred             HHHHHHHHHHHHHH-hccccCCCCC
Confidence            55555555555554 5899887664

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=5.6e-36  Score=292.44  Aligned_cols=373  Identities=19%  Similarity=0.242  Sum_probs=241.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc------------ccHHHHHHHHHHhhhcccch-hHHHHHHHhh
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS------------PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEF   68 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a------------~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~   68 (413)
                      ++|++++|+++||+|||+++..+.+++.++.++++++            +++..++++|+++|++.|+. +...++++|+
T Consensus        69 ~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~  148 (479)
T PRK10077         69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEI  148 (479)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhh
Confidence            4788999999999999999999999999998888763            22567899999999999985 7778899999


Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChH
Q 015075           69 VPVSHRGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTV  140 (413)
Q Consensus        69 ~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~  140 (413)
                      +|+++||+.+++.+.+..+|.++++.+++.+.        +.+|||+.|++.+++.++..+..+++||+|+|+.++++.+
T Consensus       149 ~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~  228 (479)
T PRK10077        149 APAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQE  228 (479)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHH
Confidence            99999999999999999999999887766543        3579999999998888777667788999999998888887


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH
Q 015075          141 DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF  220 (413)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (413)
                      ++++..++....+           +.+.+.++.++..+         .  ++.+     .+..+...............+
T Consensus       229 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---------~--~~~~-----~~~~~~~~~~~~~~~~~~~~~  281 (479)
T PRK10077        229 QAEGILRKIMGNT-----------LATQALQEIKHSLD---------H--GRKT-----GGKLLMFGVGVIVIGVMLSVF  281 (479)
T ss_pred             HHHHHHHHHcCCh-----------hHHHHHHHHHHHHH---------H--hhhh-----hhhhcchhHHHHHHHHHHHHH
Confidence            7766655542110           00000000000000         0  0000     000010000000000011111


Q ss_pred             HHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Q 015075          221 ANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL  300 (413)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  300 (413)
                      .+...++....+.+.+...        .+....   .........++..+++.++.++++||+|||+.++.+.+...+..
T Consensus       282 ~~~~~~~~~~~~~p~i~~~--------~g~~~~---~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~  350 (479)
T PRK10077        282 QQFVGINVVLYYAPEIFKT--------LGASTD---IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM  350 (479)
T ss_pred             HHHhChhHHHHHHHHHHHH--------cCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHH
Confidence            1111111211121111100        111111   11223344566677889999999999999998887776655443


Q ss_pred             HHHHh--cch--hHHHHHHHHHHHH-HhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh------
Q 015075          301 LPLVF--HQS--AVVTTVLLFGVRM-CVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV------  369 (413)
Q Consensus       301 ~~~~~--~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~------  369 (413)
                      +.+..  ..+  ............. +..+..+..+.+.+|++|++.|+++.|+++.++++++++++.+.+.+.      
T Consensus       351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~  430 (479)
T PRK10077        351 FSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV  430 (479)
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh
Confidence            33321  111  1111111111111 112233567889999999999999999999999999999987766443      


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhhhhhc
Q 015075          370 TSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  412 (413)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~~~  412 (413)
                      +..+....+++++++++++.+..+++.||||+|++||.+++.+
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  473 (479)
T PRK10077        431 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE  473 (479)
T ss_pred             hhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence            3444556777888887888888888889999999998776643

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-37  Score=279.52  Aligned_cols=376  Identities=23%  Similarity=0.347  Sum_probs=260.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc-------HHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN-------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH   73 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~-------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~   73 (413)
                      ++||+++|+++||+|||+++...+++..++++++++...       ..++.+.|++.|+|.|+. |...+..+|.+-.+.
T Consensus        98 i~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~  177 (538)
T KOG0252|consen   98 IFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT  177 (538)
T ss_pred             HHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence            579999999999999999999999999999998877542       578999999999999994 888888999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhc-------C--------CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhcc-
Q 015075           74 RGRWMVALSAFWTAGTIFEASLAWVVMT-------R--------LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKA-  137 (413)
Q Consensus        74 Rg~~~~~~~~~~~~G~~~~~~l~~~l~~-------~--------~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~-  137 (413)
                      ||...+.......+|.+.|.+++..+..       .        .=||..|-++.+|++..+..++.+|||++|-.... 
T Consensus       178 RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~  257 (538)
T KOG0252|consen  178 RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSK  257 (538)
T ss_pred             ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhc
Confidence            9999988888888888877776665432       1        12999999999999999999999999999863332 


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHH
Q 015075          138 RTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWV  217 (413)
Q Consensus       138 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (413)
                      +.+.|.       ...+++.+.       +.+.++..+  ++.+          ..+.....+-..+..++-+..+....
T Consensus       258 ~~~~a~-------~d~~k~~~~-------~~~~~~~~~--~~~~----------~~~~~~~~F~~~f~~~hg~~Llgt~~  311 (538)
T KOG0252|consen  258 KLKQAA-------GDMKKVLSV-------DIEAESTAE--SDVP----------PPSNSFGLFSRLFLRWHGKHLLGTAG  311 (538)
T ss_pred             CHhhhh-------hcccccccc-------ccchhhccc--cCCC----------CcccccchHHHHHHHHHHHHHHHHHH
Confidence            222221       111111111       011111100  0000          00111111222222223333344445


Q ss_pred             HHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCCh------hHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHH
Q 015075          218 LFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDN------SLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVL  291 (413)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~  291 (413)
                      .||..-+.+|+..++.+.+.+..+        ..+.++.      ....+..+.....+||..+..+++|++|||...+.
T Consensus       312 ~WFllDiafy~~nL~~s~I~~~ig--------~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  312 TWFLLDIAFYGQNLFQSVIFSAIG--------VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHhhhhhhhccccHHHHHHHhhc--------cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            566666667776666554432111        1111111      11234556666778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcch-h----HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHH
Q 015075          292 MFVSACIFLLPLVFHQS-A----VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAV  366 (413)
Q Consensus       292 ~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~  366 (413)
                      ++++..++.+.+....+ .    ...+...+...++..|..+....+++|.+|++.|+++.|+..++|.+|++++.....
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            98888887776665332 1    111222333345566788889999999999999999999999999999999998888


Q ss_pred             HHhh-----ccchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhhhhhc
Q 015075          367 GLVT-----SCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  412 (413)
Q Consensus       367 ~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~~~  412 (413)
                      ++.+     ..+....+++++.+..+..+..+++ ||||+|++||+++|.|
T Consensus       464 ~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk~~~leei~~e~~  513 (538)
T KOG0252|consen  464 YLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI-PETKGKSLEEISNEEE  513 (538)
T ss_pred             HhhhccCCccccchHHHHHHHHHHHHhHheeEEe-ecccccCHHHhcChhh
Confidence            8877     5566678888888888776666655 6999999999987654

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=4.1e-33  Score=268.29  Aligned_cols=332  Identities=17%  Similarity=0.232  Sum_probs=213.2

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhhcccch-hHHHHHHHhhccCCC
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH   73 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~   73 (413)
                      +|++++|+++||+|||+++..+.++++++++++++++|+.        .++++|+++|++.|+. +....++.|++|+++
T Consensus        79 ~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  158 (438)
T PRK09952         79 LGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK  158 (438)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence            6788899999999999999999999999999999999987        5889999999999985 677789999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHH
Q 015075           74 RGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI  145 (413)
Q Consensus        74 Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~  145 (413)
                      ||+..+..+.++.+|.++++.+...+.        +.+|||+.|++.+++.++....+...||||+|..++++.++.   
T Consensus       159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~---  235 (438)
T PRK09952        159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA---  235 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc---
Confidence            999999999999999998877666554        357999999999888766666667789999864322111000   


Q ss_pred             HHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHH
Q 015075          146 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVF  224 (413)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  224 (413)
                                               +++.                       ...+.+. +++..   .......+...+
T Consensus       236 -------------------------~~~~-----------------------~~~~~l~~~~~~~---~~~~~~~~~~~~  264 (438)
T PRK09952        236 -------------------------KKRI-----------------------PVIEALLRHPGAF---LKIIALRLCELL  264 (438)
T ss_pred             -------------------------cccC-----------------------CHHHHHHHchHHH---HHHHHHHHHHHH
Confidence                                     0000                       0000011 11111   111112222333


Q ss_pred             HhhhHHhhh-hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 015075          225 SYYGAVLLT-SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL  303 (413)
Q Consensus       225 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  303 (413)
                      .+|....+. .++..        .++.+.   ........+.+...+++.++.|+++||+|||+.+..+.+...+..+.+
T Consensus       265 ~~~~~~~~~~~y~~~--------~~g~s~---~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~  333 (438)
T PRK09952        265 TMYIVTAFALNYSTQ--------NLGLPR---ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF  333 (438)
T ss_pred             HHHHHHHHHHHHHHH--------hcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            333322222 11111        111111   111111223445556777889999999999988776655443332222


Q ss_pred             Hh---cchhHHH-HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhh-hhHhHHHHHHHHHhhccc--hhH
Q 015075          304 VF---HQSAVVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGK-VGGMVCPLVAVGLVTSCH--LRL  376 (413)
Q Consensus       304 ~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~p~~~~~l~~~~~--~~~  376 (413)
                      ..   ..+.... ....+...++.....+..+.+.+|.+|++.|+++.|+.+.+++ +++.++|.+.+.+.+..+  +..
T Consensus       334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~  413 (438)
T PRK09952        334 FMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHS  413 (438)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence            11   1122211 1122222223333345678889999999999999999988876 789999999998877542  334


Q ss_pred             HHHHHHHHHHHHHHHhhccccccc
Q 015075          377 AVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      ++.+..++++++.+..+. .+||+
T Consensus       414 ~~~~~~~~~~i~~v~~~~-~~~~~  436 (438)
T PRK09952        414 VAIYLLAGCLISAMTALL-MKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH-ccccc
Confidence            445555555665555544 46654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=5.9e-33  Score=270.63  Aligned_cols=378  Identities=21%  Similarity=0.297  Sum_probs=240.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP---NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~---~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      .++++++|+++||+|||+++..+.+++.++.+++.+++   +++.+++.|+++|++.|.. +....++.|++|+++|+++
T Consensus        85 ~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  164 (481)
T TIGR00879        85 FIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGAL  164 (481)
T ss_pred             HHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhh
Confidence            36789999999999999999999999999999885543   4568999999999998875 6677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           78 MVALSAFWTAGTIFEASLA---WVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~---~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      +++++.+..+|..+++.++   ....+..+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++....++
T Consensus       165 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (481)
T TIGR00879       165 TSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG  244 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC
Confidence            9999999999999999988   5555678999999997777776677778899999998777777665554443321111


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS  234 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (413)
                         ++.    +...+.+...    ...  .   ...+..+..+.......++...+........++.....+.....+.+
T Consensus       245 ---~~~----~~~~~~~~~~----~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (481)
T TIGR00879       245 ---EDK----ELLDELELID----IKR--S---IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSP  308 (481)
T ss_pred             ---CcH----HHHHHHHHHH----HHH--H---HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHH
Confidence               000    0000000000    000  0   00000001111111111110111111112222222111111111111


Q ss_pred             hccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH---h-cch--
Q 015075          235 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F-HQS--  308 (413)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~-~~~--  308 (413)
                      .+..        ..+.+...   .........+..+++.++.++++||+|||+....+++...+..+.+.   . ..+  
T Consensus       309 ~~~~--------~~g~~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (481)
T TIGR00879       309 TIFE--------NAGVSTDH---AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS  377 (481)
T ss_pred             HHHH--------HcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            1110        11121211   12233445566778899999999999999987776555444333322   1 111  


Q ss_pred             ----hHHH-HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHH
Q 015075          309 ----AVVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEV  383 (413)
Q Consensus       309 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~  383 (413)
                          .... ....+....+..+..+..+.+..|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....++++++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~  457 (481)
T TIGR00879       378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGG  457 (481)
T ss_pred             ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHH
Confidence                1111 11122222223334456778889999999999999999999999999999999988887666667778888


Q ss_pred             HHHHHHHHhhcccccccCcchhh
Q 015075          384 VFVLAIASSLLFPFETMGRELKD  406 (413)
Q Consensus       384 ~~~~~~~~~~~~~~et~~~~l~~  406 (413)
                      +++++.+..+++.||+++++++|
T Consensus       458 ~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       458 LNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             HHHHHHHHHheecccCCCCChhh
Confidence            88888888888889999988764

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.5e-32  Score=261.75  Aligned_cols=330  Identities=20%  Similarity=0.276  Sum_probs=204.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .+|++++|+++||+|||+++..+.++++++++++++++|+.        .++++|+++|+++|+. +...++++|++|++
T Consensus        77 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~  156 (432)
T PRK10406         77 PIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG  156 (432)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC
Confidence            47899999999999999999999999999999999999875        5899999999999985 77789999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHR  144 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~  144 (413)
                      +||+..++.+.+...|.++++.+...+.        +.+|||+.|++.+++.++..+.+..+||+|++..++.       
T Consensus       157 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~-------  229 (432)
T PRK10406        157 RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRAL-------  229 (432)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhh-------
Confidence            9999999998888888888876655442        2689999999999888777767777888876310000       


Q ss_pred             HHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHH
Q 015075          145 ILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF  224 (413)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (413)
                                +                +.                        ..++.+++.+  +.........+....
T Consensus       230 ----------~----------------~~------------------------~~~~~l~~~~--~~~~~~~~~~~~~~~  257 (432)
T PRK10406        230 ----------K----------------EA------------------------GSLKGLWRNR--RAFIMVLGFTAAGSL  257 (432)
T ss_pred             ----------c----------------cc------------------------ccHHHHHhhH--HHHHHHHHHHHHHHH
Confidence                      0                00                        0011111111  111111112222233


Q ss_pred             HhhhHHhhh-hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 015075          225 SYYGAVLLT-SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL  303 (413)
Q Consensus       225 ~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  303 (413)
                      .+|....+. +.+..        .++.+..+   ......+..+...++..+.|+++||+|||+.+....++..+...++
T Consensus       258 ~~~~~~~~lp~~l~~--------~~g~s~~~---~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~  326 (432)
T PRK10406        258 CFYTFTTYMQKYLVN--------TAGMHANV---ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPI  326 (432)
T ss_pred             HHHHHHHHHHHHHHH--------hcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            344333322 22211        11111111   1111223334445667788999999999987766544332222221


Q ss_pred             H--h--cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhhccchhH-H
Q 015075          304 V--F--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRL-A  377 (413)
Q Consensus       304 ~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~-~  377 (413)
                      .  .  ..+......+.....++.....+..+.+.+|.+|++.|+++.|++++++++ .+...|.+.+ +++..+.+. .
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~  405 (432)
T PRK10406        327 LSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAF  405 (432)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHH
Confidence            1  1  112221111121111122122345677889999999999999999999886 3445787766 445555333 3


Q ss_pred             HHHHHHHHHHHHHHhhcccccccCcch
Q 015075          378 VILFEVVFVLAIASSLLFPFETMGREL  404 (413)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~et~~~~l  404 (413)
                      +++..+.++++.+..+++  |+++|+.
T Consensus       406 ~~~~~~~~~i~~~~~~~l--~~~~~~~  430 (432)
T PRK10406        406 FWYVTLMAVVAFLVSLML--HRKGKGM  430 (432)
T ss_pred             HHHHHHHHHHHHHHHHHh--hhccccc
Confidence            344445555555555543  5556654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=4.2e-31  Score=247.52  Aligned_cols=320  Identities=16%  Similarity=0.102  Sum_probs=205.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      .+++++.|+++||+|||+++..+......+.+....++|++.+++.|+++|+++|..+.....++|++|+++|++++++.
T Consensus        40 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~  119 (368)
T TIGR00903        40 LALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLL  119 (368)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            46788999999999999987766555545443334447999999999999999986555666679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      +.+..+|.+++++++..+.+.+|||+.|++.++++++. .+.++++||+|++..   +..                    
T Consensus       120 ~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~--------------------  176 (368)
T TIGR00903       120 SFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGF--------------------  176 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCc--------------------
Confidence            99999999999999999988999999999977776554 556677899986410   000                    


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD  240 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  240 (413)
                          + . +  +.                       .+.++++++++.   ....+..+++....+|+...+.+.+... 
T Consensus       177 ----~-~-~--~~-----------------------~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~-  221 (368)
T TIGR00903       177 ----G-F-K--DA-----------------------VKEFGALAGRKD---LWIIGAILGFGVALFDNLAIWLEAALRP-  221 (368)
T ss_pred             ----c-h-H--HH-----------------------HHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                0 0 0  00                       001122222222   2233344455555555554444333211 


Q ss_pred             CccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChh---HHHHH-HHHHHHHHHHHHHhcchhHHHHHHH
Q 015075          241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK---LSMVL-MFVSACIFLLPLVFHQSAVVTTVLL  316 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  316 (413)
                             .+.+. . .     .....+..+.|.+..++++||..||   ..... ..+...+.+..+....+......+.
T Consensus       222 -------~g~s~-~-~-----~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  287 (368)
T TIGR00903       222 -------AGLED-I-A-----GDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI  287 (368)
T ss_pred             -------CCCCh-H-H-----HHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence                   11111 1 1     1122233334555568889987653   32222 2222222222222222222223333


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      ....++.....+..+.+.+|.+|++.|+++.|+.++.++++++++|.+.+.+..  +....+.+++++.+++.+...++
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhC
Confidence            333344445556678899999999999999999999999999999998887663  45566777777777777666533

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.98  E-value=1.3e-29  Score=244.11  Aligned_cols=340  Identities=19%  Similarity=0.248  Sum_probs=204.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhhcccch-hHHHHHHHhhccCCC
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH   73 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~   73 (413)
                      +|+++.|+++||+|||++++.+.+++++++++++++++++        .++++|+++|++.|.. +....++.|++|+++
T Consensus        71 ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  150 (434)
T PRK15075         71 LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR  150 (434)
T ss_pred             hHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence            5788999999999999999999999999999999999987        4689999999999875 666789999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHH
Q 015075           74 RGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRI  145 (413)
Q Consensus        74 Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~  145 (413)
                      ||+.+++.....++|..+++.++..+.        +.+|||+.|++..+...+..+.....||++++..++++       
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------  223 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR-------  223 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc-------
Confidence            999999999888888888877777652        46899999998655443333334445554332100000       


Q ss_pred             HHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHH
Q 015075          146 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFS  225 (413)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (413)
                                +               +.                    +   ..++...  +..+.........+.....
T Consensus       224 ----------~---------------~~--------------------~---~~~~~~~--~~~~~~~~~~~~~~~~~~~  253 (434)
T PRK15075        224 ----------P---------------SM--------------------R---EIFRSLA--ANWRIVLAGMLMVAMTTVS  253 (434)
T ss_pred             ----------c---------------cc--------------------c---cHHHHHH--HhHHHHHHHHHHHHHHHHH
Confidence                      0               00                    0   0000000  0001111111112222223


Q ss_pred             hhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHH-HH-
Q 015075          226 YYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL-PL-  303 (413)
Q Consensus       226 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~-~~-  303 (413)
                      ++....+.+.+..       +.++.+..+   .........+..+++.++.|+++||+|||+....+......... .+ 
T Consensus       254 ~~~~~~~~p~~l~-------~~~g~~~~~---~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        254 FYLITVYTPTFGK-------TVLHLSAAD---SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHH-------HhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3333322222110       011221111   11223345566678889999999999999887665433322111 11 


Q ss_pred             Hh-cchhH-HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhhccchhHHHHH
Q 015075          304 VF-HQSAV-VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVIL  380 (413)
Q Consensus       304 ~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~  380 (413)
                      .. ..+.. ..........++.....+..+.+.+|.+|++.|+++.|+.+++++. ++.++|.+.+.+.+..+......+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~  403 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGY  403 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHH
Confidence            11 11111 1111111122222233344567789999999999999999888876 488899999988887664222122


Q ss_pred             HHHHHHHHHHHhhcccccccCcchhhhhh
Q 015075          381 FEVVFVLAIASSLLFPFETMGRELKDTVD  409 (413)
Q Consensus       381 ~~~~~~~~~~~~~~~~~et~~~~l~~~~~  409 (413)
                      +.+.+.++.++..+...+..+.+++..++
T Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
T PRK15075        404 WLSFAAVCGLIATLVLYRRRGARLQAAEA  432 (434)
T ss_pred             HHHHHHHHHHHHHHHhccccchhhhhhhc
Confidence            22222233333444556777777776554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.98  E-value=7.7e-30  Score=245.42  Aligned_cols=343  Identities=20%  Similarity=0.258  Sum_probs=216.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|+++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.|.. +....++.|++|+++|++..++
T Consensus        67 ~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~  146 (426)
T PRK12307         67 PFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAF  146 (426)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhH
Confidence            467889999999999999999999999999999999999999999999999998875 6677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      ...+..+|.++++.+...+.+..+||+.|++..++.++..+.....||++++..++.+.               ++    
T Consensus       147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~---------------~~----  207 (426)
T PRK12307        147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG---------------KG----  207 (426)
T ss_pred             HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc---------------cc----
Confidence            99999999999998888888889999999987665555444445567776542211000               00    


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH-hhhhhccCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLTSKLSSG  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~  239 (413)
                          + + +  +..  .                +.....++..++++..+.........+.....++... +.+..+.. 
T Consensus       208 ----~-~-~--~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  260 (426)
T PRK12307        208 ----K-H-S--QSA--W----------------SVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-  260 (426)
T ss_pred             ----c-c-c--ccc--h----------------hhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                0 0 0  000  0                0000112223332222222222222111111111111 11111110 


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh-cchhHH-HHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVV-TTVLLF  317 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~  317 (413)
                              .+.+.   ........+..++.+++.++.+++.||+|||+....+.+.+.+....+.. ..+... .....+
T Consensus       261 --------~g~~~---~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (426)
T PRK12307        261 --------EGFDT---GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLF  329 (426)
T ss_pred             --------cCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence                    11111   11112233455667888999999999999999887776665544333322 222211 112222


Q ss_pred             HHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHhhccc
Q 015075          318 GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  396 (413)
                      +......+..+..+.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+.... ++.....+.++.+...+..
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (426)
T PRK12307        330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSI  409 (426)
T ss_pred             HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccC
Confidence            222222333445667789999999999999999999999999999999988887764432 2333333334444444445


Q ss_pred             ccccC
Q 015075          397 FETMG  401 (413)
Q Consensus       397 ~et~~  401 (413)
                      ||+.+
T Consensus       410 ~~~~~  414 (426)
T PRK12307        410 PDRLK  414 (426)
T ss_pred             Chhhh
Confidence            66644

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=4.6e-29  Score=238.49  Aligned_cols=329  Identities=23%  Similarity=0.325  Sum_probs=215.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|+++.|+++||+|||+++..+.++..++.+++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++.+++
T Consensus        64 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  143 (406)
T PRK11551         64 LPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSL  143 (406)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999998865 6677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      .+.+..+|..+++.++..+.+..+||+.|++.++..++. .....++||+|++..++++.++.+                
T Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------  207 (406)
T PRK11551        144 MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA----------------  207 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh----------------
Confidence            999999999999999888888889999999877665544 445566899886532211100000                


Q ss_pred             CccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (413)
                               +.  .                           +..++++..+.....+..++.....++....+.+.+...
T Consensus       208 ---------~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  249 (406)
T PRK11551        208 ---------PV--L---------------------------RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG  249 (406)
T ss_pred             ---------hh--H---------------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     00  0                           000000000111112222222222222222222211110


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV  319 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (413)
                              .+.+....+   .......++.+++.++.|++.||+|||+.+..+.+.....+..+....+........+..
T Consensus       250 --------~g~s~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (406)
T PRK11551        250 --------QGLSRSQAG---LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA  318 (406)
T ss_pred             --------CCCChhhhh---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                    122222222   223345567788999999999999999887765554444333333333332222223333


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHhhcc
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA-VILFEVVFVLAIASSLLF  395 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  395 (413)
                      .++..+..+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+.... ++....+.+++.+..++.
T Consensus       319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455567788899999999999999999999999999999999988876443333 333333444444444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.97  E-value=1.3e-29  Score=242.16  Aligned_cols=336  Identities=16%  Similarity=0.219  Sum_probs=205.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++++++.+++++++|++.+++.|+++|++.|.. +....++.|++|+++||+.+++
T Consensus        57 ~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  136 (412)
T TIGR02332        57 VICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANAL  136 (412)
T ss_pred             HHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999875 6667889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHhhHHHHHH-HHHhhcCCCCch---HHhhccChHHHHHHHHHHH
Q 015075           81 LSAFWTAGTIFEASLAWVVMT------RLNWRWLLAFSSVPSFAL-LLFYGLAPESPR---YLCAKARTVDAHRILEKMA  150 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~------~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~---~l~~~~~~~~a~~~~~~~~  150 (413)
                      ++.+..+|.++++++++.+.+      ..|||+.|++.+++.++. .+.++++||+|+   |+.++    +.+...++.+
T Consensus       137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~  212 (412)
T TIGR02332       137 FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMID  212 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHH
Confidence            999999999999999887753      369999999988887654 455677899985   22211    1111111111


Q ss_pred             HHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH
Q 015075          151 FVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV  230 (413)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (413)
                      . ++.+.+      + . +.+.     +++           . ......++.+++++.+    .....+++....++...
T Consensus       213 ~-~~~~~~------~-~-~~~~-----~~~-----------~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  262 (412)
T TIGR02332       213 N-DQLTLE------Q-P-EGAF-----AHA-----------A-MPQRSMLREIFTPAIM----LYTLAYFCLTNTLSAIN  262 (412)
T ss_pred             h-cccccc------c-c-cccc-----ccc-----------c-ccHHHHHHHhcChHHH----HHHHHHHHHHHHHHHHH
Confidence            0 000000      0 0 0000     000           0 0000112223332221    22222333333333333


Q ss_pred             hhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHH-HHHHHHHHHHHHHHHHhcchh
Q 015075          231 LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS-MVLMFVSACIFLLPLVFHQSA  309 (413)
Q Consensus       231 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~~~~  309 (413)
                      .+.+.+....      ..+.+...   .........++..+|.++.|+++||++||+. .....+...+.+.......+.
T Consensus       263 ~~~p~~l~~~------~~~~s~~~---~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~  333 (412)
T TIGR02332       263 IWTPQILQSF------NQGSSNIM---IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHN  333 (412)
T ss_pred             HHHHHHHHhc------CCCCcHHH---hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            2222221110      00111111   1122345566678899999999999997764 333332222222211122222


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHH
Q 015075          310 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVIL  380 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~  380 (413)
                      ...........++.....+..+....|.+|++.|+++.|+.+..+++|++++|.+.+.+.+..+ +...+.+
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~  405 (412)
T TIGR02332       334 LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF  405 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence            2111111111112222234456677889999999999999999999999999999988888765 3344443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=8.7e-29  Score=236.31  Aligned_cols=327  Identities=22%  Similarity=0.317  Sum_probs=208.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.+.. +...+++.|++|+++|++..++
T Consensus        61 ~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  140 (405)
T TIGR00891        61 WFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGL  140 (405)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHH
Confidence            367889999999999999999999999999999999999999999999999998875 6677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLN--WRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~--Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      .+.+..+|.++++.++..+.+..+  ||+.|++.+++.++..+.....||+|++..++++.++..+..++..   +.+  
T Consensus       141 ~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--  215 (405)
T TIGR00891       141 LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILY---GGE--  215 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHh---ccc--
Confidence            999999999999999888877665  9999998877776666667778998876433222111111111100   000  


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhH-Hhhhhhcc
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGA-VLLTSKLS  237 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  237 (413)
                              +...++.                    ++.....+... ++...................... .+++..+.
T Consensus       216 --------~~~~~~~--------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (405)
T TIGR00891       216 --------HRIANIV--------------------MTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLK  266 (405)
T ss_pred             --------hhhhhhh--------------------hhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence                    0000000                    00000000000 011111111111111111111111 11111111


Q ss_pred             CCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HhcchhHHHHHHH
Q 015075          238 SGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL-VFHQSAVVTTVLL  316 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  316 (413)
                              +.++.+...   .........++.+++.++.+++.||+|||+.+..+.+.+....... ....+........
T Consensus       267 --------~~~g~s~~~---~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (405)
T TIGR00891       267 --------ADLGLSPHT---VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGL  335 (405)
T ss_pred             --------HHhCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence                    011111111   1122334556778899999999999999998777665543322222 2222322222222


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  373 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~  373 (413)
                      +...++..+..+..+.+.+|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       336 FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333344444556677788999999999999999999999999999999999988766

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.3e-30  Score=231.24  Aligned_cols=342  Identities=20%  Similarity=0.281  Sum_probs=244.0

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++.+++|.++||.++|..+..++++.++..++.+++++...+.++.+++|...|. .|.....+..|+|++|||+..+++
T Consensus        79 ~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siW  158 (448)
T COG2271          79 VSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIW  158 (448)
T ss_pred             HHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEe
Confidence            5788999999999999999999999999999999999999999999999998875 588889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--HHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           82 SAFWTAGTIFEASLA--WVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~--~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      +.+.++|..+.+++.  +.+..+.+||..|++.++.++++ ++.++.++|+|+-   .|-.                   
T Consensus       159 n~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP-------------------  216 (448)
T COG2271         159 NTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLP-------------------  216 (448)
T ss_pred             hhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCC-------------------
Confidence            999999999999888  77777889999999999988765 6667778999972   1110                   


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhh---hHHhhhhh
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYY---GAVLLTSK  235 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  235 (413)
                          +.++..++..+..  +++           +.+++...++.+  .++..+.-.+|.+.+.+.+.|.   ++.-|.+ 
T Consensus       217 ----~ie~~~~d~~e~~--~~~-----------~~~~~ls~~~i~--~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p-  276 (448)
T COG2271         217 ----PIEEYRGDPLEIY--EEE-----------KENEGLTAWQIF--VKYVLKNKLIWLLALANVFVYVVRYGINDWGP-  276 (448)
T ss_pred             ----CHHHhhcCchhhh--hhh-----------ccCCCccHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHH-
Confidence                0000000000000  000           000001111111  1222333346777777777763   3333332 


Q ss_pred             ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--ChhHHHHH-HHHHHHHHHHHHHhcch--hH
Q 015075          236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVL-MFVSACIFLLPLVFHQS--AV  310 (413)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~-~~~~~~~~~~~~~~~~~--~~  310 (413)
                            .+..+..|++..+.+.   .....=.++++|++++|+++||+  |||..+.+ ++++..+++..+....+  ..
T Consensus       277 ------~YL~e~k~~s~~~a~~---a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~  347 (448)
T COG2271         277 ------LYLSEVKGFSLVKANW---AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYL  347 (448)
T ss_pred             ------HHHHHhcCCCHHHHHH---HHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHH
Confidence                  2223444554444332   23445567899999999999996  77766554 34444444444444333  35


Q ss_pred             HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 015075          311 VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  389 (413)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  389 (413)
                      +...+++.+++++.|...+......|..|.+..|++.|+...++++ |+..+....+++.|..+....++.+.+.++++.
T Consensus       348 l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~  427 (448)
T COG2271         348 LDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAI  427 (448)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHH
Confidence            5566777888888998888888899999999999999999999999 888888877877787777777887777777665


Q ss_pred             HHhhcc
Q 015075          390 ASSLLF  395 (413)
Q Consensus       390 ~~~~~~  395 (413)
                      +.....
T Consensus       428 lll~~~  433 (448)
T COG2271         428 LLLLPV  433 (448)
T ss_pred             HHHHHH
Confidence            555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=3.9e-28  Score=233.67  Aligned_cols=351  Identities=14%  Similarity=0.145  Sum_probs=216.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++.++.++++++.++.++++|++.+++.|++.|++.|.. +...+++.|++|+++||+.+++
T Consensus        72 ~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~  151 (434)
T PRK11663         72 GVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAI  151 (434)
T ss_pred             HHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999988764 6677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      .+.+..+|..+++.+++.+.+.+|||+.|++.+++.++. ....+++||+|++.......++.                 
T Consensus       152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----------------  214 (434)
T PRK11663        152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-----------------  214 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-----------------
Confidence            999999999999999999888899999999888776544 44556678888642111000000                 


Q ss_pred             Cccccchhhhhhhhccccccccccchhhhcchhhccccch-hh-hhccchhhhHHHHHHHHHHHHHHHhhhHHhh-hhhc
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSS-FF-MLFSRKLIRTTLLLWVLFFANVFSYYGAVLL-TSKL  236 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  236 (413)
                           ++..+.+++.    +.+            +.+... ++ ..++.+.   ........+.....++....+ +.++
T Consensus       215 -----~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~l  270 (434)
T PRK11663        215 -----HDALELAQQQ----EGA------------GLSRKEILTKYVLLNPY---IWLLSFSYVLVYVVRAAINDWGNLYM  270 (434)
T ss_pred             -----ccccccchhc----ccc------------CCChhhhHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0000000000    000            000000 00 0111111   111111112222222222222 2222


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--Chh-HHHHHHHHHHH--HHHHHHHhcchhHH
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRK-LSMVLMFVSAC--IFLLPLVFHQSAVV  311 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr-~~~~~~~~~~~--~~~~~~~~~~~~~~  311 (413)
                      .        +.++.+....+   .......++..+|.++.|+++||+  ++| .......+...  ...+......+...
T Consensus       271 ~--------~~~g~s~~~a~---~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (434)
T PRK11663        271 S--------ETLGVDLVTAN---SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVM  339 (434)
T ss_pred             H--------hccCCCHHHHH---HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHH
Confidence            1        11122222111   123344566788999999999998  333 32222111111  11111111112222


Q ss_pred             HHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 015075          312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  391 (413)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
                      .....+...++..+.......+..|.+|++.|+++.|+.++.+++|+.++|.+.+.+.+..+....+...+++++++.+.
T Consensus       340 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~  419 (434)
T PRK11663        340 QAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL  419 (434)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            22222222232223333334567899999999999999999999999999999999999888777777777777777666


Q ss_pred             hhcccccccCcch
Q 015075          392 SLLFPFETMGREL  404 (413)
Q Consensus       392 ~~~~~~et~~~~l  404 (413)
                      .++..+++++++-
T Consensus       420 ~~~~~~~~~~~~~  432 (434)
T PRK11663        420 LLPFLNAQAPREA  432 (434)
T ss_pred             HHHHHhhhchhcc
Confidence            6666666655543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=2.2e-27  Score=225.58  Aligned_cols=319  Identities=16%  Similarity=0.153  Sum_probs=207.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++++++|+++||+|||+++..+.+++.++++++++++|++.+++.|+++|++.+.. +...+++.|++|+++|++++++.
T Consensus        59 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~  138 (390)
T PRK03545         59 LMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLL  138 (390)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHH
Confidence            56788999999999999999999999999999999999999999999999988765 66778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      +.+..+|..+++++++.+.+..|||+.|++.++..++.. .....+||.|+    +++ ++                   
T Consensus       139 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~-~~-------------------  194 (390)
T PRK03545        139 ATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS-GS-------------------  194 (390)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc-ch-------------------
Confidence            999999999999999998888999999999888776553 33445666442    000 00                   


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhH-HhhhhhccCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGA-VLLTSKLSSG  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  239 (413)
                               .+                           ..+..++++..+.....   .+.....++.. .+..+.+.. 
T Consensus       195 ---------~~---------------------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-  234 (390)
T PRK03545        195 ---------LK---------------------------SLPLLFRRPALVSLYLL---TVVVVTAHFTAYSYIEPFVQQ-  234 (390)
T ss_pred             ---------HH---------------------------HHHHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
Confidence                     00                           00001111111111111   11111111111 111111110 


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV  319 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (413)
                             ..+.+....+   .......+.++++.++.+++.||.+||.......+.............+...........
T Consensus       235 -------~~g~s~~~~~---~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~  304 (390)
T PRK03545        235 -------VAGLSENFAT---LLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFW  304 (390)
T ss_pred             -------hcCCCccHHH---HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence                   1112222111   223345567788999999999999988754433333222222222222322222222222


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (413)
                      .+...+..+.......|..| +.|+.+.|+.+...++|..++|.+.+.+.+..+....+.....+.+++.+...+..
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            23332223334455667766 57899999999999999999999999999888877777777777777666665554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=3e-28  Score=236.70  Aligned_cols=348  Identities=14%  Similarity=0.128  Sum_probs=207.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF-----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~-----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      +++++.|+++||+|||+++..+.++++++.++.++     ++|++.+++.|+++|++.|.. +...+++.||+|+++||+
T Consensus        79 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~  158 (467)
T PRK09556         79 VGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGR  158 (467)
T ss_pred             HHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceee
Confidence            67889999999999999999888888877776655     689999999999999988764 777789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHH
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRL---NWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFV  152 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~---~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~  152 (413)
                      ++++++.+..+|.++++++...+.+..   +||..|.+.+++.++. ++.+++.+|+|+..   +..++ ++.      .
T Consensus       159 a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~------~  228 (467)
T PRK09556        159 FLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI------F  228 (467)
T ss_pred             eEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc------c
Confidence            999999999999999988876655432   6999998888777655 33445567766521   00000 000      0


Q ss_pred             cCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchh-hhhccchhhhHHHHHHHHHHHHHHHhhhHHh
Q 015075          153 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSF-FMLFSRKLIRTTLLLWVLFFANVFSYYGAVL  231 (413)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (413)
                      ++ +.         . ++++..   ++++           . ...+.+ +..++.+.   ........++....+++...
T Consensus       229 ~~-~~---------~-~~~~~~---~~~~-----------~-~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~  279 (467)
T PRK09556        229 GE-PI---------S-EEDKET---ESTD-----------M-TKWQIFVEYVLKNPV---IWLLCFANIFLYIVRIGIDN  279 (467)
T ss_pred             cC-cc---------c-hhhhcc---cccc-----------C-cHHHHHHHHHHcChH---HHHHHHHHHHHHHHHHHHHH
Confidence            00 00         0 000000   0000           0 000000 10111111   11122222222223333322


Q ss_pred             hhh-hccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHH--HHHHhcch
Q 015075          232 LTS-KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL--LPLVFHQS  308 (413)
Q Consensus       232 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~--~~~~~~~~  308 (413)
                      +.+ ++.        +.++.+..+.+   .......++.+++.++.|+++||+|||+.............  ..+....+
T Consensus       280 ~~p~yl~--------~~~g~s~~~a~---~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T PRK09556        280 WSPVYAF--------QELGFSKEDAI---NTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATS  348 (467)
T ss_pred             HHHHHHH--------HccCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence            222 221        11222221111   22334555678899999999999998876554333222211  11222223


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhh------------ccchh
Q 015075          309 AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVT------------SCHLR  375 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~------------~~~~~  375 (413)
                      ........+..+++..+..........|.+|++.|+++.|+.+.++++ +++++|.+.+.+.+            ..++.
T Consensus       349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~  428 (467)
T PRK09556        349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWA  428 (467)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChH
Confidence            222223333333333333333345667999999999999999999997 66999999999988            44555


Q ss_pred             HHHHHHHHHHHHHHHHhhccc-cccc
Q 015075          376 LAVILFEVVFVLAIASSLLFP-FETM  400 (413)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~-~et~  400 (413)
                      ..+.++.++.+++.+..+++. .|++
T Consensus       429 ~~f~~~~~~~~~~~~~~~~~~~~~~~  454 (467)
T PRK09556        429 GTFAALDIAAIGCICLMAIVAVMEER  454 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655555442 4554

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=1.8e-27  Score=226.53  Aligned_cols=330  Identities=26%  Similarity=0.378  Sum_probs=214.6

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.|.. +...+++.|++|+++|++..++
T Consensus        66 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  145 (398)
T TIGR00895        66 AFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGL  145 (398)
T ss_pred             HHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhh
Confidence            467889999999999999999999999999999999999999999999999998875 6778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHH-HHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF-ALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~-~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      ...+..+|..+++.+++.+.+..+||+.|++.++..+ ...+...++||+|++..++ +.+++.+..++.....+++.. 
T Consensus       146 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  223 (398)
T TIGR00895       146 MFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-  223 (398)
T ss_pred             HhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-
Confidence            9999999999999999998888999999988865444 4455667789998876554 333333333333221111000 


Q ss_pred             CccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (413)
                              .+.++++     .+        .   +......+.++.++..+.....+...+.....++....+.+.+.. 
T Consensus       224 --------~~~~~~~-----~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  278 (398)
T TIGR00895       224 --------SALPEQK-----AT--------Q---GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-  278 (398)
T ss_pred             --------ccccccc-----cc--------c---chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                    0000000     00        0   000011222333333333344444443333333333222222211 


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV  319 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (413)
                             ..+.+...   .........++.+++.++.++++||+|||.......+.............+........+..
T Consensus       279 -------~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (398)
T TIGR00895       279 -------ELGFSLSL---AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIA  348 (398)
T ss_pred             -------HcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence                   11111111   12223455667788999999999999999544433333322222222122322223333344


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      .++.....+..+.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+
T Consensus       349 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       349 GFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            4445555677888999999999999999999999999999999988754

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=1.6e-27  Score=228.56  Aligned_cols=344  Identities=13%  Similarity=0.064  Sum_probs=223.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcc
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF-----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRG   75 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~-----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg   75 (413)
                      .+++++.|+++||+|||+++..+.++.+++.+..+.     .++++.+++.|+++|++.|.. +...+++.|+.|+++|+
T Consensus        66 ~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  145 (417)
T PRK10489         66 FIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM  145 (417)
T ss_pred             HHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH
Confidence            367889999999999999998888777776655432     578899999999999987654 56677889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCC
Q 015075           76 RWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQT  155 (413)
Q Consensus        76 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~  155 (413)
                      +..++.+...++|..+++.+++.+.+..+||+.|++.++..++..+..+.+||+++..  +++                 
T Consensus       146 ~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-----------------  206 (417)
T PRK10489        146 QAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-----------------  206 (417)
T ss_pred             HHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-----------------
Confidence            9999999999999999999999988888999999888777666666666777764310  000                 


Q ss_pred             CCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhh
Q 015075          156 KLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSK  235 (413)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (413)
                               +++  .++.                       .+.++..++++..+........   ... ......+.+.
T Consensus       207 ---------~~~--~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~p~  248 (417)
T PRK10489        207 ---------EHP--LRSL-----------------------LAGFRFLLASPVVGGIALLGGL---LTM-ASAVRVLYPA  248 (417)
T ss_pred             ---------ccc--hHHH-----------------------HHHHHHHHcChHHHHHHHHHHH---HHH-HHhHHHhhHH
Confidence                     000  0000                       0011112222222211111111   110 1111111111


Q ss_pred             ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015075          236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL  315 (413)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (413)
                      +.       .+.++.+....+   .......++.+++.++.+++.||.++++.+..+.+...+..+.+...++.......
T Consensus       249 ~~-------~~~~g~~~~~~g---~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (417)
T PRK10489        249 LA-------DEVWQMGAAQIG---LLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLC  318 (417)
T ss_pred             HH-------HhccCCChhHhH---HHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            11       011222222222   12234456677888999999999777666655554444333333333333222222


Q ss_pred             HHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      .+...++.....+...++..|..|++.|+++.|+.+...+++..++|.+.+.+.+..+....+..++++..+..++....
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence            22222222222344567889999999999999999999999999999999999888777777777777766666666677


Q ss_pred             cccccCcchhhhhhhhc
Q 015075          396 PFETMGRELKDTVDAIE  412 (413)
Q Consensus       396 ~~et~~~~l~~~~~~~~  412 (413)
                      .||++++++||+++|..
T Consensus       399 ~~~~~~~~~~~~~~~~~  415 (417)
T PRK10489        399 LGELRRFRQTPPEVDAS  415 (417)
T ss_pred             cccccccccccccCCCC
Confidence            79999999999998864

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=1.7e-27  Score=226.28  Aligned_cols=342  Identities=17%  Similarity=0.231  Sum_probs=209.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++++++.++.++++|++.+++.|+++|++.|.. +....++.|++|+++|++.+++
T Consensus        43 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  122 (399)
T TIGR00893        43 VVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSI  122 (399)
T ss_pred             HHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999998875 6777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      .+....+|.++++.+++.+.+..+||+.|++.+++.++.. ...+..||+|+.   +++.++.++....      ++.. 
T Consensus       123 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~-  192 (399)
T TIGR00893       123 FNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK---AKWLTEEEKYIVV------GGLL-  192 (399)
T ss_pred             HHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc---cccCCHHHHhhcc------hhhc-
Confidence            9999999999999999988888999999998887776543 344556776541   1110110000000      0000 


Q ss_pred             Cccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHHHHHHHhhhHHhhhh-hcc
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTS-KLS  237 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  237 (413)
                          .+.+ ++ +      +             .+......+..++ ++...    .....+.....+.....+.+ .+.
T Consensus       193 ----~~~~-~~-~------~-------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (399)
T TIGR00893       193 ----AEQQ-GK-G------P-------------STPKKYQIKELLKDRRVWG----LALGQFLVNIGLGFFLTWFPTYLV  243 (399)
T ss_pred             ----cccc-cc-c------c-------------cCCCccchHHHhcCHHHHH----HHHHHHHHHhHHHHHHHHHHHHHH
Confidence                0000 00 0      0             0000111222222 22211    11111222222222111111 111


Q ss_pred             CCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhH--HHHHHH-H-HHHH-H-HHHHHhc-chhH
Q 015075          238 SGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL--SMVLMF-V-SACI-F-LLPLVFH-QSAV  310 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~--~~~~~~-~-~~~~-~-~~~~~~~-~~~~  310 (413)
                      .        ..+.+....   ........+..+++.++.+++.||++||+  ...... . .... . ....... .+..
T Consensus       244 ~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (399)
T TIGR00893       244 Q--------ERGLSILEA---GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIP  312 (399)
T ss_pred             H--------HhcccHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            0        011111111   12233455667788999999999999985  111111 1 1101 1 1111111 1111


Q ss_pred             HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHH
Q 015075          311 VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAI  389 (413)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~  389 (413)
                      ...........+..+..+..+.+.+|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..+ ....+++.+++.+++.
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~  392 (399)
T TIGR00893       313 YAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA  392 (399)
T ss_pred             HHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence            112222222233333567788899999999999999999999999999999999998888776 5555666666666555


Q ss_pred             HHhh
Q 015075          390 ASSL  393 (413)
Q Consensus       390 ~~~~  393 (413)
                      +..+
T Consensus       393 ~~~~  396 (399)
T TIGR00893       393 LSYL  396 (399)
T ss_pred             HHHH
Confidence            5443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=3.5e-26  Score=217.30  Aligned_cols=328  Identities=13%  Similarity=0.104  Sum_probs=209.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+..+++++.+++++++|++.+++.|+++|++.|.. +....++.|++| ++|+++++.
T Consensus        58 ~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~  136 (393)
T PRK09705         58 GGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGL  136 (393)
T ss_pred             HHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHH
Confidence            367889999999999999999999999999999999999999999999999998875 555677889987 889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHhhHHHHHHHHHhhcCC-CCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRL-NWRWLLAFSSVPSFALLLFYGLAP-ESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~-~Wr~~f~~~~i~~~~~~~~~~~~p-Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      +..+...|..+++.++..+.++. +||+.+.+.+++.++....++... +.|+                           
T Consensus       137 ~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  189 (393)
T PRK09705        137 WSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA---------------------------  189 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------------------------
Confidence            99999999999999888887765 899988765555444333222211 1110                           


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                            +++  . ++.      .              .   .+.+.+++.+    ......+.....++....+.+.+..
T Consensus       190 ------~~~--~-~~~------~--------------~---~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~lp~~l~  233 (393)
T PRK09705        190 ------SSH--K-TTT------T--------------P---VRVVFTPRAW----TLGVYFGLINGGYASLIAWLPAFYI  233 (393)
T ss_pred             ------ccc--C-CCc------C--------------C---cccccCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000  0 000      0              0   0001111111    1111112222233332222221111


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-hcchhHHHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-FHQSAVVTTVLLF  317 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  317 (413)
                      .        ++.+....+.   ...+..++.++|.++.+++.||.+||+....+.....+....+. ...+.....  .+
T Consensus       234 ~--------~g~s~~~ag~---~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~  300 (393)
T PRK09705        234 E--------IGASAQYSGS---LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AM  300 (393)
T ss_pred             H--------cCCChhhhhH---HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HH
Confidence            0        1222222222   23455667788999999999999999877766555444333222 222221111  11


Q ss_pred             HHHHHhhhhhhhhheeccccc-ccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhhcc
Q 015075          318 GVRMCVTGTITVATIYAPEIY-PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      ...+...+..+.......+.. |++.|++..|+.+.++++++.++|.+.+.+.|..+. ...+.+..+++++..+..+.+
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            222222233344444455666 467899999999999999999999999999998764 344555556666667777788


Q ss_pred             cccccCcchhh
Q 015075          396 PFETMGRELKD  406 (413)
Q Consensus       396 ~~et~~~~l~~  406 (413)
                      +|||.+|.+.+
T Consensus       381 ~~~~~~~~~~~  391 (393)
T PRK09705        381 APARFPQLWVK  391 (393)
T ss_pred             ccccccchhcc
Confidence            99998887654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=2.9e-26  Score=218.63  Aligned_cols=324  Identities=13%  Similarity=0.080  Sum_probs=205.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc--------ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS--------PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a--------~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .+++++.|+++||+|||+++..+.++++++.++++++        .+++.+++.|+++|++.+.. +...+++.|+.|++
T Consensus        65 ~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  144 (399)
T PRK05122         65 LLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL  144 (399)
T ss_pred             HHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh
Confidence            3678899999999999999999999888877766543        25778999999999998875 66678889999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFV  152 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~  152 (413)
                      +|++++++.+.....|.++++.+++.+.+..|||+.+++..+..++........||+++   ++++              
T Consensus       145 ~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------  207 (399)
T PRK05122        145 HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP---VKGE--------------  207 (399)
T ss_pred             hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc--------------
Confidence            99999999999999999999999999988999999988766655443333332333221   0000              


Q ss_pred             cCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH-h
Q 015075          153 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-L  231 (413)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  231 (413)
                                  +.+  .                       +   +.++     +...... ...   ...+.+.... +
T Consensus       208 ------------~~~--~-----------------------~---~~~~-----~~~~~~~-~~~---~~~~~~~~~~~~  238 (399)
T PRK05122        208 ------------RLP--F-----------------------R---RVLG-----RVWPYGM-GLA---LASIGFGTIATF  238 (399)
T ss_pred             ------------chh--H-----------------------H---HHHH-----HHHHHHH-HHH---HHHHHHHHHHHH
Confidence                        000  0                       0   0000     0000000 000   0011111110 1


Q ss_pred             hhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHH
Q 015075          232 LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV  311 (413)
Q Consensus       232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~  311 (413)
                      ...++. .        .+.  ...+   .......++.+++.++.+++.||+|||+.+..+.....+....+...++...
T Consensus       239 ~~~~~~-~--------~~~--~~~~---~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (399)
T PRK05122        239 ITLYYA-A--------RGW--DGAA---LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWM  304 (399)
T ss_pred             HHHHHH-H--------ccc--ccch---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            111110 0        011  1111   1122345556778899999999999998877665555444433333333332


Q ss_pred             HHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 015075          312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  391 (413)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
                      .....+...++.....+.......|..|++.|+++.|+.+...++++.++|.+.+.+.+..+....+++.+++.+++.+.
T Consensus       305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  384 (399)
T PRK05122        305 ALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLAL  384 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            22222222233333344444566789999999999999999999999888888888888777777777777777776666


Q ss_pred             hhcccccccCcchhh
Q 015075          392 SLLFPFETMGRELKD  406 (413)
Q Consensus       392 ~~~~~~et~~~~l~~  406 (413)
                      ..++ +++++|+.+|
T Consensus       385 ~~~~-~~~~~~~~~~  398 (399)
T PRK05122        385 TWLL-YRRAPRAVPE  398 (399)
T ss_pred             HHHh-cccccccCCC
Confidence            5554 5666666655

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=1.9e-26  Score=226.21  Aligned_cols=370  Identities=20%  Similarity=0.267  Sum_probs=215.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++++++.|+++||+|||+++..+.++++++.++.++++|++.+++.|+++|++.++. +....++.|++|+++|++..++
T Consensus        69 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  148 (496)
T PRK03893         69 WFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF  148 (496)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999999988765 6677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      ...+..+|..+++.+++.+.+.++||+.|++..++.++..+.....||++++..++++.++..+..+.....+       
T Consensus       149 ~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------  221 (496)
T PRK03893        149 LISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGE-------  221 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcch-------
Confidence            9999999999999999999899999999998766665555566678888765432222111111100000000       


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccc-------------hhhhhccchhhhHHHHHHHHHHHHHHHhh
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFS-------------SFFMLFSRKLIRTTLLLWVLFFANVFSYY  227 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (413)
                            ............   ...............+.             .......++............+......+
T Consensus       222 ------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (496)
T PRK03893        222 ------HRIINILLTLAA---AAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSW  292 (496)
T ss_pred             ------hHHHHHHHHHHH---HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccc
Confidence                  000000000000   00000000000000000             00000000000000011111111110001


Q ss_pred             hH-HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc
Q 015075          228 GA-VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH  306 (413)
Q Consensus       228 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~  306 (413)
                      .. .+++.++..        ..+.+.   ...........++.+++.++.|+++||+|||+.+..+.++..+..+.+...
T Consensus       293 ~~~~~lp~~l~~--------~~g~~~---~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  361 (496)
T PRK03893        293 PIQALLPTYLKT--------DLGYDP---HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI  361 (496)
T ss_pred             hHHHHHHHHHHh--------hcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence            11 112222211        111111   112223344556677899999999999999988776655544333322221


Q ss_pred             -c-hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHH
Q 015075          307 -Q-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVV  384 (413)
Q Consensus       307 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~  384 (413)
                       . +........+....+..+..+....+..|.+|++.|+++.|+.+..+.+++.++|.+.+.+.+..+....+...+.+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        362 GGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             cccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence             1 21212222222222333344556667889999999999999999999999999999999888877765555444433


Q ss_pred             H-HHHHHHhhccccc
Q 015075          385 F-VLAIASSLLFPFE  398 (413)
Q Consensus       385 ~-~~~~~~~~~~~~e  398 (413)
                      . +++.+...+..|+
T Consensus       442 ~~~~~~~~~~~~~~~  456 (496)
T PRK03893        442 LTFVVILLIGLDMPS  456 (496)
T ss_pred             HHHHHHHHHHhcCcH
Confidence            3 3333333343443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=1.3e-26  Score=220.13  Aligned_cols=306  Identities=23%  Similarity=0.331  Sum_probs=194.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHH--------HHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYV--------SLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~--------~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .+|+++.|+++||+|||+++..+.++..++.+++++++++.        .+++.|+++|++.|.. +....++.|++|++
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  128 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG  128 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc
Confidence            36889999999999999999999999999999999999976        4889999999998875 66778999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVM--------TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHR  144 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~--------~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~  144 (413)
                      +|++..+..+.+..+|.++++.++..+.        +.++||+.|++.++..++........||+|++..++++.     
T Consensus       129 ~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  203 (394)
T TIGR00883       129 KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH-----  203 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc-----
Confidence            9999999999999999999988776543        357999999988777666666666678876532110000     


Q ss_pred             HHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHH
Q 015075          145 ILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF  224 (413)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (413)
                                 +               +.+                       ...+..++++. +.........+....
T Consensus       204 -----------~---------------~~~-----------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~  233 (394)
T TIGR00883       204 -----------K---------------KKR-----------------------GPIRETLTKHR-KPFLLGLGLVIATTT  233 (394)
T ss_pred             -----------c---------------ccc-----------------------CCHHHHHHhch-HHHHHHHHHHHHHHH
Confidence                       0               000                       00001111110 111111122222222


Q ss_pred             HhhhHHh-hhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHH--H
Q 015075          225 SYYGAVL-LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL--L  301 (413)
Q Consensus       225 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~--~  301 (413)
                      .++.... .+..+..        .++.+.   ...........+...++.++.|+++||+|||+..........+..  .
T Consensus       234 ~~~~~~~~~~~~~~~--------~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  302 (394)
T TIGR00883       234 TFYLITTYLPTYLTQ--------TLGLSA---NSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL  302 (394)
T ss_pred             HHHHHHHHHHHHHHH--------hcCCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            2222211 1111110        111111   111222344556677788899999999999987664433322211  1


Q ss_pred             HHHh--cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhh-hhhHhHHHHHHHHHhhccc
Q 015075          302 PLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCH  373 (413)
Q Consensus       302 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~  373 (413)
                      ....  ..+............++.....+..+.+.+|.+|++.|+++.++.+.++ .+++.++|.+.+.+.+..+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       303 LMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            1111  1222222222233333333455667888999999999999999876665 5678899999998888766

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=2.4e-26  Score=217.12  Aligned_cols=317  Identities=16%  Similarity=0.192  Sum_probs=202.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|.. +....++.|++| ++|+++.++
T Consensus        52 ~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  130 (377)
T TIGR00890        52 AMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGI  130 (377)
T ss_pred             HHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHH
Confidence            468899999999999999999999999999999999999999999999999998864 556677888887 679999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH-hhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      ...+..+|..+++++...+.+..+||+.|++.+++.++.... .++++|.|+. .++                  ++   
T Consensus       131 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~---  188 (377)
T TIGR00890       131 IIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ-LIK------------------TN---  188 (377)
T ss_pred             HHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh-ccc------------------cC---
Confidence            999999999887777766677789999999988887665443 3444443320 000                  00   


Q ss_pred             Cccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHHHhhh-HHhhhhhcc
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYG-AVLLTSKLS  237 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  237 (413)
                           +   +.++++                       ...+..+ +++...    .....+...+.+.. .........
T Consensus       189 -----~---~~~~~~-----------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  233 (377)
T TIGR00890       189 -----I---EVSVKD-----------------------YTVWEMLRTPQFWV----LYLSFFLNAVSGLLLIGLYKPYGQ  233 (377)
T ss_pred             -----c---ccchhh-----------------------hhHHHHHcCccHHH----HHHHHHHHhHHHHHHHHHHHHHHH
Confidence                 0   000000                       0001111 111111    11111111111111 111111110


Q ss_pred             CCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcch--hHHHHHH
Q 015075          238 SGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTVL  315 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  315 (413)
                               ..+.   ++........+..+..+++.++.|++.||+|||+.+..+.+...+....+...++  .......
T Consensus       234 ---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (377)
T TIGR00890       234 ---------SLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLAT  301 (377)
T ss_pred             ---------HcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence                     0111   1111122234555667788999999999999998877766655544443333221  1111111


Q ss_pred             HHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  388 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  388 (413)
                      .....++.....+....+.+|.+|++.|+++.|+.+...++++.++|.+.+.+.+..+....+.+.+++.+++
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            2222233333344556788999999999999999999999999999999998888777666666655555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=5.7e-26  Score=219.82  Aligned_cols=350  Identities=16%  Similarity=0.186  Sum_probs=201.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .++++++|+++||+|||+++..+.++++++.++.++++    +++.+++.|+++|++.|.. +.....+.|++|+++|++
T Consensus        77 ~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~  156 (452)
T PRK11273         77 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  156 (452)
T ss_pred             HHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHH
Confidence            46889999999999999999999999999999888764    7888999999999988764 656677899999999999


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGTI-FEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~~-~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      .+++++.+..+|.. .+++++..+....+||+.|++.+++.++. .+..+++||+|+....+.+ +|.+           
T Consensus       157 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-----------  224 (452)
T PRK11273        157 IVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK-----------  224 (452)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh-----------
Confidence            99999999998864 44444333333459999999888776654 5566778998864211100 0000           


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchh-hhhccchhhhHHHHHHHHHHHHHHHhhhHHh-h
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSF-FMLFSRKLIRTTLLLWVLFFANVFSYYGAVL-L  232 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  232 (413)
                      ++.+      + +.+.+++     ++             ++..+.+ +..++.+...   ......+.....+++... .
T Consensus       225 ~~~~------~-~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~  276 (452)
T PRK11273        225 NDYP------D-DYNEKHE-----QE-------------LTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDWS  276 (452)
T ss_pred             hccc------c-ccccccC-----CC-------------ccHHHHHHHHHHcChHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            0000      0 0000000     00             0000000 1111111111   111111111122222222 2


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--ChhHHHH-HHHHHHHHHHHHHHh--cc
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMV-LMFVSACIFLLPLVF--HQ  307 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~-~~~~~~~~~~~~~~~--~~  307 (413)
                      +..+..        ..+.+....+   ....+..++.+++.++.|+++||+  +||.... ..+....+....+..  ..
T Consensus       277 P~~l~~--------~~g~s~~~~~---~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~  345 (452)
T PRK11273        277 PTYLKE--------VKHFALDKSS---WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAG  345 (452)
T ss_pred             HHHHHH--------hcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhccc
Confidence            222211        1122212111   223345566778899999999999  5554322 211111111111111  11


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhH-HHHHHHHHhhccchhHHHHHHHHHHH
Q 015075          308 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFV  386 (413)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~  386 (413)
                      +........+.......+.......+..|.+|++.|+++.|+.+..+++++.+ +|.+.+.+.|..+....+++..++++
T Consensus       346 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~  425 (452)
T PRK11273        346 NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI  425 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHH
Confidence            22222222222222222222233445679999999999999999999998765 79999999888877777777766666


Q ss_pred             HHHHHhh-cccccccCc
Q 015075          387 LAIASSL-LFPFETMGR  402 (413)
Q Consensus       387 ~~~~~~~-~~~~et~~~  402 (413)
                      ++.+... +..+|+|++
T Consensus       426 ~~~~~~~~~~~~~~~~~  442 (452)
T PRK11273        426 LAVILLIVVMIGEKRHH  442 (452)
T ss_pred             HHHHHHHHHhccccchH
Confidence            6655554 444555543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.95  E-value=7.2e-26  Score=220.05  Aligned_cols=330  Identities=12%  Similarity=0.069  Sum_probs=192.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      .+|+++.|+++||+|||+++..+.++++++.+++++++++..+++.|+++|++.+.......++.|++|+++||+++++.
T Consensus        85 ~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~  164 (476)
T PLN00028         85 IFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIA  164 (476)
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHH
Confidence            35788999999999999999999999999999999999999999999999998876544456789999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHh----c-----CCChHHHHHHhhHHHHHHHHHhhcCCC-CchHHhhccChHHHHHHHHHHHH
Q 015075           82 SAFWTAGTIFEASLAWVVM----T-----RLNWRWLLAFSSVPSFALLLFYGLAPE-SPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~----~-----~~~Wr~~f~~~~i~~~~~~~~~~~~pE-sp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      .....+|..+++.+...+.    .     ..|||+.|++.+++.++..+..++++| .|+     ++.++       ..+
T Consensus       165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~-------~~~  232 (476)
T PLN00028        165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRE-------LKK  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----Cchhh-------HHh
Confidence            8777777776655544332    1     258999999988887765544444443 332     00000       000


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHHHhhhHH
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYGAV  230 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (413)
                                         +.+.    ++.             +....++..+ .++.    ...+..++......+...
T Consensus       233 -------------------~~~~----~~~-------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  272 (476)
T PLN00028        233 -------------------SGTM----PKD-------------SFSKVLRYGVTNYRT----WILALTYGYSFGVELTMD  272 (476)
T ss_pred             -------------------cCcc----ccc-------------cHHHHHHHHHcCchh----HHHHHHHHHHHHHHHHHH
Confidence                               0000    000             0000111111 1121    112222222222212211


Q ss_pred             h-hhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhH-------HHHHHHHHHHHHHHH
Q 015075          231 L-LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL-------SMVLMFVSACIFLLP  302 (413)
Q Consensus       231 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~  302 (413)
                      . .+.++.        +.++.+..   .......+..++..++.+++|+++||++||.       .......+..+.++.
T Consensus       273 ~~~p~~l~--------~~~g~s~~---~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~  341 (476)
T PLN00028        273 NIIAEYFY--------DRFGLSLE---TAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIW  341 (476)
T ss_pred             hHHHHHHH--------HhcCCCHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Confidence            1 112111        01111111   1122334556677889999999999998752       222222222222222


Q ss_pred             HHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHH
Q 015075          303 LVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFE  382 (413)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~  382 (413)
                      +....+.......++...++.....+..+.+.+|+.| +.|++..|+.+..+++|++++|.+.+ ..+..++...+++++
T Consensus       342 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~  419 (476)
T PLN00028        342 LGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMG  419 (476)
T ss_pred             hcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHH
Confidence            2222222222222222223333344556677778765 68999999999999999988887654 212223456677777


Q ss_pred             HHHHHHHHHhhccc
Q 015075          383 VVFVLAIASSLLFP  396 (413)
Q Consensus       383 ~~~~~~~~~~~~~~  396 (413)
                      ++.+++.++.++..
T Consensus       420 ~~~~i~~~~~~~~~  433 (476)
T PLN00028        420 VMIIACTLPVAFIH  433 (476)
T ss_pred             HHHHHHHHHHHhee
Confidence            77777766666553

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.6e-25  Score=202.23  Aligned_cols=320  Identities=19%  Similarity=0.258  Sum_probs=213.1

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +|+++...+.||+.||++++..+.++.++++++++++||+.++++|++.|++.|.+ +...++..+..||++|+++.++.
T Consensus        63 i~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv  142 (394)
T COG2814          63 LGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALV  142 (394)
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHH
Confidence            67888899999999999999999999999999999999999999999999999986 67788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      ..+..++.++|.+++.++.+.+|||+.|+..+..+++. ...+..+|  |+-.                     .+.+  
T Consensus       143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------~~~~--  197 (394)
T COG2814         143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI---------------------SGSL--  197 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------CCCC--
Confidence            99999999999999999999999999999988888765 55667777  3200                     0000  


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD  240 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  240 (413)
                            +.+.                          .+.++.+.+++... .......++...+..|  .+..+.+.   
T Consensus       198 ------~~~~--------------------------~~~~~~l~~p~v~~-~l~~t~l~~~g~F~~f--tYi~P~L~---  239 (394)
T COG2814         198 ------PGPL--------------------------RTLLRLLRRPGVLL-GLLATFLFMTGHFALY--TYIRPFLE---  239 (394)
T ss_pred             ------Ccch--------------------------hHHHHHhcCchHHH-HHHHHHHHHcchhhhH--HhHHHHHH---
Confidence                  0000                          00111122222222 2222222222211111  12222221   


Q ss_pred             CccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHH
Q 015075          241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQSAVVTTVLLFGV  319 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  319 (413)
                           +..+++.   ..........+++..+|.+++|++.|| +.|+.+..........+..+.+ ..+........+..
T Consensus       240 -----~v~g~s~---~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~w  310 (394)
T COG2814         240 -----SVAGFSV---SAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLW  310 (394)
T ss_pred             -----HccCCCH---hHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence                 1112211   223345567788889999999999999 6666655554443333333333 23333333333332


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      .+.............++ .-++.+..+.++.....|+|..++..+.+..+++.+.....+.-+++.+++.++....
T Consensus       311 g~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         311 GFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222223344445 3357799999999999999999999999999998776666666666666665555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.95  E-value=2.3e-25  Score=216.60  Aligned_cols=339  Identities=13%  Similarity=0.185  Sum_probs=202.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS--PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a--~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      .+++++.|+++||+|||+++..+.++++++.+++.++  .++..+++.|+++|++.|.. +....++.||+|+++|++.+
T Consensus        90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  169 (465)
T TIGR00894        90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL  169 (465)
T ss_pred             HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence            3678899999999999999999999999999887544  56888999999999999875 67788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHhhHHHHHHHHH-hhcCCCCchHHhhccChHHHHHHHHHHHHHcCCC
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDAHRILEKMAFVNQTK  156 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~-~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~  156 (413)
                      ++...+..+|.++++++++.+.+. .+||+.|++.+++.+++.+. +.+.+|+|+... +.+.+|.    +.+....   
T Consensus       170 ~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~----~~i~~~~---  241 (465)
T TIGR00894       170 GMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK----KYINSSL---  241 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH----HHHHhhc---
Confidence            999999999999999999988887 49999999998888766544 444667775211 0110000    0000000   


Q ss_pred             CCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh-hhh
Q 015075          157 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL-TSK  235 (413)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  235 (413)
                                    ++++    ++             +.....++..++.+..   ...+...++....++....+ +.+
T Consensus       242 --------------~~~~----~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lp~~  287 (465)
T TIGR00894       242 --------------QGQK----GS-------------TRQSLPIKAIPKSLPV---WAIWFAIFGHFWLYTILPTYLPTF  287 (465)
T ss_pred             --------------cccc----CC-------------CCCCCCHHHHhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0000    00             0000122333322221   11222223333333322222 222


Q ss_pred             ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHH--------HHHHH--HHHHHHHHHHHh
Q 015075          236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS--------MVLMF--VSACIFLLPLVF  305 (413)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~--------~~~~~--~~~~~~~~~~~~  305 (413)
                      +.        +.++.+....+.   ...+..++..++.++.|+++||.++|+.        +..+.  .......+....
T Consensus       288 l~--------~~~g~s~~~~g~---~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (465)
T TIGR00894       288 IS--------WVLRVSGKENGL---LSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY  356 (465)
T ss_pred             HH--------HHhCcChHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21        112222222222   2334456677889999999999764421        11111  111111111111


Q ss_pred             -cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc--c-hhHHHHHH
Q 015075          306 -HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--H-LRLAVILF  381 (413)
Q Consensus       306 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~--~-~~~~~~~~  381 (413)
                       ..+......++.....+..+..+..+....|..|+ .++++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.
T Consensus       357 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~  435 (465)
T TIGR00894       357 LSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIM  435 (465)
T ss_pred             cCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHH
Confidence             12222222222222222222334455566677775 8999999999999999999999988776643  2 33455556


Q ss_pred             HHHHHHHHHHhhc
Q 015075          382 EVVFVLAIASSLL  394 (413)
Q Consensus       382 ~~~~~~~~~~~~~  394 (413)
                      +++.+++.++..+
T Consensus       436 ~~~~~i~~i~~~~  448 (465)
T TIGR00894       436 AFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHeee
Confidence            6666666555444

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=1.7e-25  Score=212.86  Aligned_cols=332  Identities=13%  Similarity=0.138  Sum_probs=210.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|+++.|++.||+|||+++..+.+++.++.+++++++|++.+++.|+++|++.|.. +...+++.|++|+++|++..+.
T Consensus        56 ~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~  135 (394)
T PRK03699         56 LISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLF  135 (394)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999988864 5667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVM-TRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~-~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      ......+|..++|.+.+.+. +..+||+.|.+.+++.++..+..++ .+.|+.  ++++                     
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~---------------------  191 (394)
T PRK03699        136 TDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA---------------------  191 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC---------------------
Confidence            88888899888888877654 4679999999877776554433322 222220  0000                     


Q ss_pred             CccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (413)
                           +   +  ++++   +             .+..+       .    +.........+.....++....+.+.+.  
T Consensus       192 -----~---~--~~~~---~-------------~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~p~~l--  232 (394)
T PRK03699        192 -----P---K--ADKP---V-------------AKEKW-------G----IGVLFLAIAALLYILAQLTFISWVPEYA--  232 (394)
T ss_pred             -----c---c--ccCc---c-------------ccccC-------C----hHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence                 0   0  0000   0             00000       0    1111122222222223333222222111  


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV  319 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (413)
                           .+.++.+..+.+..   .....++..+|.++.++++||++||+.+.....+..+.+..+...++........+..
T Consensus       233 -----~~~~g~s~~~~~~~---~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (394)
T PRK03699        233 -----QKKFGMSLEDAGNL---VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGL  304 (394)
T ss_pred             -----HHHcCCChHHhhHH---HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence                 01122222222221   2233445677899999999999999887766555544333333333332222233333


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .++..+..+....+..|..|.+ ++...|..+.++++|+.++|.+.+++.+..+....++..+++.+++.+.+.+ .+.+
T Consensus       305 G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~  382 (394)
T PRK03699        305 GFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL-LGFV  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH-HHHH
Confidence            3444445555556667777644 6778899999999999999999999988877777777766666666554444 3566


Q ss_pred             cCcchhh
Q 015075          400 MGRELKD  406 (413)
Q Consensus       400 ~~~~l~~  406 (413)
                      .+|.++.
T Consensus       383 ~~~~~~~  389 (394)
T PRK03699        383 SKHRQHG  389 (394)
T ss_pred             HHHHhcc
Confidence            5555443

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=7.2e-25  Score=208.54  Aligned_cols=315  Identities=18%  Similarity=0.139  Sum_probs=196.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hh-----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SF-----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~-----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .++++++|+++||+|||+++..+.+.+.++.+..   +.     .+|++.+++.|+++|++.+.. +...+++.|+.|++
T Consensus        65 ~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  144 (392)
T PRK12382         65 VLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK  144 (392)
T ss_pred             HHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            3578899999999999999999888777665432   22     357899999999999998865 56667889999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFV  152 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~  152 (413)
                      +|+++++..+.+...|..+++++++.+.+..|||+.+.+..+..++........||.++.   ++               
T Consensus       145 ~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------  206 (392)
T PRK12382        145 HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AG---------------  206 (392)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---cc---------------
Confidence            999999999999999999999999988888999998776555443333332233332210   00               


Q ss_pred             cCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh
Q 015075          153 NQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL  232 (413)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (413)
                                  +    +++.                    +   +..+..+.+..   ...+...... ....+...++
T Consensus       207 ------------~----~~~~--------------------~---~~~~~~~~~~~---~~~l~~~~~~-~~~~~~~~~~  243 (392)
T PRK12382        207 ------------E----RPSL--------------------W---SVVGLIWKPGL---GLALQGVGFA-VIGTFVSLYF  243 (392)
T ss_pred             ------------c----CchH--------------------H---HHHHHHHHhHH---HHHHHHHHHh-HHHHHHHHHH
Confidence                        0    0000                    0   00000000000   0000000000 0111111111


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVT  312 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (413)
                      ..             .+.  +..+   .......++.+++.++.|++.||+|||+.+..+.....+....+...++....
T Consensus       244 ~~-------------~~~--~~~~---~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (392)
T PRK12382        244 AS-------------KGW--AMAG---FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVA  305 (392)
T ss_pred             Hh-------------cCC--chhH---HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHH
Confidence            10             011  1111   12233445567788899999999999887776655544444333333333222


Q ss_pred             HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Q 015075          313 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  392 (413)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  392 (413)
                      .........+.....+.......|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+++.+++.+..
T Consensus       306 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        306 LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            22222222222223344556677899999999999999999999999999999998888777777777777777666655


Q ss_pred             hcc
Q 015075          393 LLF  395 (413)
Q Consensus       393 ~~~  395 (413)
                      ++.
T Consensus       386 ~~~  388 (392)
T PRK12382        386 ILS  388 (392)
T ss_pred             Hhh
Confidence            544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=3.9e-25  Score=213.22  Aligned_cols=350  Identities=16%  Similarity=0.174  Sum_probs=205.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .+++++.|+++||+|||+++..+.++.+++.++.++.    +++..+.+.|++.|++.|.. +....++.|++|+++||+
T Consensus        75 ~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~  154 (438)
T TIGR00712        75 GFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGT  154 (438)
T ss_pred             HHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchh
Confidence            3678999999999999999999999999998887764    46778889999999988864 666778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVM-TRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~-~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      .+++.+....+|..+++.+..... ...+||+.|++.+++.++. ....+++||+|+....++.  +..         + 
T Consensus       155 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~---------~-  222 (438)
T TIGR00712       155 IVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI--EEY---------R-  222 (438)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc--hhc---------c-
Confidence            999999999999998887765543 3579999999988877664 4556667888763210000  000         0 


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhh-
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT-  233 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  233 (413)
                      ++.+.       +..++++.         +     . +.++.  ..+..++.+....   .....+.....+++...+. 
T Consensus       223 ~~~~~-------~~~~~~~~---------~-----~-~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p  275 (438)
T TIGR00712       223 NDYPD-------DYNEKAEQ---------E-----L-TAKEI--FMQYVLPNKLLWY---IAIANVFVYLLRYGVLDWSP  275 (438)
T ss_pred             ccccc-------cccccccc---------c-----c-chHHH--HHHHHccCchHHH---HHHHHHHHHHHHHHHHHhHH
Confidence            00000       00000000         0     0 00000  0011111111111   1111111111222222222 


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHH---HHHHHHHHhc--ch
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSA---CIFLLPLVFH--QS  308 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~---~~~~~~~~~~--~~  308 (413)
                      .++..        ..+.+....   .....+..+..+++.++.|+++||+++++....+....   ......+...  .+
T Consensus       276 ~~l~~--------~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (438)
T TIGR00712       276 TYLKE--------VKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN  344 (438)
T ss_pred             HHHHH--------ccCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            22110        111111111   12234455667889999999999996432212222111   1111111111  12


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhH-hHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 015075          309 AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHLRLAVILFEVVFVL  387 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  387 (413)
                      ........+...+...+..........|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..+....+.+..++.++
T Consensus       345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~  424 (438)
T TIGR00712       345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  424 (438)
T ss_pred             hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence            22211222222222222222223456799999999999999999999876 57899999888887776777777777777


Q ss_pred             HHHHhhcccccccC
Q 015075          388 AIASSLLFPFETMG  401 (413)
Q Consensus       388 ~~~~~~~~~~et~~  401 (413)
                      +.+..++..||.|+
T Consensus       425 ~~~~~~~~~~~~~~  438 (438)
T TIGR00712       425 AVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHHHHHHhhccC
Confidence            87888888888763

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=6.9e-25  Score=206.26  Aligned_cols=305  Identities=17%  Similarity=0.154  Sum_probs=197.4

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc-----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~-----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      ++++++|+++||+|||+++..+.++..++.++.++++     |++.+++.|+++|++.+.. +...+++.|++|+++|++
T Consensus        49 i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  128 (365)
T TIGR00900        49 VLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQ  128 (365)
T ss_pred             HHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5678899999999999999999999999998888887     9999999999999998865 667789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc--CCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL--APESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~--~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      ..++.+....+|.++++.+++.+.+..|||+.|++.++..++..+..+.  .||+++    +++.               
T Consensus       129 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------  189 (365)
T TIGR00900       129 ANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEIQ---------------  189 (365)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----cccc---------------
Confidence            9999999999999999999999988899999998887766554433332  233221    0000               


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH-hhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLT  233 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  233 (413)
                                  +.+++..++                    ..+.++..++++..+........   ....+.... .+.
T Consensus       190 ------------~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  234 (365)
T TIGR00900       190 ------------ALSNAVLRD--------------------TREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALF  234 (365)
T ss_pred             ------------ccchhHHHH--------------------HHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence                        000000000                    00011222222222221111111   111111110 111


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcch-hHHH
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS-AVVT  312 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~  312 (413)
                      +.+..       +.++.+.   ...........++.+++.++.+++.||.+||+....+.+...+....+....+ .+..
T Consensus       235 ~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (365)
T TIGR00900       235 PYVQS-------KYLGRGS---THYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLF  304 (365)
T ss_pred             HHHHH-------HHhCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHH
Confidence            11100       0011111   11122233455667788899999999999998877665555444443333322 2222


Q ss_pred             HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          313 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      ....+...++.....+....+..|..|++.|+++.|+.+.+.++++.++|.+.+.+.|.
T Consensus       305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       305 LVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23333333444444556778899999999999999999999999999999999888764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.94  E-value=2.3e-24  Score=203.80  Aligned_cols=319  Identities=16%  Similarity=0.172  Sum_probs=195.9

Q ss_pred             cccchhhHhhhhcCChHHHHH-HHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH--H
Q 015075            3 LGAYSWGIISDNYGRRKSFLG-IAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW--M   78 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~-~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~--~   78 (413)
                      +.+++.|+++||+|||+.++. +.++..++.++.++++|++.+++.|+++|.+.+.. |...++..|+.|+++|++.  .
T Consensus        48 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  127 (375)
T TIGR00899        48 AVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFS  127 (375)
T ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHH
Confidence            456788999999999887654 55556677788899999999999999998776654 6666788899888887754  5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCC
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKL  157 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~  157 (413)
                      +....+.++|.++++++++.+.+..+||+.|++.+++.++.. ..++++||+|+...++                     
T Consensus       128 ~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  186 (375)
T TIGR00899       128 SVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA---------------------  186 (375)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc---------------------
Confidence            777788899999999999998888999999999888766553 4445588876421000                     


Q ss_pred             CCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHH-HhhhHHhhhhhc
Q 015075          158 PPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVF-SYYGAVLLTSKL  236 (413)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  236 (413)
                             +   +..+.+                        .  ...+++.+.........+..... ..+...+...  
T Consensus       187 -------~---~~~~~~------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  228 (375)
T TIGR00899       187 -------L---TRLEVR------------------------G--LLASRDTRLLFVACTLMWGCNILYIINMPLLIIH--  228 (375)
T ss_pred             -------c---Ccchhh------------------------h--hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHH--
Confidence                   0   000000                        0  00011111111111111111111 1111111111  


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL  316 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (413)
                                .++.+....+   ..........+++.++.|++.||+|||+.+..+.+........+...++.+......
T Consensus       229 ----------~~g~~~~~~g---~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (375)
T TIGR00899       229 ----------ELGLPDKLAG---LMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQ  295 (375)
T ss_pred             ----------HcCCCHHHHH---HHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1111111111   112223334566778899999999999987766555444333333333333222222


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhc
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  394 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (413)
                      ....++.....+....+..|..|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+.+++.+++.+...+
T Consensus       296 ~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       296 LLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            2222333333455667788988875 5699999999999999999999998888777666666666666666555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=1.6e-24  Score=207.29  Aligned_cols=329  Identities=16%  Similarity=0.170  Sum_probs=208.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      .++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+..+....++.|+.|+++|++..+..
T Consensus        68 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (408)
T PRK09874         68 AIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTL  147 (408)
T ss_pred             HHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999997655566667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      .....+|..+++.+++.+.+..+||+.|++.++..++.. ...++.||+++..   ++.+                    
T Consensus       148 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------  204 (408)
T PRK09874        148 STGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKE--------------------  204 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchh--------------------
Confidence            999999999999999998888999999998877765543 3445566643210   0000                    


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGD  240 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  240 (413)
                            +.+.++                          ..+.+.+++.............. ..... ..+...+...  
T Consensus       205 ------~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~--  248 (408)
T PRK09874        205 ------MLHMRE--------------------------VVTSLKNPKLVLSLFVTTLIIQV-ATGSI-APILTLYVRE--  248 (408)
T ss_pred             ------hhHHHH--------------------------HHHhCcCCchHHHHHHHHHHHHH-HHHHH-HHHHHHHHHH--
Confidence                  000000                          00001111111111111111000 00000 0111111100  


Q ss_pred             CccCccccccCCCCChh-HHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q 015075          241 NKCGSKVLHADKSKDNS-LYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGV  319 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (413)
                             .......... ......+..++.+++....|+++||+|||+.+..+.....+..+.....++.+......+..
T Consensus       249 -------~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (408)
T PRK09874        249 -------LAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLL  321 (408)
T ss_pred             -------HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                   0000000000 01112233445566777889999999999888776665544444333333333222222223


Q ss_pred             HHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075          320 RMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (413)
                      .++.....+....+..+..|++.|+...++.+.+..+|..++|.+.+.+.+..+....+...+++.+++.+..++..
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        322 GAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445556678889999999999999999999999999999888877777777777777777766665543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.94  E-value=2.9e-24  Score=200.77  Aligned_cols=300  Identities=24%  Similarity=0.360  Sum_probs=217.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+.. +...+++.|++|+++|++..++
T Consensus        48 ~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (352)
T cd06174          48 ALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL  127 (352)
T ss_pred             HHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhH
Confidence            367889999999999999999999999999999999999999999999999998875 6777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      ......+|..+++.+++.+.+..+||+.+++.+++.++......+.+  |+.                            
T Consensus       128 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----------------------------  177 (352)
T cd06174         128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--RLL----------------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHH----------------------------
Confidence            99999999999999999998888999999988887766554443332  100                            


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH-HHHHHhhhHHhhhhhccCC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF-ANVFSYYGAVLLTSKLSSG  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  239 (413)
                                                                      ............ .+....+...+....    
T Consensus       178 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  205 (352)
T cd06174         178 ------------------------------------------------LLLALAFFLLSFGYYGLLTYLPLYLQEV----  205 (352)
T ss_pred             ------------------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHh----
Confidence                                                            000000000000 011111111111110    


Q ss_pred             CCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 015075          240 DNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL-SMVLMFVSACIFLLPLVFHQSAVVTTVLLFG  318 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (413)
                              .+.   +............+...++.++.+++.||+|||+ .+..+.....+....+...++..........
T Consensus       206 --------~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  274 (352)
T cd06174         206 --------LGL---SAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL  274 (352)
T ss_pred             --------cCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence                    011   1111223344556677888999999999999998 7777766665555544443333333333444


Q ss_pred             HHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhc
Q 015075          319 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLL  394 (413)
Q Consensus       319 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (413)
                      ..++.....+....+..|..|++.|++..|+.+...++++.++|.+.+.+.+..+....+++.+++.+++.+..++
T Consensus       275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            4455555667788899999999999999999999999999999999998887777777777777777776665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.94  E-value=1.1e-23  Score=200.07  Aligned_cols=128  Identities=18%  Similarity=0.272  Sum_probs=113.3

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +++++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|.. +...+++.|++|+++|+++.++.
T Consensus        70 ~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~  149 (394)
T PRK10213         70 FASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVI  149 (394)
T ss_pred             HHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHH
Confidence            57888999999999999999999999999999999999999999999999998875 67778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCc
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESP  130 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp  130 (413)
                      ....++|.++++++++.+.+.+|||+.|++.++..++..+ .....||+|
T Consensus       150 ~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        150 FGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999999989999999988776655433 333466654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.94  E-value=5.6e-25  Score=207.88  Aligned_cols=323  Identities=16%  Similarity=0.220  Sum_probs=194.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++++++.++.+++++++.+++.|+++|++.|.. +...+++.|++|+++|++..++
T Consensus        44 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  123 (379)
T TIGR00881        44 GISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSF  123 (379)
T ss_pred             HhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEee
Confidence            467899999999999999999999999999999999999999999999999998864 6777899999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           81 LSAFWTAGTIFEA-SLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        81 ~~~~~~~G~~~~~-~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      .+.+..+|..+++ .++..+.+..+||+.|++.++..++. .+..++.||+|+..   +..++             ++.+
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~  187 (379)
T TIGR00881       124 WNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPA-------------EEMP  187 (379)
T ss_pred             hhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCcc-------------ccCc
Confidence            9999999999999 46666677789999998887766554 45556677776521   00000             0000


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHh-hhhhcc
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL-LTSKLS  237 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  237 (413)
                            +++.+.++++    +++.          .+......+.+++.+....   .....+........... .+..+.
T Consensus       188 ------~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  244 (379)
T TIGR00881       188 ------NEEPDGDAEK----KEEE----------LTKKQIFLQYVLLNKVLWY---ISLGYVFVYVVRTGILDWSPLYLT  244 (379)
T ss_pred             ------cccccccccc----cccc----------ccchHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0000000000    0000          0000011122222221111   11111111111111111 111111


Q ss_pred             CCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhC-hhHH-HHHHHHHH-HHHHHHHHh--cchhHHH
Q 015075          238 SGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG-RKLS-MVLMFVSA-CIFLLPLVF--HQSAVVT  312 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g-rr~~-~~~~~~~~-~~~~~~~~~--~~~~~~~  312 (413)
                              +..+.+..   ..........+..+++.++.+++.||.. ||+. ........ ...+.....  ..+....
T Consensus       245 --------~~~g~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
T TIGR00881       245 --------QEKGFSKE---KASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD  313 (379)
T ss_pred             --------HHhCCCHH---HHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence                    01111111   1112233455667889999999999863 3332 22211111 111111111  1122222


Q ss_pred             HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccch
Q 015075          313 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  374 (413)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~  374 (413)
                      ....+....+..+.....+.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+.
T Consensus       314 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  375 (379)
T TIGR00881       314 LICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW  375 (379)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence            22222333333344455567789999999999999999999999999999999988886654

>PRK10504 putative transporter; Provisional

Probab=99.94  E-value=1.2e-23  Score=205.14  Aligned_cols=348  Identities=12%  Similarity=0.087  Sum_probs=198.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++++++.++++++++++.+++.|+++|++.|.. +...+++.|++|+++|++..++
T Consensus        59 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (471)
T PRK10504         59 AVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTF  138 (471)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999998875 6777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHH------HHc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMA------FVN  153 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~------~~~  153 (413)
                      ......+|..+++.+++.+.++.|||+.|.+......+.. ......||++.   ++.|.|.+........      ..+
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~  215 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALD  215 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998999999998766554443 33344455432   1222222221111000      001


Q ss_pred             CCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhh
Q 015075          154 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT  233 (413)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (413)
                      +.+. .+..   ............-......  .++.. .++.....+.+.++++...........+.....++...++.
T Consensus       216 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  288 (471)
T PRK10504        216 GSKG-LGLS---PLAIAGLVAVGVVALLLYL--LHARN-NNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFL  288 (471)
T ss_pred             cCCc-CCcc---hHHHHHHHHHHHHHHHHHH--HHHhc-CCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000 0000   0000000000000000000  00000 00011122222223332221111111111111111111111


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh-c-chh-H
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-H-QSA-V  310 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~-~~~-~  310 (413)
                      ...           .+.+.   ...........+..+++..+.+++.||+|||+.+..+.+...+....+.. . .+. .
T Consensus       289 ~~~-----------~g~~~---~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (471)
T PRK10504        289 QIG-----------LGFSP---FHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYY  354 (471)
T ss_pred             HHH-----------cCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHH
Confidence            100           01111   11112223334445566678999999999999887766655444333322 1 121 1


Q ss_pred             HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc
Q 015075          311 VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  373 (413)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~  373 (413)
                      ......+...++.....+....+..+..|++.|+.+.|+.+...++|..++|.+.+.+++..+
T Consensus       355 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        355 LLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111122222232333344556777789999999999999999999999999998887766543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=2.1e-24  Score=211.20  Aligned_cols=348  Identities=15%  Similarity=0.188  Sum_probs=203.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.+++.++.+++++++|++.+++.|+++|++.|.. +...+++.|++|+++|++..++
T Consensus        51 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  130 (485)
T TIGR00711        51 AISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAI  130 (485)
T ss_pred             HHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            357788999999999999999999999999999999999999999999999998875 6778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHH------HHHc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKM------AFVN  153 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~------~~~~  153 (413)
                      +.....+|..+++.+++.+.++.+||+.|++.+++.++. .+..+..||+++-  ++++.|.....+...      ....
T Consensus       131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~  208 (485)
T TIGR00711       131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLS  208 (485)
T ss_pred             HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888776654 3444556775441  122222211111000      0000


Q ss_pred             CCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhh
Q 015075          154 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT  233 (413)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (413)
                      +.+. .+.. .+............    ........+.+.+.+....+.+..++........    +...+.++....+.
T Consensus       209 ~~~~-~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  278 (485)
T TIGR00711       209 EGPE-RGWF-DSNEILILSITGLV----AIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYM----SLLGLGLYGSFYLL  278 (485)
T ss_pred             hCCC-CCCC-CchHHHHHHHHHHH----HHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHH----HHHHHHHHHHHHHH
Confidence            0000 0000 00000000000000    0000000000001111122222233332222211    11222222222211


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH--hc-c-hh
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV--FH-Q-SA  309 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~--~~-~-~~  309 (413)
                      +.+..       +.++.+..+   .........+..+++.++.|++.||+|||+.+..+.....+....+.  .. + +.
T Consensus       279 p~~~~-------~~~g~s~~~---~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  348 (485)
T TIGR00711       279 PLYLQ-------QVLGYTALQ---AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPF  348 (485)
T ss_pred             HHHHH-------HhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCH
Confidence            11110       011111111   11223345566778899999999999999987776655544443333  11 1 11


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          310 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      ...........++.....+.......+..|++.|+++.|+.+....+|+.+++.+.+.+.+.
T Consensus       349 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       349 LAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21222222222222222333444556788999999999999999999999999888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.93  E-value=1.7e-23  Score=203.78  Aligned_cols=329  Identities=17%  Similarity=0.184  Sum_probs=204.1

Q ss_pred             cccchhhHhhhhc-----CChHH-HHHHHHHHHHHHHHHhhc---ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            3 LGAYSWGIISDNY-----GRRKS-FLGIAMVTSVAGLLSSFS---PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         3 ~G~~~~g~l~Dr~-----Grr~~-~~~~~~l~~~~~~~~~~a---~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      +++++||+++||+     |||+. +..+.+..+++..+.++.   .+++.+.+.|++.|++.+.. +...++..|++|++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4678999999999     99986 667777777777777775   46888999999999977664 56678999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMT-RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~-~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      +||+..++.+.++.+|.++++.++..+.+ ..|||..|++.++..++..+..++.||+++..   ++ ++          
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~----------  205 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK----------  205 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc----------
Confidence            99999999999999999999999888887 57999999998887766655555678865310   00 00          


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHh
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL  231 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (413)
                                    +. ++ .                       ....++++++++...........+...  .+.....
T Consensus       206 --------------~~-~~-~-----------------------~~~~l~~~~~~~~~~~~ll~~~l~~~~--~~~~~~~  244 (491)
T PRK11010        206 --------------TL-EQ-A-----------------------VVAPLRDFFGRNNAWLILLLIVLYKLG--DAFAMSL  244 (491)
T ss_pred             --------------ch-hh-h-----------------------HHHHHHHHHcCcCHHHHHHHHHHHHHH--HHHHHHH
Confidence                          00 00 0                       000111122222111111111111111  0001111


Q ss_pred             hhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH---HHhc-c
Q 015075          232 LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLP---LVFH-Q  307 (413)
Q Consensus       232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~---~~~~-~  307 (413)
                      ..+.+.        +..+.+....+  ........++.++|.+++|+++||+|||+.+..+.+...+....   +... +
T Consensus       245 ~~~~l~--------~~~G~s~~~~g--~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~  314 (491)
T PRK11010        245 TTTFLI--------RGVGFDAGEVG--LVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK  314 (491)
T ss_pred             HHHHHH--------HhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            111111        01112111111  11112334567789999999999999887665544432222211   1122 2


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 015075          308 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  387 (413)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  387 (413)
                      +........+...++.....+..+++..++.|++.+++..|+.++...+++.+++.+.+.+.+..+....+.+..+++++
T Consensus       315 ~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~  394 (491)
T PRK11010        315 NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP  394 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            22221112222222222233445777889999999999999999999999888888889998887766667777777777


Q ss_pred             HHHHhhccc
Q 015075          388 AIASSLLFP  396 (413)
Q Consensus       388 ~~~~~~~~~  396 (413)
                      +.+...++.
T Consensus       395 ~l~~~~~~~  403 (491)
T PRK11010        395 GLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHH
Confidence            766666553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.93  E-value=1.5e-24  Score=209.65  Aligned_cols=338  Identities=13%  Similarity=0.113  Sum_probs=195.2

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHH-HHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVI-FRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~-~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      +++++.|+++||+|||++++.+.++++++.++++++++++.+++ .|+++|++.|.. +....++.|++| ++|++..++
T Consensus        69 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~  147 (455)
T TIGR00892        69 AGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGL  147 (455)
T ss_pred             HhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence            56788999999999999999999999999999999999998875 579999998864 555677889986 789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc-CCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL-APESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~-~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      .+.+..+|..+++++++.+.+.+|||+.|++.++..++..+..++ .++.+..  ++.+ ++.           +++.+.
T Consensus       148 ~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~-----------~~~~~~  213 (455)
T TIGR00892       148 AMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK-SKS-----------KEGLPP  213 (455)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc-ccc-----------cccCCC
Confidence            999999999999999998888899999999988877654333333 3322210  0000 000           000000


Q ss_pred             CccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHh-hhhhccC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL-LTSKLSS  238 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  238 (413)
                           +...++ .+.     .  .     ..++ ......++.+.++++....    ...+...+.++.... +..+.. 
T Consensus       214 -----~~~~~~-~~~-----~--~-----~~~~-~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~l~~~~~-  269 (455)
T TIGR00892       214 -----DGSTKK-LSK-----K--S-----TAEK-INRFLDFSLFTHRGFLVYL----SGNVIMFLGFFAPIIFLVPYAK-  269 (455)
T ss_pred             -----CCcccc-ccc-----c--c-----hhhh-hhhhcchHHhcCchHHHHH----HHHHHHHHHccchHHHHHHHHH-
Confidence                 000000 000     0  0     0000 0001111222223222111    111112222222211 111111 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--ChhHHHHH--HHHHHHHHHHHHHhcchhHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVL--MFVSACIFLLPLVFHQSAVVTTV  314 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  314 (413)
                      .        .+.+.   ........+.+++.+++.++.+++.||.  ++|+....  +.+..++..+......+.+....
T Consensus       270 ~--------~g~s~---~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       270 D--------KGVDE---YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             H--------cCCCH---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            0        11111   1111223345566677788889999973  33332222  22222222222222233332222


Q ss_pred             HHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH
Q 015075          315 LLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA  390 (413)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
                      ..+...++.....+..+.+..|.+|++.++++.|+.+....++++++|.+.+.+.+..+ ....+.+.+++.+++.+
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            23333333334445567788899999999999999999999999999999988877654 44455555544444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=2.4e-24  Score=201.58  Aligned_cols=301  Identities=24%  Similarity=0.395  Sum_probs=190.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|+++|++.+.. +...+++.|++|+++|++..++
T Consensus        46 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  125 (352)
T PF07690_consen   46 ALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGI  125 (352)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhcccc
Confidence            357889999999999999999999999999777777788889999999999998765 6778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      ......+|.++++.+++.+.+..+||+.|++.++..++..+ ...+.+|+|+...++.+                     
T Consensus       126 ~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~---------------------  184 (352)
T PF07690_consen  126 LSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP---------------------  184 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS---------------------
T ss_pred             ccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc---------------------
Confidence            99999999999999999988888999999999888877644 33555555431100000                     


Q ss_pred             Cccccchhhhhhhhccccccccccchhhhcchhhccccch-hhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSS-FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                            ++.+ ++.                    ++.+.. ++.+++++...   ......+...+.++....+.+.+. 
T Consensus       185 ------~~~~-~~~--------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l-  233 (352)
T PF07690_consen  185 ------KESE-SKK--------------------PKPLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYL-  233 (352)
T ss_dssp             ------TTTT---H--------------------HHCCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ------cccc-ccc--------------------ccccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhh-
Confidence                  0000 000                    000111 22222222221   111111112112222211111110 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh---cchhHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVL  315 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  315 (413)
                            .+.++.+  ..........+..+...++.++.+++.||+++|+..........+....+..   .++.......
T Consensus       234 ------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (352)
T PF07690_consen  234 ------QEVLGFS--GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIA  305 (352)
T ss_dssp             ------CHHHHCC--THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHH
T ss_pred             ------hhccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                  1112222  0011122234455566677889999999999876665544444333333222   2222222333


Q ss_pred             HHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHH
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCP  362 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p  362 (413)
                      .+...++.....+....+..|..|++.|+++.|+.+.+.++++.++|
T Consensus       306 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  306 LFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33334444445667888999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.1e-24  Score=207.29  Aligned_cols=341  Identities=17%  Similarity=0.318  Sum_probs=216.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN--YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~--~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      +++++..|+++||+|-|+++..+.++++++++++..+.+  ++.+++.|++||++.|.. |....+.+.|.|++||++..
T Consensus        87 i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~  166 (466)
T KOG2532|consen   87 ILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFI  166 (466)
T ss_pred             HHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHH
Confidence            467888899999999999999999999999999987765  457899999999999975 78888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHhhHHHHHHHHHh-hcCCCCchHHhhccChHHHHHHHHHHHHHcCCC
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFY-GLAPESPRYLCAKARTVDAHRILEKMAFVNQTK  156 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~-~~Wr~~f~~~~i~~~~~~~~~-~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~  156 (413)
                      ++...+.++|.+++-++++.+.+. +||+++|++.++.++++.+++ ++.-|+|+-   +.+..+.  +++++.+     
T Consensus       167 ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~--El~~I~~-----  236 (466)
T KOG2532|consen  167 AILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEK--ELKYIEK-----  236 (466)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHH--HHHHHHh-----
Confidence            999999999999999999999887 999999999999998875554 555677752   1110000  0011100     


Q ss_pred             CCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhc
Q 015075          157 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL  236 (413)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (413)
                                      .+  .++           +..+.....++.+++.+.      .|..++......++..++..++
T Consensus       237 ----------------~k--~~~-----------~~~~~~~vP~~~i~ts~~------vwai~~~~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  237 ----------------GK--SEA-----------HVKKKPPVPYKAILTSPP------VWAIWISAFGGNWGFYLLLTYL  281 (466)
T ss_pred             ----------------cc--ccc-----------ccCCCCCCCHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence                            00  000           000001123444444332      3333333333333333333333


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhCh---------hHHHHHHHHHHHHHHHHHHhcc
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR---------KLSMVLMFVSACIFLLPLVFHQ  307 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr---------r~~~~~~~~~~~~~~~~~~~~~  307 (413)
                      ++    +..++++++..+.+..   ..+..+...+..+++|.++||+-+         |..-.+++.+..++++.+.+..
T Consensus       282 Pt----Y~~~VL~f~v~~~G~~---salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  282 PT----YLKEVLGFDVRETGFL---SALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             hH----HHHHHhCCChhhhhHH---HHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            32    2234556666555532   335555667788999999999854         2233345555555555544422


Q ss_pred             --hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc---chhHHHHHHH
Q 015075          308 --SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC---HLRLAVILFE  382 (413)
Q Consensus       308 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~---~~~~~~~~~~  382 (413)
                        +....+. ++....+..|........+.-...++..+...|+.+.++.+.++++|.+.+.+....   .+...|++.+
T Consensus       355 ~~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a  433 (466)
T KOG2532|consen  355 DEHRLLAVI-LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAA  433 (466)
T ss_pred             CCcchHHHH-HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHH
Confidence              2222222 222223333332222222222326788999999999999999999999998777321   2234455555


Q ss_pred             HHHHHHHHHhhcc
Q 015075          383 VVFVLAIASSLLF  395 (413)
Q Consensus       383 ~~~~~~~~~~~~~  395 (413)
                      ++.+++.+...++
T Consensus       434 ~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  434 GILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHhchheeEe
Confidence            5555554444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.93  E-value=2.4e-23  Score=197.24  Aligned_cols=129  Identities=16%  Similarity=0.245  Sum_probs=113.6

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++++++.+++++++|++.+++.|+++|++.|.. +....++.|++|+++|++.++.
T Consensus        52 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (382)
T PRK10091         52 VVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAG  131 (382)
T ss_pred             HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHH
Confidence            468899999999999999999999999999999999999999999999999998875 5556778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      +..+..+|..+++++++.+.+..+||+.|++.++..++. ...+..+||.+
T Consensus       132 ~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        132 MVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998888899999999988776554 33455677754

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=2.9e-23  Score=203.02  Aligned_cols=344  Identities=13%  Similarity=0.113  Sum_probs=196.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhc-cCCCcchHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFV-PVSHRGRWMVA   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~-p~~~Rg~~~~~   80 (413)
                      .+++++|+++||+|||+++..+.+++.++++++++++|++.++++|+++|+|.|.. +.....+.+++ |+++|++..++
T Consensus        56 ~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~  135 (495)
T PRK14995         56 GMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGV  135 (495)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999998765 55556666665 77899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHH------HHHHc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEK------MAFVN  153 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~------~~~~~  153 (413)
                      +.....+|..++|.+++.+.++.+|||.|++.....++. .+..+.+||+|+..  +++.|.....+..      .....
T Consensus       136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~  213 (495)
T PRK14995        136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAK  213 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999877665544 44556678876421  1111111111000      00000


Q ss_pred             CCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh-
Q 015075          154 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL-  232 (413)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  232 (413)
                      +..  .+... .............    ........+.+.+.+...++.+..+... ....   ..+.....+++...+ 
T Consensus       214 ~~~--~~~~~-~~~~~~~~~~~~~----~l~~f~~~e~~~~~p~~~~~lf~~~~~~-~~~~---~~~~~~~~~~~~~~~~  282 (495)
T PRK14995        214 TAL--KGFLS-LWVTSLTLLTGAL----LLGLFIRTQLAASRPMIDMRLFTHRIIL-SGVV---MAMTAMITLVGFELLM  282 (495)
T ss_pred             hcc--ccCCc-hHHHHHHHHHHHH----HHHHHHHHHhcCCCCCcCHHHhCCcccH-HHHH---HHHHHHHHHHHHHHHH
Confidence            000  00000 0000000000000    0000000000011111222222222222 1111   111122222222111 


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh--c-chh
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--H-QSA  309 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~-~~~  309 (413)
                      +.++.        ..++.+....+   .......+...++.++.|++.||+|||+.+..+.+...+....+..  . .+.
T Consensus       283 ~~~lq--------~v~g~s~~~ag---~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~  351 (495)
T PRK14995        283 AQELQ--------FVHGLSPLEAG---MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQ  351 (495)
T ss_pred             HHHHH--------HHcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence            11111        01112111112   2223344556778899999999999998877666555433322221  1 122


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          310 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      .......+..++......+.......+..|++.++.+.++.+...++|+.+++.+.+.+.+
T Consensus       352 ~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        352 WQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222232333333334455566788999999999999999999999999888776654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.93  E-value=5.4e-23  Score=195.65  Aligned_cols=128  Identities=20%  Similarity=0.238  Sum_probs=112.3

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +++++.|+++||+|||+.+..+.+++.++.++..++++++.+++.|+++|++.+.. +...+++.|++|+++|++..+..
T Consensus        53 ~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  132 (392)
T PRK10473         53 AAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLL  132 (392)
T ss_pred             HHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999998864 56778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      +....+|..+++.+++.+.+..+||+.|++.++..++. .+..+.+||++
T Consensus       133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999888878889999999887766554 33455667764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=1.7e-22  Score=193.07  Aligned_cols=128  Identities=16%  Similarity=0.215  Sum_probs=111.0

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +++++.|+++||+|||+++..+.+++.++.++.+++++++.+++.|+++|++.+.. +...+++.|++|+++|++..++.
T Consensus        63 ~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  142 (406)
T PRK15402         63 FLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALM  142 (406)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999988764 66678889999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCc
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESP  130 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp  130 (413)
                      .....+|..++|.+++.+.+..+||+.|++.++..++... .++..||++
T Consensus       143 ~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        143 ANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            8888889999999998888888999999988777665433 445567765

>TIGR00897 2A0118 polyol permease family

Probab=99.92  E-value=1.8e-22  Score=192.60  Aligned_cols=326  Identities=14%  Similarity=0.134  Sum_probs=190.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hh-cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SF-SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~-a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .++++++|++.||+|||+++..+.++++++.+++   ++ .++++.+++.|+++|++.+.. +....++.|++|+++||+
T Consensus        62 ~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~  141 (402)
T TIGR00897        62 AISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSS  141 (402)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHH
Confidence            3678899999999999999999999998887654   23 358889999999999988764 455677889999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGT-IFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~-~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      ++++.+.+.++|. ++++++++.+.+..||+..++.......+. .+..+..+|.++    +++.++             
T Consensus       142 ~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------  204 (402)
T TIGR00897       142 AVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT----PQHMQT-------------  204 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC----cccccC-------------
Confidence            9999999999997 578888888877788665555433222222 222233333221    000000             


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTS  234 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (413)
                                ++  +.++.                       ...++.+++.|...   ......+.+...+++...+.+
T Consensus       205 ----------~~--~~~~~-----------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p  246 (402)
T TIGR00897       205 ----------RE--KFSEL-----------------------GKAATILFTNPNVL---LGGMVRIINTIGLFGFAVFLP  246 (402)
T ss_pred             ----------Cc--chhhH-----------------------HHHHHHHHcChhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                      00  00000                       00011122211111   111122222223333222222


Q ss_pred             hccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHH-HHHHHHHHHHHHHH-----hcch
Q 015075          235 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-LMFVSACIFLLPLV-----FHQS  308 (413)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~-----~~~~  308 (413)
                      .+..        .++.+..+.+   .......+..+++.++.|+++||+|||+... .+.+...+....+.     ..++
T Consensus       247 ~~~~--------~~g~s~~~~~---~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       247 MFVA--------ELGFSTSEWL---QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHH--------HcCCChhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            1111        0112111111   1223445667889999999999999887653 22222222111111     1122


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 015075          309 AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  388 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  388 (413)
                      ........+....+..+..+ ......|..| +.|+++.|+.|...++++.++|.+.+.+.+..+....+++.+++.+++
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~  393 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS  393 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            22222222222222222222 2344567655 579999999999999999999999999988887777778887777777


Q ss_pred             HHHhhcc
Q 015075          389 IASSLLF  395 (413)
Q Consensus       389 ~~~~~~~  395 (413)
                      .+...|+
T Consensus       394 ~~~~~~~  400 (402)
T TIGR00897       394 AFLTAFI  400 (402)
T ss_pred             HHHHHHh
Confidence            6665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=2.6e-22  Score=190.42  Aligned_cols=129  Identities=23%  Similarity=0.354  Sum_probs=113.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.+.. +...+++.|++|+++|++..+.
T Consensus        54 ~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (385)
T TIGR00710        54 AAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSI  133 (385)
T ss_pred             HHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999998875 6677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      .+....+|..+++.+++.+.+..+||+.|++.++..++. ....+..||++
T Consensus       134 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       134 LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999998888899999998877766554 33445567764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.92  E-value=1.1e-22  Score=192.34  Aligned_cols=317  Identities=13%  Similarity=0.143  Sum_probs=190.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc-----ccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS-----PNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a-----~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++.++.|++.||+|+|+++..+.+++++.++.++++     ++++.+++.|++.|++.+..+.....+++|+|+++||++
T Consensus        85 l~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A  164 (462)
T PRK15034         85 LLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSA  164 (462)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHH
Confidence            345678999999999999999999999999999987     899999999999999833357778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----c-------------CCChHHHHHHhhHHHHHHHHH-hhcCCCCchHHhhccC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVM-----T-------------RLNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKAR  138 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~-----~-------------~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~~l~~~~~  138 (413)
                      .++.....++|..+++++...+.     .             ..+||...++-.++.++..+. ++.++|.|+   ++.+
T Consensus       165 ~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~  241 (462)
T PRK15034        165 LGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRAS  241 (462)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccC
Confidence            99997666667665554443321     2             234788777666666554433 333443221   0000


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHH
Q 015075          139 TVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL  218 (413)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (413)
                      .                               ++                          ....+..++.+    .+...
T Consensus       242 ~-------------------------------~~--------------------------~~~vlk~~~~W----llsll  260 (462)
T PRK15034        242 I-------------------------------AD--------------------------QLPVLQRLHLW----LLSLL  260 (462)
T ss_pred             H-------------------------------HH--------------------------HHHHhCCCchh----HHHHH
Confidence            0                               00                          00001111111    11122


Q ss_pred             HHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHH
Q 015075          219 FFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  298 (413)
Q Consensus       219 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  298 (413)
                      +++....|.+.....+.+...       .+  .   ........++..+...+...++|+++||+|+|+++..+++...+
T Consensus       261 y~~tFG~fvg~s~~lp~~~~~-------~~--~---~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i  328 (462)
T PRK15034        261 YLATFGSFIGFSAGFAMLAKT-------QF--P---DVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAI  328 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------Hc--C---hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHH
Confidence            222222222222111111100       00  0   01111223344555666778999999999999988877665544


Q ss_pred             HHHHH--Hhcc----hhHHHHHHHHHHHHHhhhhhhhhheeccccccc---------------------chhhhHHHHHH
Q 015075          299 FLLPL--VFHQ----SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT---------------------SARTTGFGVAS  351 (413)
Q Consensus       299 ~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~  351 (413)
                      .....  ....    +.......++...++.....+..+.++++++|+                     +..+...|+..
T Consensus       329 ~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~  408 (462)
T PRK15034        329 FSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFIS  408 (462)
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHH
Confidence            43221  1221    112222222222222222344567788888885                     25778899999


Q ss_pred             hhhhhhHhHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhhcc
Q 015075          352 SLGKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       352 ~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      .+|.+|+++-|.+.+...+.++. ...++.+.+..+++.++.+..
T Consensus       409 a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        409 AIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888877776654 455677777777666665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.92  E-value=1.3e-22  Score=192.58  Aligned_cols=325  Identities=12%  Similarity=0.062  Sum_probs=193.9

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +.+++.|+++||+|||+++..+.+++.+++++++++++.   ++.|+++|++.|.. |...+++.|++|+++|++++++.
T Consensus        53 l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~  129 (393)
T PRK11195         53 VLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWM  129 (393)
T ss_pred             HHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            567889999999999999999999999998888777664   78999999998875 77889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCc
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGI  161 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~  161 (413)
                      +.....|.++||.+++.+.+. .|+..+.+.+...++..+..+.+||+|+..  +++.++..+..++.            
T Consensus       130 ~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~------------  194 (393)
T PRK11195        130 EGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSWNPIALLRDF------------  194 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCCCHHHHHHHH------------
Confidence            999999999999999998764 488777766555444455556788876421  00000000000000            


Q ss_pred             cccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHH-HHHHHHHHHHHhhhHHhhhhhccCCC
Q 015075          162 LVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLL-LWVLFFANVFSYYGAVLLTSKLSSGD  240 (413)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  240 (413)
                                                         .+.++.+++.+..+.... ....+.......+....+.+..    
T Consensus       195 -----------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  235 (393)
T PRK11195        195 -----------------------------------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA----  235 (393)
T ss_pred             -----------------------------------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                                               000111222222221111 1111111111111111111111    


Q ss_pred             CccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q 015075          241 NKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR  320 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (413)
                             ++.+...   .........++.++|.++.+++.||.++|+.+..+.... .....+....+.+......+..+
T Consensus       236 -------lg~s~~~---~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G  304 (393)
T PRK11195        236 -------LGITLNQ---PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIG  304 (393)
T ss_pred             -------cCCChhH---HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHH
Confidence                   1121221   112234455667778888899999888887666654333 22222222223222222222222


Q ss_pred             HHhhhhhhhhheecccccccch-hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075          321 MCVTGTITVATIYAPEIYPTSA-RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       321 ~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (413)
                      ++.....+...+...|..|++. ++.+.++.+...+++..++..+.+. .+..+....+.+.++..++++...+.+.
T Consensus       305 ~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        305 ALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222334455567666654 7999999999999998888877663 4555655555555555555655555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.92  E-value=2e-22  Score=190.79  Aligned_cols=129  Identities=17%  Similarity=0.341  Sum_probs=114.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++.+++.+++.++++++.+++.|+++|++.+.. +...+++.|++|+++|++.+++
T Consensus        40 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (377)
T PRK11102         40 AIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSF  119 (377)
T ss_pred             HHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999988765 5667889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      .+....+|..+++.+++.+.+..+||+.|++.++..++. .+..+++||++
T Consensus       120 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        120 VTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999999999999999999888889999999887776654 44456677764

>PRK11043 putative transporter; Provisional

Probab=99.92  E-value=4e-22  Score=190.24  Aligned_cols=129  Identities=19%  Similarity=0.301  Sum_probs=112.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+.+..+..+..++.++++++++++.+++.|+++|++.+.. +...+++.|++|+++|++..+.
T Consensus        55 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (401)
T PRK11043         55 ALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFAT  134 (401)
T ss_pred             HHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999988764 4556788999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp  130 (413)
                      ......+|..+++.+++.+.+..|||+.|++.++..++..+..++.+|++
T Consensus       135 ~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        135 IMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            88888899999999999988889999999988877766655555556544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=5.3e-22  Score=188.73  Aligned_cols=321  Identities=14%  Similarity=0.174  Sum_probs=184.0

Q ss_pred             ccchhhHhhhhcCChHHH-HHHHHHHHHHHHHHhhcccHHHHHHHHH-HhhhcccchhHHHHHHHhhccCCCc--chHHH
Q 015075            4 GAYSWGIISDNYGRRKSF-LGIAMVTSVAGLLSSFSPNYVSLVIFRC-FVGVGLGGVPVFLAYFLEFVPVSHR--GRWMV   79 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~-~~~~~l~~~~~~~~~~a~~~~~l~~~R~-l~G~~~g~~~~~~~~~~E~~p~~~R--g~~~~   79 (413)
                      +.+..++ +||+|||+.+ ..+.++.+++..+.+++++++.+++.+. +.|.+....+....+..|+.|+++|  +...+
T Consensus        68 ~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (393)
T PRK15011         68 SQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSS  146 (393)
T ss_pred             HHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHH
Confidence            4444555 9999999875 4556666778888889999998766554 4455443346666777888877766  44557


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      ..+.+.++|.++++++++.+.++.|||..|+..++..++. .....+.||+|+-   +.+                    
T Consensus       147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------  203 (393)
T PRK15011        147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL--------------------  203 (393)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc--------------------
Confidence            8888999999999999999988899999999888766554 4445567876530   000                    


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                            + +.+.+..                    ++.        .++...........+... ..+.  ...+.++. 
T Consensus       204 ------~-~~~~~~~--------------------~~~--------~~~~~~~~~~~~~~~~~~-~~~~--~~~p~~l~-  244 (393)
T PRK15011        204 ------A-TGTLEAP--------------------RRN--------RRDTLLLFVICTLMWGTN-SLYI--INMPLFII-  244 (393)
T ss_pred             ------c-ccccccc--------------------ccc--------cccHHHHHHHHHHHHHHH-HHHH--HHHHHHHH-
Confidence                  0 0000000                    000        000011101111111110 0000  11111111 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFG  318 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (413)
                             +.++.+....+   ..........+++.++.|+++||+|||+.+..+.+........+...++........+.
T Consensus       245 -------~~~~~~~~~~g---~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        245 -------NELHLPEKLAG---VMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             -------HHcCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                   01111111111   11223334556788999999999999987766554443333222222222222222222


Q ss_pred             HHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccc
Q 015075          319 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  398 (413)
Q Consensus       319 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  398 (413)
                      ...+.....+....+..|.+|++ |+++.++.+...++|+.++|.+.+.+.+..+....+.+..++.+++.+..++ .||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR-IKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-hcC
Confidence            21221122233445678999865 9999999999999999999999998888666555555555666665555554 355


Q ss_pred             c
Q 015075          399 T  399 (413)
Q Consensus       399 t  399 (413)
                      |
T Consensus       393 ~  393 (393)
T PRK15011        393 V  393 (393)
T ss_pred             C
Confidence            4

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.91  E-value=2.4e-21  Score=185.18  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=114.4

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|++++|+++||+|||+++..+.++++++++++++++|++.++++|+++|++.+.. +....++.|++|+++|++.+++
T Consensus        65 ~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (413)
T PRK15403         65 MALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAI  144 (413)
T ss_pred             HHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999988754 4456778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~  131 (413)
                      ......+|..+++++++.+.+..|||+.|++.++..++..+ ..+.+||+++
T Consensus       145 ~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        145 ITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999888888999999998887766544 3556788753

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=2.2e-21  Score=183.82  Aligned_cols=307  Identities=17%  Similarity=0.142  Sum_probs=184.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++.+++..+.++++|++.+++.|+++|++.|.. +...+.+.+..|+++|++.++.
T Consensus        55 ~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (381)
T PRK03633         55 LVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAA  134 (381)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999998865 5556677788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHH-HHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSF-ALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~-~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      +..+..+|..+++.++..+.+...|+.. +....... +........+|+++                            
T Consensus       135 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------  185 (381)
T PRK03633        135 YMMVYYLGTVLGQLLVSKVSTELMSVLP-WVTGLVLAAILPLLFTRILNQQA----------------------------  185 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHHHHHHhcccCCCC----------------------------
Confidence            9999999999999998887665333332 22222111 11111111111100                            


Q ss_pred             Cccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          160 GILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                           + +    ++.                       .+.+..+ +++.+. ..............++.  +.+..+. 
T Consensus       186 -----~-~----~~~-----------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~lp~~~~-  228 (381)
T PRK03633        186 -----E-N----HDS-----------------------TSIWPMLKLRQARL-GVNGCIISGIVLGSLYG--LMPLYLN-  228 (381)
T ss_pred             -----C-C----CCC-----------------------CCHHHHHHhcchHH-HHHHHHHHHHHHHHHHH--HHHHHHH-
Confidence                 0 0    000                       0000011 111111 11101111101111111  1111111 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFG  318 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (413)
                      .        .+.+..   ..........+..+++.+..|++.||+|||+.+..+.....+....+. .....  ......
T Consensus       229 ~--------~g~s~~---~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~--~~~~~l  294 (381)
T PRK03633        229 H--------QGMSDA---SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQAAM--APALFI  294 (381)
T ss_pred             H--------cCCCHH---HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhHHH--HHHHHH
Confidence            0        011111   111223344456678889999999999999877665554443332222 11111  111112


Q ss_pred             HHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 015075          319 VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  388 (413)
Q Consensus       319 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  388 (413)
                      .........+.......|..|++.++...+..+...++|+.++|.+.+.+.+..+....+.+.+.+.++.
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            2222223456666777899998888888888888888999999999999988877666666655555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.90  E-value=3.3e-22  Score=188.42  Aligned_cols=130  Identities=16%  Similarity=0.326  Sum_probs=104.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.+++.++.+++++++ +++.+++.|+++|++.+..+...+++.|++|+++|++..++
T Consensus        51 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~  130 (366)
T TIGR00886        51 AVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGL  130 (366)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHH
Confidence            36788999999999999999999999999999999999 99999999999999865555567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc----------CCChHHHH-HHhhHHHH-HHHHHhhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVVMT----------RLNWRWLL-AFSSVPSF-ALLLFYGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~----------~~~Wr~~f-~~~~i~~~-~~~~~~~~~pEsp~  131 (413)
                      .....++|..+++.++..+..          ..+||+.| +..++... ...+.....+|+|+
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            988888888777777665543          34899998 44344433 33445556677764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.90  E-value=2.1e-21  Score=184.79  Aligned_cols=124  Identities=18%  Similarity=0.170  Sum_probs=108.0

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHH
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      .+++.|+++||+|||+++..+.++..++.++.+++++++.+++.|+++|++.+.. +...+++.|++|+++|++..++..
T Consensus        62 ~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  141 (400)
T PRK11646         62 LGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLM  141 (400)
T ss_pred             HHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999987754 666788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCC
Q 015075           83 AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPE  128 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pE  128 (413)
                      ....+|..++|++++.+. .+|||+.|++.++..++.. +..+..||
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999999999999888 6899999998877665443 33344554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=1.5e-21  Score=210.29  Aligned_cols=336  Identities=14%  Similarity=0.060  Sum_probs=195.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHH---HhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLL---SSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~---~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      +++++++|+++||+|||++++.+.++..++.++   +..+++++.++++|+++|++.|.. +...+++.|++|+++|+++
T Consensus        61 ~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  140 (1146)
T PRK08633         61 LLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRA  140 (1146)
T ss_pred             HHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhh
Confidence            367888999999999999999888766555544   445678999999999999998875 6778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---------CChHHHHHHhhHHH-HHHHHHhhcCCCCchHHhhccChHHHHHHHH
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTR---------LNWRWLLAFSSVPS-FALLLFYGLAPESPRYLCAKARTVDAHRILE  147 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~---------~~Wr~~f~~~~i~~-~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~  147 (413)
                      +++.+.+..+|.++++++++.+.+.         .+|++.+.+..+.. ++.++..+.+||+|+....+++.        
T Consensus       141 ~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  212 (1146)
T PRK08633        141 NGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK--------  212 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc--------
Confidence            9999999999999999999988765         24555544443333 33444556678877531100000        


Q ss_pred             HHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHH-HHHHHHHHH-HH
Q 015075          148 KMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLL-LWVLFFANV-FS  225 (413)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~  225 (413)
                                           +  ....                 .+.....++.+++.+..+...+ ..+.++... ..
T Consensus       213 ---------------------~--~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  252 (1146)
T PRK08633        213 ---------------------K--KYLF-----------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQ  252 (1146)
T ss_pred             ---------------------c--cccc-----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence                                 0  0000                 0000011222333222222111 111111111 11


Q ss_pred             hhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh
Q 015075          226 YYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  305 (413)
Q Consensus       226 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  305 (413)
                      .+...++..            .++.+..  ...........++.+++.++.+++.||.++|..+.++.+...+.++.+..
T Consensus       253 ~~~~~~~~~------------~~g~s~~--~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~  318 (1146)
T PRK08633        253 ANFPAYAKE------------VLGLDNT--FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT  318 (1146)
T ss_pred             HhhHHHHHH------------HhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH
Confidence            111111111            1111111  01122234445566788899999999999887776665555444443333


Q ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc-cchhHHHHHHHHH
Q 015075          306 HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVV  384 (413)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~  384 (413)
                      ..+.+...+..+...++.....+...++..+..|++.|+++.|+.+.+..+++++++.+.+.+... .+....+++.+.+
T Consensus       319 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        319 APSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            333333233333333333334455677888999999999999999999999888777665544321 1222233333333


Q ss_pred             HHHHHHHhhcccccc
Q 015075          385 FVLAIASSLLFPFET  399 (413)
Q Consensus       385 ~~~~~~~~~~~~~et  399 (413)
                      .++..+......||+
T Consensus       399 ~~~~~~~~~~~~~~~  413 (1146)
T PRK08633        399 TLIGTLYTLLLLPDS  413 (1146)
T ss_pred             HHHHHHHHHHHhHHH
Confidence            333333433334444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6.5e-22  Score=178.93  Aligned_cols=318  Identities=18%  Similarity=0.219  Sum_probs=206.5

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHH---HHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHH
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYV---SLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~---~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      ++.|++.||||.|++...+.++..+-.+..+++..++   .+++++++.|++-|...+..+++++|+||+++|.++|++.
T Consensus        67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223          67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc
Confidence            5679999999999999999999999999998887655   9999999999987767888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCC---hHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           83 AFWTAGTIFEASLAWVVMTRLN---WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~~---Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                       ..++|..+...++..+....+   ||....+-.++.++. ...++.+.|.|+...++++..                  
T Consensus       147 -~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~------------------  207 (417)
T COG2223         147 -AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL------------------  207 (417)
T ss_pred             -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc------------------
Confidence             888998888888877777777   999888777776664 455566766665311000000                  


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                              +                              ..++..++.+.   +..+.+.++.+.-.+.++....+.+. 
T Consensus       208 --------~------------------------------~~~~~v~~~~~---~W~lsllY~~tFG~Fvgfs~~l~~~~-  245 (417)
T COG2223         208 --------P------------------------------AQLKAVFSNKD---TWLLSLLYFATFGGFVGFSAYLPMYL-  245 (417)
T ss_pred             --------h------------------------------hHHHHHhcCcc---hHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                    0                              00111111111   11122222222222222222111111 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc-------chhHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-------QSAVV  311 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~  311 (413)
                            .+.++.+..+.+   .......+.+...-.++|+++||+|.++.....+....+........       .+...
T Consensus       246 ------~~~fg~~~~~Ag---~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~  316 (417)
T COG2223         246 ------VTQFGLSPVTAG---LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVV  316 (417)
T ss_pred             ------HHhcCCChhhHH---HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHH
Confidence                  112222222222   12233344444556789999999988777666555544443333322       12222


Q ss_pred             HHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH
Q 015075          312 TTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIA  390 (413)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  390 (413)
                      ....++....+.....+..+.+++.++|. .-+...|+...+|.+|++.-|...+...+.++ ....++++..+.+++.+
T Consensus       317 ~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v  395 (417)
T COG2223         317 FVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV  395 (417)
T ss_pred             HHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            22333333344444556788999999987 47788999999999999999999998888877 45677888888877766


Q ss_pred             Hhhc
Q 015075          391 SSLL  394 (413)
Q Consensus       391 ~~~~  394 (413)
                      +...
T Consensus       396 ~~~~  399 (417)
T COG2223         396 LTWA  399 (417)
T ss_pred             HHHH
Confidence            5543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.4e-22  Score=190.72  Aligned_cols=130  Identities=23%  Similarity=0.432  Sum_probs=118.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+|.+++|++.||++-.+.+..+.+.|++.++++....|++.+++.|++.|+.+++ .|....+++.|+.++|||..+++
T Consensus        95 ii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~  174 (495)
T KOG2533|consen   95 IIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGI  174 (495)
T ss_pred             HHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHH
Confidence            36889999999999999999999999999999999999999999999999999986 48888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH------hcCCChHHHHHHhhHHHHHH-HHHhhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVV------MTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l------~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~  131 (413)
                      +..+.++|.++|+++++.+      ....||||.|++.++..++. ++.++++|+.|.
T Consensus       175 ~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  175 WYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999886      23579999999999988776 566788999997

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.89  E-value=2.5e-20  Score=177.84  Aligned_cols=322  Identities=17%  Similarity=0.148  Sum_probs=187.5

Q ss_pred             cccchhhHhhhhc-----CChH-HHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            3 LGAYSWGIISDNY-----GRRK-SFLGIAMVTSVAGLLSSFSP---NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         3 ~G~~~~g~l~Dr~-----Grr~-~~~~~~~l~~~~~~~~~~a~---~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      +.+++||+++||+     |||| .+..+.++.+++..+.++.+   +++.+++..++.++..+.. +...+++.|+.|++
T Consensus        47 ~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~  126 (402)
T PRK11902         47 IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE  126 (402)
T ss_pred             HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            4578999999999     8876 67887888888888777773   4677788877777665554 66778999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~-~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      +|++..++...++.+|.++++.++..+.+. +|||..|++.++..++..+..++.||+++..   ++.++.         
T Consensus       127 ~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~---------  194 (402)
T PRK11902        127 ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL---------  194 (402)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh---------
Confidence            999999999999999999999988888775 5999999998877666555556677765310   000000         


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHH-HHHHHHh-hhH
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLF-FANVFSY-YGA  229 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~  229 (413)
                                        .++.                       .+.++.++++|..+......... ......+ +..
T Consensus       195 ------------------~~~~-----------------------~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~  233 (402)
T PRK11902        195 ------------------GEAV-----------------------VGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLST  233 (402)
T ss_pred             ------------------HHHH-----------------------HHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHH
Confidence                              0000                       00112222222222222221111 1111111 111


Q ss_pred             HhhhhhccCCCCccCccccccCCCCChhHHHHH-HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---Hh
Q 015075          230 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDV-FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VF  305 (413)
Q Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~  305 (413)
                      .++..            ..+.+.   ....... .......++|.++++++.||+|||+....+.....+..+.+   ..
T Consensus       234 ~~l~~------------~~G~~~---~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~  298 (402)
T PRK11902        234 TFLIR------------GAGFSA---GEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV  298 (402)
T ss_pred             HHHHH------------hcCCCH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111            011111   1111111 12233467889999999999999887665554433322221   22


Q ss_pred             c-chhHHHHHHHHH----HHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHH
Q 015075          306 H-QSAVVTTVLLFG----VRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL  380 (413)
Q Consensus       306 ~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~  380 (413)
                      . ++.+........    ..+...........++.+.+|.+.+    ++.+.+..+++..++.+.+.+.+..+....+..
T Consensus       299 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~  374 (402)
T PRK11902        299 TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLM  374 (402)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            2 222222222211    1122223345566777888876654    444444555565455577888888887766666


Q ss_pred             HHHHHHHHHHHhhccc
Q 015075          381 FEVVFVLAIASSLLFP  396 (413)
Q Consensus       381 ~~~~~~~~~~~~~~~~  396 (413)
                      .+++++++.++....+
T Consensus       375 ~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        375 TVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            6666666655554443

>PRK10054 putative transporter; Provisional

Probab=99.89  E-value=7.1e-21  Score=180.90  Aligned_cols=313  Identities=13%  Similarity=0.122  Sum_probs=188.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +++++.|+++||+|||+++..+.++..++.++.+++++++.++++|++.|.+.+.. +...++..|..|+++|++..++.
T Consensus        58 ~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  137 (395)
T PRK10054         58 VFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLN  137 (395)
T ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999988766654 56678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPG  160 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~  160 (413)
                      ....++|..++|++++.+.+ .+||..|++.++..++.. ...+++||+++-    ++.+                    
T Consensus       138 ~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~--------------------  192 (395)
T PRK10054        138 YTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATE--------------------  192 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccc--------------------
Confidence            99999999999999998764 799999998877665543 334445554320    0000                    


Q ss_pred             ccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHH-HHHhhhHHhhhhhccC
Q 015075          161 ILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFAN-VFSYYGAVLLTSKLSS  238 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~  238 (413)
                          + +    +..                        +.+..+ +++.+.......+..+.. ....+...+... .. 
T Consensus       193 ----~-~----~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-  237 (395)
T PRK10054        193 ----T-G----SVW------------------------SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMV-VA-  237 (395)
T ss_pred             ----h-h----hhh------------------------hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hc-
Confidence                0 0    000                        000011 111111111111111110 000011111110 00 


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTTVLLF  317 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  317 (413)
                                +.. ..................+.....+.+.||.++|+.+..++....+....+... ++.+.......
T Consensus       238 ----------~~~-~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (395)
T PRK10054        238 ----------DSD-FAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAA  306 (395)
T ss_pred             ----------ccc-hHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence                      000 001111111222223334455677899999999988776665444433333322 22222222222


Q ss_pred             HHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 015075          318 GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  387 (413)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  387 (413)
                      ....+.....+.......+..|++.|++..+..+ .+++|..++|.+.+.+.|..+....+....++..+
T Consensus       307 ~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        307 VFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             HHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            2222222233455567888999999999988654 67799999999999999987665545444444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.89  E-value=4.1e-20  Score=177.70  Aligned_cols=309  Identities=11%  Similarity=0.069  Sum_probs=182.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      .+++++.|++.||+|||+++..+.++++++.+++   +++++++.++++|+++|+|.|.. +...+++.|+.|+++|++.
T Consensus        75 ~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~  154 (438)
T PRK10133         75 FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR  154 (438)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHH
Confidence            3678899999999999999999999999999875   57899999999999999999875 5667788898777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cC-------------------------CChHHHHHHhh-HHHHHHHH-HhhcCCCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVM-TR-------------------------LNWRWLLAFSS-VPSFALLL-FYGLAPES  129 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~-~~-------------------------~~Wr~~f~~~~-i~~~~~~~-~~~~~pEs  129 (413)
                      +++.+..+.+|..+++.++..+. ..                         .+||++|+... +..++..+ .....||.
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~  234 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL  234 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            89999999999999998876543 00                         25666665433 33323222 23334542


Q ss_pred             chHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chh
Q 015075          130 PRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKL  208 (413)
Q Consensus       130 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  208 (413)
                      |.    +++.                             + ++..+                    ..+..+.+++ ++.
T Consensus       235 ~~----~~~~-----------------------------~-~~~~~--------------------~~~~~~~ll~~~~~  260 (438)
T PRK10133        235 QS----DNHS-----------------------------D-AKQGS--------------------FSASLSRLARIRHW  260 (438)
T ss_pred             Cc----cccc-----------------------------c-ccccc--------------------hhhhHHHHHhCchH
Confidence            21    0000                             0 00000                    0001111221 222


Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHH
Q 015075          209 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  288 (413)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~  288 (413)
                      .... +....+.......+.  +...++..       +.++.+....   ........++..+|.++++++.||+|||++
T Consensus       261 ~~~~-l~~~~~~~~~~~~~~--~~~~~l~~-------~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~  327 (438)
T PRK10133        261 RWAV-LAQFCYVGAQTACWS--YLIRYAVE-------EIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_pred             HHHH-HHHHHHHHHHHHHHH--HHHHHHhh-------hcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            2211 111111111111111  11111110       0112222111   222344555677899999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          289 MVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      +..+.+.....+.......+. .....+....++....++..+....|.+|++ .+++.++.. +..+++.+.|.+.+.+
T Consensus       328 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l  404 (438)
T PRK10133        328 LAAYALIAMALCLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFV  404 (438)
T ss_pred             HHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHH
Confidence            776655544333322222222 2223333445556667778888888888764 567777775 3556788888888878


Q ss_pred             hhccc-hhHHHHH
Q 015075          369 VTSCH-LRLAVIL  380 (413)
Q Consensus       369 ~~~~~-~~~~~~~  380 (413)
                      .+..+ ....+++
T Consensus       405 ~~~~g~~~~~~~v  417 (438)
T PRK10133        405 SDAAGNIPTAELI  417 (438)
T ss_pred             HHhccchHHHHHH
Confidence            77665 3444443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=4.6e-20  Score=175.68  Aligned_cols=130  Identities=16%  Similarity=0.162  Sum_probs=112.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++..++.++..++++++.+++.|+++|++.+.. +....+..|..++++|++..+.
T Consensus        57 ~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (394)
T PRK11652         57 GLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSL  136 (394)
T ss_pred             HHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999988764 4555778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~  131 (413)
                      .+.+..+|..++|.+++.+.+..|||+.|++.++..++. ....++.||+++
T Consensus       137 ~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        137 LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999999999999999888889999999887766544 344556788653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.88  E-value=9.3e-21  Score=177.91  Aligned_cols=287  Identities=17%  Similarity=0.170  Sum_probs=172.0

Q ss_pred             cchhhHhhhhc-----CChHHH-HHHHHHHHHHHHHHhhcc---cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCc
Q 015075            5 AYSWGIISDNY-----GRRKSF-LGIAMVTSVAGLLSSFSP---NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHR   74 (413)
Q Consensus         5 ~~~~g~l~Dr~-----Grr~~~-~~~~~l~~~~~~~~~~a~---~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~R   74 (413)
                      ++++|++.||+     ||||.+ ..+.++.+++....++.+   +.+.+.+..++.|++.+.. +...+++.|++|+++|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            78999999998     999974 667777778877777874   5556677777777766554 5667889999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHhhHHHHHHHHHhh-cCCCCchHHhhccChHHHHHH
Q 015075           75 GRWMVALSAFWTAGTIFEASLAWVVMTRLN--------WRWLLAFSSVPSFALLLFYG-LAPESPRYLCAKARTVDAHRI  145 (413)
Q Consensus        75 g~~~~~~~~~~~~G~~~~~~l~~~l~~~~~--------Wr~~f~~~~i~~~~~~~~~~-~~pEsp~~l~~~~~~~~a~~~  145 (413)
                      +++.++...+..+|.++++.++..+.+..+        ||..|++.++..++..+..+ ..||+++.   +.+. +    
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~-~----  189 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVP-K----  189 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccc-h----
Confidence            999999999999999999999988877777        99999998887766555444 35664320   0000 0    


Q ss_pred             HHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHH
Q 015075          146 LEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFS  225 (413)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (413)
                                            .+..+.                       .+.++.+++++..+.........+.....
T Consensus       190 ----------------------~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (356)
T TIGR00901       190 ----------------------PLTQAV-----------------------LKPIREFFQRKNMIQALLLLLLIVLYKLG  224 (356)
T ss_pred             ----------------------hHHHHH-----------------------HHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence                                  000000                       00111122222111111122222222222


Q ss_pred             hhhHH-hhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Q 015075          226 YYGAV-LLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV  304 (413)
Q Consensus       226 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  304 (413)
                      ++... +....+.        + .+.+....+  ........+..+++.++++++.||+|||+.+..+++...+....+.
T Consensus       225 ~~~~~~~~~~~l~--------~-~g~~~~~~g--~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       225 DSAATVLTTLFLL--------D-MGFSKEEIA--LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHHHHHHHH--------H-cCCCHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            22221 1111111        0 111111111  1112222345677899999999999998887766665544333222


Q ss_pred             h---c--------chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhh
Q 015075          305 F---H--------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGK  355 (413)
Q Consensus       305 ~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  355 (413)
                      .   .        .+.+......+...++.....+...++..|..|++.|++..|+.+++.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       294 WLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            1   1        1112222222233344444566788899999999999999999988764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.88  E-value=7.2e-21  Score=204.42  Aligned_cols=304  Identities=13%  Similarity=0.022  Sum_probs=182.1

Q ss_pred             ccccchhhHhhhhcCChHHHHH---HHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLG---IAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~---~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++.+++.|+++||+|||+++..   ..+++.+..+.....+|++.++++|+++|++.+.. |...+++.|++|+++|+++
T Consensus        66 ~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a  145 (1140)
T PRK06814         66 FIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGA  145 (1140)
T ss_pred             HHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchh
Confidence            3567888999999999997533   22333333334444589999999999999998865 7888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKL  157 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~  157 (413)
                      +++.+.+.++|.++|+++++.+....+|++.|+...+..++.++..+++||+++-  .++...                 
T Consensus       146 ~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------------  206 (1140)
T PRK06814        146 NALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKI-----------------  206 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCee-----------------
Confidence            9999999999999999999999999999999965555555555566667765420  000000                 


Q ss_pred             CCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHH-HHHHHHHHHHhhhH-Hhhhhh
Q 015075          158 PPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLL-WVLFFANVFSYYGA-VLLTSK  235 (413)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~  235 (413)
                             +.... ++                       ....++...+.+..+...+. ...++..    ... .+++.+
T Consensus       207 -------~~~~~-~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~  251 (1140)
T PRK06814        207 -------DRNII-RS-----------------------TITLLKYAKADKRIWLAILGISWFWLVG----AVVLSQLPLL  251 (1140)
T ss_pred             -------ccchH-HH-----------------------HHHHHHHHhcCchHHHHHHHHHHHHHHH----HHHHHHhHHH
Confidence                   00000 00                       00112222222222222111 1111111    111 111111


Q ss_pred             ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc---------
Q 015075          236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---------  306 (413)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---------  306 (413)
                      +.        +.++...   ..........+++.++|.++.|+++||.++++.+..+.++..+..+.+...         
T Consensus       252 ~~--------~~~g~~~---~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  320 (1140)
T PRK06814        252 AK--------ETLGGDE---NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA  320 (1140)
T ss_pred             HH--------HHcCCch---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence            11        0111111   111222345556778889999999987766554433333222222111111         


Q ss_pred             -----------chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          307 -----------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       307 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                                 .+.+...+..+..+++.........++..+..|++.||.+.|+.+.+..++..+++.+.+.+.+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       2222222222233333333444567888999999999999999999999999999988887764

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.88  E-value=7.5e-20  Score=174.31  Aligned_cols=297  Identities=13%  Similarity=0.079  Sum_probs=187.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF---SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~---a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++++++.|++.||+|||+++..+.++++++.++...   .++++.+++.|++.|+|.|.. +...+++.|+.|+++|++.
T Consensus        52 ~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~  131 (410)
T TIGR00885        52 FIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRR  131 (410)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHH
Confidence            467888999999999999999999999999888543   468999999999999999875 6677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC--------------------------CChHHHHHHhhHHHHHHHHHhhc--CCCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTR--------------------------LNWRWLLAFSSVPSFALLLFYGL--APES  129 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~--------------------------~~Wr~~f~~~~i~~~~~~~~~~~--~pEs  129 (413)
                      .++.+...++|..+++.++..+...                          .+||++|++.+++.++..+...+  .||.
T Consensus       132 ~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       132 LNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999988876422                          36999998877766554333322  3432


Q ss_pred             chHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chh
Q 015075          130 PRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKL  208 (413)
Q Consensus       130 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  208 (413)
                      ++     ++                          +   ++++..                       +..+...+ ++.
T Consensus       212 ~~-----~~--------------------------~---~~~~~~-----------------------~~~~~~~~~~~~  234 (410)
T TIGR00885       212 NH-----SD--------------------------A---KQISFS-----------------------ASLSRLARIRHY  234 (410)
T ss_pred             Cc-----cc--------------------------c---ccccch-----------------------hhHHHHHhChhH
Confidence            11     00                          0   000000                       00001111 122


Q ss_pred             hhHHHHHHHHHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHH
Q 015075          209 IRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLS  288 (413)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~  288 (413)
                      .. ..+..+.+.....+.+  .++..+.....       .+. .......+..  .......+|.++++++.||+++|+.
T Consensus       235 ~~-~~l~~f~yvg~e~~~~--s~l~~y~~~~~-------~~~-~~~~a~~~~~--~~~~~~~vGR~~~~~l~~r~~~~~~  301 (410)
T TIGR00885       235 RE-GVIAQFFYVGVQIMCW--TFIIQYAVRLI-------PGM-TAGFAANYNI--GAMVIFFISRFIGTWLISYLAAHKV  301 (410)
T ss_pred             HH-HHHHHHHHHHHHHHHH--HHHHHHHhhcc-------CCC-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            11 1111111222211111  11222111000       000 0011111111  1123456789999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          289 MVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      +..+.+.+.+..+.....++.. ....+....++....++..+....+..+++.+..+.+++.++  +|+.+.|.+.+.+
T Consensus       302 l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~  378 (410)
T TIGR00885       302 LMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHH
Confidence            7776666655554444433322 233444445666667788888999999988876677776665  9999999999999


Q ss_pred             hhc
Q 015075          369 VTS  371 (413)
Q Consensus       369 ~~~  371 (413)
                      .|.
T Consensus       379 ~d~  381 (410)
T TIGR00885       379 IDM  381 (410)
T ss_pred             HHH
Confidence            884

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.88  E-value=3.2e-20  Score=178.22  Aligned_cols=345  Identities=17%  Similarity=0.127  Sum_probs=181.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hhccc-----HHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSPN-----YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~a~~-----~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .++++++|+++||+|||+++.++..+..++....   ..++.     .....+.+++.|.+.... +....+. |.. .+
T Consensus        60 ~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~  137 (420)
T PRK09528         60 LLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SR  137 (420)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-Hh
Confidence            3578899999999999999988766655443321   11111     111223344444333222 2222222 323 34


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcC-CCCchHHhhccChHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLA-PESPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~-pEsp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      +||+..+......++|..+++++++.+.+ .+||+.|+..++..++.....++. ||.|+-   +++. +          
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~----------  202 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST---AKVA-N----------  202 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch---hhhc-c----------
Confidence            56777888888889999999999887765 599999998887776655444443 332220   0000 0          


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHH-HHHHHhhhH
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFF-ANVFSYYGA  229 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~  229 (413)
                         +           + +.++++                    ...+..+..+ +++.+...+....... .........
T Consensus       203 ---~-----------~-~~~~~~--------------------~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~  247 (420)
T PRK09528        203 ---A-----------L-GANASA--------------------VSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFP  247 (420)
T ss_pred             ---c-----------h-hccccc--------------------ccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHH
Confidence               0           0 000000                    0000011111 1221111111111100 011111111


Q ss_pred             HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchh
Q 015075          230 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA  309 (413)
Q Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  309 (413)
                      .+..+....            ...+.........+..+...++.++.|++.||+|||+.+..+.+...+....+.+.++.
T Consensus       248 ~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~  315 (420)
T PRK09528        248 NFFASFFAT------------PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGP  315 (420)
T ss_pred             HHHHHHHhc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccH
Confidence            111111100            00000111112233445566788999999999999998777666555444444444443


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHH-HHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 015075          310 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  388 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  388 (413)
                      +......................+.+|.+|++.|++..+. .+..+.+|++++|.+.+.+.|..+...++...+++.++.
T Consensus       316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~  395 (420)
T PRK09528        316 LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLF  395 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            3322222222222222233445678899999999988766 566778999999999999998877777777777776666


Q ss_pred             HHHhhccc-ccccCcchhhhhhh
Q 015075          389 IASSLLFP-FETMGRELKDTVDA  410 (413)
Q Consensus       389 ~~~~~~~~-~et~~~~l~~~~~~  410 (413)
                      .++.++.. ++.+...++++.+|
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~  418 (420)
T PRK09528        396 TLISVFTLSGDRELSLLRRQVPE  418 (420)
T ss_pred             HHHHHHHhcCCchhhHHHhhCcc
Confidence            55555444 33333445454444

>TIGR00889 2A0110 nucleoside transporter

Probab=99.88  E-value=1.2e-19  Score=173.54  Aligned_cols=330  Identities=12%  Similarity=0.073  Sum_probs=187.7

Q ss_pred             ccccchhhHhhhhcCC-hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHH----HHHH----hhccC
Q 015075            2 LLGAYSWGIISDNYGR-RKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFL----AYFL----EFVPV   71 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Gr-r~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~----~~~~----E~~p~   71 (413)
                      +++++++|+++||+|| |+++.++.++++++..+..++++++.+.+.|++.|++.+.. +...    .+..    |....
T Consensus        52 ~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~  131 (418)
T TIGR00889        52 ILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTD  131 (418)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhc
Confidence            4688999999999965 77888888888888888899999999999999999976543 3322    2222    33333


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHH
Q 015075           72 SHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        72 ~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      ..|.+..+      .+|..+++.+++.+....+|+. |++.++..++..+..+++||+|+-   +++.++          
T Consensus       132 ~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~----------  191 (418)
T TIGR00889       132 FPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKM----------  191 (418)
T ss_pred             CCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---cccccc----------
Confidence            34555444      3577777777776643345664 445555454444455678887630   000000          


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhh-hccchhhhHHHHHHHHHHHHHHHhhhHH
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFM-LFSRKLIRTTLLLWVLFFANVFSYYGAV  230 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (413)
                                     +..  +..                     .. ..+. ..+++.........+....... ++  .
T Consensus       192 ---------------~~~--~~~---------------------~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~--~  229 (418)
T TIGR00889       192 ---------------SIK--VML---------------------GL-DAFILFKNKRMAIFFFFSMLLGAPLQI-TN--I  229 (418)
T ss_pred             ---------------CHH--HHh---------------------hh-hHHHHhcCCCeeeHHHHHHHHHhHHHH-HH--H
Confidence                           000  000                     00 0000 1112221111111111111111 11  1


Q ss_pred             hhhhhccCCCCccCccccccCCC-----CChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh
Q 015075          231 LLTSKLSSGDNKCGSKVLHADKS-----KDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF  305 (413)
Q Consensus       231 ~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~  305 (413)
                      +....+..         .+.+..     ..........+..+..+++.+..++++||+|||+.+..+.+...+....+..
T Consensus       230 ~~~~~~~~---------~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~  300 (418)
T TIGR00889       230 FGNGFLHE---------FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY  300 (418)
T ss_pred             hHHHHHHH---------hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            11111110         000000     0011122334555567788899999999999999988877766554433333


Q ss_pred             cc-hh---HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHH-hhhhhhHhHHHHHHHHHhhccc------h
Q 015075          306 HQ-SA---VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVAS-SLGKVGGMVCPLVAVGLVTSCH------L  374 (413)
Q Consensus       306 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~p~~~~~l~~~~~------~  374 (413)
                      .. +.   .......+....+.....+....+..|.+|++.|+++.|+.+ ....+|++++|.+.+.+.+..+      +
T Consensus       301 ~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~  380 (418)
T TIGR00889       301 GDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW  380 (418)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence            21 11   111112222222222333455677899999999999999997 5567899999999999888753      3


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          375 RLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      ...+.+.+++.+++.+..+++.||+++.
T Consensus       381 ~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       381 QTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            4556666677677777777777888664

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=6.5e-23  Score=186.81  Aligned_cols=129  Identities=21%  Similarity=0.346  Sum_probs=114.9

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++.++++|+++||+.||.++..+..+|.++.+.++++..|+++.++|.+.|+|++.+ |.+.+++++.+|.++|+++.++
T Consensus        82 ~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i  161 (493)
T KOG1330|consen   82 MIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI  161 (493)
T ss_pred             HHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence            356889999999999999999999999999999999999999999999999999986 7888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHhhHHHHHHHH-HhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFALLL-FYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~-Wr~~f~~~~i~~~~~~~-~~~~~pEsp  130 (413)
                      ++.+.++|..+|-+++..+....+ |||.|+..++.+++..+ .+++.+|-+
T Consensus       162 fy~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  162 FYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            999999999999888887766544 99999999999987644 445555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.87  E-value=2.5e-19  Score=169.72  Aligned_cols=312  Identities=13%  Similarity=0.015  Sum_probs=185.9

Q ss_pred             cccchhhHhhhhcCChHHH----HHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNYGRRKSF----LGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~----~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++++++|+++||+|||+..    ..+..++.+  .....+++++.+++.|+++|.+.+. .|...++..|+  .++|++.
T Consensus        54 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~  129 (382)
T TIGR00902        54 AGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLD  129 (382)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCC
Confidence            5678999999999985543    222222222  2445788999999999999987665 46666666664  5788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKL  157 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~  157 (413)
                      .+......++|.++++++++.+.+.+|||..|++..+..++... .+.++|+++    +++.+                 
T Consensus       130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~----~~~~~-----------------  187 (382)
T TIGR00902       130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP----PKDAI-----------------  187 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC----CCccc-----------------
Confidence            99999999999999999999999999999999876554333222 233344321    00000                 


Q ss_pred             CCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHHHHHHHhhhHHhhhhhc
Q 015075          158 PPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLLTSKL  236 (413)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (413)
                                 ++ ++.+                    ..+..+..++ ++.........+.. .....++.  +.+..+
T Consensus       188 -----------~~-~~~~--------------------~~~~~~~~l~~~~~~~~l~~~~l~~-~~~~~~~~--~~~~~l  232 (382)
T TIGR00902       188 -----------PE-DESQ--------------------GDSAFIALLKNPMNLRFLAAVCLIQ-GAHAAYYG--FSAIYW  232 (382)
T ss_pred             -----------cc-cccc--------------------cchhHHHHHcChHHHHHHHHHHHHH-HHHHHHHH--HHHHHH
Confidence                       00 0000                    0001112222 22222111111111 11111111  111111


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL  316 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (413)
                      .         ..+.+....+   ....+..+..+++..+.+++.||+|+|+.+..+.+...+....+.+.++.+......
T Consensus       233 ~---------~~g~s~~~~g---~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       233 Q---------AAGISASATG---LLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             H---------HCCCCHhHHH---HHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            1         0111111111   223346667778888899999999999988887777766655555444444333333


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhh-hhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL-GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  389 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  389 (413)
                      ....+......+....+..+. |++.|+++.++.+.. ..+|..++|.+.|.+.|..+. ..++..+++.+++.
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            333333334445566677787 999999999998754 468889999999999988764 44555555555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00896 CynX cyanate transporter

Probab=99.87  E-value=1.4e-19  Score=169.81  Aligned_cols=298  Identities=14%  Similarity=0.136  Sum_probs=175.6

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .+++++.|+++||+|||+++..+.++..++.++. .+++++.+++.|+++|++.|.. +....++.|++| ++|+++++.
T Consensus        49 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~  126 (355)
T TIGR00896        49 AVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGL  126 (355)
T ss_pred             HHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHH
Confidence            4678899999999999999999998888888877 7899999999999999998864 445567788886 689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRL--NWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~--~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      ++....+|..+++.++..+.+..  +||+.|.+.++..++..  ..++||+++.   + +                +   
T Consensus       127 ~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~~---~-~----------------~---  181 (355)
T TIGR00896       127 YSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRRR---V-A----------------A---  181 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhccc---c-C----------------C---
Confidence            99999999999998888776654  49998877665443322  2234443210   0 0                0   


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccC
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSS  238 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  238 (413)
                            +      +..    ++                 ...+..++.+....   ...........++....+.+.+..
T Consensus       182 ------~------~~~----~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lp~~~~  225 (355)
T TIGR00896       182 ------N------QTT----TR-----------------LTPVRIWRSPLAWQ---VTVFFGLQSGLYYSLIGWLPAILI  225 (355)
T ss_pred             ------C------CCC----CC-----------------CCCchhhcCHhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0      000    00                 00001111111111   111111122222222211111110


Q ss_pred             CCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 015075          239 GDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLF  317 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (413)
                              .++.+....   ........++.+++.++.|++.||+ +||.....+.....+....+....+..... ...
T Consensus       226 --------~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  293 (355)
T TIGR00896       226 --------SHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WAL  293 (355)
T ss_pred             --------HcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHH
Confidence                    011111111   1223445667788999999999999 455555554444433333222222111111 112


Q ss_pred             HHHHHhhhhhhhhheecc-cccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccch
Q 015075          318 GVRMCVTGTITVATIYAP-EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL  374 (413)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~  374 (413)
                      ...++.....+....... +..+++.++...++.+.++++++.++|.+.+.+.+..+.
T Consensus       294 l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       294 VLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222333333344344444 344467788999999999999999999999988887653

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=1.8e-19  Score=174.02  Aligned_cols=305  Identities=15%  Similarity=0.090  Sum_probs=179.3

Q ss_pred             ccccchhhHhhhh----cCChH-HHHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhc
Q 015075            2 LLGAYSWGIISDN----YGRRK-SFLGIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFV   69 (413)
Q Consensus         2 ~~G~~~~g~l~Dr----~Grr~-~~~~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~   69 (413)
                      .+.+++.|+++||    +|||| .++.+.++++++.+++...++      ...+++.+++.+++.+.. ....++..|..
T Consensus        49 ~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  128 (437)
T TIGR00792        49 AITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAIT  128 (437)
T ss_pred             HhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCccccc
Confidence            3678899999997    78855 566777888888888877764      456777888888876654 34456777877


Q ss_pred             -cCCCcchHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChHHHHHHhhHHHHHHHH-HhhcCCCCchHHhhccChH
Q 015075           70 -PVSHRGRWMVALSAFWTAGTIFEASLAWVVM-------TRLNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTV  140 (413)
Q Consensus        70 -p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~-------~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~~l~~~~~~~  140 (413)
                       ++++|++..++.+.+..+|.++++.+...+.       +..+||+.+++.+++.++..+ ..+..+|+++.     +. 
T Consensus       129 ~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~-  202 (437)
T TIGR00792       129 LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IP-  202 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CC-
Confidence             5689999999988888888877766655443       246899999888887766543 44556665420     00 


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH
Q 015075          141 DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF  220 (413)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (413)
                                              +   ++ +++.        +           ..+.++.+++.|..+....   ..+
T Consensus       203 ------------------------~---~~-~~~~--------~-----------~~~~~~~l~~~~~~~~~~~---~~~  232 (437)
T TIGR00792       203 ------------------------K---NI-EKKL--------S-----------LKQIFKALFKNDQLLILCL---AYL  232 (437)
T ss_pred             ------------------------c---cc-ccCC--------C-----------HHHHHHHHhCCHHHHHHHH---HHH
Confidence                                    0   00 0000        0           0011222222222211111   111


Q ss_pred             HHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Q 015075          221 ANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL  300 (413)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  300 (413)
                      .....++....+...+..       ...+  ..  ........+..+..+++.++.++++||+|||+.+..+.+...+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~-------~~~~--~~--~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~  301 (437)
T TIGR00792       233 FYNLAFNIKNGVQVYYFT-------YVLG--DP--ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGY  301 (437)
T ss_pred             HHHHHHHHHcchhheeEe-------eecC--Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            111222111111111110       0011  01  111112234456677888999999999999998877766554444


Q ss_pred             HHHHhc-chhHHHHHHHHHHHHHhhhhhhhhheecccccc-------cchhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc
Q 015075          301 LPLVFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP-------TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  372 (413)
Q Consensus       301 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~  372 (413)
                      +.+... ++............+......+..+.+.+|..|       ++.++...|+.+.+.++++.+++.+.+.+.+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       302 LIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            333332 222222222222333333345567777777765       567899999999999999999999998887654


Q ss_pred             c
Q 015075          373 H  373 (413)
Q Consensus       373 ~  373 (413)
                      +
T Consensus       382 G  382 (437)
T TIGR00792       382 G  382 (437)
T ss_pred             C
Confidence            3

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.85  E-value=5.3e-19  Score=168.41  Aligned_cols=328  Identities=17%  Similarity=0.152  Sum_probs=179.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hhcc-----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSP-----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~a~-----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~   72 (413)
                      .++++++|+++||+|||+.+..+.+.++++....   .+++     ....+++.|++.|++.+.. +....+..|..+  
T Consensus        52 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--  129 (396)
T TIGR00882        52 ILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--  129 (396)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--
Confidence            3678899999999999999988776665443321   2222     2334567788888887754 555556655433  


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc-CCCCchHHhhccChHHHHHHHHHHHH
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL-APESPRYLCAKARTVDAHRILEKMAF  151 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~-~pEsp~~l~~~~~~~~a~~~~~~~~~  151 (413)
                      +++...+......++|..+++.+++.+.+ .+||+.|++.++..++..+..+. .||+|+.    ++.+++         
T Consensus       130 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------  195 (396)
T TIGR00882       130 NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVANA---------  195 (396)
T ss_pred             hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhcc---------
Confidence            33445566667778899999988887654 69999999888777665443333 4444321    000000         


Q ss_pred             HcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHH-HHHHHhhhH
Q 015075          152 VNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFF-ANVFSYYGA  229 (413)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~  229 (413)
                         .+             .++++                    ...++.+.+++ ++.+........... .+.......
T Consensus       196 ---~~-------------~~~~~--------------------~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  239 (396)
T TIGR00882       196 ---LG-------------ANASA--------------------FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFA  239 (396)
T ss_pred             ---cc-------------cccCC--------------------CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00             00000                    00001111221 222111111111110 011111111


Q ss_pred             HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchh
Q 015075          230 VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA  309 (413)
Q Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~  309 (413)
                      .+....+.            ..............+..+...++....+++.||+|||+.+..+.....+........++.
T Consensus       240 ~y~~~~~~------------~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~  307 (396)
T TIGR00882       240 NFFTSFFA------------TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA  307 (396)
T ss_pred             HHHHHhcc------------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh
Confidence            11111110            000001111122334455566677888999999999998777665544433333333333


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHH-HHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 015075          310 VVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGV-ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLA  388 (413)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~  388 (413)
                      +...........+..........+..+..|++.++++.+. .+....+|++++|.+.+.+.+..+...++.+.+++.++.
T Consensus       308 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~  387 (396)
T TIGR00882       308 LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF  387 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3222222222222222223345567888899999988877 567789999999999999999877777777766666555


Q ss_pred             HHHhh
Q 015075          389 IASSL  393 (413)
Q Consensus       389 ~~~~~  393 (413)
                      .+...
T Consensus       388 ~~~~~  392 (396)
T TIGR00882       388 TLISV  392 (396)
T ss_pred             HHHHH
Confidence            54443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=3.6e-20  Score=164.52  Aligned_cols=129  Identities=20%  Similarity=0.249  Sum_probs=106.4

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      +.+..||-++||+|||+++.++++..++...+.+++.||..++..|++.|+.-|.....-++++|..++++|+..++..+
T Consensus        83 ~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~  162 (451)
T KOG2615|consen   83 ISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVG  162 (451)
T ss_pred             HhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeee
Confidence            56788999999999999999999999999999999999977777799999999888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc---CCC--hHH-HHHHhhHHHHH-HHHHhhcCCCCch
Q 015075           83 AFWTAGTIFEASLAWVVMT---RLN--WRW-LLAFSSVPSFA-LLLFYGLAPESPR  131 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~---~~~--Wr~-~f~~~~i~~~~-~~~~~~~~pEsp~  131 (413)
                      ..+++|.++||.+++++.+   ..|  |-. +.+...+.... .....+++|||-+
T Consensus       163 ~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  163 TAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             hhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            9999999999999999876   222  111 12233333333 4456688999943

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.85  E-value=2.4e-18  Score=163.07  Aligned_cols=310  Identities=12%  Similarity=0.027  Sum_probs=172.1

Q ss_pred             ccccchhhHhhhhcCChH----HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRK----SFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~----~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      +++++++|++.||+|||+    .+.+.....  .......+++++.+++.|++.|++.+.. +...++..++  .++|++
T Consensus        53 ~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~  128 (382)
T PRK11128         53 FLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGL  128 (382)
T ss_pred             HhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccC
Confidence            357888999999999943    232222221  2233445688999999999999987654 5555566665  456788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTK  156 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~  156 (413)
                      ..+......++|..++|++++.+.+++|||..|+..++..++..+...+.||.++    +++                  
T Consensus       129 a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~------------------  186 (382)
T PRK11128        129 DYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGE------------------  186 (382)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----ccc------------------
Confidence            8888888889999999999999999999999998877654444333334454321    000                  


Q ss_pred             CCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccch-hhhHHHHHHHHHHHHHHHhhhHHhhhhh
Q 015075          157 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRK-LIRTTLLLWVLFFANVFSYYGAVLLTSK  235 (413)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (413)
                              +   ++ +.+                    +...+++..+++| .+.......+..... ..++.  +....
T Consensus       187 --------~---~~-~~~--------------------~~~~~~~~i~~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~~  231 (382)
T PRK11128        187 --------S---RQ-QES--------------------AGWPAWKALLKEPTVWRFLLCVSLLQGSH-AAYYG--FSAIY  231 (382)
T ss_pred             --------c---cc-ccc--------------------cccchHHHHHcChhHHHHHHHHHHHHHHh-HhHHH--HHHHH
Confidence                    0   00 000                    0001122222222 221111111111111 11111  11111


Q ss_pred             ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015075          236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL  315 (413)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (413)
                      +.         ..+.+....+   ....+..+..++..++.+++.||+|+|+.+..+.+...+....+...++.+.....
T Consensus       232 ~~---------~~g~s~~~~g---~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (382)
T PRK11128        232 WQ---------AAGYSASTIG---YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVI  299 (382)
T ss_pred             HH---------HCCCCHhHHH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            11         0111111111   12224455667778889999999999998877766655544433333333322222


Q ss_pred             HHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhh-hhhHhHHHHHHHHHhhccchhHHHHHHHHHHH
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFV  386 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  386 (413)
                      .+...++.....+....+..+. |++.+++..++.+... .+|..++|.+.|.+.+..+. ..++..+++.+
T Consensus       300 ~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~  369 (382)
T PRK11128        300 QILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVAL  369 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence            2222222222334445556665 5555788888887554 45668999999999887764 33444444433

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=4.1e-18  Score=165.85  Aligned_cols=141  Identities=16%  Similarity=0.146  Sum_probs=109.3

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS------PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a------~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      ++++.|+++||+|||+++.++.++++++.++++++      ++++.+++.|+++|+|.+.. +.....+.+|+| ++||+
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            45578999999999999999999999999999997      68999999999999998764 556677889996 78999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH---HhhcCCCCchHHhhccChHHHHHHH
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL---FYGLAPESPRYLCAKARTVDAHRIL  146 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~---~~~~~pEsp~~l~~~~~~~~a~~~~  146 (413)
                      +.++...+..+|..+.+.+...+.. .+|++.|++.++.++++.+   .....||+|++..++++.+++++..
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~  227 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQ  227 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHH
Confidence            9999999999999865544444333 4788888877777655422   2334577777765665555555543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.82  E-value=6.4e-19  Score=163.99  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=110.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      +.+++.|+++||+|.|+++..+.+.|++.++++++++++..+.+.|++.|+++|+..+...++.+|+|+++|++++++..
T Consensus        77 l~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~  156 (511)
T TIGR00806        77 AVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSR  156 (511)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999986676789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhH---HHHHHHHHhhcCCCCch
Q 015075           83 AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSV---PSFALLLFYGLAPESPR  131 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i---~~~~~~~~~~~~pEsp~  131 (413)
                      .+..+|.+++++++.. ...+|||+.+-+.-+   -..+.+++-+++|.-++
T Consensus       157 sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       157 AAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            9999999999999988 557899997654422   22344666677884444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.82  E-value=7.6e-18  Score=163.59  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             cchhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHhhhcccch-hHHHHHHHhhccCCC--cchHHH
Q 015075            5 AYSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSPNYVS-LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMV   79 (413)
Q Consensus         5 ~~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~~~~~-l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~   79 (413)
                      .++.|+++|| +|||+++..+.+++.++.++++++++... ++++|+++|+|.|.. +...+++.|.+|+++  |++..+
T Consensus        67 ~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~  146 (489)
T PRK10207         67 ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFT  146 (489)
T ss_pred             HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchh
Confidence            4578999999 99999999999999999999999887554 558999999999875 777789999999884  577889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHH
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP  115 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~  115 (413)
                      ++..+.++|..+++.+++.+.++.|||+.|++.++.
T Consensus       147 ~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        147 LFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            999999999999999999999999999999986553

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.81  E-value=1.2e-17  Score=161.51  Aligned_cols=343  Identities=16%  Similarity=0.187  Sum_probs=188.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      +++++.|.++|.||||..++.+.++..+|.++++.++|...++++-.+.|+|.|........++|..|.+.|+...++..
T Consensus        93 v~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~  172 (599)
T PF06609_consen   93 VSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIAS  172 (599)
T ss_pred             HHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHH
Confidence            35678899999999999999999999999999999999999999999999997765544555899999999987766665


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH--HhhcCCCCchHHhhccChHHHHHHHHHHHHHc-------
Q 015075           83 AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL--FYGLAPESPRYLCAKARTVDAHRILEKMAFVN-------  153 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~--~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~-------  153 (413)
                      .........++.++..+..+.+|||.|++..+...+.++  ..+..|.+  +-..+++....++.++|++.+.       
T Consensus       173 ~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~G  250 (599)
T PF06609_consen  173 IPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAG  250 (599)
T ss_pred             HHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHH
Confidence            554444445666666666677999999988776544322  22333433  2222222222223344444432       


Q ss_pred             -----------CC-CCCCCccccchhhhhhhhccccccccccchhhhcchh---hccccchhhhhccchhhhHHHHHHHH
Q 015075          154 -----------QT-KLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDK---LKSGFSSFFMLFSRKLIRTTLLLWVL  218 (413)
Q Consensus       154 -----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (413)
                                 +. ..+.+........-.--  .       .-.-....|.   .|.++...+.+..+|.   .....+.
T Consensus       251 l~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~--~-------~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~---~~~~lvi  318 (599)
T PF06609_consen  251 LALFLLGLSWGGYPYYPWKSAHVIAPLVIGF--V-------LLVAFVVWEWFGAPKDPLFPHRLFKDRRG---FAALLVI  318 (599)
T ss_pred             HHHHHHHHhccCCCCCCCCCccchhhHHHHH--H-------HHHHHHHhhhhccCCCCcCCHHHhccchH---HHHHHHH
Confidence                       00 01110000000000000  0       0000000111   1122222222222221   2222223


Q ss_pred             HHHHHHHhhhH-HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChh-HHHHHHHHHH
Q 015075          219 FFANVFSYYGA-VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRK-LSMVLMFVSA  296 (413)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr-~~~~~~~~~~  296 (413)
                      .+...+.||.. .+++++...        .+..+..............+++...|.++.|.+..|++|- ..++.+.+..
T Consensus       319 ~fi~G~~~~s~~~l~p~~~~~--------vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~  390 (599)
T PF06609_consen  319 SFISGMNFFSVNILWPQQVVN--------VFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLM  390 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh--------hccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            33333344443 344433211        0111110000111122334555667888888999888763 4444454444


Q ss_pred             HHHHHHHHh--cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHH
Q 015075          297 CIFLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVG  367 (413)
Q Consensus       297 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~  367 (413)
                      ..++.++..  .++......+.+...++..+...+..+.+.-..|++.-+++.|+..++..+||.++.-+..-
T Consensus       391 ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  391 TAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            333333332  22322233444444455555555667777788999999999999999999988777655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.81  E-value=2.6e-17  Score=159.82  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=104.8

Q ss_pred             cccchhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC---cchH
Q 015075            3 LGAYSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH---RGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~---Rg~~   77 (413)
                      ++++++|+++|| +|||+++..+.++++++.++.++++++..+++.|++.|+|.|.. +...++++|++|+++   |++.
T Consensus        63 ~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~  142 (475)
T TIGR00924        63 LLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG  142 (475)
T ss_pred             HHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccce
Confidence            578889999999 89999999999999999999999999999999999999999875 777789999999865   8889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL  119 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~  119 (413)
                      .+++..+.++|..+++.+++.+.++.|||+.|.+.++..++.
T Consensus       143 ~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       143 FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            999999999999999999999988889999999877544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.3e-19  Score=160.36  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=113.0

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC-CcchHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS-HRGRWMVA   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~-~Rg~~~~~   80 (413)
                      +-..+.|++.||+|+|..++++++++..++++.++..+|+++++.|.+||+|.+.. ....+++++-+|.+ +||+++|+
T Consensus       121 lvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGi  200 (464)
T KOG3764|consen  121 LVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGI  200 (464)
T ss_pred             HhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHH
Confidence            44678899999999999999999999999999999999999999999999998875 56678999999987 58999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAP  127 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~p  127 (413)
                      ...+.++|.++||+.++.+.+..|.+..|++.++..++...+.+++-
T Consensus       201 algfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  201 ALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence            99999999999999999999999999999999998887766655543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.81  E-value=2.4e-17  Score=159.92  Aligned_cols=326  Identities=16%  Similarity=0.151  Sum_probs=206.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc-----ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS-----PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a-----~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      +-+++.|.++||+.||++++.+.++..+..++.++.     .+.+.+++.-++.|++.+.. |.-.+.+-|..|+++..+
T Consensus        60 Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~  139 (524)
T PF05977_consen   60 LLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPA  139 (524)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH
Confidence            456788999999999999999998876655444332     46888999999999998765 777889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTK  156 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~  156 (413)
                      ++++.+...++..++||.+++.+....|-.+.|.+.++--++........+..++    + +..+.++..          
T Consensus       140 A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~-~~~~~e~~~----------  204 (524)
T PF05977_consen  140 ANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----P-SSLPRERFF----------  204 (524)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----c-cccchhhhh----------
Confidence            9999999999999999999999988888888888877644443333333222110    0 000000000          


Q ss_pred             CCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhc
Q 015075          157 LPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL  236 (413)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (413)
                                                        +..+   +.++.....+..+..+.....+......++.  ++ +.+
T Consensus       205 ----------------------------------~~l~---~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~a--Ll-Pl~  244 (524)
T PF05977_consen  205 ----------------------------------SALR---EGLRYVRSSPPLRSVLLRSFLFNLFASAVWA--LL-PLF  244 (524)
T ss_pred             ----------------------------------hhHH---HHHHHHhcchHHHHHHHHHHHHHHhhhHHHH--hh-hHH
Confidence                                              0001   1222233333333332222211111111111  11 111


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLL  316 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (413)
                      .       .+.++.   ............+++.+.|.++.+.+.+|+++++.+..+.+...+.++.+.+..+.+.....+
T Consensus       245 a-------~~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  245 A-------RDVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             H-------HHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            0       001111   112222334455666777888888888888877777777766666666555555555444444


Q ss_pred             HHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Q 015075          317 FGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  393 (413)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  393 (413)
                      +..+++.........+...+..|++.||...++..++...+..++..+.|.+.+..+...++.+.+++.+++.++..
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444556677889999999999999999998888888899999888888777666665555555544444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.79  E-value=4.6e-18  Score=164.12  Aligned_cols=367  Identities=17%  Similarity=0.181  Sum_probs=207.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHH-HHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIF-RCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~-R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      +.+++.+.+.||+|.|++.+.+.++.+++.++.+|+++++.+++. =++.|+|.|.. ..+...+..++ +++|+.++|+
T Consensus        96 ~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gi  174 (509)
T KOG2504|consen   96 LAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGI  174 (509)
T ss_pred             HhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhh
Confidence            457788999999999999999999999999999999999887664 47889998865 34445555544 6889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc-CCCCchHHhhccChHHHHHHHHHHHHHcCCCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL-APESPRYLCAKARTVDAHRILEKMAFVNQTKLPP  159 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~-~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~  159 (413)
                      ...+..+|.++-|++.-.+.+..|||+.+++.+.+.+-.+..-.. -|.+++-.   .+.++..+.       .+.+.+.
T Consensus       175 a~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~~~~~~~~-------~~~~~~~  244 (509)
T KOG2504|consen  175 AVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK---PNEEKDLRN-------SAASVES  244 (509)
T ss_pred             hhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---chhhhhhcc-------ccccccc
Confidence            999999999999999999999999999998887777554443333 33333211   011111000       0000000


Q ss_pred             Cccccchhhhhhhhccc---cccccccch----hhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh
Q 015075          160 GILVSDKAIKENEESNL---LRDTHMLSM----TRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL  232 (413)
Q Consensus       160 ~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (413)
                      .....+...+.++....   .......+.    .....++.....-++..+..+.    .+...+......+.++.....
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~----fl~~~~~~~~~~~g~~~p~~~  320 (509)
T KOG2504|consen  245 TPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK----FLLLALSNLFAYLGFNVPFVY  320 (509)
T ss_pred             cccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch----HHHHHHHHHHHHHHHHHHHHH
Confidence            00000000000000000   000000000    0000000000000111122221    122222223333444433333


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHhcchhH
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG--RKLSMVLMFVSACIFLLPLVFHQSAV  310 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~  310 (413)
                      .+.....        .+.+..   .......+.++..+.|.++.|++.|+-.  ++.....+.+++++......+.++..
T Consensus       321 l~~~~~~--------~g~~~~---~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~  389 (509)
T KOG2504|consen  321 LPSYAKS--------LGLSSN---DAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV  389 (509)
T ss_pred             HHHHHhh--------cCCChh---hhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3222111        111111   1222344667778899999999999987  34444555555555443333333332


Q ss_pred             HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchh-HHHHHHHHHHHHHH
Q 015075          311 VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR-LAVILFEVVFVLAI  389 (413)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~~~~  389 (413)
                      .........+++..........+..|+.+.+.-+.+.|+...+..++..++|.+.+.+.|.++.+ ..+...+++.+++.
T Consensus       390 ~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~  469 (509)
T KOG2504|consen  390 GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA  469 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence            22222222233333344445567889999999999999999999999999999999888887744 44555566666665


Q ss_pred             HHhhcc
Q 015075          390 ASSLLF  395 (413)
Q Consensus       390 ~~~~~~  395 (413)
                      +..++.
T Consensus       470 ~~~~~~  475 (509)
T KOG2504|consen  470 VLLLIL  475 (509)
T ss_pred             HHHHHh
Confidence            555544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.78  E-value=8.7e-17  Score=157.01  Aligned_cols=113  Identities=14%  Similarity=0.104  Sum_probs=95.9

Q ss_pred             chhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC--cchHHHH
Q 015075            6 YSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRWMVA   80 (413)
Q Consensus         6 ~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~   80 (413)
                      +++|+++|| +|||+++..+.+++.++..++++++ +...+++.|+++|++.|.. +...+++.|++|+++  |+...++
T Consensus        75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~  154 (500)
T PRK09584         75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTM  154 (500)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchH
Confidence            578999999 5999999999999999999998875 4667778999999998865 666688999998754  4557788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHH
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA  118 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~  118 (413)
                      +..+.++|..++|.+++.+.++.|||+.|.+.++..++
T Consensus       155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            88999999999999999999989999999987764433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.77  E-value=1.8e-17  Score=165.43  Aligned_cols=127  Identities=12%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc-------------------------------------------
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-------------------------------------------   39 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~-------------------------------------------   39 (413)
                      +++++.|+++||+|||+.+.++.+++++++++.++.+                                           
T Consensus        83 ~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  162 (633)
T TIGR00805        83 LLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSEC  162 (633)
T ss_pred             HHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccccccccc
Confidence            5678899999999999999999999999999987752                                           


Q ss_pred             --------cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Q 015075           40 --------NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL-------  103 (413)
Q Consensus        40 --------~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~-------  103 (413)
                              .+..++++|+++|+|.+.. +...+|+.|++|+++|++..+++..+..+|..+|+++++.+.+.+       
T Consensus       163 ~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~  242 (633)
T TIGR00805       163 QKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVN  242 (633)
T ss_pred             ccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCC
Confidence                    2567889999999999875 677899999999999999999999999999999999998876532       


Q ss_pred             ---------------ChHHHHHHhhHHHHHHHHHhhcCCCC
Q 015075          104 ---------------NWRWLLAFSSVPSFALLLFYGLAPES  129 (413)
Q Consensus       104 ---------------~Wr~~f~~~~i~~~~~~~~~~~~pEs  129 (413)
                                     +||..|++.+++.++..+.++++||+
T Consensus       243 ~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       243 TEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                           27777888888777765556667765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=1.2e-15  Score=144.97  Aligned_cols=311  Identities=15%  Similarity=-0.026  Sum_probs=164.3

Q ss_pred             hHhhhhcCChHHHHHHHHH-HHHHHHHHh---hccc-HHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHH
Q 015075            9 GIISDNYGRRKSFLGIAMV-TSVAGLLSS---FSPN-YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         9 g~l~Dr~Grr~~~~~~~~l-~~~~~~~~~---~a~~-~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      ++..||+||||..++...+ ........+   ...+ ..+++..-++.++..+.. +..-.+..|..++++|+...+...
T Consensus        60 ~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~  139 (390)
T TIGR02718        60 NWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQI  139 (390)
T ss_pred             ccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHH
Confidence            4467778999987555533 222222222   2222 233344444444443333 445567789999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCcc
Q 015075           83 AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGIL  162 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  162 (413)
                      .+..+|.++++.+.+.+.+..|||..|++.++..++..+..++.+|+++.   +.+.                       
T Consensus       140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~-----------------------  193 (390)
T TIGR02718       140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA-----------------------  193 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc-----------------------
Confidence            88899999999888888888999999999888776654444444443210   0000                       


Q ss_pred             ccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCCCc
Q 015075          163 VSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDNK  242 (413)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  242 (413)
                        +++    +                        ...++..++++..+...............++.  +....+.     
T Consensus       194 --~~~----~------------------------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~l~-----  236 (390)
T TIGR02718       194 --PLA----R------------------------RASLFRFFRRPLAWSLLALALLSAMTAVSGFG--LSKLYLV-----  236 (390)
T ss_pred             --chh----h------------------------HHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHH--HhhHHHH-----
Confidence              000    0                        00111122222222222222221111111111  1111111     


Q ss_pred             cCccccccCCCCChhHHHHHHHH-HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHhc-----chhHHHHHH
Q 015075          243 CGSKVLHADKSKDNSLYVDVFIA-SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF-LLPLVFH-----QSAVVTTVL  315 (413)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~  315 (413)
                          ..+.+....+   ...... ....+.+.++.|++.||+|+|+....+.+..... +......     .........
T Consensus       237 ----~~G~s~~~ig---~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       237 ----DAGWPLEWIG---RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             ----hcCCCHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence                0112111111   111122 2345667889999999999998877655443221 1111111     111111111


Q ss_pred             HHHHHHHhhhhhhhhheeccccccc-chhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPT-SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAI  389 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~  389 (413)
                      .....++.....+.......+..++ +.+++..++.+++.++++.++|.+.+.+.+..+....+...+++.+++.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            1111111222223344454555655 8899999999999999999999999999887776555655555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.76  E-value=5.2e-16  Score=148.21  Aligned_cols=347  Identities=14%  Similarity=0.090  Sum_probs=190.7

Q ss_pred             ccccchhhHhhh----hcCChHHHHHH-HHHHHHHHHHHhhcccHHHHHH------------HHHHhhh-----cccch-
Q 015075            2 LLGAYSWGIISD----NYGRRKSFLGI-AMVTSVAGLLSSFSPNYVSLVI------------FRCFVGV-----GLGGV-   58 (413)
Q Consensus         2 ~~G~~~~g~l~D----r~Grr~~~~~~-~~l~~~~~~~~~~a~~~~~l~~------------~R~l~G~-----~~g~~-   58 (413)
                      ++.+++.|+++|    |+|||+.++.. .+...++.++.++++++..++.            .+++.|+     +.... 
T Consensus        53 ~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~  132 (477)
T TIGR01301        53 LLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQ  132 (477)
T ss_pred             HHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999    59999999876 5555566677778777542221            3444443     44433 


Q ss_pred             hHHHHHHHhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHH--hcC-------------CChHHHHHHhhHHHHHH-H
Q 015075           59 PVFLAYFLEFVPVSHR--GRWMVALSAFWTAGTIFEASLAWVV--MTR-------------LNWRWLLAFSSVPSFAL-L  120 (413)
Q Consensus        59 ~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~~~~~~l~~~l--~~~-------------~~Wr~~f~~~~i~~~~~-~  120 (413)
                      +...+++.|.+|+++|  +.+.++.+.+.++|.++++.+++..  ...             .+-|+.|++.++..++. .
T Consensus       133 ~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l  212 (477)
T TIGR01301       133 GPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTY  212 (477)
T ss_pred             HHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHH
Confidence            4556789999999865  6788999999999999999988764  111             16788999887766654 4


Q ss_pred             HHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchh
Q 015075          121 LFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSF  200 (413)
Q Consensus       121 ~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (413)
                      +..+..+|.|...  .++.++     ++                   .+++++.+   .    +      ...++   -+
T Consensus       213 ~t~~~v~E~~~~~--~~~~~~-----~~-------------------~~~~~~~~---~----~------~~~~~---i~  250 (477)
T TIGR01301       213 IALSAVKENPLIG--SDDFIN-----SE-------------------AAPPSKHG---E----E------AFFGE---LF  250 (477)
T ss_pred             HHeeeeeccCCCc--cccchh-----hh-------------------cccccccc---h----h------hhHHH---HH
Confidence            4556788876311  000000     00                   00000000   0    0      00000   11


Q ss_pred             hhhcc-chhhhHHHHHHHHHHHHHHHhhhHHhh-hhhccCCCCccCccccccCCCC-----Ch---hHHHHHHHHHhhhh
Q 015075          201 FMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLL-TSKLSSGDNKCGSKVLHADKSK-----DN---SLYVDVFIASLAEL  270 (413)
Q Consensus       201 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~  270 (413)
                      +.+.+ |+..+.   +....+.+.+.++...++ +++..       .+.++.++..     ++   .. ....+.++...
T Consensus       251 ~~~~~mP~~m~~---l~~vqffsW~a~f~~~~y~T~~vg-------~~v~~~~~~~~~~y~~gvr~G~-~~l~~~s~~~~  319 (477)
T TIGR01301       251 GAFKYLPRPVWI---LLLVTCLNWIAWFPFILFDTDWMG-------REVYGGSVNQGAKYDDGVRAGA-FGLMLNSVVLG  319 (477)
T ss_pred             HHHHHCCHHHHH---HHHHHHHHHHHHHHHHHhccHHHH-------HHHcCCCCcchhHHHHHHHHHH-HHHHHHHHHHH
Confidence            11111 222221   222222222222222221 11111       0112211111     11   00 11223333333


Q ss_pred             hHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHhcch---------------------hHHHHHHHHHHHHHhhhhhh
Q 015075          271 PGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPLVFHQS---------------------AVVTTVLLFGVRMCVTGTIT  328 (413)
Q Consensus       271 ~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~  328 (413)
                      +..++..++.+|+|+ |.....+.++..+.+....+..+                     .....+.+...+.......+
T Consensus       320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s  399 (477)
T TIGR01301       320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS  399 (477)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence            455566778889985 66666665555444443322110                     12233333344455556778


Q ss_pred             hhheeccccccc--chhhhHHHHHHhhhhhhHhHHHHHHHHHhhccch--hHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          329 VATIYAPEIYPT--SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL--RLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       329 ~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +++++.++..|.  +..|.-.|+.|.+-.+..++.....+.+.+..+.  ...+.+-++..+++.+...+++|.++.
T Consensus       400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            899999999995  4558889999998888777777666654444432  234555567777888888888887764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.72  E-value=8.1e-16  Score=148.97  Aligned_cols=318  Identities=12%  Similarity=0.070  Sum_probs=174.4

Q ss_pred             cchhhHhhhhcC-----ChHHHHHHHHHHH-HHHHHHhhcccHHHHH-HHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            5 AYSWGIISDNYG-----RRKSFLGIAMVTS-VAGLLSSFSPNYVSLV-IFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         5 ~~~~g~l~Dr~G-----rr~~~~~~~~l~~-~~~~~~~~a~~~~~l~-~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .++||+++||++     ||+.++++.++.+ ++....+..++..... +++++.+++.+.. ...-.+..|..+ +++..
T Consensus        77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~  155 (468)
T TIGR00788        77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSA  155 (468)
T ss_pred             HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCc
Confidence            356999999998     7887777777763 4434444445644444 4888999987765 566788899988 55544


Q ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHc
Q 015075           77 WMVALSAF---WTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN  153 (413)
Q Consensus        77 ~~~~~~~~---~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~  153 (413)
                      ..+.....   ..+|.++++.+++.+.+..+||..|++.+...++..+...++||++.....+.+.++  ..       +
T Consensus       156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~--~~-------~  226 (468)
T TIGR00788       156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL--EM-------N  226 (468)
T ss_pred             CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc--hh-------h
Confidence            33333333   448999999999999888999999988877776666666777886421000000000  00       0


Q ss_pred             CCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhh
Q 015075          154 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLT  233 (413)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (413)
                                 ........                 .+..++.....+..++++.....++..+.   +   |.......
T Consensus       227 -----------~~~~~~~~-----------------~~~~~~~~~~l~~~l~~~~i~~~l~fifl---~---~~~~~~~~  272 (468)
T TIGR00788       227 -----------MALLTLGV-----------------LANVKVQILGLRGAIQLLEIAKPLIFIFL---S---YANLPGAS  272 (468)
T ss_pred             -----------hhhhhhhH-----------------HHHHHHHHHHHHHHHhcHHHHHHHHHHHH---H---HhhcCCCC
Confidence                       00000000                 00000000111111222222111111111   0   10000000


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-h----c--
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV-F----H--  306 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~-~----~--  306 (413)
                      ....    .......+++....+   ......+++.+++....+.+.+|++.|+.+..+.+...+...... .    .  
T Consensus       273 ~~~f----~~~~~~lG~s~~~~G---~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~  345 (468)
T TIGR00788       273 GSVF----CATTQCLPGGPSFSG---MSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA  345 (468)
T ss_pred             ceeE----EEEcccCCCCcchhh---hHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc
Confidence            0000    000011233333333   223345577788888888888999999888777666654332211 0    0  


Q ss_pred             ---chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc
Q 015075          307 ---QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH  373 (413)
Q Consensus       307 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~  373 (413)
                         .+............+...........+..++.|++.+++..++.+++.++|..+++.+.+.+.+..+
T Consensus       346 ~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       346 FGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             cCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               1111111111122222222334457788999999999999999999999999999988887776654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09669 putative symporter YagG; Provisional

Probab=99.70  E-value=1e-14  Score=140.99  Aligned_cols=300  Identities=14%  Similarity=0.099  Sum_probs=160.4

Q ss_pred             cccchhhHhhhh----cCChHH-HHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhc-
Q 015075            3 LGAYSWGIISDN----YGRRKS-FLGIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFV-   69 (413)
Q Consensus         3 ~G~~~~g~l~Dr----~Grr~~-~~~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~-   69 (413)
                      +..++.|+++||    +|||+. ++.+.+..+++.++....|+      +..+++.-++.+.+.... ....++..|+. 
T Consensus        60 i~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~  139 (444)
T PRK09669         60 VTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITN  139 (444)
T ss_pred             cccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC
Confidence            467888999998    888555 55666777777666555553      345555666666544333 33447788988 


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChHHHHHHhhHHHHHHHHH-hhcCCCCchHHhhccChHH
Q 015075           70 PVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-------RLNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVD  141 (413)
Q Consensus        70 p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~~l~~~~~~~~  141 (413)
                      ++++|++..+.......+|..+++.+...+..       ..+|+..+.+.++..++..+. .+..+|.++-         
T Consensus       140 ~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~---------  210 (444)
T PRK09669        140 DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP---------  210 (444)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC---------
Confidence            55889998888888888887777655443321       347888887777666554333 3333332110         


Q ss_pred             HHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHH-H
Q 015075          142 AHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLF-F  220 (413)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  220 (413)
                                             +   ++ ++.                    +..+.++..++.+..+......+.. .
T Consensus       211 -----------------------~---~~-~~~--------------------~~~~~~~~~~~n~~~~~l~~~~~~~~~  243 (444)
T PRK09669        211 -----------------------E---VD-NSS--------------------SVWKDLKLLLGNSQWRIMFIFNVVLLT  243 (444)
T ss_pred             -----------------------C---Cc-CCC--------------------CHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence                                   0   00 000                    0001122222222222211111111 1


Q ss_pred             HHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Q 015075          221 ANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFL  300 (413)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~  300 (413)
                      ...... .   ...++..         +.... .+.. ........+..+++.++.++++||+|+|+....+.+...+..
T Consensus       244 ~~~~~~-~---~~~y~~~---------~~~~~-~~~~-~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  308 (444)
T PRK09669        244 AVVTRG-G---ATLYYVN---------YVLLR-PDLA-TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILS  308 (444)
T ss_pred             HHHHHh-h---hhheeee---------eecCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            111000 0   0000100         00000 1111 111223334556778888999999999988776655443222


Q ss_pred             H-HHHh-cchhHHHHHHHHHHHHHhhhhhhhhheecccccc-------cchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          301 L-PLVF-HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP-------TSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       301 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      . .... .++............+......+..+.+.+|..+       .+..+...|+.+.+.++|..++|.+.+.+++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        309 ALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             HHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2222 2232222222333334444555677888888875       34556778888888999999999988877765


Q ss_pred             cc
Q 015075          372 CH  373 (413)
Q Consensus       372 ~~  373 (413)
                      .+
T Consensus       389 ~G  390 (444)
T PRK09669        389 VD  390 (444)
T ss_pred             cC
Confidence            43

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.70  E-value=8.8e-14  Score=133.75  Aligned_cols=336  Identities=20%  Similarity=0.250  Sum_probs=189.9

Q ss_pred             cchhhHhhhhcCChHHHHHHH-HHHHHHHHHHhhc-ccHHH-HHHHHHHhhhcccch-hHHHHHHHhhccCCCc------
Q 015075            5 AYSWGIISDNYGRRKSFLGIA-MVTSVAGLLSSFS-PNYVS-LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHR------   74 (413)
Q Consensus         5 ~~~~g~l~Dr~Grr~~~~~~~-~l~~~~~~~~~~a-~~~~~-l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~R------   74 (413)
                      .++.|.++|+-|+||.++... ++..+++.+..+. ++-+. ..+.-++.-++.+.. ....+++-|..+++++      
T Consensus        87 ~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~  166 (477)
T PF11700_consen   87 APFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAARE  166 (477)
T ss_pred             HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhh
Confidence            467799999999888765544 5555666666664 43333 233333333343332 3345788899999988      


Q ss_pred             --------------------chHHHHHHHHHHHHHHHHHHHHHHHhcC--------CChHHHHHHhhHHHHHH-HHHhhc
Q 015075           75 --------------------GRWMVALSAFWTAGTIFEASLAWVVMTR--------LNWRWLLAFSSVPSFAL-LLFYGL  125 (413)
Q Consensus        75 --------------------g~~~~~~~~~~~~G~~~~~~l~~~l~~~--------~~Wr~~f~~~~i~~~~~-~~~~~~  125 (413)
                                          ++.++.-.....+|.++.-.+...+...        .+-|..+.+.++--++. +...++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~  246 (477)
T PF11700_consen  167 PSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLW  246 (477)
T ss_pred             hhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence                                9999988777788887766555544321        23477676666654443 556677


Q ss_pred             CCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc
Q 015075          126 APESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS  205 (413)
Q Consensus       126 ~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (413)
                      +||.|+-   ++.. +..+.++                                           ...+..+..++...+
T Consensus       247 ~~~~~~~---~~~~-~~~~~~~-------------------------------------------~g~~~l~~t~k~~~~  279 (477)
T PF11700_consen  247 LPDRPGP---RPLP-SGSSYLR-------------------------------------------FGFKRLWRTFKEIRK  279 (477)
T ss_pred             CCCCCCC---CCCC-cchhHHH-------------------------------------------HHHHHHHHHHHHHHh
Confidence            7877641   0000 0000000                                           000000111122211


Q ss_pred             chhhhHHHHHHHHHH--HHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 015075          206 RKLIRTTLLLWVLFF--ANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI  283 (413)
Q Consensus       206 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~  283 (413)
                      .|.....++.++.+.  .+.+......+...            .++++.   .......++..+.+++|+++.|++.||+
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~------------~lg~s~---~~l~~~~l~~~i~a~~Ga~~~g~l~~r~  344 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATE------------VLGMST---TQLIVFGLVVQIVAIIGALLFGWLQDRF  344 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            122222233333221  11111111122111            122222   2233445667778899999999999999


Q ss_pred             Chh--HHHHHHHHHHHH-HHHHHH-h------cchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhh
Q 015075          284 GRK--LSMVLMFVSACI-FLLPLV-F------HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSL  353 (413)
Q Consensus       284 grr--~~~~~~~~~~~~-~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~  353 (413)
                      |-|  +++..+.+...+ .+..+. +      .++.+....+-...+++..+.++..-++.+|+.|+...+.-.|+....
T Consensus       345 g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~  424 (477)
T PF11700_consen  345 GPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAIT  424 (477)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            988  555544433322 222222 0      223333333333445556667788889999999999999999999999


Q ss_pred             hhhhHhHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHhhcccccccCcc
Q 015075          354 GKVGGMVCPLVAVGLVTSCHL-RLAVILFEVVFVLAIASSLLFPFETMGRE  403 (413)
Q Consensus       354 ~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~  403 (413)
                      ++..++++|.+.+.+.+.+++ ...+....++.+++. ..++..++.|+|+
T Consensus       425 gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl-~ll~~v~~~~g~~  474 (477)
T PF11700_consen  425 GKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL-ILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-HHHhhccchhhhh
Confidence            999999999999988888764 455555555555554 4445566666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.64  E-value=1.3e-13  Score=134.35  Aligned_cols=305  Identities=10%  Similarity=0.033  Sum_probs=155.2

Q ss_pred             cccchhhHhhh----hcCCh-HHHHHHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhc-
Q 015075            3 LGAYSWGIISD----NYGRR-KSFLGIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFV-   69 (413)
Q Consensus         3 ~G~~~~g~l~D----r~Grr-~~~~~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~-   69 (413)
                      +..+++|+++|    |+||| +.+..+.+..+++..+.-..++      +..+++.-++.+++.... ....++..|.. 
T Consensus        57 i~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~  136 (473)
T PRK10429         57 INDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL  136 (473)
T ss_pred             HhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC
Confidence            45677899999    66994 5555666766766655544332      334445555555554433 33446778988 


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChHHHHHHhhHHHHHHH-HHhhcCCCCchHHhhccChHH
Q 015075           70 PVSHRGRWMVALSAFWTAGTIFEASLAWVVMT-------RLNWRWLLAFSSVPSFALL-LFYGLAPESPRYLCAKARTVD  141 (413)
Q Consensus        70 p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~Wr~~f~~~~i~~~~~~-~~~~~~pEsp~~l~~~~~~~~  141 (413)
                      ++++|.+..++-..+.++|..+.+.+...+.+       ..+|+....+.++..++.. ...+..+|.++.   +     
T Consensus       137 ~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~---~-----  208 (473)
T PRK10429        137 DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS---D-----  208 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc---c-----
Confidence            58999999988666667775555444433211       2357777666666555433 333445554310   0     


Q ss_pred             HHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHH
Q 015075          142 AHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFA  221 (413)
Q Consensus       142 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (413)
                                             +.+.++ +++                   .+..+.++.+++.|..+..+..   .+.
T Consensus       209 -----------------------~~~~~~-~~~-------------------~~~~~~~~~~~~n~~~~~ll~~---~~~  242 (473)
T PRK10429        209 -----------------------NQVSAE-GSH-------------------LTLKDIVALIYKNDQLSCLLGM---ALA  242 (473)
T ss_pred             -----------------------cccccc-ccC-------------------CCHHHHHHHHhcCHHHHHHHHH---HHH
Confidence                                   000000 000                   0000112222222222211111   111


Q ss_pred             HHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Q 015075          222 NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  301 (413)
Q Consensus       222 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  301 (413)
                      .....+.......++..         +....  .........+..+..+++.++.+++.||+|+|+.+..+.....+..+
T Consensus       243 ~~~~~~~~~~~~~y~~~---------y~~~~--~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~  311 (473)
T PRK10429        243 YNIASNIINGFAIYYFT---------YVIGD--ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG  311 (473)
T ss_pred             HHHHHHHHhhheeeEEE---------EECCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            11111111111111110         00000  11111122234456677888899999999999988766554332222


Q ss_pred             HHH---h--cchhHHHHHHHHHHHHHhhhhhhhhheecccccc-------cchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          302 PLV---F--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP-------TSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       302 ~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      .+.   .  ..+.+..........+.........+++.+|..+       .+..|...|....+.+++..+++.+.+.++
T Consensus       312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        312 VLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221   1  1222222222222233334455667788888855       455566778888888999999998888777


Q ss_pred             hcc
Q 015075          370 TSC  372 (413)
Q Consensus       370 ~~~  372 (413)
                      +..
T Consensus       392 ~~~  394 (473)
T PRK10429        392 GLI  394 (473)
T ss_pred             HHc
Confidence            543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=7.2e-13  Score=119.88  Aligned_cols=314  Identities=14%  Similarity=0.139  Sum_probs=193.0

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSS---FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~---~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      ++++..|++.+|+|+|+.++.++.++.++..+..   -..+|..++++-++.|.|.|.. ..+.+|+....|+++-.+.+
T Consensus        63 ~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rl  142 (422)
T COG0738          63 IMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRL  142 (422)
T ss_pred             HHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHH
Confidence            5677889999999999999999999999999884   5567999999999999999975 67789999999998888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-------------------CChHHHHHHhhHHHHHHHHHhh--cCCCCchHHhhcc
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTR-------------------LNWRWLLAFSSVPSFALLLFYG--LAPESPRYLCAKA  137 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~-------------------~~Wr~~f~~~~i~~~~~~~~~~--~~pEsp~~l~~~~  137 (413)
                      .+.|..+.+|.+++|+++..+...                   -.||+++...+...+++.+...  ..||-+.      
T Consensus       143 nl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------  216 (422)
T COG0738         143 NLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------  216 (422)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc------
Confidence            999999999999999998876541                   1366666655444333322221  1222110      


Q ss_pred             ChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHH
Q 015075          138 RTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWV  217 (413)
Q Consensus       138 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (413)
                                                     +.+++.   +.              ++  .....+++.|+.+...+..+
T Consensus       217 -------------------------------~~~~~~---~~--------------~~--~~~~~l~~~~~~~~gvl~~F  246 (422)
T COG0738         217 -------------------------------AAPSLG---AS--------------GS--AGLSSLFQNKHLRLGVLAIF  246 (422)
T ss_pred             -------------------------------cccccc---cc--------------cc--chHHHHHhChHHHHHHHHHH
Confidence                                           000000   00              00  01222334444444444444


Q ss_pred             HHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHH
Q 015075          218 LFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSAC  297 (413)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  297 (413)
                      ++.........  ++.+.+..         .......+...+.  ...-.+.++|.+++.++..|+...+.+....+...
T Consensus       247 lYVG~Eva~gs--fl~~y~~~---------~~g~~~~~aa~~~--s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i  313 (422)
T COG0738         247 LYVGAEVAIGS--FLVSYLEE---------LLGLNEQQAAYYL--SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI  313 (422)
T ss_pred             HHHhHHHHHHH--HHHHHHHh---------cCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            44443333221  11111110         0000111122222  22233456788888888889887777766665555


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHH
Q 015075          298 IFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLA  377 (413)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~  377 (413)
                      ..++......+ ...+..++..+++....++..+....+..| +.-+. .|..-.++-+||.+.|++.|.+.|..+....
T Consensus       314 ll~~~~~l~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~-~s~~l~maivGGAiiP~l~G~i~d~~g~~~~  390 (422)
T COG0738         314 LLLLAVALIGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSV-GSGLLVMAIVGGAIIPPLQGVIADMFGIQLT  390 (422)
T ss_pred             HHHHHHHHhcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccc-cceeeeeheecchHHHHHHHHHHHhhhhHHH
Confidence            54444444434 333444555566777778888888888888 33333 3444455678899999999999888766555


Q ss_pred             HHHHHHHHHHH
Q 015075          378 VILFEVVFVLA  388 (413)
Q Consensus       378 ~~~~~~~~~~~  388 (413)
                      +.....+|.+.
T Consensus       391 ~~~~pllc~ly  401 (422)
T COG0738         391 FLIVPLLCYLY  401 (422)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.61  E-value=8.9e-13  Score=120.82  Aligned_cols=272  Identities=13%  Similarity=0.115  Sum_probs=158.5

Q ss_pred             hcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Q 015075           37 FSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-------------  102 (413)
Q Consensus        37 ~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~-------------  102 (413)
                      ...+|..+++.-++.|.|.+.. +...+|+++..|++++.+.+++.+.++.+|.+++|.++..+...             
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999975 77889999999999999999999999999999999998876621             


Q ss_pred             ---CChHHHHHHhhHHHHHHHHHh--hcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhcccc
Q 015075          103 ---LNWRWLLAFSSVPSFALLLFY--GLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLL  177 (413)
Q Consensus       103 ---~~Wr~~f~~~~i~~~~~~~~~--~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (413)
                         .+||+++++.+...++..+.+  .-+||.++    +++                              ++...++  
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~----~~~------------------------------~~~~~~~--  129 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE----ADV------------------------------ARVSSGD--  129 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc----ccc------------------------------ccccccc--
Confidence               479999885555443333332  23454311    000                              0000000  


Q ss_pred             ccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHH--hhhHHhhhhhccCCCCccCccccccCCCCC
Q 015075          178 RDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFS--YYGAVLLTSKLSSGDNKCGSKVLHADKSKD  255 (413)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  255 (413)
                       ..           + +      +..++.+......+..+.+.....+  .+...++...          +.++.+... 
T Consensus       130 -~~-----------~-~------~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~----------~~~g~s~~~-  179 (310)
T TIGR01272       130 -TT-----------Q-K------TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDP----------HALGLPEDQ-  179 (310)
T ss_pred             -cc-----------c-h------hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccCCCCHHH-
Confidence             00           0 0      0011111111111111122211111  1111222110          001121111 


Q ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecc
Q 015075          256 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAP  335 (413)
Q Consensus       256 ~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (413)
                      ..  ........+..+|.++++++.||+|+|+.+..+...+.+........+... ....+....++....++.......
T Consensus       180 a~--~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~  256 (310)
T TIGR01272       180 AA--HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLAL  256 (310)
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  123334445678999999999999988877666655554443332222222 122333444555666777777788


Q ss_pred             cccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHH
Q 015075          336 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVI  379 (413)
Q Consensus       336 e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~  379 (413)
                      +.+|++ .+++.++. .++.+|+.+.|.+.+.+.|..+...+++
T Consensus       257 ~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       257 NALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             hhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            888765 45666764 6788999999999998888777655554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.61  E-value=1.9e-12  Score=122.22  Aligned_cols=330  Identities=16%  Similarity=0.223  Sum_probs=175.4

Q ss_pred             ccccchhhHhhhhcCC-hHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHH
Q 015075            2 LLGAYSWGIISDNYGR-RKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Gr-r~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      +++++++|+++||.++ |+.+.+..++.++........++++.+++.-++..+..... |..-++..+....++  .--+
T Consensus        51 i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--~~YG  128 (400)
T PF03825_consen   51 IVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--KDYG  128 (400)
T ss_pred             HHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--CCCC
Confidence            4678899999999874 66666766777777777778889998888877777765543 544455555544221  1122


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHhcC---CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCC
Q 015075           80 ALSAFWTAGTIFEASL-AWVVMTR---LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQT  155 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l-~~~l~~~---~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~  155 (413)
                      -.-...++|-++++.. +..+...   .+..+.+++.+...++.....+.+|+.|+-   +...+               
T Consensus       129 ~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~---~~~~~---------------  190 (400)
T PF03825_consen  129 RIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK---RSAKE---------------  190 (400)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc---cccCC---------------
Confidence            3344444555544332 1222222   222334555555444444455667877620   00000               


Q ss_pred             CCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHh-hhHHhhhh
Q 015075          156 KLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSY-YGAVLLTS  234 (413)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  234 (413)
                                   +.++                     +.....++.+.+|+...-.+...+........| |....+..
T Consensus       191 -------------~~~~---------------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~  236 (400)
T PF03825_consen  191 -------------SVKK---------------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE  236 (400)
T ss_pred             -------------Cccc---------------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0000                     000001122223333322222222222222211 11122211


Q ss_pred             hccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc-chhHHHH
Q 015075          235 KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-QSAVVTT  313 (413)
Q Consensus       235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-~~~~~~~  313 (413)
                       .            +.  ...........+..+++++-....+++..|+|-|+++.++++...+=...+... ++.+...
T Consensus       237 -~------------gg--~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~  301 (400)
T PF03825_consen  237 -L------------GG--YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIV  301 (400)
T ss_pred             -c------------cc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence             1            00  001111122235666788888889999999999998888777765544343333 3333222


Q ss_pred             HHHH----HHHHHhhhhhhhhheecccccccchhhhHHHHHHhhh-hhhHhHHHHHHHHHhhccchhHH------HHHHH
Q 015075          314 VLLF----GVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLA------VILFE  382 (413)
Q Consensus       314 ~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~------~~~~~  382 (413)
                      ....    .-+............|..+..|++.|+++.++.+.+. .+|+.++..+.|.+.+..+....      +.+.+
T Consensus       302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a  381 (400)
T PF03825_consen  302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFA  381 (400)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            2211    1233333345566778999999999999999998875 68999999999999987654322      22233


Q ss_pred             HHHHHHHHHhhccccccc
Q 015075          383 VVFVLAIASSLLFPFETM  400 (413)
Q Consensus       383 ~~~~~~~~~~~~~~~et~  400 (413)
                      ++.++..+...++-+|++
T Consensus       382 ~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  382 VMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHHHHHHhhccCCC
Confidence            333444444444444543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.61  E-value=7.2e-14  Score=134.48  Aligned_cols=299  Identities=18%  Similarity=0.212  Sum_probs=175.5

Q ss_pred             ccchhhHhhh----hcCChHHHH-HHHHHHHHHHHHHhhc-c-------cHHHHHHHHHHhhhcccch-hHHHHHHHhhc
Q 015075            4 GAYSWGIISD----NYGRRKSFL-GIAMVTSVAGLLSSFS-P-------NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFV   69 (413)
Q Consensus         4 G~~~~g~l~D----r~Grr~~~~-~~~~l~~~~~~~~~~a-~-------~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~   69 (413)
                      -.++.|+++|    |+|||+.++ .+.++.+++.+++... |       ....+.+.-++..++.... ....++..|..
T Consensus        53 ~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt  132 (428)
T PF13347_consen   53 TDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELT  132 (428)
T ss_pred             cCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccc
Confidence            4568899999    899888765 5667777777777666 4       2334566666666665544 34457788998


Q ss_pred             c-CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHhhHHHHHHHH-HhhcCCCCchHHhhccChH
Q 015075           70 P-VSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-------LNWRWLLAFSSVPSFALLL-FYGLAPESPRYLCAKARTV  140 (413)
Q Consensus        70 p-~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~~l~~~~~~~  140 (413)
                      + +++|.+..+.-+.+..+|.++.+.+...+.+.       .+|++..++.+++.++... ..+..+|.++      +.+
T Consensus       133 ~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~  206 (428)
T PF13347_consen  133 PDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVT  206 (428)
T ss_pred             ccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc
Confidence            8 47899999999888888887666655554421       1699998888777766543 4455566111      000


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHH-HH
Q 015075          141 DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWV-LF  219 (413)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  219 (413)
                                                   +++++                   .+..+.++.+++.|..+......+ .+
T Consensus       207 -----------------------------~~~~~-------------------~~~~~~~~~~~~nr~~~~l~~~~~~~~  238 (428)
T PF13347_consen  207 -----------------------------EQEKK-------------------ISLRDSLRSLFRNRPFRILLLAFFLQW  238 (428)
T ss_pred             -----------------------------ccccc-------------------cccccchhhhcccchHHHHHHHHHHHH
Confidence                                         00000                   000112223333222222222211 11


Q ss_pred             HHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHH
Q 015075          220 FANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIF  299 (413)
Q Consensus       220 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~  299 (413)
                      +..........++....           .+.. ...+   ....+..+..+++.++.++++||+|+|+.+..+.+.....
T Consensus       239 ~~~~~~~~~~~y~~~~v-----------l~~~-~~~~---~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~  303 (428)
T PF13347_consen  239 LAFALMNTFLPYYFTYV-----------LGNE-GLIS---IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALG  303 (428)
T ss_pred             hhhhhhhhHHHHHHHHH-----------hcCc-hhhH---HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHH
Confidence            11111110011111110           0000 1111   1223445566778889999999999999888877776655


Q ss_pred             HHHHHhc--chhHHHHHHHHHHHHHhhhhhhhhheecccccc-------cchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          300 LLPLVFH--QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP-------TSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       300 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      .+.+.+.  .+.............+........+.+.+|..+       ++..|.-.|+.+...+++..+++.+.+.+++
T Consensus       304 ~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  304 FLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            5444432  244444444444455555566778889999887       3556888888888889999999888877765


Q ss_pred             c
Q 015075          371 S  371 (413)
Q Consensus       371 ~  371 (413)
                      .
T Consensus       384 ~  384 (428)
T PF13347_consen  384 L  384 (428)
T ss_pred             H
Confidence            4

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.60  E-value=9.6e-15  Score=142.93  Aligned_cols=147  Identities=16%  Similarity=0.038  Sum_probs=109.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHH---HHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGL---LSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~---~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      +|+++.|+++||+|||+++..+.++..++..   ....+++...++++|++.|++.+.. .....++.|.+|++.||+..
T Consensus       301 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~  380 (490)
T PRK10642        301 FVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL  380 (490)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence            5677889999999999998877665443332   2234556788889999999876643 44556778999999999988


Q ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhc-----cChHHHHHHHHHHH
Q 015075           79 VA-LSAFWTAGTIFEASLAWVVMTR-LNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAK-----ARTVDAHRILEKMA  150 (413)
Q Consensus        79 ~~-~~~~~~~G~~~~~~l~~~l~~~-~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~-----~~~~~a~~~~~~~~  150 (413)
                      ++ ++.+. .+..++|.+.+.+.+. .+|+.++++..+++++..+..+++||||+|+.++     +|.|||++.+++++
T Consensus       381 g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        381 AAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            86 45544 4455677777766654 3588887777777776666667789999998865     89999999988775

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.58  E-value=2.7e-14  Score=114.66  Aligned_cols=128  Identities=24%  Similarity=0.326  Sum_probs=111.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++++++.|++.||+|||+.+..+..+..++.+...++++++.+.+.+++.|++.+.. +....++.|..|+++|++..+.
T Consensus        12 ~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
T TIGR00880        12 LIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGL   91 (141)
T ss_pred             HHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHH
Confidence            356788899999999999999999999999999999999999999999999988765 6667889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPES  129 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pEs  129 (413)
                      .+....+|..+++.+.+.+.+..+|++.+++.++..++.. ...+..||+
T Consensus        92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        92 MSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999998888899999988877766543 344455653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.58  E-value=1.9e-12  Score=124.44  Aligned_cols=116  Identities=15%  Similarity=0.151  Sum_probs=91.8

Q ss_pred             cccchhhHhhhhc-CChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC--CcchH
Q 015075            3 LGAYSWGIISDNY-GRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS--HRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~-Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~--~Rg~~   77 (413)
                      +++++.|+++||+ |||+++.++.++..++.++.+... +...+.+.-.+.++|.|.. +...++++|.+|++  +|...
T Consensus        60 l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sg  139 (493)
T PRK15462         60 VTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGG  139 (493)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccce
Confidence            4678899999999 999999999999999887776543 2233444444444555554 55668899999986  69989


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHH
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA  118 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~  118 (413)
                      .++.....++|..++|.+.+.+.+..|||+.|.+.++..++
T Consensus       140 f~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        140 FSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            99999999999999999999998889999999987664433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.55  E-value=2.3e-12  Score=117.41  Aligned_cols=337  Identities=18%  Similarity=0.184  Sum_probs=188.9

Q ss_pred             cchhhHhhhhcCChHHHHHHH-HHHHHHHHHHhhccc--HHH-HHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHH
Q 015075            5 AYSWGIISDNYGRRKSFLGIA-MVTSVAGLLSSFSPN--YVS-LVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         5 ~~~~g~l~Dr~Grr~~~~~~~-~l~~~~~~~~~~a~~--~~~-l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      +++.|-++|+.|+||.++... ++-.+++.+..++++  ++. .+++-.+..++.... .-.-+++.+..++++-|+.++
T Consensus        75 apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~  154 (438)
T COG2270          75 APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISG  154 (438)
T ss_pred             HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccc
Confidence            456789999999988765544 445666777777776  443 344555666665443 334578889999999899887


Q ss_pred             HHHHHHHHHHHHHHHHHH--HH-h---------------cCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChH
Q 015075           80 ALSAFWTAGTIFEASLAW--VV-M---------------TRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTV  140 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~--~l-~---------------~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~  140 (413)
                      +......+|+++.-....  .+ .               +..+=|..+.+.++--+++ +.+++..||-++-   +....
T Consensus       155 lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~---~~~~~  231 (438)
T COG2270         155 LGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKI---SSPPP  231 (438)
T ss_pred             cccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccc---cccch
Confidence            766666667665433321  11 1               1223455555444433333 2233334433320   00000


Q ss_pred             HHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH
Q 015075          141 DAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF  220 (413)
Q Consensus       141 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (413)
                      ++.                                              .+..|..+.+++....++.....++.+..+.
T Consensus       232 ~~l----------------------------------------------~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~  265 (438)
T COG2270         232 TAL----------------------------------------------RNGFKELKSTFKEIRGRKNLVLFLIARFFYI  265 (438)
T ss_pred             HHH----------------------------------------------HHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            000                                              0001111122233333333333333332221


Q ss_pred             --HHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHH
Q 015075          221 --ANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI  298 (413)
Q Consensus       221 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~  298 (413)
                        .+...-++..+-..            .+|+   ...++.......++.+++|+++.|++.||+|-|+++..+.++..+
T Consensus       266 DGv~til~~~~~fg~~------------~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         266 DGVNTILAMGGVFGAA------------DLGL---SSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             hhHHHHHHHHHHHHHH------------HcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence              11111111111111            1111   223344556677778899999999999999999887777766555


Q ss_pred             HHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHH
Q 015075          299 FLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV  378 (413)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~  378 (413)
                      ..+...+.........+-...+.+..+.++.+-.|..++.|++.-+.-.|+.+..++.+++.+|+..+.+.+.++..-.-
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            44433332222211222233345566778888899999999999999999999999999999999998887777654333


Q ss_pred             HHHHHHHHHHHHHhhcccccccCcchh
Q 015075          379 ILFEVVFVLAIASSLLFPFETMGRELK  405 (413)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~et~~~~l~  405 (413)
                      +...++.+...+..+...|+.++++.+
T Consensus       411 ~~~i~vll~iGl~~L~~v~~~~~~~~~  437 (438)
T COG2270         411 VLSIIVLLLIGLLLLLRVKVPGRREAE  437 (438)
T ss_pred             HHHHHHHHHhhHhhEEeecCCCCcccc
Confidence            333333344445555566666555544

>PRK11462 putative transporter; Provisional

Probab=99.55  E-value=1e-11  Score=120.37  Aligned_cols=117  Identities=17%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             ccchhhHhhhh----cCChHHHH-HHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhcc-
Q 015075            4 GAYSWGIISDN----YGRRKSFL-GIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-   70 (413)
Q Consensus         4 G~~~~g~l~Dr----~Grr~~~~-~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-   70 (413)
                      ..++.|+++||    +|||+.++ .+.+..+++.+++-..|+      ...+.+.-++..++.... ..-.++..|.++ 
T Consensus        61 ~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d  140 (460)
T PRK11462         61 SDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND  140 (460)
T ss_pred             HhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC
Confidence            34677999995    79987665 455677777666655553      334444555555544433 233466778877 


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHhhHHHHHHH
Q 015075           71 VSHRGRWMVALSAFWTAGTIFEASLAWVVMTR-------LNWRWLLAFSSVPSFALL  120 (413)
Q Consensus        71 ~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~Wr~~f~~~~i~~~~~~  120 (413)
                      ++||.+.+++-..+..+|..+++.+...+.+.       .+|+....+.+++.++..
T Consensus       141 ~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        141 PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            78999999999999998887776665544332       368887776666655543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.54  E-value=8e-12  Score=111.54  Aligned_cols=298  Identities=16%  Similarity=0.151  Sum_probs=184.8

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHH
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALS   82 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~   82 (413)
                      -+++..+++.|+|.++.+..++++..++.++-... +...++.+-.+.|.|.+.. ....+.+-|.+|+ +-+..+++|.
T Consensus        63 ~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs  140 (395)
T COG2807          63 FAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYS  140 (395)
T ss_pred             HHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHH
Confidence            45677889999999999999999999999998887 7777888999999988864 4456788899975 4588999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC-ChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCCCCc
Q 015075           83 AFWTAGTIFEASLAWVVMTRL-NWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGI  161 (413)
Q Consensus        83 ~~~~~G~~~~~~l~~~l~~~~-~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~  161 (413)
                      ...++|..+++.+...+.++. |||....+-++|+++.++.++-  ...|.     +.+                     
T Consensus       141 ~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~-----~~~---------------------  192 (395)
T COG2807         141 TSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP--QALRE-----QAA---------------------  192 (395)
T ss_pred             HHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh--hcccc-----ccc---------------------
Confidence            999999999999988888776 7999988888888777666542  21110     000                     


Q ss_pred             cccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHhhhhhccCCCC
Q 015075          162 LVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDN  241 (413)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  241 (413)
                         .      +...                 .++.    ..+++.+.   ...+.+.+-.+.+.||...-|.+.+..+  
T Consensus       193 ---~------~~~~-----------------~~~~----~~vw~~~~---aW~vtLfmGlqS~~~Y~~~~WLP~ili~--  237 (395)
T COG2807         193 ---S------IATK-----------------LVSV----RKVWRSPL---AWQVTLFMGLQSLLYYIVIGWLPAILID--  237 (395)
T ss_pred             ---c------cccc-----------------cccc----cccccCch---hHHHHHHHHhhHHHHHHHHHHHHHHHHH--
Confidence               0      0000                 0000    00111111   1111222234556666665555444211  


Q ss_pred             ccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHH
Q 015075          242 KCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIG-RKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFG  318 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  318 (413)
                            .+.+..+.+.   ...+..+.+++.++....+.+|.. +|+..+...+...+-.+-+.+  .+..+.. +  +.
T Consensus       238 ------~G~sa~~aG~---llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~--~l  305 (395)
T COG2807         238 ------RGLSAAEAGS---LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-A--LL  305 (395)
T ss_pred             ------cCCCHHHhhh---HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-H--HH
Confidence                  1223333332   234556677888899999999754 454443333222221111111  2222222 1  22


Q ss_pred             HHHHhhhhhhhhheecc-cccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHH
Q 015075          319 VRMCVTGTITVATIYAP-EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAV  378 (413)
Q Consensus       319 ~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~  378 (413)
                      .+....+.+++...... ..-.++..+.-.|....+|++-+.++|++.|++.|.++++...
T Consensus       306 lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~  366 (395)
T COG2807         306 LGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAP  366 (395)
T ss_pred             HhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHH
Confidence            22233344454443333 3334567778889999999999999999999999998765443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.49  E-value=1.1e-12  Score=112.56  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             ccchhhHhhh-hcCChHHHHHHHHHHHHHHHHHh---hcccHHHHHHHHHHhhhcccchhH-HHHHHHhhccCCCcchHH
Q 015075            4 GAYSWGIISD-NYGRRKSFLGIAMVTSVAGLLSS---FSPNYVSLVIFRCFVGVGLGGVPV-FLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         4 G~~~~g~l~D-r~Grr~~~~~~~~l~~~~~~~~~---~a~~~~~l~~~R~l~G~~~g~~~~-~~~~~~E~~p~~~Rg~~~   78 (413)
                      =++++|++.| |+|-|..-++-+++..++.++.+   ...+++++..+|++.|+|.....+ ..+|..-|+..+|-+.++
T Consensus        95 lcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vf  174 (459)
T KOG4686|consen   95 LCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVF  174 (459)
T ss_pred             EeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchh
Confidence            4678899999 57777766666666666666553   457899999999999997554443 458899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015075           79 VALSAFWTAGTIFEASL   95 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l   95 (413)
                      |+.....-+|+.+--.+
T Consensus       175 GlqlSvAR~GstvNf~l  191 (459)
T KOG4686|consen  175 GLQLSVARLGSTVNFLL  191 (459)
T ss_pred             hHHHHHHHhhceeeeee
Confidence            99888888887644333

>PRK09848 glucuronide transporter; Provisional

Probab=99.49  E-value=2.8e-11  Score=117.33  Aligned_cols=105  Identities=15%  Similarity=0.085  Sum_probs=68.1

Q ss_pred             hhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHhhhhhhhhheeccccccc----
Q 015075          267 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT----  340 (413)
Q Consensus       267 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~----  340 (413)
                      +..+++..+.+++.||+|+|+.+..+.+...+..+.+.+..  +.+..........+......+..++..+|..|.    
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            34566788899999999999988877665544333333321  222222222222333334445667777777764    


Q ss_pred             ---chhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          341 ---SARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       341 ---~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                         +.+|...|+.+...++|..+++.+.+.+++.
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3568899999999999999999888776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.49  E-value=2.6e-11  Score=112.79  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=93.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..+.+.+...+..++.+|+|.|+.++++..+..+=.....+.++.+.....=..-..-.........-|.++.+|++
T Consensus       265 ~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r  344 (412)
T PF01306_consen  265 WSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR  344 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence            34556677888889999999999999887766655544444444444443222222221111122234567899999999


Q ss_pred             hhhhHHHHHHhh-hhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          342 ARTTGFGVASSL-GKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       342 ~r~~~~g~~~~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      ..++...+...+ .+++.++.+.+.|.+.|..+...++++.+.+.++..++..+.+++.++.
T Consensus       345 lsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  345 LSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            999999997544 4788888888899999998877788888888887777777776655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.2e-10  Score=109.62  Aligned_cols=302  Identities=18%  Similarity=0.171  Sum_probs=168.1

Q ss_pred             ccchhhHhhh----hcCChHHHH-HHHHHHHHHHHHHhhccc------HHHHHHHHHHhhhcccch-hHHHHHHHhhcc-
Q 015075            4 GAYSWGIISD----NYGRRKSFL-GIAMVTSVAGLLSSFSPN------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-   70 (413)
Q Consensus         4 G~~~~g~l~D----r~Grr~~~~-~~~~l~~~~~~~~~~a~~------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-   70 (413)
                      ..++.|.+.|    |+||||.++ .+.+.+++...++-.+++      ....++--.+.|++-... ..-.++..|..+ 
T Consensus        64 ~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d  143 (467)
T COG2211          64 TDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD  143 (467)
T ss_pred             hcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC
Confidence            3567788888    588877654 455888888888888874      233444555666554432 223355667654 


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChHHHHHHhhHHHHHHHHH-hhcCCCCchHHhhccChHHH
Q 015075           71 VSHRGRWMVALSAFWTAGTIFEASLAWVVMT-------RLNWRWLLAFSSVPSFALLLF-YGLAPESPRYLCAKARTVDA  142 (413)
Q Consensus        71 ~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~~l~~~~~~~~a  142 (413)
                      ++||.+..++-+.+..+|.++...+...+..       ..||+..-++.++.+++.++. ++...|.+.         ++
T Consensus       144 ~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---------~~  214 (467)
T COG2211         144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---------ET  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------cc
Confidence            5799999999999999997776655544432       357888877777776665443 333444332         00


Q ss_pred             HHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH-H
Q 015075          143 HRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF-A  221 (413)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  221 (413)
                                              +.+++..+                   ++....+..+++.|..+..+...+..+ .
T Consensus       215 ------------------------~~~~~~~~-------------------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~  251 (467)
T COG2211         215 ------------------------QPTKTGVK-------------------LKLKDSFLLIFKNRPLLLLLLMNLLLFIA  251 (467)
T ss_pred             ------------------------ccCccccc-------------------ccHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence                                    00000000                   000011222232222222222211111 1


Q ss_pred             HHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Q 015075          222 NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL  301 (413)
Q Consensus       222 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~  301 (413)
                      .++..-...++..+.             .. ..+...+..........+.+.++..++++|+|+|+.+..+.++..+...
T Consensus       252 ~~i~~s~~~yy~~y~-------------lg-~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~  317 (467)
T COG2211         252 FNIRGSIMVYYVTYV-------------LG-DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYL  317 (467)
T ss_pred             HHHHhhhhheeEEEE-------------cC-ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            111100001111111             10 1111122223344444556688899999999999999888777766555


Q ss_pred             HHHhcc--hhHHHHHHHHHHHHHhhhhhhhhheeccccc-------ccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          302 PLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIY-------PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       302 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-------p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      .+.+..  +....++..+..........++.|++.+|..       ..|.-|...|+..++..+|..++..+.+.+++.
T Consensus       318 ~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~  396 (467)
T COG2211         318 LLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA  396 (467)
T ss_pred             HHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554432  2333333334444555566778999999887       346667788888888899888887777766644

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.42  E-value=8.8e-13  Score=132.67  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=109.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|+++.|+++||+|||+++..+.++++++.++.+++++...+++++++.|+..++. +...++++|++|.++||+++++
T Consensus       609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi  688 (742)
T TIGR01299       609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGF  688 (742)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            468899999999999999999999999999999999999888999999988876654 6677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp  130 (413)
                      ......+|.+++|.+++.+... +.+.+|++.++..++..++..++||+.
T Consensus       689 ~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       689 LNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999998877653 456677777777766666666779874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.29  E-value=1.8e-11  Score=117.35  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=104.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++.++.|+++||+|||+++..+.++.+++..+...+.    ++..+++.+++.|++.+.. +....++.|++|+++||+.
T Consensus       266 ~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~  345 (418)
T TIGR00889       266 FFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASA  345 (418)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            4567889999999999999999999888877666632    2466778899999998865 5667889999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhcC------CChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           78 MVALS-AFWTAGTIFEASLAWVVMTR------LNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        78 ~~~~~-~~~~~G~~~~~~l~~~l~~~------~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      +++.+ ..+.+|..++|++++.+.+.      +|||..|.+.++..++. ....++++|+.
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99997 67889999999999988775      57999998887776654 55566678774

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.28  E-value=7.6e-11  Score=94.38  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=96.8

Q ss_pred             hhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhH
Q 015075          267 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  346 (413)
Q Consensus       267 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  346 (413)
                      +..+++..+.+++.||+|||+.+..+.....+..+......+........+...++.....+..+.+..|.+|++.|+++
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            34556788899999999999988776665555444443333333333333333344444556677889999999999999


Q ss_pred             HHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          347 FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       347 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .++.+...+++..++|.+.+.+.+..+....+++.+.+.+++.+..+++.|||
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999988887766665667777777777777777777765

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.27  E-value=2.1e-11  Score=117.16  Aligned_cols=128  Identities=12%  Similarity=0.078  Sum_probs=106.1

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH-
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-   80 (413)
                      ++++++|++.||+|||+.+..+.++.+++.++.++++|.+.+++.+++.|++.+.. +....++.|.+|++.|+...+. 
T Consensus       277 ~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  356 (420)
T PRK09528        277 LIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVG  356 (420)
T ss_pred             HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeeh
Confidence            57789999999999999999999999999899999999999999999999987764 4556788999999999887654 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp  130 (413)
                      ++....+|.++++++.+.+.+..|||..|...++..++. .+.+...++.|
T Consensus       357 ~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        357 FQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            667788999999999999999899999999877666544 34444444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.26  E-value=6.7e-10  Score=102.13  Aligned_cols=336  Identities=16%  Similarity=0.110  Sum_probs=184.1

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc------HH--HHHHHHHHhhhcccchhHHHH-HHHhhccCCCcch
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN------YV--SLVIFRCFVGVGLGGVPVFLA-YFLEFVPVSHRGR   76 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~------~~--~l~~~R~l~G~~~g~~~~~~~-~~~E~~p~~~Rg~   76 (413)
                      +..-|+.|++|-|....++.++.+++..+-..+..      ++  ..+.+..+.+.+.-......+ ...-|+|+++|..
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~  176 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI  176 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence            45578999999999999999999999987766543      23  334444444444332222323 3456999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC------CChHH--HHHHhhHHHHH-HHHHhhcCCCCchHHhhccChHHHHHHHH
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTR------LNWRW--LLAFSSVPSFA-LLLFYGLAPESPRYLCAKARTVDAHRILE  147 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~------~~Wr~--~f~~~~i~~~~-~~~~~~~~pEsp~~l~~~~~~~~a~~~~~  147 (413)
                      ++.+-..+..+|..++.++...+.++      ..|.-  +|+.......+ +....+..+|.|+.               
T Consensus       177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t---------------  241 (480)
T KOG2563|consen  177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT---------------  241 (480)
T ss_pred             hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---------------
Confidence            99999999999998888777766543      34655  34433333322 22222333444431               


Q ss_pred             HHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhc-cchhhhHHHHHHHHHHHHHHHh
Q 015075          148 KMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLF-SRKLIRTTLLLWVLFFANVFSY  226 (413)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  226 (413)
                                |+    ...+...++       .              .-.++.+.++ .+++.    ++...+..+...+
T Consensus       242 ----------Pp----s~s~~~~~~-------~--------------~f~~si~~~~~n~~F~----il~~~ygi~~g~F  282 (480)
T KOG2563|consen  242 ----------PP----SASQAALQD-------A--------------SFPKSIKSCFKNRQFI----ILAICYGIGLGLF  282 (480)
T ss_pred             ----------CC----chhHhhhhc-------C--------------cHHHHHHHHHcCccHH----HHHHHHhhhHHHH
Confidence                      00    000000000       0              0011222222 22222    2233333333333


Q ss_pred             hhHHhhhh-hccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhCh-hHHHHHHHHHHHHH-HHHH
Q 015075          227 YGAVLLTS-KLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIF-LLPL  303 (413)
Q Consensus       227 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~-~~~~  303 (413)
                      ++...... .+..         .+......+.   ...+..+.+++|.++.|.+.||.+. |..++......... +...
T Consensus       283 ~~l~~~l~~~l~~---------sgY~~~~aG~---ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~  350 (480)
T KOG2563|consen  283 NSLSTLLNLALCP---------SGYEGVFAGY---IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLL  350 (480)
T ss_pred             HHHHHHhhhcccc---------ccCCccccch---hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44333322 2211         1111122232   2345556678899999999999754 33333333222222 1111


Q ss_pred             Hh--c-chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc----hhH
Q 015075          304 VF--H-QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH----LRL  376 (413)
Q Consensus       304 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~----~~~  376 (413)
                      ..  . ...++........+++..+-.++..-+..|.-=|..-++..|+.+..|++-+++-+++.+...+..+    ...
T Consensus       351 ~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~  430 (480)
T KOG2563|consen  351 TCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFP  430 (480)
T ss_pred             HhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCcc
Confidence            11  1 1122222223333445555566666777787777788999999999999988888877776665544    233


Q ss_pred             HHHHHHHHHHHHHHHhhcccccccCcchhhh
Q 015075          377 AVILFEVVFVLAIASSLLFPFETMGRELKDT  407 (413)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~  407 (413)
                      .-+.....+.+......++.|+-++++.|++
T Consensus       431 ~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~  461 (480)
T KOG2563|consen  431 ANIFLTVSALLGAILVAFFRPDYRRLRAEAG  461 (480)
T ss_pred             chhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence            3455556666666777777777766666643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.25  E-value=4.8e-11  Score=113.85  Aligned_cols=126  Identities=18%  Similarity=0.170  Sum_probs=107.5

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +|.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+.. +.......|..|+++||+..+++
T Consensus       264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (399)
T PRK05122        264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAY  343 (399)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            57788999999999999999888888888888888889888889999999998764 55566778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPE  128 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pE  128 (413)
                      +....+|..+++++.+.+.+..||++.|++.++..++..+..+.+++
T Consensus       344 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        344 SVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999898888899999999887777665555444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.23  E-value=9.3e-11  Score=111.64  Aligned_cols=125  Identities=17%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++.+++|+++||+|||+.+..+.+...+.......+++.+.+++.|++.+++.|.. +....+..|..|. +||+.++++
T Consensus       267 ~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~  345 (393)
T PRK15011        267 PTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLY  345 (393)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHH
Confidence            46788999999999999887776665555555556778888889999998877654 4555677898875 699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPE  128 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pE  128 (413)
                      +....+|..+++.+++.+.+.+||+..|++.+++.++..+..++.||
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999998899999999888888777777666665

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.23  E-value=7.3e-10  Score=103.55  Aligned_cols=122  Identities=17%  Similarity=0.228  Sum_probs=104.9

Q ss_pred             cchhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC--CcchHH
Q 015075            5 AYSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS--HRGRWM   78 (413)
Q Consensus         5 ~~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~--~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~--~Rg~~~   78 (413)
                      ..+.||++|| .|+|++++++.++..++-++.+..+  +...++++-++.++|.|.. +...+++.|..|++  +|-...
T Consensus        78 ~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF  157 (498)
T COG3104          78 PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF  157 (498)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence            4678999997 5999999999999999999999884  7889999999999999987 88889999999886  366667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcC
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLA  126 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~  126 (413)
                      +++..+.++|++++|.+.+.+.+..||+..|...++-....++.++..
T Consensus       158 t~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         158 TLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             cEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            788888999999999999999999999999998888766555544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.23  E-value=6.3e-10  Score=106.54  Aligned_cols=138  Identities=13%  Similarity=0.021  Sum_probs=97.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...++..++.+..|++.||+|||+.+..+.+...+......+.++.......-+..+++..+..+....+..|.+|++.|
T Consensus        51 ~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  130 (412)
T TIGR02332        51 LFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFR  130 (412)
T ss_pred             HHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHH
Confidence            44455667888999999999999988877766655554444444443333333334444444455666788999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVT------SCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +.+.|+.+....+|..++|.+.+.+.+      ..++...+++.++..++..++.+++.||+..
T Consensus       131 g~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       131 ARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            999999999999999999998887753      2356667777666666655666666677753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.21  E-value=5.6e-10  Score=105.81  Aligned_cols=142  Identities=16%  Similarity=0.180  Sum_probs=101.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....++..++.++.|++.||+|||+.+..+.+...+........++........+...++.....+....+..|.+|++
T Consensus        46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  125 (385)
T TIGR00710        46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE  125 (385)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence            34445566778899999999999999988877666555544444444333333333333333334456677889999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  403 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  403 (413)
                      .|++..|+.+....++..++|.+.+.+.+..+....+++.+++.++..+...+..||++.++
T Consensus       126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (385)
T TIGR00710       126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE  187 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999888877666666777777666666666666667775543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.20  E-value=9.2e-10  Score=102.83  Aligned_cols=138  Identities=17%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....+...++.++.|.++||+|||+.+..+.+...+..+...+..+.+......+..+.+.....+....+..|.+|++
T Consensus        38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~  117 (352)
T PF07690_consen   38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE  117 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence            34455567788999999999999999888877776665333333234333334444444444455667788999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .|+...++.+....+|..++|.+.+.+.+..+....+++.+++.+++.++..++.+|+
T Consensus       118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence            9999999999999999999999988887666666778888777777766433343333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.20  E-value=1.1e-09  Score=106.86  Aligned_cols=134  Identities=12%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...++..++.++.|+++||+|||+.+..+.+...+..+......+........+..+++... ......+.+|.+|++.|
T Consensus        79 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~r  157 (476)
T PLN00028         79 ASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIV  157 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhhe
Confidence            44455677889999999999999988776666555444444433333222222222222222 22334467899999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhh----c-----cchhHHHHHHHHHHHHHHHHhhccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVT----S-----CHLRLAVILFEVVFVLAIASSLLFPFE  398 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~e  398 (413)
                      +.+.|+.+..+++|+.+++.+.+.+..    .     .++...+++.+++.++..+..++++++
T Consensus       158 g~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        158 GTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            999999998888888777666543322    1     245667777777776666666665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=1.5e-09  Score=103.69  Aligned_cols=307  Identities=20%  Similarity=0.238  Sum_probs=178.1

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc---hhHHHHHHHhhccCCCcchHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG---VPVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~---~~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      +-+...|.++||+|||..+....+...+..++..+..  +++++   +.|+.-+.   .....+|+++....++|....+
T Consensus        77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~g  151 (463)
T KOG2816|consen   77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIG  151 (463)
T ss_pred             HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHH
Confidence            4567789999999999999999998888888877777  33333   66664332   2456789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcCCCCC
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLP  158 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~  158 (413)
                      +....+..+..++|.++..+....|--..|.+..+..++. ...+.++|||-+.   +++.++.         .  ++..
T Consensus       152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~~~---------~--~~~~  217 (463)
T KOG2816|consen  152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSDAT---------L--RELT  217 (463)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccccc---------c--cccC
Confidence            9999999999999999999988889999999888877664 5677889998641   1111000         0  0000


Q ss_pred             CCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHH-HHHHHhhhHH-hhhhhc
Q 015075          159 PGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFF-ANVFSYYGAV-LLTSKL  236 (413)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l  236 (413)
                      .+..  ..+    +.                    .   ..++.....+..+..+.+....+ ......-+.. ...   
T Consensus       218 ~~~~--~~~----~~--------------------~---~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~---  265 (463)
T KOG2816|consen  218 PGSL--DSS----HV--------------------A---DAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLL---  265 (463)
T ss_pred             CCcc--cch----hh--------------------h---hhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEE---
Confidence            0000  000    00                    0   00000000111111111111111 1100000000 000   


Q ss_pred             cCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 015075          237 SSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSA-IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL  315 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (413)
                           .+....++++....+..   .......+..+.++.. .+...+|-|+....+++.-.+....+.+.++.+.....
T Consensus       266 -----~yl~~~f~w~~~~~s~~---~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~  337 (463)
T KOG2816|consen  266 -----LYLKAKFGWNKKEFSDL---LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAA  337 (463)
T ss_pred             -----EEEeeecCcCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHH
Confidence                 11111223333222211   1223333444555554 77778888886666666555545445555554432211


Q ss_pred             HHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          316 LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      .. .........+..-+..+-+..++.++...++...+-.++++++|.+.+.+.
T Consensus       338 ~v-~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  338 GV-VVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             HH-HHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            11 112222334455667778888999999999999999999999998877554

>TIGR00895 2A0115 benzoate transport

Probab=99.19  E-value=4.2e-10  Score=107.00  Aligned_cols=138  Identities=17%  Similarity=0.171  Sum_probs=97.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....+...++.++.|+++||+|||+.+..+.+...+........++........+...++.....+....+..|.+|++.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34455667889999999999999998888776665554444444443333333333333344455667889999999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      |+.+.++.+....+|+.++|.+.+.+.+..+....+.+.+++..+..+...++.||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999888877666655666655555555555555566764

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.18  E-value=1e-09  Score=104.97  Aligned_cols=139  Identities=17%  Similarity=0.140  Sum_probs=96.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....++..++.++.|+++||+|||+.+..+.+...+..+......+........+...++.....+....+..|.+|++
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  135 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR  135 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence            34455666788999999999999999988877665554444344444333333333333333344556677899999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      .|+++.++.+....+|+.++|.+...+.+..+....+++.+++.++..+...+..||+.
T Consensus       136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999988766666556666666666655555555555566764

>PRK10054 putative transporter; Provisional

Probab=99.18  E-value=9.2e-10  Score=104.81  Aligned_cols=136  Identities=14%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      +..+...++.++.|+++||+|||+.+..+.+...+....+.+.++.+.................+....+.+|..|++.|
T Consensus        51 ~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  130 (395)
T PRK10054         51 IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSK  130 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHH
Confidence            34455667788999999999999988877766655444444444433222222222222222345567778999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +.+.|+.+...++|..++|.+.+.+.+ .+....+...+++.+++.+...+..||++
T Consensus       131 ~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        131 TKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998887664 45666777766666666555555445543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.17  E-value=1.7e-09  Score=102.94  Aligned_cols=137  Identities=11%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...+...++.++.|.++||+|||+.+..+.+...+..+.....++.+......+...++.....+....+.+|.+|++.|
T Consensus        63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~  142 (394)
T PRK10213         63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence            44556667888999999999999998887777665554444444444333333344444444556677788999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +.+.++......++..++|.+.+.+.+..+....+++.++++++..+......||++
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999988887777777777666666555444444456654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.16  E-value=5.2e-10  Score=106.09  Aligned_cols=140  Identities=15%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.+...+.........+........+..+++.....+....+.+|.+|++
T Consensus        35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  114 (399)
T TIGR00893        35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS  114 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH
Confidence            34455666778899999999999999888777665554444444444333333333444444445566778899999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .|+.+.++.+....+|..++|.+.+.+.+..+....+.+.+++.++..+..++..||++.
T Consensus       115 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       115 ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            999999999999999999999998877777776677777777766666666666666544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.15  E-value=2.5e-10  Score=106.42  Aligned_cols=124  Identities=24%  Similarity=0.351  Sum_probs=111.5

Q ss_pred             ccccchhhHhhhhcCChH-HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHH
Q 015075            2 LLGAYSWGIISDNYGRRK-SFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~-~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      .+|.++++++.||+|||+ .+..+.++..++.+...+.++...+++..++.|++.+.. +...+++.|..|+++|++..+
T Consensus       225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (352)
T cd06174         225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG  304 (352)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHH
Confidence            357788999999999999 999999999999999999999999999999999998875 677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL  125 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~  125 (413)
                      +.+....+|..+++.+.+.+.+..+|++.+++.++..++..+...+
T Consensus       305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999988899999999988887766555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.15  E-value=2.4e-09  Score=102.10  Aligned_cols=138  Identities=19%  Similarity=0.142  Sum_probs=91.8

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      .+..+...++.++.|.++||+|||+.+..+.+...+..+.....++........+..+.+.....+....+..|.+|++.
T Consensus        54 ~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  133 (405)
T TIGR00891        54 SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL  133 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence            34455667789999999999999999887776655544444444443333333333334444455667778899999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      |+.+.++.+....+|.+++|.+.+.+.+..+  ....+++..+..++. +......||++.
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~  193 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAED  193 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChh
Confidence            9999999999999999999988877766544  344444433333333 333344567643

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.15  E-value=1.9e-09  Score=103.19  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=98.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      +..++..++.++.|.++||+|||+.+..+.++..+..+.....++.....+.-+..+++.....+..+.+..|.+|++.|
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33455667888999999999999988887766655544444444443333333333333222334456788899999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +...++.+....++..++|.+.+.+.+..++...+++.+++.+++.+...+..||+++
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999988877776677777877777777776655555678754

>PRK12382 putative transporter; Provisional

Probab=99.15  E-value=2.3e-10  Score=108.92  Aligned_cols=120  Identities=18%  Similarity=0.217  Sum_probs=105.2

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +++++.|++.||+|||+.+..+..+..++.++..++++...+++.+++.|++.+.. +.....+.|..|+++||+..+++
T Consensus       264 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  343 (392)
T PRK12382        264 LMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGY  343 (392)
T ss_pred             HHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56788999999999999999998888888888888899888889999999988764 56667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF  122 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~  122 (413)
                      +....+|..+++.+.+.+.+..||++.|.+.++..++....
T Consensus       344 ~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        344 AAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999899999999888776654433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.14  E-value=2.1e-10  Score=109.66  Aligned_cols=120  Identities=16%  Similarity=0.227  Sum_probs=104.1

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++.+++|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.|.. +...+++.|..|+++||+..+..
T Consensus       273 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  352 (408)
T PRK09874        273 LSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYN  352 (408)
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHH
Confidence            45566789999999999999988888888888888888999999999999988875 66667788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF  122 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~  122 (413)
                      .....+|..++|.+++.+.+..||++.|++.++..++..+.
T Consensus       353 ~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        353 QSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888777665443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.14  E-value=1.8e-09  Score=102.78  Aligned_cols=140  Identities=12%  Similarity=0.052  Sum_probs=97.5

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....+....+.++.|+++||+|||+.+..+.+...+.........+........+....+.....+..+.+..|.+|++.
T Consensus        45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~  124 (392)
T PRK10473         45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR  124 (392)
T ss_pred             HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence            34445566788899999999999998887776655554444433333322222223333333344567788899999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      |+.+.++.+....++..++|.+.+.+.+..++...+++.+++.++..+..++..||++.+
T Consensus       125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            999999999999999999998887766666666667777777666666666666777543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=1.3e-09  Score=106.72  Aligned_cols=139  Identities=10%  Similarity=0.066  Sum_probs=101.3

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....++..++.++.|+++||+|||+.+..+.+...+..+.....++........+..+++.....+....+..|.+|++.
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~  123 (485)
T TIGR00711        44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK  123 (485)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence            34556667788999999999999999888777666555444444444333333444444444455677888999999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      |+.+.++......++..++|.+.+.+.+..++...+++...+.++..+...++.||++.
T Consensus       124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            99999999999999999999998888877776666766666666666666666666544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.12  E-value=3.1e-09  Score=101.64  Aligned_cols=139  Identities=18%  Similarity=0.114  Sum_probs=97.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....++..++.++.|.++||+|||+.+..+.....+........++........+..+.......+..+.+..|.+|++.
T Consensus        55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  134 (406)
T PRK15402         55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence            34555667788899999999999998887776665554444444433322222222222222333556777889999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      |..+.++.+....++..++|.+.+.+.+..+....+++.+++.+++.+..++..||+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999888888889999988877776666677777777777766666666777754

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.10  E-value=2.1e-08  Score=96.15  Aligned_cols=124  Identities=15%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             cchhhHhhhhcC-----ChHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccC--C
Q 015075            5 AYSWGIISDNYG-----RRKSFLGIAMVTSVAGLLSSFSP----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPV--S   72 (413)
Q Consensus         5 ~~~~g~l~Dr~G-----rr~~~~~~~~l~~~~~~~~~~a~----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~--~   72 (413)
                      .+++|.++|-+-     ||+-++++.++..++.+..+..+    +.....++-++..+|.... ..+-+.+.|...+  +
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            467899999773     55556666666655565555544    3555555556666665543 4445677777633  3


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH-HHhhcCCC
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL-LFYGLAPE  128 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~-~~~~~~pE  128 (413)
                      .||...+.......+|.+++..+++.+.+..++|+.|.+.++...+.. ...+..+|
T Consensus       121 ~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  121 SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            478888888889999999999999999999999999988876665543 34444454

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.09  E-value=8.6e-10  Score=104.16  Aligned_cols=125  Identities=15%  Similarity=0.167  Sum_probs=101.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      .+.++.|++.||+|||+.+..+.+...+...+..+.++.+.+++.++++|++.|.. +....+..|..|. +|++.++++
T Consensus       250 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  328 (375)
T TIGR00899       250 PFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLY  328 (375)
T ss_pred             HHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHH
Confidence            35677899999999999988887776666666667788888888999999988764 5566788898875 567999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCC
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPE  128 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pE  128 (413)
                      .....+|..+++.+++.+.+..||+..|++.++..++......+++|
T Consensus       329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            99999999999999999988899999999888877766665555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.09  E-value=5.4e-09  Score=98.11  Aligned_cols=134  Identities=13%  Similarity=0.080  Sum_probs=91.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcc-----hhHHHHHHHHHHHHHhhhhhhhhheeccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-----SAVVTTVLLFGVRMCVTGTITVATIYAPE  336 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  336 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.+...+.........     +.+......+....+.....+....+.+|
T Consensus        40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  119 (365)
T TIGR00900        40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD  119 (365)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344556677888999999999999998877665444333222211     33333333333333333445567788999


Q ss_pred             ccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          337 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       337 ~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      .+|++.|+...|+.+....+|.+++|.+.+.+.+..+....+++..+..+++.+....+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       120 LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999998888776666666666555555554444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.09  E-value=1.8e-09  Score=102.13  Aligned_cols=139  Identities=13%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....+....+.++.|+++||+|||+.+..+.+...+........++........+...++.....+....+..|.+|++.
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  112 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE  112 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34455667788999999999999999888777666555544444443333333333334433344556778899999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      |+.+.++.+....+++.++|.+.+.+.+..+....+++.+++.++..+...+..||++.
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T PRK11102        113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP  171 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99999999999999999999998888776666667777777666666666555667643

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.09  E-value=4.5e-09  Score=103.29  Aligned_cols=118  Identities=21%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....++..++.++.|+++||+|||+.+..+.+...+..+.....++........+..+++..+..+....+..|.+|++.
T Consensus        62 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  141 (496)
T PRK03893         62 SAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL  141 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            34455667788999999999999998887776665555444444443333333333344444455666778899999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHH
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL  380 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~  380 (413)
                      |+.+.++.+....+|+.++|.+.+.+.+..++...+++
T Consensus       142 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~  179 (496)
T PRK03893        142 RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            99999999999999999999998888776666555543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.09  E-value=6e-09  Score=99.12  Aligned_cols=136  Identities=7%  Similarity=-0.005  Sum_probs=96.7

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...+...++.+..|.+.||+|||+.+..+.+...+........++.+...+..+..+.......+....+.+|.+|++.|
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            33444556778889999999999999888776665555444444444333333333333333445566788999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      +.+.|+......++..++|.+.+.+.+..++...+++.++++++..+......||.
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999888777777777778877777766655555545554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.09  E-value=4e-09  Score=101.83  Aligned_cols=137  Identities=13%  Similarity=0.110  Sum_probs=95.2

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      ....+...++.++.|++.||+|||+.+..+.+...+..+.....++........+...++.....+....+.+|.+|++.
T Consensus        65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  144 (434)
T PRK11663         65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE  144 (434)
T ss_pred             HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence            34555667788999999999999998888777766655554444443332222222233333334556778899999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      |+++.|+.+....+|+.++|.+.+.+.+..+....+++.+++.++..+...+..||+
T Consensus       145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999888887777776677666665554434344344443

>PRK10504 putative transporter; Provisional

Probab=99.09  E-value=4.9e-09  Score=102.37  Aligned_cols=136  Identities=13%  Similarity=0.063  Sum_probs=93.5

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhh
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  344 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  344 (413)
                      ..+...++.++.|+++||+|||+.+..+.+...+..+.....++........+..+++.....+....+..|.+|++.|+
T Consensus        54 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  133 (471)
T PRK10504         54 YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM  133 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence            34455678889999999999999887765555444333333333333333333333444444566777889999999999


Q ss_pred             hHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          345 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       345 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      .+.|+.+....++..++|.+.+.+.+..++...+.+......++.+......|+++
T Consensus       134 ~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        134 AAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999988888777666666655555555555555555543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.09  E-value=4.5e-10  Score=105.89  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=98.4

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccH--HHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNY--VSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~--~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      ++|+++.|++.||+|||+.+..+.++..++.++..+.++.  ..+++..++.|++.|.. +....++.|.+|+++||+..
T Consensus       254 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  333 (377)
T TIGR00890       254 GGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANY  333 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHh
Confidence            3678899999999999999999988888888877777653  33456678888877764 45567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHH
Q 015075           79 VALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA  118 (413)
Q Consensus        79 ~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~  118 (413)
                      ++.+....+|..+++.+.+.+.+..||++.|.+.++..++
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            9999999999999999999998889999999887766544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.08  E-value=5.2e-09  Score=100.74  Aligned_cols=119  Identities=20%  Similarity=0.210  Sum_probs=86.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..++...+.++.|+++||+|||+.+..+.+...+........++........+..+++..+..+....+..|.+|++
T Consensus        59 ~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~  138 (426)
T PRK12307         59 ATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH  138 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh
Confidence            33455666778999999999999999998877776655544444444333333333444444445566777889999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHH
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVIL  380 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~  380 (413)
                      .|+.+.++......+|.+++|.+.+.+.+..+....+++
T Consensus       139 ~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        139 LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            999999999998899999999888777776666555554

>PRK03699 putative transporter; Provisional

Probab=99.06  E-value=1.2e-08  Score=97.10  Aligned_cols=129  Identities=17%  Similarity=0.271  Sum_probs=88.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...++..++.++.|++.||+|||+.+..+.+...+........++........+....+.....+....+..|.+|++.|
T Consensus        50 ~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r  129 (394)
T PRK03699         50 FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQR  129 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchH
Confidence            44556677889999999999999988877766655544444444433333333333333333445566778999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHh
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASS  392 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~  392 (413)
                      +.+.++.+....+++.++|.+.+.+.+. .++...+...+++.++..+..
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        130 GSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888999999887776543 455666666666555444433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.05  E-value=1.1e-09  Score=103.43  Aligned_cols=139  Identities=15%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.+...+..+.....++.....+..+...++.....+....+.+|.+|++
T Consensus        36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  115 (379)
T TIGR00881        36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS  115 (379)
T ss_pred             HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence            33455666778899999999999999988887766655554444444333333333333444444566778999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHH-HHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCP-LVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      .|+.+.++.+....+|+.++| .+...+.+..+....+++.+++.++..+...++.||++
T Consensus       116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            999999999999999999999 45454545455556666666666555555555555543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.05  E-value=8.2e-09  Score=100.18  Aligned_cols=139  Identities=16%  Similarity=0.046  Sum_probs=86.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      .....+...++.++.|+++||+|||+.+..+.++..+..+.+.+.    .+........+...++.....+.......|.
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            344555667789999999999999998888777665555444332    1222222223333333333334445567889


Q ss_pred             cccchhhhHHHHHHhhhhhhHh-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          338 YPTSARTTGFGVASSLGKVGGM-VCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +|++.|+++.|+.+....+|+. .+|.....+....++...+++.+++.++..+...++.||+.
T Consensus       149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            9999999999999888888764 45544332322234555666666666665555555556653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.04  E-value=1.4e-08  Score=99.69  Aligned_cols=136  Identities=15%  Similarity=0.106  Sum_probs=94.0

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheeccccc-ccchhh
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY-PTSART  344 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~  344 (413)
                      .++...+.+..|+++||+|||+.+..+.+...+..+.....++.......-...+++..+..+.......+.+ |++.|+
T Consensus        51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3344556788999999999999998877766555444444444443333333333333333344444455555 779999


Q ss_pred             hHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          345 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       345 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .+.|+......+|..++|.+.+.+.+..++.+.+++...++++..+...++.||..+
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999988888777777777666666666666666676543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.03  E-value=9.8e-09  Score=99.00  Aligned_cols=125  Identities=16%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             HhhhhhHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhhhhhhhhheecccccccc--
Q 015075          266 SLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS--  341 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--  341 (413)
                      .....++.+++|+++||+ |||+.++.+.+...+..+.+.... +.......+...........+...++.+|.+|++  
T Consensus        55 ~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~  134 (493)
T PRK15462         55 CSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP  134 (493)
T ss_pred             HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence            344566888999999998 999988877766554433333221 1111111111111111122244457789999986  


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  390 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  390 (413)
                      .|.++.++.++.+++|++++|.+.+.+.+..+.+..+...++..+++.+
T Consensus       135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li  183 (493)
T PRK15462        135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLV  183 (493)
T ss_pred             cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999887777766666655443344333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.02  E-value=1.1e-08  Score=96.91  Aligned_cols=139  Identities=13%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....++..++.++.|++.||+|||+.+..+.+...+..+.....++.+......+...++.....+....+..|.+|++
T Consensus        44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  123 (382)
T PRK10091         44 ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG  123 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence            34556677788999999999999999988887777665555444444443333333333333333344556778999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      .|+.+.++......++..++|.+.+.+.+..+....+.+.+++.++..+..++..||.+
T Consensus       124 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        124 KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999988888999999988887777667777777777766666555555567754

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.01  E-value=1.6e-08  Score=96.31  Aligned_cols=140  Identities=14%  Similarity=0.024  Sum_probs=92.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....+...++.++.|.++||+|||+.+..+.+...+........++........+...++.....+....+..|.+|.+
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  128 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT  128 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence            33455566778899999999999999888776665554444333333332222222222222222344556778899999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .|+.+.++.+....++..++|.+.+.+.+..+....+.+.+++.++..+...++.||++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        129 QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999998888888888999888877776666666666666555554555555677643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.01  E-value=1.9e-08  Score=99.06  Aligned_cols=107  Identities=17%  Similarity=0.181  Sum_probs=76.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcch------hHHHHHHHHHHHHHhhhhhhhhheecc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS------AVVTTVLLFGVRMCVTGTITVATIYAP  335 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (413)
                      .....++..++.++.|+++||+|||+.+..+++...+.........+      ........+..+++..+..+....+.+
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  141 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS  141 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            44455667889999999999999999887766655544333332221      122333444444555556677889999


Q ss_pred             cccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          336 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       336 e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      |.+|++.|+.+.++.+....+|..+++.+...+
T Consensus       142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888888765533

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.01  E-value=1.9e-08  Score=95.93  Aligned_cols=133  Identities=16%  Similarity=0.078  Sum_probs=89.7

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhh
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  345 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  345 (413)
                      .+......++.|.++||+|||+.+..+.+...+..+.+...++.+......+...+......+...++..|.+|++.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34444557888999999999999888777766655555444443333222222222222233445677889999999999


Q ss_pred             HHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          346 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       346 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      +.|+.+...++|..++|.+.+.+. ..+....+++.++..+++.+...+..||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999988776 45555666666555555544444445554

>PRK11043 putative transporter; Provisional

Probab=99.00  E-value=1.6e-08  Score=96.49  Aligned_cols=138  Identities=17%  Similarity=0.157  Sum_probs=93.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.+...+........++........+...++..........+..|.+|++
T Consensus        47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  126 (401)
T PRK11043         47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ  126 (401)
T ss_pred             HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence            33445566778999999999999999988776665554444444333332222222222222223334556778999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .++...+..+....+++.++|.+.+.+.+..+....+++.+++.++..+...+++||.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        127 KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999888999999999988888877776777777666666655555555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.00  E-value=8.8e-09  Score=100.41  Aligned_cols=136  Identities=11%  Similarity=0.052  Sum_probs=95.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ...++..++.++.|++.||+|||+.+..+.+...+..+....  ..+.....+.-+..+++.....+....+.+|.+|++
T Consensus        84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~  163 (465)
T TIGR00894        84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK  163 (465)
T ss_pred             HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence            344566778899999999999999888777665544333221  122222233333333444445566778899999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .|+.+.|+.+....+|.+++|.+.+.+.+.. +....+++.+++.++..+..+++++|.
T Consensus       164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999988887763 666777777777666656566555543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=1.6e-08  Score=95.12  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=73.9

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ....+...++.++.|+++||+|||+.+..+.+...+..+...... +........+..... .+.......+.+|.+|++
T Consensus        44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~  122 (366)
T TIGR00886        44 AVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKK  122 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHh
Confidence            445556677899999999999999998887776666554444433 333222222222222 233445567889999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      .|+.+.++.....++|..+++.+.+.+..
T Consensus       123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886       123 IQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999998888888877777665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=1e-08  Score=96.37  Aligned_cols=136  Identities=13%  Similarity=-0.051  Sum_probs=90.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...++..++.+..|+++||+|||++..................++.......-+...... +.........+|.+|++.|
T Consensus        34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~-~~~~~~~~~~~~~~~~~~r  112 (368)
T TIGR00903        34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ-PFLLNAFAPAASQIREERR  112 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh-HHHHHHHHHHHHHcCHHHH
Confidence            344556778889999999999998765443333222221121123222222222222222 2233344555899999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +++.++.+....+|+.++|.+.+.+.+..++...+++.+++.++..+..++..||..
T Consensus       113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999998888877777777777777777777676776777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.98  E-value=8.6e-10  Score=106.98  Aligned_cols=118  Identities=16%  Similarity=0.275  Sum_probs=92.7

Q ss_pred             cccchhhHhhhhc--CChHHHHH--HHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNY--GRRKSFLG--IAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~--Grr~~~~~--~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      +++++.|+++||.  ++|+....  +.++.+++.++...+++++.+++.+++.|++.+.. +...+++.|..|+++||+.
T Consensus       291 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~  370 (455)
T TIGR00892       291 FARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSA  370 (455)
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhH
Confidence            4566789999973  34433333  33444455566677889999999999999988765 5667888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHhhHHHHHHH
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRL-NWRWLLAFSSVPSFALL  120 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~-~Wr~~f~~~~i~~~~~~  120 (413)
                      .++++....+|..++|.+++.+.+.. +|++.|++.++..++..
T Consensus       371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            99999999999999999999888766 59999998877655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.97  E-value=1.3e-08  Score=98.41  Aligned_cols=139  Identities=14%  Similarity=0.075  Sum_probs=90.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.+...+..+.....    .+........+...++.....+.......|.
T Consensus        67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~  146 (438)
T TIGR00712        67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW  146 (438)
T ss_pred             HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence            344556667789999999999999998877666555544433221    1221122222222233323334455667899


Q ss_pred             cccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +|++.|+++.|+.+....+++.++|.+.+...+. .++...+++.+++.++..+..+++.||+.
T Consensus       147 ~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       147 WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999999999999999998888776654443 34556677777776666655666666653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.97  E-value=2.3e-08  Score=97.41  Aligned_cols=130  Identities=15%  Similarity=0.052  Sum_probs=87.7

Q ss_pred             HHHHhhhhhHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          263 FIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ....+...++.+++|+++|| +|||+.+..+.+...+....+....+.............+.....+....+.+|.+|++
T Consensus        55 ~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~  134 (475)
T TIGR00924        55 GAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERG  134 (475)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence            34445667789999999999 89999988887776665554444333222222222222222223455667788888875


Q ss_pred             ---hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Q 015075          342 ---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  392 (413)
Q Consensus       342 ---~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  392 (413)
                         .|+.+.++.+...++|+.++|.+.+.+.+..+....+...++..+++.+..
T Consensus       135 ~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       135 DMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             CcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence               488899999999999999999999988877676666666555444443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.96  E-value=2.9e-07  Score=85.58  Aligned_cols=126  Identities=15%  Similarity=0.170  Sum_probs=104.2

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHHHHH
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFW   85 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~   85 (413)
                      ++...+.|..|-|++++...+...+...+.-+.++...+-+.-+.-|++.+...+-.+|+--..|+++--++.+......
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~  138 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAAT  138 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999999999999998877777788877788888888898888999


Q ss_pred             HHHHHHHHHHHHHHhc--CCChHHHHHHhhHHHHHHHHHhhcCCCCch
Q 015075           86 TAGTIFEASLAWVVMT--RLNWRWLLAFSSVPSFALLLFYGLAPESPR  131 (413)
Q Consensus        86 ~~G~~~~~~l~~~l~~--~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~  131 (413)
                      .+|..++.+++-.+..  ..+.+.++.+......+.+++.+++|..++
T Consensus       139 l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  139 LVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999988888877654  556777777766555555666677776554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.95  E-value=8e-09  Score=100.70  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHH--HHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGL--LSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~--~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      ++|.+++|+++||+|||+.+.....+..++..  .....++...+.+.+++.|+...+. ........|..|+++||++.
T Consensus       308 ~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~  387 (467)
T PRK09556        308 LVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVAN  387 (467)
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHH
Confidence            46889999999999999887665444443332  2234456777778899888754332 23335667999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHhc------------CCChHHHHHHhhHHHHHHH
Q 015075           79 VALSAFWTA-GTIFEASLAWVVMT------------RLNWRWLLAFSSVPSFALL  120 (413)
Q Consensus        79 ~~~~~~~~~-G~~~~~~l~~~l~~------------~~~Wr~~f~~~~i~~~~~~  120 (413)
                      ++.+....+ |..++|.+.+.+.+            ..||+..|++..+..++..
T Consensus       388 gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~  442 (467)
T PRK09556        388 GIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCI  442 (467)
T ss_pred             HHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHH
Confidence            999888776 77889988888887            5689999987655554433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.94  E-value=6.7e-09  Score=98.45  Aligned_cols=121  Identities=20%  Similarity=0.209  Sum_probs=94.6

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|+++.|++.||+|||+++..+..+..++.+...  + ........++.|++.+. .|...+++.|..|+++++...+.
T Consensus       249 ~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  325 (381)
T PRK03633        249 ILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQA  325 (381)
T ss_pred             HHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHH
Confidence            35788899999999999998888777776655433  2 23445577788876554 46777888899999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL  125 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~  125 (413)
                      +...+++|..++|.+++.+.++.+|++.|.+.+...++.....++
T Consensus       326 ~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        326 LLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999999999999999877776655444433

>TIGR00898 2A0119 cation transport protein

Probab=98.94  E-value=1.5e-08  Score=99.93  Aligned_cols=134  Identities=20%  Similarity=0.175  Sum_probs=95.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..++.+++.++.|+++||+|||+.+..+.++..+..+...+.++.....+..+..+++..+..+....+..|.+|++
T Consensus       133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~  212 (505)
T TIGR00898       133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK  212 (505)
T ss_pred             HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChh
Confidence            34555667889999999999999999988877776665555555555444444444444555555677889999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .|+.+.++......+|.+++|.+...+.+   +...+++.++..++..+.. ++.||+
T Consensus       213 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       213 QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            99999999988778888888877654433   4455666666666555555 456775

>PRK09952 shikimate transporter; Provisional

Probab=98.93  E-value=1.2e-08  Score=98.53  Aligned_cols=128  Identities=14%  Similarity=0.129  Sum_probs=90.4

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh---c-ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF---S-PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~---a-~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++.+++|+++||+|||+++..+.++..++.+....   . ++...+++.-++.|++.+.. +...+++.|.+|++.|+..
T Consensus       301 i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg  380 (438)
T PRK09952        301 LTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSG  380 (438)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHH
Confidence            45668899999999999988776665554432222   2 23444455667777777654 5567888999999999988


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhcC--CChHHHHHHhhHHHHHHHHHhhcCCCCc
Q 015075           78 MVAL-SAFWTAGTIFEASLAWVVMTR--LNWRWLLAFSSVPSFALLLFYGLAPESP  130 (413)
Q Consensus        78 ~~~~-~~~~~~G~~~~~~l~~~l~~~--~~Wr~~f~~~~i~~~~~~~~~~~~pEsp  130 (413)
                      .++. ..+..+|..++|.+.+.+.+.  .+|+..+.+..+..++..+..+.++|+.
T Consensus       381 ~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        381 AGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            8874 445568888899888887663  3588888877776666655555666643

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.92  E-value=2.3e-08  Score=97.79  Aligned_cols=138  Identities=18%  Similarity=0.100  Sum_probs=89.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc---------chh---HHHHHHHHHHHHHhhhhhhh
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH---------QSA---VVTTVLLFGVRMCVTGTITV  329 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~  329 (413)
                      .....++..++.++.|+++||+|||+++..+.++..+..+.....         .+.   ....+.-+..+++..+..+.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            344556677899999999999999999888766654433322211         111   11122333344455556677


Q ss_pred             hheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          330 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       330 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      ...+.+|.+|++.|+.+.++......+|..+++.+...+.        +..++...+++.++..++..+. .++.||+.
T Consensus       141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            8889999999999999999998888888888876544332        2234555666555555554444 44567764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.92  E-value=1.5e-08  Score=100.31  Aligned_cols=136  Identities=19%  Similarity=0.214  Sum_probs=106.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..++.++|+++.|.++||+|||+++..++++..++.+...+..+.....++-+..+++..+...+.+.+..|+++++
T Consensus       124 ~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~  203 (521)
T KOG0255|consen  124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK  203 (521)
T ss_pred             HHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence            34455667889999999999999999999999888887777677777776677778888888888889999999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .|+.+..+ ..+...++...|....++..  ++...++...+..++..+. .+++||.++
T Consensus       204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~r  259 (521)
T KOG0255|consen  204 QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPR  259 (521)
T ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChH
Confidence            99999999 88888888888888887766  3444455555555544333 666778755

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.92  E-value=2.3e-08  Score=97.47  Aligned_cols=138  Identities=20%  Similarity=0.139  Sum_probs=90.0

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh-cc--hhHHHHHHHHHHHHHhhhhhhhhheeccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-HQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIY  338 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  338 (413)
                      ..+..++..++.++.|+++||+|||+.+..+.+...+....... ..  +........+..+++.....+....+..|.+
T Consensus        77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~  156 (481)
T TIGR00879        77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA  156 (481)
T ss_pred             HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence            44555667788999999999999999888766655444333322 11  1112223333333444445566778899999


Q ss_pred             ccchhhhHHHHHHhhhhhhHhHHHHHH---HHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          339 PTSARTTGFGVASSLGKVGGMVCPLVA---VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       339 p~~~r~~~~g~~~~~~~~~~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      |++.|+.+.++.+....+|.+++|.+.   ..+.+..++...+++..+..++. +...++.||+.
T Consensus       157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~  220 (481)
T TIGR00879       157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP  220 (481)
T ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence            999999999999999999999999887   43334445555666544444444 33444556763

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=7.2e-08  Score=89.15  Aligned_cols=137  Identities=12%  Similarity=0.037  Sum_probs=109.5

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheeccccccc
Q 015075          261 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  340 (413)
Q Consensus       261 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  340 (413)
                      ...+.++...++.++...+.||+.||++++..+....+..+...+..+.......-+...+.-...+++...+..++.|+
T Consensus        53 lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp  132 (394)
T COG2814          53 LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP  132 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            34455666677889999999999999998876666655555545555544444445555556666778888999999999


Q ss_pred             chhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Q 015075          341 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  397 (413)
Q Consensus       341 ~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (413)
                      +.|+.+.++.+.-..++.+++..+..++-+..++..+|+..+++++++.+..+..+|
T Consensus       133 ~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999888998888888888888889999999999999999888888887

>PRK15075 citrate-proton symporter; Provisional

Probab=98.92  E-value=6.3e-08  Score=93.50  Aligned_cols=99  Identities=14%  Similarity=0.127  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHH--------HHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          270 LPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVV--------TTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       270 ~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .+|.++.|++.||+|||+.+..+.+...+......+.++...        ..+.-+..+++.....+....+.+|.+|++
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~  149 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG  149 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence            467889999999999999998877766555554444333221        112222222222233445567899999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      .|+...++.+...+++..+++.+.+.+
T Consensus       150 ~rg~~~~~~~~~~~~g~~~g~~~g~~l  176 (434)
T PRK15075        150 RKGFYTSWQSASQQVAVVFAALLGYLL  176 (434)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888877777665543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=4.8e-09  Score=94.35  Aligned_cols=105  Identities=14%  Similarity=0.194  Sum_probs=79.3

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhh
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  344 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  344 (413)
                      .++.+.+.....|.++||+|||+++.+++++..++........+-...+..-+.. ....+-.++..++.+|+++++.|+
T Consensus        77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~-Gi~kgnl~v~rAiisdV~sek~r~  155 (451)
T KOG2615|consen   77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLG-GIFKGNLSVIRAIISDVVSEKYRP  155 (451)
T ss_pred             HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhccCchHHHHHHHHhhcChhhcc
Confidence            3456778889999999999999999998888877665544433321111111222 223345577889999999999999


Q ss_pred             hHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          345 TGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       345 ~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      .+++..+....+|-+++|.+.+++..
T Consensus       156 l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  156 LGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999998866

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.91  E-value=2.1e-08  Score=94.82  Aligned_cols=98  Identities=22%  Similarity=0.375  Sum_probs=80.7

Q ss_pred             ccccchhhHhhhhcCC-hHHHHHHHHHHHHHHHHH-h--h-cc-cHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcc
Q 015075            2 LLGAYSWGIISDNYGR-RKSFLGIAMVTSVAGLLS-S--F-SP-NYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRG   75 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Gr-r~~~~~~~~l~~~~~~~~-~--~-a~-~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg   75 (413)
                      .++++++|+-..|.|. |+.++.+.++..++.++- +  . .+ .-+.++++|++.|+|.|.....-+|++.-..+++|.
T Consensus        85 ~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~  164 (488)
T KOG2325|consen   85 AIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRP  164 (488)
T ss_pred             HhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchH
Confidence            3678889999999996 666778888888887765 2  2 23 467889999999999988778889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 015075           76 RWMVALSAFWTAGTIFEASLAWVV   99 (413)
Q Consensus        76 ~~~~~~~~~~~~G~~~~~~l~~~l   99 (413)
                      ++.+....+..+|.++||.+...+
T Consensus       165 rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  165 RAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHhhhHHHHHHHHhHHHHHHH
Confidence            999999888888888888776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.90  E-value=7.8e-08  Score=91.52  Aligned_cols=132  Identities=12%  Similarity=0.017  Sum_probs=87.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...+......++.|.++||+|||+++..+.+...+..+......+.   ....+..+.+.....+...++.+|++|++.|
T Consensus        46 ~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~  122 (393)
T PRK11195         46 FFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKL  122 (393)
T ss_pred             HHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3444556678899999999999999888776654433332222222   2222233344445567778899999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +.+.|+......++..++|.+.+.+.+.. ...++.+...+.+++.+ ..+..||.+
T Consensus       123 ~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~~~  177 (393)
T PRK11195        123 VKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL-FNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence            99999999999999999999998887743 33333333333333333 334456654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.89  E-value=1.3e-08  Score=96.44  Aligned_cols=118  Identities=9%  Similarity=-0.008  Sum_probs=100.2

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++.++.+.+.||+|+|+.+..+.+...+..++.++++|.+.+++.++++|++.|.. +....|+.+. |+++|++.++++
T Consensus       255 ~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~  333 (382)
T TIGR00902       255 IIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALY  333 (382)
T ss_pred             HHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999875 6677888887 999999999998


Q ss_pred             H-HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH
Q 015075           82 S-AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF  122 (413)
Q Consensus        82 ~-~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~  122 (413)
                      + ..+.+|..+++.+++.+.++.|+ ..|+..+..+++..++
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6 57789999999999999999997 4455555555544443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.89  E-value=2.1e-07  Score=88.87  Aligned_cols=137  Identities=14%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHhhhhhhhhheeccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH-----QSAVVTTVLLFGVRMCVTGTITVATIYAPE  336 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  336 (413)
                      ..+..+...++.+..|++.||+|.|+++..+.+...+..+...+.     ++......+.+...+. .+.++.....+++
T Consensus        76 ~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~  154 (462)
T PRK15034         76 TALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISF  154 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHH
Confidence            334455555677788999999999988877776665544444332     2322222222222232 3345667778899


Q ss_pred             ccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh-----hc-------------cchhHHHHHHHHHHHHHHHHhhccccc
Q 015075          337 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV-----TS-------------CHLRLAVILFEVVFVLAIASSLLFPFE  398 (413)
Q Consensus       337 ~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~e  398 (413)
                      .+|++.|+++.|+....+++|..+++.+.+.+.     +.             .+...+.+++..+.++..+..+++.++
T Consensus       155 wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        155 FFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999998888888776665554332     11             123345567777776666666666555


Q ss_pred             c
Q 015075          399 T  399 (413)
Q Consensus       399 t  399 (413)
                      .
T Consensus       235 ~  235 (462)
T PRK15034        235 I  235 (462)
T ss_pred             c
Confidence            4

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.89  E-value=7.5e-08  Score=92.92  Aligned_cols=137  Identities=21%  Similarity=0.095  Sum_probs=85.5

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchh--------HHHHHHHHHHHHHhhhhhhhhheecc
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSA--------VVTTVLLFGVRMCVTGTITVATIYAP  335 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (413)
                      ...++..+|.++.|+++||+|||+.+..+.+...+..+...+.++.        .....+-+..+++..+..+...++.+
T Consensus        71 ~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  150 (432)
T PRK10406         71 AGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS  150 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Confidence            3344455889999999999999999888777766555544432221        11223333444444455677888999


Q ss_pred             cccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh--------hccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          336 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV--------TSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       336 e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      |.+|++.|+...++.+.....|.++++.+...+.        ...++...+++.++.+++. ++.....||++.
T Consensus       151 e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~  223 (432)
T PRK10406        151 EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ  223 (432)
T ss_pred             HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence            9999999999888876665666666665433221        1345556666555544443 333344567643

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.5e-08  Score=91.39  Aligned_cols=140  Identities=14%  Similarity=0.102  Sum_probs=109.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccc
Q 015075          260 VDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  339 (413)
Q Consensus       260 ~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  339 (413)
                      .......+..-++-.+.|.++||.+.|..+..+++++++..+.+.+.++.....++...-..+-...++.+......-+|
T Consensus        68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs  147 (448)
T COG2271          68 ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFS  147 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC
Confidence            33445556667789999999999999999999999999988888777655555555555555555566777888889999


Q ss_pred             cchhhhHHHHHHhhhhhhHhHHHHHH--HHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          340 TSARTTGFGVASSLGKVGGMVCPLVA--VGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       340 ~~~r~~~~g~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      ++.||+..++=|..-++|+.+.|.+.  +.+..+.+....|+.=++++++..++.+++.+||
T Consensus       148 r~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         148 RKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             ccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999888  7666666667777777777777777777665444

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.86  E-value=8.6e-09  Score=98.98  Aligned_cols=129  Identities=16%  Similarity=0.010  Sum_probs=106.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|+++.+++.||.++|+.+..+.++.+++.++.++.++...+.++.++.|++.+.. +...+++.|..|++.||+.+++
T Consensus       273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  352 (417)
T PRK10489        273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGL  352 (417)
T ss_pred             HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence            357788899999988888888888888888888888898888888999999887654 4556788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHH-HHHHhhcCCCCc
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFA-LLLFYGLAPESP  130 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~-~~~~~~~~pEsp  130 (413)
                      +.....+|..+++.+.+.+.+..|++..+++.+...++ ..+.....||.+
T Consensus       353 ~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        353 WTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999989999988777666544 355555566654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.84  E-value=6.7e-06  Score=75.86  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             chhhHhhhhcC-----ChHHHHHHHH-HHHHHHHHHhhc-----c--------cH-H--HHHHHHHHhhhcccch-hHHH
Q 015075            6 YSWGIISDNYG-----RRKSFLGIAM-VTSVAGLLSSFS-----P--------NY-V--SLVIFRCFVGVGLGGV-PVFL   62 (413)
Q Consensus         6 ~~~g~l~Dr~G-----rr~~~~~~~~-l~~~~~~~~~~a-----~--------~~-~--~l~~~R~l~G~~~g~~-~~~~   62 (413)
                      ..+|+.+|+.+     ||..++.... +...+..+..++     .        .+ +  .....-.+.|+|.+.. ....
T Consensus        32 ~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~l  111 (403)
T PF03209_consen   32 VWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFL  111 (403)
T ss_pred             HHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHH
Confidence            46899999999     8887655443 333333333221     1        22 2  2333445677777654 3455


Q ss_pred             HHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 015075           63 AYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWR  106 (413)
Q Consensus        63 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr  106 (413)
                      ++++|..|+++|+++.++...+.-+|.++++.+.+.+.+.+.-.
T Consensus       112 ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen  112 ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            78999999999999999999999999999999998887766533

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.84  E-value=1.2e-07  Score=92.65  Aligned_cols=112  Identities=12%  Similarity=0.051  Sum_probs=76.5

Q ss_pred             hhHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHhhhhhhhhheecccccccc--hhhh
Q 015075          270 LPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS--ARTT  345 (413)
Q Consensus       270 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~  345 (413)
                      ....+++|+++|| +|||+++..+.+...+..+......+ .............+.....+....+..|.+|++  .|+.
T Consensus        64 ~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~  143 (489)
T PRK10207         64 YGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDG  143 (489)
T ss_pred             HHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhc
Confidence            3345689999999 99999998887766554444443322 111112222222333334455677889999887  4577


Q ss_pred             HHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHH
Q 015075          346 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILF  381 (413)
Q Consensus       346 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~  381 (413)
                      +.++.+...++|+.++|.+.+++.+..+++..|++.
T Consensus       144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~  179 (489)
T PRK10207        144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC  179 (489)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            899999999999999999999888877766666554

>TIGR00897 2A0118 polyol permease family

Probab=98.82  E-value=1.4e-07  Score=90.12  Aligned_cols=113  Identities=7%  Similarity=-0.013  Sum_probs=72.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---Hhc-chhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFH-QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      .....+...++.++.|.+.||+|||+.+..+.+...+.....   ... .+.............+..........+..|.
T Consensus        54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~  133 (402)
T TIGR00897        54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN  133 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence            345556677889999999999999998887766655443322   111 2222222222222222222223344566788


Q ss_pred             cccchhhhHHHHHHhhhhhhH-hHHHHHHHHHhhccch
Q 015075          338 YPTSARTTGFGVASSLGKVGG-MVCPLVAVGLVTSCHL  374 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~-~~~p~~~~~l~~~~~~  374 (413)
                      +|++.|+.+.|+.+....+|. ..+|.+.+.+.+..+.
T Consensus       134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~  171 (402)
T TIGR00897       134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE  171 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence            999999999999999988885 5788877777665553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.81  E-value=2.3e-07  Score=90.62  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=90.3

Q ss_pred             hhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH---h--cchhHHHHHHHHHHHHHhhhhhhhhheecccccccch
Q 015075          268 AELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---F--HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSA  342 (413)
Q Consensus       268 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  342 (413)
                      -.+.-++++|.++||+.||+.++.+-+...+....+.   .  ..+.+....+.+....+.....+...++.+|+.|++.
T Consensus        57 P~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   57 PILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            3344677899999999999998876655433222221   1  1233333344444444444445667889999999999


Q ss_pred             hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcc
Q 015075          343 RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  403 (413)
Q Consensus       343 r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  403 (413)
                      -..++++.....++..+++|.+.|.++...+....+.+-++..+++.+......++.+.++
T Consensus       137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~  197 (524)
T PF05977_consen  137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSS  197 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            9999999999999999999999998887776666665555555555444444444443333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.76  E-value=3e-08  Score=94.01  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=85.5

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHH--HHHhh--cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAG--LLSSF--SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~--~~~~~--a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      +++++.|+++||+|||+.+.....+..+..  .+..+  .++.+.++...++.|++.+.. +...+++.|.+|+++|++.
T Consensus       270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~  349 (394)
T TIGR00883       270 ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG  349 (394)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence            567789999999999998775554444333  22222  256777777888888877654 6677889999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHhhHH
Q 015075           78 MVA-LSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVP  115 (413)
Q Consensus        78 ~~~-~~~~~~~G~~~~~~l~~~l~~~~~-Wr~~f~~~~i~  115 (413)
                      .++ .+....+|..++|.+++.+.++.| |++.++.....
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            887 456677899899999999988888 98877665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.74  E-value=6.9e-08  Score=92.06  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH-
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-   80 (413)
                      ++.+..|++.||+|||+.+..+.++.++...+.+.++|.+.+++.++++|++.+.. .....+..|..|++.|+...+. 
T Consensus       269 ~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~  348 (396)
T TIGR00882       269 LIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIG  348 (396)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHH
Confidence            34577899999999999999999988888888788899999999999999886543 3445667788888888887665 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL  121 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~  121 (413)
                      ++....+|..+++.+++.+.+..||+..|.+.++..++..+
T Consensus       349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            67888999999999999999989999999988777665543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=3.7e-08  Score=89.28  Aligned_cols=142  Identities=18%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .-...+.++....+.|.+.||+|+|..++.+++......+.+.+..+.....+.-...............++.++.||.+
T Consensus       112 FaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d  191 (464)
T KOG3764|consen  112 FASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPED  191 (464)
T ss_pred             HHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc
Confidence            34456677778889999999999999999998888777666666555443222222333333333445566788899887


Q ss_pred             h-hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcc
Q 015075          342 A-RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE  403 (413)
Q Consensus       342 ~-r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  403 (413)
                      . |+.++|+.-.+-.+|-.++|.+.+.+.+..+++.+|+++++++++.....++..+.++..+
T Consensus       192 ~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  192 NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence            6 6999999999999999999999999999999999999999999988888887776665554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.73  E-value=6.3e-07  Score=87.94  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=73.7

Q ss_pred             HHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHhhhhhhhhheecccccccc--hhhhHHH
Q 015075          273 LILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQS-AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS--ARTTGFG  348 (413)
Q Consensus       273 ~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g  348 (413)
                      .+++|+++|| +|||+.+..+.+...+....+....+ .............+.....+....+..|.+|++  .|..+.+
T Consensus        74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            4578999999 59999888877666544443333322 221112122222222223345557788999864  3456788


Q ss_pred             HHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 015075          349 VASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVL  387 (413)
Q Consensus       349 ~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  387 (413)
                      +.+...++|+.++|.+.+++.+..++...+.+..+..++
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            889999999999999999888877766666655443333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.72  E-value=1.7e-07  Score=90.50  Aligned_cols=127  Identities=15%  Similarity=0.248  Sum_probs=104.4

Q ss_pred             ccccchhhHhhhhcCCh--HHHHHHHHHHHHHHHHHhh--------cccHHHHHHHHHHhhhcccch-hHHHHHHHhhcc
Q 015075            2 LLGAYSWGIISDNYGRR--KSFLGIAMVTSVAGLLSSF--------SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP   70 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr--~~~~~~~~l~~~~~~~~~~--------a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p   70 (413)
                      ++|++++|++.||+|.|  +++..+++++.+..+.-.+        .++-+.+.+.=++.|+..|+. +..-++.+|..|
T Consensus       331 ~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP  410 (477)
T PF11700_consen  331 IIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIP  410 (477)
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence            47899999999999999  8988888888665555444        567778888999999999986 677799999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHhhHHHHHHHHHhhcCCC
Q 015075           71 VSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFALLLFYGLAPE  128 (413)
Q Consensus        71 ~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-Wr~~f~~~~i~~~~~~~~~~~~pE  128 (413)
                      +++.+...+++....-....+||.+.+.+.+..| =|+-+....+..++.+.+++++++
T Consensus       411 ~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  411 PGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999998877665 777777666665555555555543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.71  E-value=1.2e-07  Score=91.69  Aligned_cols=104  Identities=17%  Similarity=0.267  Sum_probs=84.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccch-hHHHHHHHhhcc-------CC
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-------VS   72 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-------~~   72 (413)
                      +++++++++++||+|||+.+..+.++..++.++..+.+ +...+++..++.|++.+.. +...++++|..|       ++
T Consensus       271 ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (437)
T TIGR00792       271 LIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVR  350 (437)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcc
Confidence            36778899999999999999999888888777766653 5667778888889988764 555677777654       56


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNW  105 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~W  105 (413)
                      ++|...++.+....+|..+++.+.+.+.+..||
T Consensus       351 ~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       351 AEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            679999999999999999999999988766665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.71  E-value=3.5e-07  Score=87.07  Aligned_cols=124  Identities=9%  Similarity=0.000  Sum_probs=84.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      ...++...+.++.|+++||+|||+++..+..+..+..+...+.++.......-+..+++.....+....+..|.+| +.|
T Consensus        52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~  130 (393)
T PRK09705         52 LPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRT  130 (393)
T ss_pred             HHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccc
Confidence            3345566788899999999999999999888887776666555554433333333333333334445567788887 679


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHH
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLA  388 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~  388 (413)
                      +.+.|+.......|+.+++.+.+.+.+.. ++...+.++.+..++.
T Consensus       131 ~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        131 PLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999888888888888887776654 4445555554444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1e-08  Score=94.70  Aligned_cols=147  Identities=14%  Similarity=0.024  Sum_probs=100.2

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....+...+...++|++.||+.||.++..+..+=.+..+.-.+...-+...++-...+..-.+..+++..+.+|++|..
T Consensus        74 ~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~  153 (493)
T KOG1330|consen   74 QTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD  153 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcch
Confidence            33445556678899999999999999887665544443333333333333333333333444556678889999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHhhcccccccCcchhhhh
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMGRELKDTV  408 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~  408 (413)
                      .|++..++.|.....|+.++-.+..++-+..+ +..++..-+++.++..++..++.+|+..+..+|..
T Consensus       154 ~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~  221 (493)
T KOG1330|consen  154 KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD  221 (493)
T ss_pred             hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence            99999999999999888777555444444333 45677777888888878888787787765444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.3e-06  Score=80.34  Aligned_cols=139  Identities=19%  Similarity=0.212  Sum_probs=96.8

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHh-hhhhhhhheecc
Q 015075          259 YVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH--QSAVVTTVLLFGVRMCV-TGTITVATIYAP  335 (413)
Q Consensus       259 ~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  335 (413)
                      .....+..+.+.+--+..|++.||+|-|+....++++..+-.+.+.+.  +... ...+.+...... .+.+.+...+.+
T Consensus        52 ~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~-~~ll~~gll~G~~GasFav~m~~~s  130 (417)
T COG2223          52 GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST-WQLLVIGLLLGLAGASFAVGMPNAS  130 (417)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch-HHHHHHHHHHhcccceehccccccc
Confidence            344555666666778899999999999988877777655544433332  2211 111222222222 234567788999


Q ss_pred             cccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          336 EIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH---LRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       336 e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      +.||++.++++.|+.- .||+|..+...+.+.+....+   .+.+..++.+..+++.+..++...|.
T Consensus       131 ~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         131 FFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             ccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999 999999998888887777766   66777888888887777777664433

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.68  E-value=1.7e-07  Score=91.71  Aligned_cols=128  Identities=18%  Similarity=0.238  Sum_probs=93.8

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHH---Hhhc-ccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLL---SSFS-PNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~---~~~a-~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~   76 (413)
                      ++|.+++|+++||+|||+.+....++..++.++   .+.+ ++...+.+.-+++.+..|. .+...++..+..|++.+++
T Consensus       273 iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t  352 (491)
T PRK11010        273 IVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSAT  352 (491)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence            468889999999999998877666554443322   2333 4555555555665554443 2445678889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPES  129 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEs  129 (413)
                      ..++.+....+|..+++++++.+.+..||+..|.+..+..++..+....++++
T Consensus       353 ~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        353 QFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999888899999888999999988877776655555444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.66  E-value=9e-07  Score=96.02  Aligned_cols=134  Identities=13%  Similarity=0.013  Sum_probs=85.5

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHH---HHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVS---ACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..++..++.|.++||+|||+++......   ............+.+..+++.+..+.+.....+...++.+|++|++
T Consensus        61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~  140 (1140)
T PRK06814         61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD  140 (1140)
T ss_pred             HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence            3444566788899999999999875331111   1111111112233444444444444555555677888999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .|+.++|+.++...+|.+++|.+.+.+.+..+....++...++.+++.++.+ ..||+
T Consensus       141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  197 (1140)
T PRK06814        141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASL-FIPKT  197 (1140)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHh-hCCCC
Confidence            9999999999999999999999999888766655444222333333333333 34454

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.65  E-value=2.5e-07  Score=87.80  Aligned_cols=115  Identities=12%  Similarity=-0.013  Sum_probs=92.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++.++.|++.||+|+|+.+..+.+...++.++.+++++.+.+++..++.|++.+.. +....++.+. +++++++..+.+
T Consensus       255 ~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  333 (382)
T PRK11128        255 LIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALY  333 (382)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHH
Confidence            34567889999999999999999998888888889999999999999999998864 5566777775 677788888887


Q ss_pred             H-HHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHH
Q 015075           82 S-AFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFAL  119 (413)
Q Consensus        82 ~-~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~  119 (413)
                      . .....|..+++.+++.+.+.+|+. .++..+...++.
T Consensus       334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            5 566788899999999999988984 555555544443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.65  E-value=1e-06  Score=86.34  Aligned_cols=126  Identities=16%  Similarity=0.146  Sum_probs=76.8

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      .-.+...++..+.|.++|.+|||..++.+.+...+-.+.....++.............. .+...+.....+|+.|.+.|
T Consensus        86 ~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~Gvg-aG~~~~~~~~isEl~p~k~R  164 (599)
T PF06609_consen   86 AWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVG-AGVQELAALAISELVPNKWR  164 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcccchh
Confidence            34455666788899999999999998887776655444433333332222222222222 23334455568999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIA  390 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~  390 (413)
                      ..+.++.....-.....+|.+...+....++.+.++++.+...++.+
T Consensus       165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            98887776544444446666665444444566666666655555433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=98.63  E-value=8.1e-07  Score=83.34  Aligned_cols=129  Identities=17%  Similarity=0.139  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHh-----ChhHHHH-HHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          273 LILSAIIVDKI-----GRKLSMV-LMFVSACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       273 ~~~~g~l~dr~-----grr~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      .++.|.++||+     |||+.++ .+.+...+....+.+..   +.+......+....+.........++.+|.+|++.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67899999997     8888754 44444444333333321   221222222222233333334567788999999999


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhccc--------hhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSCH--------LRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +.+.|+......+|.+++|.+.+.+....+        +...+++.+++.+++.+..++..||++.
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~  183 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQE  183 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence            999999999889999999988877766655        5566777777666666555555677643

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=2e-06  Score=82.20  Aligned_cols=108  Identities=19%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHhhhhhhhhheeccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIY  338 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  338 (413)
                      .....++..++.+..|++.||+|||+.+..+.+...+....+..   .++........+..........+....+..++.
T Consensus        44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~  123 (410)
T TIGR00885        44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG  123 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence            34555566778899999999999999988877766554433221   122222223333333333334445556777889


Q ss_pred             ccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          339 PTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       339 p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      |++.|+...++.+.+..+|+.++|.+.+.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=1.5e-05  Score=75.61  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=76.9

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +.+++.+.+.|+.|+|+.+.++...+....+..-+- |-+.+++.-.+.|+|.+.. .....|++|..+++.+.+-.++.
T Consensus        65 v~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~  143 (461)
T KOG3098|consen   65 VSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIF  143 (461)
T ss_pred             HHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHH
Confidence            567788999999999999999999888777655444 4566889999999998864 45568999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 015075           82 SAFWTAGTIFEASLAWV   98 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~   98 (413)
                      ......+.++|+..-..
T Consensus       144 Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  144 WAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHHHHHHHHhhhHhhee
Confidence            88888888777655443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.60  E-value=1.6e-06  Score=94.17  Aligned_cols=109  Identities=12%  Similarity=0.001  Sum_probs=76.1

Q ss_pred             HHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHhhhhhhhhheecccccc
Q 015075          263 FIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLV---FHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  339 (413)
Q Consensus       263 ~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  339 (413)
                      .+..+..+++.++.|+++||+|||++++.+.++..+..+...   ...+.+...+..++.+++.....+...++.+|++|
T Consensus        54 ~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  133 (1146)
T PRK08633         54 ALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVG  133 (1146)
T ss_pred             HHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcC
Confidence            344445667888999999999999988876654433322211   12233333333333334444445667789999999


Q ss_pred             cchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          340 TSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       340 ~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      ++.|+.+.|+......+|.+++|.+.+.+.+.
T Consensus       134 ~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        134 KENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999988877654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.58  E-value=9.7e-09  Score=100.57  Aligned_cols=127  Identities=12%  Similarity=0.121  Sum_probs=2.9

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc-------------------------------------------
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP-------------------------------------------   39 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~-------------------------------------------   39 (413)
                      +..++..++++|..|-+.+-.+.++.++++++.++=+                                           
T Consensus        53 ~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~  132 (539)
T PF03137_consen   53 VVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSS  132 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCcccccccc
Confidence            3445667888887777788888888888888775410                                           


Q ss_pred             -------cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Q 015075           40 -------NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRL--------  103 (413)
Q Consensus        40 -------~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~--------  103 (413)
                             -+..++++.++.|+|.... +.+.+|+=|..++++-+...|+......+|+++|-++++.....+        
T Consensus       133 ~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~  212 (539)
T PF03137_consen  133 SSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPP  212 (539)
T ss_dssp             -------------------SSS----------------------------------------------------------
T ss_pred             ccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccc
Confidence                   0345788999999998765 778899999999999999999999999999998888877653210        


Q ss_pred             --------------ChHHHHHHhhHHHHHHHHHhhcCCCC
Q 015075          104 --------------NWRWLLAFSSVPSFALLLFYGLAPES  129 (413)
Q Consensus       104 --------------~Wr~~f~~~~i~~~~~~~~~~~~pEs  129 (413)
                                    .|..=|++.+...++..+.++..|++
T Consensus       213 ~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  213 DGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             ----------------------------------------
T ss_pred             cCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence                          26666666666666665556666654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.56  E-value=6.6e-07  Score=81.30  Aligned_cols=115  Identities=27%  Similarity=0.440  Sum_probs=91.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHHhhhcccch-hHHHHHHHhhccC-CCcchHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN--YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPV-SHRGRWM   78 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~--~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~-~~Rg~~~   78 (413)
                      +++++.|.++||+|||+.+..+......+.++.++..+  ...+++.|+.+|++.|.. +...+++.|+.|+ ++|+...
T Consensus        54 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (338)
T COG0477          54 IGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAV  133 (338)
T ss_pred             HHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHH
Confidence            45578999999999998888888766666777777777  999999999999998865 6778899999998 7788888


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHhc--CCChHHHHHHhhHHHH
Q 015075           79 VALSA-FWTAGTIFEASLAWVVMT--RLNWRWLLAFSSVPSF  117 (413)
Q Consensus        79 ~~~~~-~~~~G~~~~~~l~~~l~~--~~~Wr~~f~~~~i~~~  117 (413)
                      +.... ...+|.++++.++..+..  ..+||+.|........
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (338)
T COG0477         134 GLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            88887 577888888876666543  3689997666555543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.56  E-value=7.8e-07  Score=87.78  Aligned_cols=138  Identities=22%  Similarity=0.199  Sum_probs=95.1

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....++...|.++.|+++|++|||..+..+.+...+..+......+.....+.-+..+++..+...+...|.+|+-|++
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~  174 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH  174 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence            44556677889999999999999999988877766655555555445444444444555555555667889999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--HLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .|+.-.+.......+|..++ ++.++..+..  ++...+.+..+.+++-.+. .++.||+.+
T Consensus       175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~  234 (513)
T KOG0254|consen  175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPR  234 (513)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChH
Confidence            99999998888877666665 4555444432  3444555555555555555 666777744

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.55  E-value=6.5e-07  Score=85.15  Aligned_cols=118  Identities=15%  Similarity=0.130  Sum_probs=86.7

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh------cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccC-CCc
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF------SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPV-SHR   74 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~------a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~-~~R   74 (413)
                      +|.++.|++.||+|+|+.+..+.++.+...+....      .++...+...-.+++++.|.. +...++..+..++ ++|
T Consensus       259 ~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  338 (390)
T TIGR02718       259 LGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQA  338 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccch
Confidence            56788899999999999988776655332222211      234444555556666666654 4555666677766 889


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHH
Q 015075           75 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALL  120 (413)
Q Consensus        75 g~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~  120 (413)
                      |+..+..+....+|..+++.+++.+.+..||+..|+..++..++..
T Consensus       339 g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       339 GTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998999999988776655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=98.54  E-value=3.3e-06  Score=83.20  Aligned_cols=121  Identities=14%  Similarity=0.132  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhh
Q 015075          272 GLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  345 (413)
Q Consensus       272 g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  345 (413)
                      ..++.|++.||+|||+++.++.+...+..+.....      .+.+...+..+..+.+...........+.+.|| +.|+.
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            45578999999999999988877766554444332      122222222222222222233345556788897 67999


Q ss_pred             HHHHHHhhhhhhHhH-HHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          346 GFGVASSLGKVGGMV-CPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       346 ~~g~~~~~~~~~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      +.|+......+|+.+ +|+....+.+  +....+++.+++.++..++...+
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~~  204 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIVF  204 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999875 4444343322  23345555666555544444443

>PRK10133 L-fucose transporter; Provisional

Probab=98.53  E-value=6.8e-06  Score=79.36  Aligned_cols=108  Identities=13%  Similarity=0.069  Sum_probs=73.1

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          261 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       261 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      ......++..++.++.|.++||+|||+++..+.+...+..+..   ...++........+..+++..........+..|.
T Consensus        66 ~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~  145 (438)
T PRK10133         66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            3445556677889999999999999999888776665544332   2233333333333444444444445556666787


Q ss_pred             cccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      .|.+.|....++.+....+|..++|.+...+
T Consensus       146 ~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777788999999999999999876544

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.51  E-value=6e-06  Score=78.15  Aligned_cols=129  Identities=14%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhh
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  345 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  345 (413)
                      ..+..+..+.+|+++||+|-|+++..+.+.-.++...+.+..+.....+.-+..+++-.... ....+....+|++.|++
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence            34556688899999999999999888877776666665554443333333333333333334 66778899999999999


Q ss_pred             HHHHHHhhhhhhHhHHHHHHHHHhhccchhH--HH-HHHHHHHHHHHHHhhccc
Q 015075          346 GFGVASSLGKVGGMVCPLVAVGLVTSCHLRL--AV-ILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       346 ~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~  396 (413)
                      ++|+.++...+|.++++.+.+. +...+...  .. .+......++.++.+++|
T Consensus       151 atsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999988876 34444321  11 233344456666677765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.49  E-value=3.3e-06  Score=80.66  Aligned_cols=136  Identities=18%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+++++|.+..++++||+|||..+....+......+.+..   .+........-+..+.......+....|..|+-|++
T Consensus        69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~  148 (485)
T KOG0569|consen   69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN  148 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh
Confidence            34567789999999999999998777766555444333332   112222222233333333333455677889999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHH-HHHhhccchhHHHHHH-HHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVA-VGLVTSCHLRLAVILF-EVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~-~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~et~~  401 (413)
                      .||....+......+|-.++..+. +.++++...+.....+ .+.+++. ++.+...||+-+
T Consensus       149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk  209 (485)
T KOG0569|consen  149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPK  209 (485)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcc
Confidence            999988888888788777774433 3444433222222222 3333444 444445578743

>PRK09848 glucuronide transporter; Provisional

Probab=98.46  E-value=2e-06  Score=83.49  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCC-------
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVS-------   72 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~--~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~-------   72 (413)
                      +++++++++.||+|+|+++..+.++..++.++..+.+  +++.+++..++.|+|.+.. +...+...|..|.+       
T Consensus       279 ~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r  358 (448)
T PRK09848        279 ASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR  358 (448)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc
Confidence            5677889999999999999999988888877776654  5677777788899988764 55566666766643       


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNW  105 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~W  105 (413)
                      ++|...+..+....+|..+++.+.+.+.+..|+
T Consensus       359 ~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        359 IEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            458889999999999999998888776554443

>TIGR00896 CynX cyanate transporter

Probab=98.45  E-value=6e-06  Score=77.43  Aligned_cols=109  Identities=10%  Similarity=-0.029  Sum_probs=70.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....++..++.++.|+++||+|||+.+..+.+...+..... ..++........+...+......+....+..|.+| +
T Consensus        41 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~  118 (355)
T TIGR00896        41 TALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q  118 (355)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c
Confidence            344555667789999999999999999887765544433332 22232222222222222222223344556678886 5


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSC  372 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~  372 (413)
                      .|+.+.++.+....+|..++|.+.+.+.+..
T Consensus       119 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896       119 RVGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7999999999988899999988877776543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.43  E-value=1.3e-06  Score=80.42  Aligned_cols=128  Identities=21%  Similarity=0.238  Sum_probs=105.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ++|++++|++.||+|.|+++..+++++++..+..-+...-..+.++=.+.|...|+. ...-+|.++..|+++-|+..++
T Consensus       302 ~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFgl  381 (438)
T COG2270         302 ALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGL  381 (438)
T ss_pred             HHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeeh
Confidence            478999999999999999999999999999888877777777777888999999986 5677999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHhhHHHHHHHHHhhcCCCC
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRL-NWRWLLAFSSVPSFALLLFYGLAPES  129 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~-~Wr~~f~~~~i~~~~~~~~~~~~pEs  129 (413)
                      +....-.++.++|.+.+.+.+.. +=|.-+....+..++.+.....+|+.
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            99999999999999888876543 46665555455445555666666653

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.42  E-value=3.1e-06  Score=85.19  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=70.7

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcc--------------------------------------
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ--------------------------------------  307 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--------------------------------------  307 (413)
                      .++..++.++.+++.||.|||+.+.++.++..+..+.+...+                                      
T Consensus        78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  157 (633)
T TIGR00805        78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ  157 (633)
T ss_pred             hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence            345566788899999999999887766555444333222110                                      


Q ss_pred             -----------h-hH-HHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          308 -----------S-AV-VTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       308 -----------~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                                 + .. ...+.-++.+++.....++...+..|.+|++.|+...|+.+....+|..+++.+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~  233 (633)
T TIGR00805       158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ  233 (633)
T ss_pred             cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence                       0 00 111122222233334456677899999999999999999999999999999988877664

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.42  E-value=1.3e-05  Score=77.24  Aligned_cols=139  Identities=12%  Similarity=0.075  Sum_probs=85.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHH----HhChhHHHHHH-HHHHHHHHHHHHhcchh-----------------HHHHHHHHHH
Q 015075          262 VFIASLAELPGLILSAIIVD----KIGRKLSMVLM-FVSACIFLLPLVFHQSA-----------------VVTTVLLFGV  319 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~d----r~grr~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  319 (413)
                      ..+..+.+++...+.|.++|    |+|||+.++.. .....+.+..+.+..+.                 +.....+...
T Consensus        45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll  124 (477)
T TIGR01301        45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL  124 (477)
T ss_pred             HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence            34555666778888999999    59999987764 33333333333221110                 1111112222


Q ss_pred             HHHhhhhhhhhheecccccccchh--hhHHHHHHhhhhhhHhHHHHHHHHHh--hcc-------------chhHHHHHHH
Q 015075          320 RMCVTGTITVATIYAPEIYPTSAR--TTGFGVASSLGKVGGMVCPLVAVGLV--TSC-------------HLRLAVILFE  382 (413)
Q Consensus       320 ~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~p~~~~~l~--~~~-------------~~~~~~~~~~  382 (413)
                      .++.....+..-++.+|+.|++.|  +.+.+..+....+|+++++.+.+.+.  +..             +....|.+-+
T Consensus       125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a  204 (477)
T TIGR01301       125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI  204 (477)
T ss_pred             HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence            233444455667899999999866  57888888889999999987765431  100             1223455555


Q ss_pred             HHHHHHHHHhhccccccc
Q 015075          383 VVFVLAIASSLLFPFETM  400 (413)
Q Consensus       383 ~~~~~~~~~~~~~~~et~  400 (413)
                      ++.+++.++..+..+|+.
T Consensus       205 ~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       205 ILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHeeeeeccC
Confidence            666777777777778864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.41  E-value=5.1e-06  Score=79.96  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=103.7

Q ss_pred             cccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHHHHhhh
Q 015075          248 LHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL--PLVFHQSAVVTTVLLFGVRMCVTG  325 (413)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  325 (413)
                      ++++..+.+.+.   .....+.+++.+.+|++.||+|-|+++..+.++..+..+  ++......+...++-+..+++...
T Consensus        68 ~~ws~~~k~~i~---ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   68 YDWSSTEKGLIF---SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             ecCCHHHHHHHH---HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            444444444333   233446677888999999999999988887776654433  333222323334445555555556


Q ss_pred             hhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHhhcc
Q 015075          326 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       326 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      .++....+.+.-.|++.|++..++..+..++|.+++-.+.+.+-+. .|+...++++++++++-.++.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            6777888999999999999999999999999999888788888887 777888888888887665555444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.35  E-value=2.4e-05  Score=74.73  Aligned_cols=131  Identities=16%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHh-----ChhHH-HHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHhhhhhhhhheeccccccc
Q 015075          270 LPGLILSAIIVDKI-----GRKLS-MVLMFVSACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  340 (413)
Q Consensus       270 ~~g~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  340 (413)
                      ....++.|.++||+     |||+. +..+.+...+....+.+..   +.+....+.+...++.....+...++.+|..|+
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            45678899999999     88764 4444555444333333321   222222222222333333345567889999999


Q ss_pred             chhhhHHHHHHhhhhhhHhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          341 SARTTGFGVASSLGKVGGMVCPLVAVGLVTS-CHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       341 ~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +.|+.+.++......++..+++.+...+.+. .++...+++.+++.++..+.. +..||++.
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~  186 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEV  186 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcc
Confidence            9999999999988888999988887777664 366667777676666554443 34566643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.34  E-value=0.00016  Score=65.76  Aligned_cols=124  Identities=21%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             cchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHH-H-HHHhhccCCCcchH-HHHH
Q 015075            5 AYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFL-A-YFLEFVPVSHRGRW-MVAL   81 (413)
Q Consensus         5 ~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~-~-~~~E~~p~~~Rg~~-~~~~   81 (413)
                      +.+.|.++||+|||+.-+..+++++++.+ +-..+|+..++++|++.|++........ + ++.|.-.++.+... ...+
T Consensus        86 g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF  164 (354)
T PF05631_consen   86 GTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTF  164 (354)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence            34668899999999999988888888886 5566899999999999999876543222 3 45676433322222 2222


Q ss_pred             HHHHHHHH----HHHHHHHHHHhcCCC--hHHHHHHhhHHHHHHH-HHhhcCCCC
Q 015075           82 SAFWTAGT----IFEASLAWVVMTRLN--WRWLLAFSSVPSFALL-LFYGLAPES  129 (413)
Q Consensus        82 ~~~~~~G~----~~~~~l~~~l~~~~~--Wr~~f~~~~i~~~~~~-~~~~~~pEs  129 (413)
                      ..+..++.    +.+.+++-.+.+..+  -..+|....+..++.. ++...-+|+
T Consensus       165 ~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  165 SLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            21221332    222233333333333  4777877666555543 333344554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.34  E-value=6.7e-07  Score=80.47  Aligned_cols=122  Identities=20%  Similarity=0.200  Sum_probs=86.0

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc--cH--HHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHH
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP--NY--VSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~--~~--~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      |.++.+++-||+|||++|..+.++++++.++.....  |.  .+++++|+....+   +.+++.|.-|.+|...|+...|
T Consensus       397 GlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~---fqvaYvYtPEVyPTavRatgvG  473 (528)
T KOG0253|consen  397 GLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGA---FQVAYVYTPEVYPTAVRATGVG  473 (528)
T ss_pred             chhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhch---heEEEEecCcccchhhhhcchh
Confidence            678899999999999999999999999998776554  33  2456677654433   3455677789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCC
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPES  129 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEs  129 (413)
                      .-..+.-+|.++.|+++ ...+..---.++..+++..+..+...++--|+
T Consensus       474 tcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  474 TCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence            99999999999999988 33332223334444444333333333443354

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.24  E-value=1.6e-05  Score=75.46  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=92.9

Q ss_pred             hhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc-ccHHHHHH----HHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            7 SWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS-PNYVSLVI----FRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         7 ~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a-~~~~~l~~----~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      ..+++..|+|.|+++.++.+.+.+=..+.+.. ++.+...+    .-.++|+..|.. .....|+.|..|++.|++.+++
T Consensus       262 ~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l  341 (400)
T PF03825_consen  262 FSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGL  341 (400)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHH
Confidence            45888999999999999999999988888887 45444333    345699998875 6778999999999999999999


Q ss_pred             HHH-HHHHHHHHHHHHHHHHhcCCC------hHHHHHHhhHHHHHH-HHHhhcCCC
Q 015075           81 LSA-FWTAGTIFEASLAWVVMTRLN------WRWLLAFSSVPSFAL-LLFYGLAPE  128 (413)
Q Consensus        81 ~~~-~~~~G~~~~~~l~~~l~~~~~------Wr~~f~~~~i~~~~~-~~~~~~~pE  128 (413)
                      +.. ...+|..+|..+++.+.+.+|      |...+.+.+...++. ++...+.+|
T Consensus       342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            876 468999999999999987654      555666665555443 333333444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.23  E-value=1e-05  Score=77.60  Aligned_cols=139  Identities=22%  Similarity=0.281  Sum_probs=102.1

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhh
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSART  344 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  344 (413)
                      .++..+..+...|.++||+|||..+....+.+.+-...+.+..  ++... ............+...++++++-..+.|+
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHH
Confidence            3455566788899999999999988776666554333333221  22111 22222223344566788999999999999


Q ss_pred             hHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcchhh
Q 015075          345 TGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELKD  406 (413)
Q Consensus       345 ~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~  406 (413)
                      ...|+.+..-..+..++|...+++....+...++.+-.+..+++.+...+..||+..++.++
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            99999999989999999999998888877777778888888888888889999997766554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.23  E-value=4.3e-08  Score=95.14  Aligned_cols=138  Identities=16%  Similarity=0.188  Sum_probs=87.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHhhhhhhhhheeccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQ---SAVVTTVLLFGVRMCVTGTITVATIYAPEIY  338 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  338 (413)
                      .....++..+|.++.|+++||+|||+.+..+.+...+..+...+.+   +.......-+..+++..+.......+..|..
T Consensus        52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~  131 (451)
T PF00083_consen   52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA  131 (451)
T ss_pred             HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455667788999999999999999988877766655444444443   3333333344445555566778899999999


Q ss_pred             ccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          339 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       339 p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      |++.|+...++.+....+|..++..+.....+..+  .+-....++.+..+..+...++.||+
T Consensus       132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES  194 (451)
T PF00083_consen  132 PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999888888777777766654332211111  11122233333332334445667888

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.21  E-value=0.00032  Score=69.93  Aligned_cols=126  Identities=10%  Similarity=0.080  Sum_probs=96.7

Q ss_pred             cchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc--------------------c-------------------------
Q 015075            5 AYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS--------------------P-------------------------   39 (413)
Q Consensus         5 ~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a--------------------~-------------------------   39 (413)
                      ..+..|.+-|.-|-+.+-.+.++++++++++++=                    +                         
T Consensus       149 i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  228 (735)
T KOG3626|consen  149 IIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKR  228 (735)
T ss_pred             hHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccc
Confidence            4566788888888888889999999999988762                    0                         


Q ss_pred             ----c--H-HHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC---C-----
Q 015075           40 ----N--Y-VSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTR---L-----  103 (413)
Q Consensus        40 ----~--~-~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~---~-----  103 (413)
                          +  + ..++++-++.|+|.... +.+.+|+=|....++-....++......+|+++|-.++.+....   +     
T Consensus       229 ~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  229 EKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             cccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence                0  2 25677889999988764 77889999999999889999999999999999988888876431   1     


Q ss_pred             -----------ChHHHHHHhhHHHHHHHHHhhcCCCCc
Q 015075          104 -----------NWRWLLAFSSVPSFALLLFYGLAPESP  130 (413)
Q Consensus       104 -----------~Wr~~f~~~~i~~~~~~~~~~~~pEsp  130 (413)
                                 -|+.=|++.+...++..+.++++|...
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence                       266667777777777666667776553

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.20  E-value=3.2e-05  Score=67.73  Aligned_cols=121  Identities=16%  Similarity=0.109  Sum_probs=87.4

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS-------PNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a-------~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      ++.|.+.|++|+|.++.++.+...++..+...+       ++++.+.+.-++.|.+.+.. ........+.+| ++||++
T Consensus        54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~v  132 (250)
T PF06813_consen   54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTV  132 (250)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCce
Confidence            678999999999999999999988888766543       46788888888888875543 333344457787 589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAP  127 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~p  127 (413)
                      .++.-....++..+-..+...+.+...-+.+......|.++.+...+++.
T Consensus       133 vgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  133 VGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             ehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence            99999999888887666666665554456665666666655544444443

>PRK09669 putative symporter YagG; Provisional

Probab=98.20  E-value=2.9e-05  Score=75.24  Aligned_cols=103  Identities=12%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHHhhhcccch-hHHHHHHHhhcc-------CC
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF--SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-------VS   72 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~--a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-------~~   72 (413)
                      ++.+++++++||+|||+.+..+.+...+......+  ..+.+.+++..++.|++.+.. +...+.++|..+       ++
T Consensus       279 i~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r  358 (444)
T PRK09669        279 FGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRR  358 (444)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcC
Confidence            56678899999999999998887766654433322  346777888889999988865 555667776654       23


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 015075           73 HRGRWMVALSAFWTAGTIFEASLAWVVMTRLNW  105 (413)
Q Consensus        73 ~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~W  105 (413)
                      ..|...+.......+|..+++.+++.+.+..|+
T Consensus       359 ~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        359 LDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            346677888888899999999988887665544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.17  E-value=1.9e-05  Score=74.44  Aligned_cols=127  Identities=17%  Similarity=0.162  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHhhhhhhhhheeccccccc--chhhhH
Q 015075          272 GLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQ--SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT--SARTTG  346 (413)
Q Consensus       272 g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~  346 (413)
                      ..+++|+++|| +|+|+.++++.++..+--+.+....  ......+.+..+.......=+-......|++|+  ..|-.+
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~g  156 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG  156 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCC
Confidence            56889999999 5999888776665544333333331  111112222222222222223345566777765  237888


Q ss_pred             HHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccccc
Q 015075          347 FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFE  398 (413)
Q Consensus       347 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  398 (413)
                      .++.+...++|++++|++.+++.+..++...|...++-..++.+..++..+.
T Consensus       157 Ft~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         157 FTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             ccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence            9999999999999999999999888887777777666666666665555433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.16  E-value=6.2e-05  Score=73.59  Aligned_cols=103  Identities=14%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh-----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhcc-----
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF-----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-----   70 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~-----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-----   70 (413)
                      +++.+++++++||+|||+.+..+.++..++.+....     ..+.+.+++.-++.|++.+.. +...+++.|..+     
T Consensus       280 ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~  359 (473)
T PRK10429        280 LVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYK  359 (473)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Confidence            356788899999999999998888776655554432     345666677778888887764 455677777755     


Q ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015075           71 --VSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN  104 (413)
Q Consensus        71 --~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  104 (413)
                        ++..|...+......-+|..+++.+.+.+.+..|
T Consensus       360 tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        360 LGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence              2334667788888888999999888887765443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.14  E-value=1.4e-05  Score=75.00  Aligned_cols=121  Identities=10%  Similarity=0.076  Sum_probs=98.5

Q ss_pred             hhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH-HHHH
Q 015075            7 SWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-LSAF   84 (413)
Q Consensus         7 ~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~   84 (413)
                      +..++-+|+|.|+.++++..+.++=.+++++++|.+.+.+.+.+.|+-.+.. .....|+.+.+|+|...+...+ .+..
T Consensus       278 ~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~  357 (412)
T PF01306_consen  278 FSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFA  357 (412)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTT
T ss_pred             HHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999988865 5677999999999988877776 4788


Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCC
Q 015075           85 WTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAP  127 (413)
Q Consensus        85 ~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~p  127 (413)
                      .++|..+.+++++.+.++.|.+..|++.+...+...+ ..+.++
T Consensus       358 ~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  358 KQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            8999999999999999999999888777766655443 334443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.14  E-value=2.7e-05  Score=75.94  Aligned_cols=127  Identities=20%  Similarity=0.181  Sum_probs=91.3

Q ss_pred             hhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH--HHhhhhhhhhheecccccccchhhhH
Q 015075          269 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVR--MCVTGTITVATIYAPEIYPTSARTTG  346 (413)
Q Consensus       269 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~p~~~r~~~  346 (413)
                      ....+.+.+.+.||+|.|.+++.+.+.+.+.++.-.+..+.+..++ .++..  ++....+....+++...| .+.|+.+
T Consensus        94 ~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~l-t~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA  171 (509)
T KOG2504|consen   94 YLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYL-TFGVIGGLGLGLIYLPAVVILGTYF-EKKRALA  171 (509)
T ss_pred             HHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHhhccchhhhcchhhhhhhHh-HHHHHHH
Confidence            3455778899999999999999888877766665555555443222 22221  112222333444555555 5779999


Q ss_pred             HHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Q 015075          347 FGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  397 (413)
Q Consensus       347 ~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (413)
                      +|++.+-..+|.++-|.+.-++++..++..+.++++.+.+-..+....+.|
T Consensus       172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988888999999999999998888777777777766

>TIGR00788 fbt folate/biopterin transporter

Probab=98.14  E-value=8.6e-06  Score=79.27  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh----------cccHHHHHHHHHHhhhcccch-hHHHHHHHhhcc
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF----------SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP   70 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~----------a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p   70 (413)
                      ++|....+.+.+|++.|+++..+.++..++.+....          .++....+..-++++++.|.. .....++.|..|
T Consensus       302 i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p  381 (468)
T TIGR00788       302 LCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCP  381 (468)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCC
Confidence            356777888889999999999999998887755431          134334555667788776643 455788999999


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------hHHHH-HHhhHHHHHHHHHhhcCCC
Q 015075           71 VSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN-------WRWLL-AFSSVPSFALLLFYGLAPE  128 (413)
Q Consensus        71 ~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~~~-------Wr~~f-~~~~i~~~~~~~~~~~~pE  128 (413)
                      ++++|...++.+...++|..+++.+++.+.+..|       .++.. .++.++.++.+...+++|+
T Consensus       382 ~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       382 SGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999998888866544       33332 3344444554555557886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.11  E-value=1.8e-05  Score=72.61  Aligned_cols=108  Identities=12%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             CccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHH
Q 015075            1 MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMV   79 (413)
Q Consensus         1 ~~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~   79 (413)
                      +++|.++.+++.||+|+|+++..+.++..++.++....++...+ ..-++.|++.+.. |...+...|..|++ .++..+
T Consensus       191 ~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asa  268 (310)
T TIGR01272       191 AMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSG  268 (310)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHH
Confidence            35788999999999999999888888777777666665554333 3445788887764 77778888877754 455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 015075           80 ALSAFWTAGTIFEASLAWVVMTRLNWRWLLAF  111 (413)
Q Consensus        80 ~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~  111 (413)
                      +. ....+|..+.|++.+.+.+..|-+..|++
T Consensus       269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v  299 (310)
T TIGR01272       269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL  299 (310)
T ss_pred             HH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence            65 45668889999999999888898888774

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.10  E-value=1.3e-06  Score=80.90  Aligned_cols=128  Identities=18%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhccc-HH---HHHHHHHHhhh-cc-cchhHHHHHHHhhccCCCcchH
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPN-YV---SLVIFRCFVGV-GL-GGVPVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~-~~---~l~~~R~l~G~-~~-g~~~~~~~~~~E~~p~~~Rg~~   77 (413)
                      |..+..++.|++|||+..+.+.+++++..+..+...| ..   .++++-.+..+ +. |...+...+-+|.+|.+.||..
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~  443 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTC  443 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhh
Confidence            5566778999999999999999999999999999888 22   12222222222 11 2112223445799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHhhHHHHHHHHHhhcCCCCch
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMT-----RLNWRWLLAFSSVPSFALLLFYGLAPESPR  131 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~-----~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~  131 (413)
                      .++...+.-+|.+++......+.+     ..+-|+.|++.+...++..+..+++|||..
T Consensus       444 hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  444 HGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             hhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            999999999999999887777776     678999999988888888888888999865

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.03  E-value=0.0036  Score=58.64  Aligned_cols=115  Identities=19%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             hhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccc-hhHHHHHHHhhccCCCcchHHHHHHHHH
Q 015075            7 SWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGG-VPVFLAYFLEFVPVSHRGRWMVALSAFW   85 (413)
Q Consensus         7 ~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~   85 (413)
                      +.-++.+|+.-+.=.....+++.++.++.++++|.+.=+++-++.|++.|. ...-..+. ..+|+.    ..+.+..+.
T Consensus        78 ~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~~----~l~~wssGT  152 (402)
T PF02487_consen   78 IAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGKS----SLSAWSSGT  152 (402)
T ss_pred             HhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCcc----ccccccCCc
Confidence            345566766544445566667888889999999999888888999988774 33333333 345542    345667777


Q ss_pred             HHHHHHHHHHHHHHhc-CCChHHHHHHhhHHHHHHHHHhhcC
Q 015075           86 TAGTIFEASLAWVVMT-RLNWRWLLAFSSVPSFALLLFYGLA  126 (413)
Q Consensus        86 ~~G~~~~~~l~~~l~~-~~~Wr~~f~~~~i~~~~~~~~~~~~  126 (413)
                      ..+.++|+..-..+.+ ...-|..+.+..+.+++..+.++++
T Consensus       153 G~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  153 GGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             ChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777777765444444 2334777766665555554444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.00029  Score=64.86  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=76.3

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF---HQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .-.+...+.+..+++.+|+|+|.-++.+..+..+.+..+.-   ..+.......++..........+....++..+.|++
T Consensus        57 ff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~  136 (422)
T COG0738          57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE  136 (422)
T ss_pred             HHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence            33345667888999999999999998888777665554432   111122233334444444445566777889999998


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      ..+.-.++...+..+|++++|.+...++.
T Consensus       137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            88888999999999999999999887765

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.98  E-value=2.6e-05  Score=75.14  Aligned_cols=101  Identities=18%  Similarity=0.352  Sum_probs=83.5

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHhhhcccch-hHHHHHHHhhcc-------C
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVP-------V   71 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~--~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p-------~   71 (413)
                      +++.+++++++||+|||+++..+.++.+++.++..+.+  |.+.+++.-++.|++.|.. ....++++|..+       +
T Consensus       274 ~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~  353 (428)
T PF13347_consen  274 IVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR  353 (428)
T ss_pred             HHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC
Confidence            35678899999999999999999999999999988886  9999999999999998864 444566666554       3


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015075           72 SHRGRWMVALSAFWTAGTIFEASLAWVVMTR  102 (413)
Q Consensus        72 ~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~  102 (413)
                      ++.|...+.......+|..+++.+.+.+.+.
T Consensus       354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             CchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4458888999999999999988887776543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.94  E-value=0.00022  Score=62.53  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=63.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh--cc----hhHHHHHH-HHHHHHHhhhhhhhhheec
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF--HQ----SAVVTTVL-LFGVRMCVTGTITVATIYA  334 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~  334 (413)
                      .....++... ++..|.+.|+.|.|.+..++.+....-...+..  ..    ...+...+ .+..........+.....+
T Consensus        43 ~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~  121 (250)
T PF06813_consen   43 STAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC  121 (250)
T ss_pred             HHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence            3444555444 478899999999999888877766554433332  11    11122221 1111111111223344566


Q ss_pred             ccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          335 PEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       335 ~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      .+.||. .||++.|+.-....+++.+-..+...+.+
T Consensus       122 ~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  122 VRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            789985 69999999999988887766665554444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.0002  Score=69.42  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=99.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      ..+..++.+++.+.++.+.||+.-.+.+..+.+.-.++.+.-...++.....++-+..+++-.+.++..-.+....|.++
T Consensus        87 ~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~  166 (495)
T KOG2533|consen   87 DTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS  166 (495)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh
Confidence            34556677889999999999999444444333333222222222334444455555666676777888888999999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHh------hccchhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLV------TSCHLRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      .|+.-.|+-++...+|+++++++...+.      ...++.+.|++-+++.++..+++++.+|+-..
T Consensus       167 e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  167 ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            9999999999999999999999887643      23456677888888888888778777775544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.79  E-value=0.00018  Score=58.19  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=80.5

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      +.+++...+.+++|.|+.++++.+.+.+-.... +-++.+.++..-++.|++.+.. .....|+.|..+++.|++-.+++
T Consensus        52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~if  130 (156)
T PF05978_consen   52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIF  130 (156)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHH
Confidence            456777889999999999999999888665543 5677888999999999999875 55668999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 015075           82 SAFWTAGTIFEASLAWVV   99 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l   99 (413)
                      ......+.++|..+...+
T Consensus       131 w~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  131 WAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888887776655

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.76  E-value=5.6e-05  Score=71.73  Aligned_cols=120  Identities=12%  Similarity=0.078  Sum_probs=102.9

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHH
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAF   84 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   84 (413)
                      ++.+.+.+|+||-+++.+++..+.+=-+..+..+|.|+.+-.-++||+..+.. ....+|++...||+.|..+.++++..
T Consensus       424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~  503 (618)
T KOG3762|consen  424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGI  503 (618)
T ss_pred             HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHH
Confidence            45688999999999999998888888888899999999999999999999875 67789999999999999999988754


Q ss_pred             H-HHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc
Q 015075           85 W-TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL  125 (413)
Q Consensus        85 ~-~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~  125 (413)
                      . .+|--+|+++++.+.+.++=|..|.+.++.+++.+.....
T Consensus       504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            4 7888889999999999999999998888777665544433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00051  Score=65.40  Aligned_cols=99  Identities=24%  Similarity=0.364  Sum_probs=75.5

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHhhhcccch-hHHHHHH------HhhccCCC
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP--NYVSLVIFRCFVGVGLGGV-PVFLAYF------LEFVPVSH   73 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~--~~~~l~~~R~l~G~~~g~~-~~~~~~~------~E~~p~~~   73 (413)
                      ++.+++..+.+|+|||+++.++.+++.++.++.-+.+  +....++..++.++|.+.. +...+++      .||-..++
T Consensus       287 ~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R  366 (467)
T COG2211         287 IGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVR  366 (467)
T ss_pred             HHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCC
Confidence            3567889999999999999999999999999998887  6888889999988877642 2223332      45655444


Q ss_pred             c-chHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015075           74 R-GRWMVALSAFWTAGTIFEASLAWVVMT  101 (413)
Q Consensus        74 R-g~~~~~~~~~~~~G~~~~~~l~~~l~~  101 (413)
                      | |...+......=+|..++..+.++++.
T Consensus       367 ~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         367 REGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 777777788888888888766666543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.71  E-value=0.05  Score=51.94  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHH----HHHhcch---hHHHHHHHHHHHHHhhhhhh---hhh
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL----PLVFHQS---AVVTTVLLFGVRMCVTGTIT---VAT  331 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~  331 (413)
                      -.+.++.++.|+++..++.+|+|-.+.-..+......++.    .+....+   ......++.++...=.|.++   ...
T Consensus       299 R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~  378 (432)
T PF06963_consen  299 RGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVT  378 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3456667888999999999999976655444433322211    1222221   22222222222222233332   355


Q ss_pred             eecccccccchhhhHHHHHHhhhhhhHhHHHH
Q 015075          332 IYAPEIYPTSARTTGFGVASSLGKVGGMVCPL  363 (413)
Q Consensus       332 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~  363 (413)
                      -+..|..|.+.|+.-.|+-++..++...+.-.
T Consensus       379 qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  379 QIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             HhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999887766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.68  E-value=0.00048  Score=69.28  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             cchhhHhhh-hcCChHHHHHHHHHHHHHHHHHhhccc--------HHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC-
Q 015075            5 AYSWGIISD-NYGRRKSFLGIAMVTSVAGLLSSFSPN--------YVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH-   73 (413)
Q Consensus         5 ~~~~g~l~D-r~Grr~~~~~~~~l~~~~~~~~~~a~~--------~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~-   73 (413)
                      .++.|+++| ++||++.+.++.++..++..+.+++..        ....+++=.+..+|.|+. |...+...|.+++++ 
T Consensus        40 pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~  119 (654)
T TIGR00926        40 PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL  119 (654)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch
Confidence            467799999 799999999999999998888776421        123455666666778776 777788888877653 


Q ss_pred             --cchHHHHHHHHHHHHHHHHHHHHHHHhcC-------CChHHHHHHhhHHHHHHHHH
Q 015075           74 --RGRWMVALSAFWTAGTIFEASLAWVVMTR-------LNWRWLLAFSSVPSFALLLF  122 (413)
Q Consensus        74 --Rg~~~~~~~~~~~~G~~~~~~l~~~l~~~-------~~Wr~~f~~~~i~~~~~~~~  122 (413)
                        |-++..++..+.++|+++++.+...+.+.       .+|...|.+.++..++.+++
T Consensus       120 ~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       120 SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence              45566677777788888887777766533       36999999888777655443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.62  E-value=0.00025  Score=63.68  Aligned_cols=121  Identities=16%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             hhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccchhHHHHHHHhhccCCCcchHHHHHHHHHHHHHH
Q 015075           11 ISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTI   90 (413)
Q Consensus        11 l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   90 (413)
                      +.|..-=|++++.-.+.....+.+.-+.++.+.+-+.-+.-|...+...+-++|+-+..+|+++-++++.-......|..
T Consensus        65 LTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~  144 (433)
T KOG3810|consen   65 LTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKF  144 (433)
T ss_pred             HhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhH
Confidence            56766668888777777888888899999999999999999988777777778999999999999999988888888888


Q ss_pred             HHHHHHHHHhc--CCChHHHHHHhhHHHHHHHHHhhcCCCCch
Q 015075           91 FEASLAWVVMT--RLNWRWLLAFSSVPSFALLLFYGLAPESPR  131 (413)
Q Consensus        91 ~~~~l~~~l~~--~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~  131 (413)
                      .|..++-.+..  ..+.+.+-.+.-.-..+.....+++|.-+|
T Consensus       145 ~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  145 VGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             HHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCch
Confidence            88877776653  344555444443333344555566665544

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.60  E-value=0.0031  Score=60.25  Aligned_cols=127  Identities=17%  Similarity=0.155  Sum_probs=87.5

Q ss_pred             hhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhH
Q 015075          267 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  346 (413)
Q Consensus       267 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  346 (413)
                      .+.++..++.+++.+|+|+-+++..++....+=.+.+..-++.|..+-+=..........+...-.|.+...|++.|+++
T Consensus       417 ~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~  496 (618)
T KOG3762|consen  417 AGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATA  496 (618)
T ss_pred             cchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence            34566777889999999998887776665555444445555665544333333344444556666789999999999999


Q ss_pred             HHHHHhhh-hhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhh
Q 015075          347 FGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSL  393 (413)
Q Consensus       347 ~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  393 (413)
                      .|+....- .+|--++.++.+.+....+....+.++++.+++..+...
T Consensus       497 Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  497 QGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            99987764 355556677777777777767778888877776654444

>PRK11462 putative transporter; Provisional

Probab=97.55  E-value=0.0028  Score=61.74  Aligned_cols=138  Identities=14%  Similarity=0.092  Sum_probs=76.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHH----hChhHHHHH-HHHHHHHHHHHHHhcc----hh--HHHHHHHHHHHHHhhhhhhhh
Q 015075          262 VFIASLAELPGLILSAIIVDK----IGRKLSMVL-MFVSACIFLLPLVFHQ----SA--VVTTVLLFGVRMCVTGTITVA  330 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr----~grr~~~~~-~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~  330 (413)
                      ..+.-+...+.-.+.|.++||    +|||+.++. +.+...+....+....    +.  ....+.......+........
T Consensus        51 ~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy  130 (460)
T PRK11462         51 FLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPY  130 (460)
T ss_pred             HHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccH
Confidence            344444555667788999997    588766543 4444444433333221    11  111111111122222222345


Q ss_pred             heecccccc-cchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-------hhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          331 TIYAPEIYP-TSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-------LRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       331 ~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .++.+|+-+ ++.|+...+.-...+.+|+.+++.+...+....+       ......+++++++++.+++++..+|.
T Consensus       131 ~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        131 CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            567788877 6889999999999889888888776554444322       12234555666555555555555554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.12  E-value=0.075  Score=46.54  Aligned_cols=68  Identities=21%  Similarity=0.346  Sum_probs=44.7

Q ss_pred             hhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHH-HHHhhccCCCcchH
Q 015075            7 SWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLA-YFLEFVPVSHRGRW   77 (413)
Q Consensus         7 ~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~-~~~E~~p~~~Rg~~   77 (413)
                      +.|-++|+-|||+.=+.-++.++++. ++-.+|.|-.++++|++-|++..-. +.--+ ++.|.-  ++||.-
T Consensus        91 ivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~Fe  160 (454)
T KOG4332|consen   91 IVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFE  160 (454)
T ss_pred             HHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCCh
Confidence            44679999999996544444444333 2446788999999999999987653 33223 567765  344443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.05  E-value=0.34  Score=46.94  Aligned_cols=95  Identities=13%  Similarity=0.155  Sum_probs=64.4

Q ss_pred             cchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc--c--c---------------------------HHHHHHHHHHhhh
Q 015075            5 AYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS--P--N---------------------------YVSLVIFRCFVGV   53 (413)
Q Consensus         5 ~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a--~--~---------------------------~~~l~~~R~l~G~   53 (413)
                      .++.+++++|++|++.+-.....+...-.+.++.  |  +                           .|...++-+...+
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el  140 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL  140 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence            3567999999999999877776666555554443  1  1                           1111122222222


Q ss_pred             cccc--hh-HHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Q 015075           54 GLGG--VP-VFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVM  100 (413)
Q Consensus        54 ~~g~--~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~  100 (413)
                      = |.  .+ .-..+..|.+++++-.|..+++..+.++|.++++.+...+.
T Consensus       141 w-~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       141 W-GSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             H-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 11  22 33577899999999999999999999999999998777765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.0044  Score=54.47  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             ccchhhHhhhhcCChHHHHHHHHHHHHHH-HHHhhcccHHHHHHHHHHhhhcccchhH-HHHHHHhhccCCCcchHHHHH
Q 015075            4 GAYSWGIISDNYGRRKSFLGIAMVTSVAG-LLSSFSPNYVSLVIFRCFVGVGLGGVPV-FLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         4 G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~-~~~~~a~~~~~l~~~R~l~G~~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      -+.++|.++||+||+...+.+.++..+.. ....|  +++.=++.-.+.|++-..... ..+.++-..|.++-|++.++.
T Consensus       316 ~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~  393 (459)
T KOG4686|consen  316 LSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFI  393 (459)
T ss_pred             hhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHH
Confidence            46788999999999998877665544332 22222  233334555667776443332 356677888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHhh
Q 015075           82 SAFWTAGTIFEASLAWVVMTRLN---WRWLLAFSS  113 (413)
Q Consensus        82 ~~~~~~G~~~~~~l~~~l~~~~~---Wr~~f~~~~  113 (413)
                      +...++|..+.+++++.+.+..|   |--.|++..
T Consensus       394 qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  394 QSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            99999999999999999887544   555555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.02  E-value=0.0033  Score=59.39  Aligned_cols=106  Identities=17%  Similarity=0.248  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhc--c-cH------HHHHHHHHHhhhcccch-hHHHHHHHhhccCCC---cchHHHHHHHHH
Q 015075           19 KSFLGIAMVTSVAGLLSSFS--P-NY------VSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH---RGRWMVALSAFW   85 (413)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~a--~-~~------~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~   85 (413)
                      +++.++.+++.+|.++..++  + +.      ..++++-++.++|.|+. |...++.+|.+++++   |.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56778888888888874333  2 22      57888889999999987 888899999888764   455556778888


Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhh
Q 015075           86 TAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYG  124 (413)
Q Consensus        86 ~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~  124 (413)
                      ++|..++..+..++-++.+|.+.|.+.++..++.+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~  120 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL  120 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence            999998888777888899999999998877666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.98  E-value=0.022  Score=57.52  Aligned_cols=122  Identities=16%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhc---ch--h---HHHHHHHHHHHHHhhhhhhhhheeccccccc-
Q 015075          271 PGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFH---QS--A---VVTTVLLFGVRMCVTGTITVATIYAPEIYPT-  340 (413)
Q Consensus       271 ~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~---~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-  340 (413)
                      +..+++|++.|+ +||++.+.++.+...+....+...   ..  .   ......+..+..+..+.-+...+...|.+++ 
T Consensus        38 l~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~  117 (654)
T TIGR00926        38 LTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEER  117 (654)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCcc
Confidence            456788999998 699888777655543322222221   00  0   1111122222222222223445566676754 


Q ss_pred             --chhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHHHh
Q 015075          341 --SARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-------HLRLAVILFEVVFVLAIASS  392 (413)
Q Consensus       341 --~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~  392 (413)
                        +.|.....+.+..+++|+++++.+.+++-+..       +...++.+.+++.+++.++.
T Consensus       118 ~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       118 QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence              34778899999999999999998888775432       23344544444545444443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.90  E-value=0.033  Score=51.03  Aligned_cols=133  Identities=14%  Similarity=0.001  Sum_probs=68.6

Q ss_pred             hhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhh--hhe---ecccccccchh
Q 015075          269 ELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITV--ATI---YAPEIYPTSAR  343 (413)
Q Consensus       269 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~e~~p~~~r  343 (413)
                      ..+.+.+.|.+.||+|||+.-+..++.-.+.++.-.. .+.......-+..+......++.  .|.   ....-+|++..
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~-~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS-SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3445667899999999999877766666655543222 22221111111111111111111  111   22234566655


Q ss_pred             hhHHHHHHhh-hhhhHhHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          344 TTGFGVASSL-GKVGGMVCPLVAVGLVTSCH--LRLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       344 ~~~~g~~~~~-~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      +...+.+... +.+.++.+..+...+.+..+  ...|+.....+.+++.+++...-+|..+.
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            5555545422 23344555555544444433  34567666666677777776666676553

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.0041  Score=58.29  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             ccchhhHhhh----hcCChHHHHHHHHH-HHHHHHHHhhcccHHHHHH------------HHHHhhhc---ccc--h-hH
Q 015075            4 GAYSWGIISD----NYGRRKSFLGIAMV-TSVAGLLSSFSPNYVSLVI------------FRCFVGVG---LGG--V-PV   60 (413)
Q Consensus         4 G~~~~g~l~D----r~Grr~~~~~~~~l-~~~~~~~~~~a~~~~~l~~------------~R~l~G~~---~g~--~-~~   60 (413)
                      -|++-|..+|    ||||||.++....+ ..++.++.+++.++..++.            .-++.|+.   .+.  . ..
T Consensus        83 vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp  162 (498)
T KOG0637|consen   83 VQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGP  162 (498)
T ss_pred             ecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhh
Confidence            3566688888    79999998877755 4566667888887655432            23444542   122  1 34


Q ss_pred             HHHHHHhhccCCCcch-HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 015075           61 FLAYFLEFVPVSHRGR-WMVALSAFWTAGTIFEASLAWVVMTRLNWRWLL  109 (413)
Q Consensus        61 ~~~~~~E~~p~~~Rg~-~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f  109 (413)
                      .-++..+..-+++|-+ +++.+..+..+|.++|..++.    +.+|+-.|
T Consensus       163 ~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~~  208 (498)
T KOG0637|consen  163 CRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS----YLGLYKIF  208 (498)
T ss_pred             HHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc----ccCceEEe
Confidence            4578888877776666 899999999999887665554    45666543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.84  E-value=0.007  Score=58.33  Aligned_cols=129  Identities=22%  Similarity=0.232  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHh---C--hhHHHHHHHHHHHHHHHHHHh-c---chhHHHHHHHHHHHHHhhhhhhhhheeccccc---cc
Q 015075          273 LILSAIIVDKI---G--RKLSMVLMFVSACIFLLPLVF-H---QSAVVTTVLLFGVRMCVTGTITVATIYAPEIY---PT  340 (413)
Q Consensus       273 ~~~~g~l~dr~---g--rr~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~  340 (413)
                      -.+.|.++|-+   |  ||.-++++.+++..+...+.. .   .+......+++...++....-.+.-+...|..   |.
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            45788999986   3  455555666666444443332 1   12222223333333333333333445555665   44


Q ss_pred             chhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          341 SARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       341 ~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      + |+.-.+.++.+..+|++++..+.|.+.+..+....+.+.+.+..+..+..+++.+|.+.+
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~  181 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR  181 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence            4 778888888888899999998888888877766667777777777767777777774443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.78  E-value=0.55  Score=45.16  Aligned_cols=42  Identities=14%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             hhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          328 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       328 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      ....++-+.+-.|.+-||-+.+-|.+.|+||-.-..+.-.+.
T Consensus       424 Vai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lV  465 (544)
T PF13000_consen  424 VAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLV  465 (544)
T ss_pred             HHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHh
Confidence            344566677888999999999999999999866554444444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.61  E-value=0.3  Score=47.37  Aligned_cols=49  Identities=6%  Similarity=-0.064  Sum_probs=40.9

Q ss_pred             HHhhhhhh-hhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          321 MCVTGTIT-VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       321 ~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      .+.....+ +.|.+.+|++..+...+-.++....+++|.++++.+..++.
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333445 78999999999999999999999999999999998876654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.47  E-value=0.029  Score=52.26  Aligned_cols=104  Identities=12%  Similarity=0.043  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhC-----hhHHHHH-HHHHHHHH--HHHH---Hhcc-------hhHHH----HHHHHHHHHHhhhhhhh
Q 015075          272 GLILSAIIVDKIG-----RKLSMVL-MFVSACIF--LLPL---VFHQ-------SAVVT----TVLLFGVRMCVTGTITV  329 (413)
Q Consensus       272 g~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~--~~~~---~~~~-------~~~~~----~~~~~~~~~~~~~~~~~  329 (413)
                      .....|+.+|+.+     ||..++. +.+.....  ..+.   ....       +.+..    ...+...+.+.....+.
T Consensus        30 ~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~  109 (403)
T PF03209_consen   30 LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTS  109 (403)
T ss_pred             HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHH
Confidence            4677899999988     8876554 33332221  1111   1122       12111    11122223333334455


Q ss_pred             hheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchh
Q 015075          330 ATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR  375 (413)
Q Consensus       330 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~  375 (413)
                      .-+..+|..|++.|+.+.++.+.+--+|-+++..+.+.+++.++..
T Consensus       110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~  155 (403)
T PF03209_consen  110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE  155 (403)
T ss_pred             HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence            6788999999999999999999999999999999999888876543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.41  E-value=0.47  Score=45.72  Aligned_cols=39  Identities=13%  Similarity=0.056  Sum_probs=28.2

Q ss_pred             hhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHH
Q 015075          326 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLV  364 (413)
Q Consensus       326 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~  364 (413)
                      ..+..+.+.++..+++.|-.+..+...+-.+|-.++..+
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677788888999989888877777766665555543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.11  E-value=1.7  Score=43.45  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             ccchhhHhhh-hcCChHHHHHHHHHHHHHHHHHhhccc-------------------------HHHHHHHHHHhhhcccc
Q 015075            4 GAYSWGIISD-NYGRRKSFLGIAMVTSVAGLLSSFSPN-------------------------YVSLVIFRCFVGVGLGG   57 (413)
Q Consensus         4 G~~~~g~l~D-r~Grr~~~~~~~~l~~~~~~~~~~a~~-------------------------~~~l~~~R~l~G~~~g~   57 (413)
                      ..++.++++| .+||-+++.++.++..++..+..++..                         ...++...-+..+|.|+
T Consensus        89 ~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg  168 (571)
T KOG1237|consen   89 LPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGG  168 (571)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCC
Confidence            3467789999 679999999988888877654433211                         12455566677778888


Q ss_pred             h-hHHHHHHHhhcc---C-CCcc--hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH
Q 015075           58 V-PVFLAYFLEFVP---V-SHRG--RWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL  121 (413)
Q Consensus        58 ~-~~~~~~~~E~~p---~-~~Rg--~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~  121 (413)
                      . +...++-+|-++   + +.+.  ....++....+.|..++..+-..+-++.+|.+-|.+..+..++.++
T Consensus       169 ~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~  239 (571)
T KOG1237|consen  169 IRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAIL  239 (571)
T ss_pred             CCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHH
Confidence            6 766677777776   3 3333  5667778888888888766555555678999988877665544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.58  E-value=0.21  Score=47.18  Aligned_cols=107  Identities=17%  Similarity=0.097  Sum_probs=64.3

Q ss_pred             HHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHhh---hhhhhhheeccc
Q 015075          265 ASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF-----HQSAVVTTVLLFGVRMCVT---GTITVATIYAPE  336 (413)
Q Consensus       265 ~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e  336 (413)
                      -.+..++-.+.+.|+.||+|-|.....+....++-...=..     .++....-+...+...+..   -...++.-...-
T Consensus        88 ym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~  167 (480)
T KOG2563|consen   88 YMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAV  167 (480)
T ss_pred             HHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHh
Confidence            33445666778889999999999888777666543332111     1121111111222211111   111233445667


Q ss_pred             ccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhc
Q 015075          337 IYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTS  371 (413)
Q Consensus       337 ~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~  371 (413)
                      .||++.|++++.+..+.+.+|..++..+.+.+..+
T Consensus       168 WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  168 WFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            78999999999999999899888887665555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=95.57  E-value=0.33  Score=44.62  Aligned_cols=128  Identities=14%  Similarity=0.045  Sum_probs=77.6

Q ss_pred             HHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchh
Q 015075          264 IASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSAR  343 (413)
Q Consensus       264 ~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  343 (413)
                      +..++-.....+..++.+|+|-++.+..+++...+-...=... +.............++.....+....+-|-||++ .
T Consensus        55 LPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~  132 (395)
T COG2807          55 LPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-V  132 (395)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-h
Confidence            3333333345677788889887777666554443322211111 1111122222222333333445667788899866 6


Q ss_pred             hhHHHHHHhhhhhhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHhh
Q 015075          344 TTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSL  393 (413)
Q Consensus       344 ~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  393 (413)
                      +..+|+....-.+++.+++.....+.++. ++..+..++...++++.++.+
T Consensus       133 ~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         133 GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            77788888888888888888887777665 466777888888777755554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.21  E-value=1.7  Score=40.49  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=32.9

Q ss_pred             hhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          328 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       328 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      -..++..+.+-|+.+-|+-+.+-|...++|+-.=..+...+.|
T Consensus       388 v~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  388 VSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            3455678899999999999999999999987654445554543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.12  E-value=0.34  Score=46.72  Aligned_cols=139  Identities=19%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhCh-hHHHHHHHHHHHHHHHHH-H--hcchhHHHHHHHHHHHHHhhh--hhhhhheecc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGR-KLSMVLMFVSACIFLLPL-V--FHQSAVVTTVLLFGVRMCVTG--TITVATIYAP  335 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  335 (413)
                      .-...++.+.+.+..|+...|.++ |+.++.+++++.+..+.+ .  ...+.. ...+++.-.+...|  .....=.|.+
T Consensus        77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~-~y~mL~~R~l~Gvg~~n~a~lR~Y~a  155 (488)
T KOG2325|consen   77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGV-KYLMLVARILTGVGVGNFAVLRAYIA  155 (488)
T ss_pred             HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHcCcCcccHHHHHHHHH
Confidence            344566777888899999999883 444455555554443333 2  222211 12222222222222  2233445666


Q ss_pred             cccccchhhhHHHHHHhhhhhhHhHHHHHHH---HHhhc---------cc-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          336 EIYPTSARTTGFGVASSLGKVGGMVCPLVAV---GLVTS---------CH-LRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       336 e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~---~l~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +---.+.|..+.+..+..--+|.+++|.+..   .|.+.         .+ ++.+.++..++.++..+...++..|...
T Consensus       156 ~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  156 DASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             hccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            6444444555555554433445555554332   22211         11 2356677788888888888777666543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.12  E-value=0.57  Score=37.94  Aligned_cols=101  Identities=13%  Similarity=0.070  Sum_probs=63.0

Q ss_pred             hhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhH
Q 015075          267 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG  346 (413)
Q Consensus       267 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  346 (413)
                      ....+++++.+.+.+++|.|..++++.+.-.+........ +.+.....-...+++....+..-..+..+.-+++.|++-
T Consensus        48 ~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~  126 (156)
T PF05978_consen   48 GSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRN  126 (156)
T ss_pred             HHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence            3345567788899999999999888777665544443322 222222222222222223334444567777788899999


Q ss_pred             HHHHHhhhhhhHhHHHHHHHHH
Q 015075          347 FGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       347 ~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      .++...+.+.+.+++..+...+
T Consensus       127 ~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  127 TGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888777777655433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.97  E-value=0.52  Score=42.10  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             hhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHhhhhhhhhheeccccccc-chh
Q 015075          267 LAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQS--AVVTTVLLFGVRMCVTGTITVATIYAPEIYPT-SAR  343 (413)
Q Consensus       267 ~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r  343 (413)
                      +....+.+..|.+.||.|||+.+..+...............+  ...................+....+.+|..|. +.|
T Consensus        50 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  129 (338)
T COG0477          50 LGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATER  129 (338)
T ss_pred             HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHH
Confidence            334445588999999999997666655431111111122222  22222222222233334456677888999987 678


Q ss_pred             hhHHHHHHh-hhhhhHhHHHHHHHHHhh
Q 015075          344 TTGFGVASS-LGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       344 ~~~~g~~~~-~~~~~~~~~p~~~~~l~~  370 (413)
                      +...+.... ...++...+|.+.+.+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477         130 GLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888877 466777777766555544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.68  E-value=4.7  Score=39.44  Aligned_cols=95  Identities=20%  Similarity=0.249  Sum_probs=60.5

Q ss_pred             chhhHhhhhcCChHHHHHHHHHHHHHHHHHhhc---------ccH----------------------HHHHHHHHHhhhc
Q 015075            6 YSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFS---------PNY----------------------VSLVIFRCFVGVG   54 (413)
Q Consensus         6 ~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a---------~~~----------------------~~l~~~R~l~G~~   54 (413)
                      .+...++|+++|.+++-+.+..+...-.+.++.         ++.                      |.+.++-++.-+ 
T Consensus        77 ~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl-  155 (491)
T PF03219_consen   77 ILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL-  155 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            356789999999999877776665444444432         111                      111111111111 


Q ss_pred             ccch--hH-HHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015075           55 LGGV--PV-FLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT  101 (413)
Q Consensus        55 ~g~~--~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~  101 (413)
                      .|..  +. -..+..|.++.+|-.|..+++..+.++|.++++.+...+.+
T Consensus       156 wgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  156 WGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  21 24567899999999999999999999999998877776665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.47  E-value=1.4  Score=38.68  Aligned_cols=54  Identities=19%  Similarity=0.271  Sum_probs=34.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHH-----hcCCChHHHHHHhhHHHHHHHHHhhc
Q 015075           72 SHRGRWMVALSAFWTAGTIFEASLAWVV-----MTRLNWRWLLAFSSVPSFALLLFYGL  125 (413)
Q Consensus        72 ~~Rg~~~~~~~~~~~~G~~~~~~l~~~l-----~~~~~Wr~~f~~~~i~~~~~~~~~~~  125 (413)
                      ++|+..+.+-..++++|.++.....-.-     .-.-+|++++.+.++..++-++.+.+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778778888888899988764332111     11246999988877766554444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.59  E-value=8.9  Score=37.57  Aligned_cols=42  Identities=10%  Similarity=0.011  Sum_probs=37.0

Q ss_pred             hhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHhh
Q 015075          329 VATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLVT  370 (413)
Q Consensus       329 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~  370 (413)
                      +.|.+.+|+.+.+...+-.++....+++|.+++..+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999988877665554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=92.40  E-value=0.086  Score=36.98  Aligned_cols=27  Identities=30%  Similarity=0.662  Sum_probs=22.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVT   28 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~   28 (413)
                      +++++++|.++||+||++.......++
T Consensus        49 ~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   49 FLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            367899999999999999887665543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=92.19  E-value=6.6  Score=37.32  Aligned_cols=124  Identities=17%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHH--HHHHHHHhhhhhhhhheecccccccchhhhHHHHH
Q 015075          273 LILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVL--LFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA  350 (413)
Q Consensus       273 ~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  350 (413)
                      .+....+.|.++-|++++...+...+....+.+.++...+-..  +++...   +.-...+.|.=-..|++.--.+.+.+
T Consensus        58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~---a~evay~sYiys~v~~~~yq~vts~~  134 (412)
T PF01770_consen   58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLAT---AAEVAYYSYIYSVVDKEHYQKVTSYT  134 (412)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH---HHHHHHHHHheeecCHHHHHHHHHHH
Confidence            3566789999999999888777766655555544443322221  222211   11122334444455677667777877


Q ss_pred             HhhhhhhHhHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHhhcccccc
Q 015075          351 SSLGKVGGMVCPLVAVGLVTS--CHLRLAVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       351 ~~~~~~~~~~~p~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .+..-+|-+++..+.-.+...  .+......+......++.++.+++|+.+
T Consensus       135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            777767666666554333332  2222222333333455666667766544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.81  E-value=0.99  Score=42.63  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=54.5

Q ss_pred             HhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 015075           35 SSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV   99 (413)
Q Consensus        35 ~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l   99 (413)
                      .-+.++.+..++.-+..|+..|.. ......+.|..|+++|-..++....+.+.|.+++..++..+
T Consensus       329 ~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  329 YRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            345688999999999999976664 55667788889999999999999999999999988877654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.73  E-value=3.5  Score=39.93  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHhhcccccc
Q 015075          377 AVILFEVVFVLAIASSLLFPFET  399 (413)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~et  399 (413)
                      .+.+++...++..+.+.++.+|.
T Consensus       202 yl~fwg~~~l~~T~~v~~~k~E~  224 (544)
T PF13000_consen  202 YLKFWGWVFLIVTILVAFFKKEK  224 (544)
T ss_pred             HHHHHHHHHHHHHHHHheEeecc
Confidence            34556667666667777776664

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=88.55  E-value=11  Score=36.32  Aligned_cols=57  Identities=12%  Similarity=0.064  Sum_probs=38.3

Q ss_pred             ccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          339 PTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       339 p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      ++...+..++...-+-.++.+++|.+.+.+++..+......+.++..+++...=+++
T Consensus       143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666677999999999988876666555555555555555544433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=87.38  E-value=0.18  Score=46.18  Aligned_cols=38  Identities=24%  Similarity=0.250  Sum_probs=3.0

Q ss_pred             hhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHH
Q 015075          326 TITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL  363 (413)
Q Consensus       326 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~  363 (413)
                      ..++.+.+.++..+++.|..+..+...+-.+|-..|..
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~  302 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSV  302 (309)
T ss_dssp             --HHHH--------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999888877777766665555444443

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF12832 MFS_1_like: MFS_1 like family

Probab=86.53  E-value=8.9  Score=26.76  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHH
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLM  292 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~  292 (413)
                      ..+.-+..+++..+.|.++||.+|++.....
T Consensus        41 ~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   41 SAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            3445556778899999999999998876553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=86.33  E-value=5  Score=37.81  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=50.2

Q ss_pred             HHhhhhhhhhheecccccccc---hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcc
Q 015075          321 MCVTGTITVATIYAPEIYPTS---ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF  395 (413)
Q Consensus       321 ~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (413)
                      ++.++.=+....+..|.++++   .|.......+..-++|+.+++.+.+++-+..+....|.+..+..+++.+..+.-
T Consensus        45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            333333334455566766654   577778888999999999999888888777777776776666666665544443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=83.89  E-value=4  Score=38.09  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccccccc
Q 015075          376 LAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      ..+++.+...+++.....++.+|..
T Consensus       216 gy~~fwg~~~~vat~Lv~~~kke~~  240 (510)
T KOG3574|consen  216 GYLWFWGALFIVATTLVALLKKEND  240 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3456677777877777777655443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.87  E-value=31  Score=33.43  Aligned_cols=99  Identities=11%  Similarity=0.046  Sum_probs=64.3

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhh
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTT  345 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  345 (413)
                      ...-.+.+++++.+.|+++.|..++++...-..+-..+... |.+.....-...++.....+.--..|.+|..+++.+.+
T Consensus        60 Y~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~  138 (461)
T KOG3098|consen   60 YAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIER  138 (461)
T ss_pred             HHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHH
Confidence            33445677889999999999998888766555444443333 22222222222222222223334468999999999999


Q ss_pred             HHHHHHhhhhhhHhHHHHHH
Q 015075          346 GFGVASSLGKVGGMVCPLVA  365 (413)
Q Consensus       346 ~~g~~~~~~~~~~~~~p~~~  365 (413)
                      ..++..+++..+.+.+..+.
T Consensus       139 Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  139 NISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHHHHHHHHHHHHHhhhHhh
Confidence            99999999998887776544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=83.11  E-value=1.5  Score=31.33  Aligned_cols=43  Identities=12%  Similarity=0.122  Sum_probs=37.4

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSL   44 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l   44 (413)
                      ++|++....+.++..+++.+..+++...+..+.+++..+++.+
T Consensus        41 L~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   41 LVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            4688888888888888899999999999999999999988765

Note that many members are hypothetical proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		5e-04

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 146/388 (37%), Gaps = 84/388 (21%)
Query: 2   LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGL--------LSSFSPN---------YV-S 43
           ++G    G  S+ +GRR S    A++  ++G+         +S +P+         YV  
Sbjct: 69  IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128
Query: 44  LVIFRCXXXXXXXXXXXXXA-YFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVV--- 99
            VI+R                Y  E  P   RG+ +V+ + F     IF   L + V   
Sbjct: 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK-LVSFNQF---AIIFGQLLVYCVNYF 184
Query: 100 ---------MTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMA 150
                    +    WR++ A   +P+   L+     PESPR+L ++ +   A  IL K+ 
Sbjct: 185 IARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIM 244
Query: 151 FVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIR 210
                    G  ++ +A++E +        H L   RK   +L        ++F   +I 
Sbjct: 245 ---------GNTLATQAVQEIK--------HSLDHGRKTGGRL--------LMFGVGVIV 279
Query: 211 TTLLLWVL--FFA-NVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASL 267
             ++L +   F   NV  YY   +              K L A  S D +L +   I  +
Sbjct: 280 IGVMLSIFQQFVGINVVLYYAPEVF-------------KTLGA--STDIAL-LQTIIVGV 323
Query: 268 AELPGLILSAIIVDKIGRKLSMVLMFVSACI--FLLPLVFHQSA---VVTTVLLFGVRMC 322
             L   +L+ + VDK GRK   ++  +   I  F L   F+  A   V    +LF V   
Sbjct: 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF 383
Query: 323 VTGTITVATIYAPEIYPTSARTTGFGVA 350
                 V  +   EI+P + R     +A
Sbjct: 384 AMSWGPVCWVLLSEIFPNAIRGKALAIA 411

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-07

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 58/410 (14%), Positives = 117/410 (28%), Gaps = 70/410 (17%)

Query: 3   LGAYSWGIISDNYGRRKSFLGIAMV-----TSVAGLLSSFSPNYVSLVIFRCFVGVGLG- 56
              +  G +SD    R  FL   ++         G +   + +   + +     G   G 
Sbjct: 77  FSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 135

Query: 57  GVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVP 115
           G P      + +     RG  +   +     G      L  + M   N W   L   +  
Sbjct: 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195

Query: 116 SFAL----LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKEN 171
           +  +           P+S      +    D      + A    T     +          
Sbjct: 196 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM---------- 245

Query: 172 EESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL 231
               +L +  +  +            ++ F+     L+R  +L W   +           
Sbjct: 246 --QYVLPNKLLWYIA----------IANVFV----YLLRYGILDWSPTYL---------- 279

Query: 232 LTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI---GRKLS 288
                         +V H    K +  Y     A    +PG +L   + DK+    R  +
Sbjct: 280 -------------KEVKHFALDKSSWAYFLYEYAG---IPGTLLCGWMSDKVFRGNRGAT 323

Query: 289 MVLM--FVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTG 346
            V     V+    +  +    +  V  + +  +   + G + +  ++A E+ P  A  T 
Sbjct: 324 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA 383

Query: 347 FGVASSLGKVGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLF 395
            G     G +GG V    +    V         ++     +LA+   ++ 
Sbjct: 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.98
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.93
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.38
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.24
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.17
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.11
2xut_A	524	Proton/peptide symporter family protein; transport	99.04
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.84

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=7.6e-45  Score=354.56  Aligned_cols=373  Identities=19%  Similarity=0.271  Sum_probs=261.4

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHh------------------hcccHHHHHHHHHHhhhcccch-hHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSS------------------FSPNYVSLVIFRCFVGVGLGGV-PVFL   62 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~------------------~a~~~~~l~~~R~l~G~~~g~~-~~~~   62 (413)
                      ++|++++|+++||+|||+++.++.+++.+++++++                  +++|+++++++|+++|+|.|+. +...
T Consensus        69 ~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~  148 (491)
T 4gc0_A           69 IIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSP  148 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999998                  4789999999999999999986 6778


Q ss_pred             HHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHhhHHHHHHHHHhhcCCCCchHHh
Q 015075           63 AYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMT--------RLNWRWLLAFSSVPSFALLLFYGLAPESPRYLC  134 (413)
Q Consensus        63 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~~~~~l~~~l~~--------~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~  134 (413)
                      .|++|++|+++||+..++.+.++..|.++++.++.....        ..+||+.+.+..++.++..+..+++||||+|+.
T Consensus       149 ~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~  228 (491)
T 4gc0_A          149 MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLM  228 (491)
T ss_dssp             HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHH
T ss_pred             HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHH
Confidence            999999999999999999999999999999888877643        246999999999999888889999999999999


Q ss_pred             hccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHH
Q 015075          135 AKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLL  214 (413)
Q Consensus       135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (413)
                      .|++.+++++.+++....+..           +.+..+.++..++             .++.. .....+..+.  ....
T Consensus       229 ~~~~~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~--~~~~  281 (491)
T 4gc0_A          229 SRGKQEQAEGILRKIMGNTLA-----------TQAVQEIKHSLDH-------------GRKTG-GRLLMFGVGV--IVIG  281 (491)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-------------HHHHT-THHHHSCCTH--HHHH
T ss_pred             HcCchhHHHHhHHHhcCCchh-----------HHHHHHHHHHHHh-------------hhhhh-hHHHHhcccH--HHHH
Confidence            999999999988876543210           0011000000000             00000 0111111111  1112


Q ss_pred             HHHHHHHHHHHhhhHHhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHH
Q 015075          215 LWVLFFANVFSYYGAVLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV  294 (413)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~  294 (413)
                      .+...+.+...++....+.+.+...           .............+.++..+++.+++++++||+|||+..+.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~  350 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL  350 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchH
Confidence            2222222222222222222211100           01111222334556677788899999999999999998887766


Q ss_pred             HHHHHHHHHHh----cchhHHH-HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          295 SACIFLLPLVF----HQSAVVT-TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       295 ~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      ...+.++.+..    ....... ....+....+..+..++.+.+.+|++|++.|+++.|+++++++++++++|.+.+.+.
T Consensus       351 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~  430 (491)
T 4gc0_A          351 GMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD  430 (491)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65554443321    1122222 222222333444556788999999999999999999999999999999998877664


Q ss_pred             hc------cchhHHHHHHHHHHHHHHHHhhcccccccCcchhhhhhhhc
Q 015075          370 TS------CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVDAIE  412 (413)
Q Consensus       370 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l~~~~~~~~  412 (413)
                      +.      .+...++++++++++++.+..+++.||||||++||.++-.|
T Consensus       431 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          431 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            42      22345678899999999998988999999999999875443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.98  E-value=5.9e-31  Score=253.35  Aligned_cols=344  Identities=14%  Similarity=0.178  Sum_probs=229.1

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhh----cccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSF----SPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~----a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .++++++|+++||+|||+++..+.++++++.+++++    ++|++.++++|+++|++.|.. +...+++.|++|+++|++
T Consensus        76 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~  155 (451)
T 1pw4_A           76 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  155 (451)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred             HHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhH
Confidence            367889999999999999999999999999999999    999999999999999998865 677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMTRLN-WRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~~~~-Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      .+++.+.+..+|.++++.+++.+.+..| ||+.|++.+++.++. ++..+++||+|+....+.+.++             
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  222 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------  222 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------
Confidence            9999999999999999999998888888 999999988877654 4556778998874221110000             


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccch--hhhhccchhhhHHHHHHHHHHHHHHHhhhHHhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSS--FFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLL  232 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (413)
                                +++.+++.+++   ++            .+.....  .+..++.+...   ......+.....++....+
T Consensus       223 ----------~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  274 (451)
T 1pw4_A          223 ----------KNDYPDDYNEK---AE------------QELTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDW  274 (451)
T ss_dssp             ----------CCC----------------------------CCTHHHHHHTSSCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cccccccchhh---hh------------cccccccchHHHHHcCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence                      00000000000   00            0000001  12222222211   1222222222222222222


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHh--ChhHHHHHHHHHHH-HHHHHHHhc--c
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKLSMVLMFVSAC-IFLLPLVFH--Q  307 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~-~~~~~~~~~--~  307 (413)
                      .+.+...       .++.+.   ...........++.+++.++.+++.||+  |||+.+..+..... +.++.+...  .
T Consensus       275 ~~~~~~~-------~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (451)
T 1pw4_A          275 SPTYLKE-------VKHFAL---DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG  344 (451)
T ss_dssp             HHHHBTT-------BSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             HHHHHHH-------hcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence            2222111       111111   1122334455667788999999999999  99988776655444 333333332  1


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhh-hHhHHHHHHHHHhhccchhHHHHHHHHHHH
Q 015075          308 SAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKV-GGMVCPLVAVGLVTSCHLRLAVILFEVVFV  386 (413)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~  386 (413)
                      +........+...++..+..+..+.+..|.+|++.|+++.|+.+.+.++ ++.++|.+.+.+.+..+....+++.+++.+
T Consensus       345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  424 (451)
T 1pw4_A          345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI  424 (451)
T ss_dssp             CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3333333333444444455566678899999999999999999999999 999999999999888777777777777777


Q ss_pred             HHHHHhhccc
Q 015075          387 LAIASSLLFP  396 (413)
Q Consensus       387 ~~~~~~~~~~  396 (413)
                      ++.+...++.
T Consensus       425 ~~~~~~~~~~  434 (451)
T 1pw4_A          425 LAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766666543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=5.6e-28  Score=231.68  Aligned_cols=316  Identities=11%  Similarity=0.042  Sum_probs=210.3

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLS---SFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~---~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~   77 (413)
                      .++++++|+++||+|||+++..+.++++++.++.   ++++|++.+++.|+++|++.|.. +...+++.|++|+++|++.
T Consensus        75 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  154 (438)
T 3o7q_A           75 FIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR  154 (438)
T ss_dssp             HTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred             HHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence            4688999999999999999999999999999999   89999999999999999999875 6778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-cCCC-------------------------hHHHHHHhhHHHHHHHHHh--hcCCCC
Q 015075           78 MVALSAFWTAGTIFEASLAWVVM-TRLN-------------------------WRWLLAFSSVPSFALLLFY--GLAPES  129 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~-~~~~-------------------------Wr~~f~~~~i~~~~~~~~~--~~~pEs  129 (413)
                      +++.+.+..+|.++++.+++.+. +..+                         ||+.|++.+++.++..+..  ...||+
T Consensus       155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (438)
T 3o7q_A          155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPAL  234 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999998887 5544                         9999987776665543332  334655


Q ss_pred             chHHhhccChHHHHHHHHHHHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhh
Q 015075          130 PRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLI  209 (413)
Q Consensus       130 p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (413)
                      ++..   +                  +        +   ++ +.                     .....++.+++.+..
T Consensus       235 ~~~~---~------------------~--------~---~~-~~---------------------~~~~~~~~~~~~~~~  260 (438)
T 3o7q_A          235 QSDN---H------------------S--------D---AK-QG---------------------SFSASLSRLARIRHW  260 (438)
T ss_dssp             TTTC---C------------------C--------C---SS-TT---------------------SHHHHHHHHTTCSHH
T ss_pred             cccc---c------------------c--------c---cc-cc---------------------chhhhHHHHHhChHH
Confidence            4310   0                  0        0   00 00                     000112222322222


Q ss_pred             hHHHHHHHHHHHHHHHhhhHH-hhhhh-ccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhH
Q 015075          210 RTTLLLWVLFFANVFSYYGAV-LLTSK-LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL  287 (413)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~  287 (413)
                      +........   ....++... +...+ +..        .++.+.   ........+..+..+++.++.++++||+|||+
T Consensus       261 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  326 (438)
T 3o7q_A          261 RWAVLAQFC---YVGAQTACWSYLIRYAVEE--------IPGMTA---GFAANYLTGTMVCFFIGRFTGTWLISRFAPHK  326 (438)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--------STTCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHhhhc--------cCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            222222111   111111111 11111 110        011111   11122334456677889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHH
Q 015075          288 SMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVG  367 (413)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~  367 (413)
                      .+..+.+...+.++.+....+... ....+...++.....+..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          327 VLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence            888777766655554444443332 22233344555556677888888999987 899998887 788999999999999


Q ss_pred             Hhhccc-hhHHHHHHHHHHHHH
Q 015075          368 LVTSCH-LRLAVILFEVVFVLA  388 (413)
Q Consensus       368 l~~~~~-~~~~~~~~~~~~~~~  388 (413)
                      +.+..+ ....+++..++.++.
T Consensus       404 l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          404 VSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHH
Confidence            988877 555555544444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=4e-27  Score=229.27  Aligned_cols=375  Identities=10%  Similarity=-0.020  Sum_probs=206.5

Q ss_pred             ccccchhhHhhhh-cCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCC--cchH
Q 015075            2 LLGAYSWGIISDN-YGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSH--RGRW   77 (413)
Q Consensus         2 ~~G~~~~g~l~Dr-~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~--Rg~~   77 (413)
                      .++++++|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|.. +...+++.|++|+++  |+..
T Consensus        68 ~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  147 (491)
T 4aps_A           68 YLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG  147 (491)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHH
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceee
Confidence            3678899999999 89999999999999999999999999999999999999998875 677899999999999  6777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhc-CCCC----chHHhhccChHHHHHHHHH----
Q 015075           78 MVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGL-APES----PRYLCAKARTVDAHRILEK----  148 (413)
Q Consensus        78 ~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~-~pEs----p~~l~~~~~~~~a~~~~~~----  148 (413)
                      .+.++...++|..++|.+++.+.+..|||+.|++.++..++..+...+ .|+.    ++.-.++.+.++.++..++    
T Consensus       148 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  227 (491)
T 4aps_A          148 FSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA  227 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH
Confidence            888899999999999999999988899999999887666544333222 1211    1100011122222222211    


Q ss_pred             ----------HHHHcCCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHH
Q 015075          149 ----------MAFVNQTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVL  218 (413)
Q Consensus       149 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (413)
                                ....++.+  .+     +.............   ......   ..+.....  ....++. ......+..
T Consensus       228 l~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~--~~~~~~~-~~~~~~~~~  291 (491)
T 4aps_A          228 VAGFIAIIVVMNLVGWNS--LP-----AYINLLTIVAIAIP---VFYFAW---MISSVKVT--STEHLRV-VSYIPLFIA  291 (491)
T ss_dssp             CHHHHHHHHHHHHHSSCC--TT-----HHHHHHHHHHHHHH---HHHHHH---HC--------------C-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcc--cc-----cchhhhhHHHHHHH---HHHHHH---Hhhccccc--HHHHHHH-HHHHHHHHH
Confidence                      01111100  00     00000000000000   000000   00000000  0000011 111111111


Q ss_pred             HHHHHHHhhhH-HhhhhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHH-----HH
Q 015075          219 FFANVFSYYGA-VLLTSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LM  292 (413)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~-----~~  292 (413)
                      .+.....+... ..+..+...        ..+......+..   .....+..+++..+.+++.||+|||+...     .+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          292 AVLFWAIEEQGSVVLATFAAE--------RVDSSWFPVSWF---QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             HHHHHHHHGGGGTHHHHHHHH--------SCCCSSSCSGGG---TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHH--------HhccCccCHHHH---hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            11111111111 111111110        011111111211   12334455667788899999999985433     34


Q ss_pred             HHHHHHHHHHHHhc---------chhHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhhHhHHHH
Q 015075          293 FVSACIFLLPLVFH---------QSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPL  363 (413)
Q Consensus       293 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~  363 (413)
                      .+...+....+...         .+........+...++.....+..+.+..|.+|++.|+++.|+.+...++|+.++|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~  440 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ  440 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333333222221         122222222333333333445667889999999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCcch
Q 015075          364 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGREL  404 (413)
Q Consensus       364 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~l  404 (413)
                      +.+.+.+ .+....+..++++++++.+..+++.++++++..
T Consensus       441 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (491)
T 4aps_A          441 LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ  480 (491)
T ss_dssp             HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred             HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8775544 345566777777777777777777777766533

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.93  E-value=3.2e-26  Score=215.08  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=117.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA   80 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   80 (413)
                      .++++++|+++||+|||+++..+.++.+++.++.++++|++.+++.|+++|++.+.. +...+++.|++|+++|++.++.
T Consensus        49 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (375)
T 2gfp_A           49 GVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSL  128 (375)
T ss_dssp             HHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHH
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999998865 6778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHH-HhhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLL-FYGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~-~~~~~pEsp~  131 (413)
                      .+....+|..+++.+++.+.+..+||+.|++.++..++..+ ..+.+||+|+
T Consensus       129 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          129 LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            99999999999999999988888999999988887766544 5566788764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=3.5e-25  Score=211.10  Aligned_cols=344  Identities=15%  Similarity=0.100  Sum_probs=192.2

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHH---HHHhhcccHH-HHHHHHHHhhhcccch-hHHHHHHHhhccC--CCc
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAG---LLSSFSPNYV-SLVIFRCFVGVGLGGV-PVFLAYFLEFVPV--SHR   74 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~---~~~~~a~~~~-~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~--~~R   74 (413)
                      .++++++|+++||+|||+++..+..+++++.   ...++++... .+...|++.|++.|.. +...+...++.++  ++|
T Consensus        57 ~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  136 (417)
T 2cfq_A           57 LLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS  136 (417)
T ss_dssp             HHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc
Confidence            4688999999999999999998888775532   2223333221 2445677777765542 2222333344433  356


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           75 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        75 g~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      +...+.......+|..++|.+++.+.+ .+||+.|++.+++.++.....++.||+|+.   +.+.+              
T Consensus       137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------  198 (417)
T 2cfq_A          137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA--------------  198 (417)
T ss_dssp             TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS--------------
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc--------------
Confidence            777777777888999999999888765 589999998877765555554444443310   00000              


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHH-hhh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAV-LLT  233 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  233 (413)
                                +++ +  +++    +              +.....++.+++++........   .+.....++... .+.
T Consensus       199 ----------~~~-~--~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  244 (417)
T 2cfq_A          199 ----------NAV-G--ANH----S--------------AFSLKLALELFRQPKLWFLSLY---VIGVSCTYDVFDQQFA  244 (417)
T ss_dssp             ----------SSS-S--SCC----C--------------CCCHHHHHHHTTCHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             ----------ccc-c--ccc----c--------------cccHHHHHHHhcCCchhhHHHH---HHHHHHHHHHHHHHHH
Confidence                      000 0  000    0              0000111222222211111111   111111111110 111


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHH
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTT  313 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (413)
                      .++...        ++..............+..+...++.++.++++||+|||+.+..+.+...+....+...++.....
T Consensus       245 ~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  316 (417)
T 2cfq_A          245 NFFTSF--------FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV  316 (417)
T ss_dssp             HHHHHT--------SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHH--------HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            111100        000000011111223344456677889999999999999988776665554444333333332222


Q ss_pred             HHHHHHHHHhhhhhhhhheecccccccchhhhHHHHH-HhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHh
Q 015075          314 VLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASS  392 (413)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  392 (413)
                      .......++.....+..+.+.+|.+|++.|+++.++. +..+++|++++|.+.+.+.+..+....+.+.+++++++.+..
T Consensus       317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~  396 (417)
T 2cfq_A          317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            2222222222223344577999999999999999996 777889999999999988876665566777777777777777


Q ss_pred             hcccccccCcchh
Q 015075          393 LLFPFETMGRELK  405 (413)
Q Consensus       393 ~~~~~et~~~~l~  405 (413)
                      +++.||+++.++-
T Consensus       397 ~~~~~~~~~~~~~  409 (417)
T 2cfq_A          397 VFTLSGPGPLSLL  409 (417)
T ss_dssp             TTSSCCSCTTCSS
T ss_pred             HhhhcCCCchHHH
Confidence            7777887765443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.92  E-value=3.4e-24  Score=210.31  Aligned_cols=123  Identities=14%  Similarity=0.210  Sum_probs=109.1

Q ss_pred             ccccchhhHhhhhc-CChHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHH
Q 015075            2 LLGAYSWGIISDNY-GRRKSFLGIAMVTSVAGLLSSFSP-NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWM   78 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~-Grr~~~~~~~~l~~~~~~~~~~a~-~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~   78 (413)
                      .+++++.|+++||+ |||+++..+.++++++.++.++++ +++.+++.|+++|++.|.. +...+++.|++|+++|++..
T Consensus        68 ~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~  147 (524)
T 2xut_A           68 YFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ  147 (524)
T ss_dssp             HHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHH
Confidence            36788999999999 999999999999999999999999 9999999999999998875 77789999999999998777


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHHhh
Q 015075           79 VA---LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLFYG  124 (413)
Q Consensus        79 ~~---~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~~~  124 (413)
                      +.   .....++|..+++.+++.+.+..|||+.|++.++..++..+..+
T Consensus       148 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          148 KAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            66   88899999999999999888889999999988877665544433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.38  E-value=1.2e-11  Score=118.32  Aligned_cols=140  Identities=16%  Similarity=0.057  Sum_probs=105.6

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF----HQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      ..+..+...++.++.|+++||+|||+.+..+.++..+..+...+    .++........+..+++.....+...++.+|.
T Consensus        68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~  147 (451)
T 1pw4_A           68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  147 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence            34556667788999999999999999988887777665555544    44444444444444455555567778899999


Q ss_pred             cccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHhhcccccccC
Q 015075          338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETMG  401 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~  401 (413)
                      +|++.|+.+.|+.+....+|.+++|.+.+.+.+..+ +...+++.+++.++..+..++..||+..
T Consensus       148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            999999999999999999999999999888777776 6677777777777666666666667644

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.24  E-value=3.4e-10  Score=107.74  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=83.7

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          261 DVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPL---VFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       261 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      ......+...++.++.|+++||+|||+.+..+.+...+..+..   ...++.+......+..+++.....+....+.+|.
T Consensus        66 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~  145 (438)
T 3o7q_A           66 IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL  145 (438)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence            3445556667789999999999999999988877766655544   3344444444444444555555566778899999


Q ss_pred             cccchhhhHHHHHHhhhhhhHhHHHHHHHHHh
Q 015075          338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLV  369 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~  369 (413)
                      +|++.|+.+.++.+....+|..++|.+.+.+.
T Consensus       146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888776

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.21  E-value=3.3e-10  Score=109.66  Aligned_cols=136  Identities=12%  Similarity=0.078  Sum_probs=100.8

Q ss_pred             HHHHHhhhhhHHHHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheeccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDK-IGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPT  340 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  340 (413)
                      .....++..++.++.|+++|| +|||+.+..+.+...+..+.....++........+..+++.....+....+.+|.+|+
T Consensus        60 ~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           60 MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            445566677889999999999 8999999888877766665555555544444444444455555567788899999999


Q ss_pred             ch--hhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccc
Q 015075          341 SA--RTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPF  397 (413)
Q Consensus       341 ~~--r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (413)
                      +.  |+.+.++.+....+|..++|.+.+.+.+..++...+++.++..+++.+...+..|
T Consensus       140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            88  8888888889999999999999998888777777777766666666555544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.17  E-value=1.2e-10  Score=108.56  Aligned_cols=141  Identities=16%  Similarity=0.027  Sum_probs=103.3

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhhhhhhhheecccccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTS  341 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  341 (413)
                      .....+...++.++.|+++||+|||+.+..+.+...+........++........+...++.....+....+.+|.+|++
T Consensus        41 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~  120 (375)
T 2gfp_A           41 MGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT  120 (375)
T ss_dssp             HHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH
Confidence            44555666778899999999999999888777766655554444444333333333444444445566788899999999


Q ss_pred             hhhhHHHHHHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccccCc
Q 015075          342 ARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGR  402 (413)
Q Consensus       342 ~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~  402 (413)
                      .|+.+.++.+....+|..++|.+.+.+.+..+....+++.+++.++..+...+..||++.+
T Consensus       121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            9999999999999999999999988887766666667777777766666566667787654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.11  E-value=6.3e-11  Score=112.36  Aligned_cols=129  Identities=14%  Similarity=0.112  Sum_probs=105.6

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHH-
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVA-   80 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-   80 (413)
                      +|.++.|+++||+|||+++..+.++.+++.++.+++++.+.+++..++.|++.+.. +....++.|.+|++.||+..++ 
T Consensus       274 ~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  353 (417)
T 2cfq_A          274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence            46788899999999999999888888888888888888888888888888876543 5556889999999999999888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH-hhcCCCCch
Q 015075           81 LSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF-YGLAPESPR  131 (413)
Q Consensus        81 ~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~-~~~~pEsp~  131 (413)
                      ++....+|..++|.+++.+.+..||+..|.+.++..++..+. ....||.++
T Consensus       354 ~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            477888999999999998888889999998877776665443 445666544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.04  E-value=3.5e-09  Score=103.32  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHhhhhhhhhheecccccc
Q 015075          262 VFIASLAELPGLILSAIIVDKI-GRKLSMVLMFVSACIFLLPLVFHQ-SAVVTTVLLFGVRMCVTGTITVATIYAPEIYP  339 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  339 (413)
                      .....+...++.++.|+++||+ |||+.+..+.+...+..+...... +........+..+++.....+....+.+|.+|
T Consensus        60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  139 (524)
T 2xut_A           60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD  139 (524)
T ss_dssp             HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence            3345556677889999999999 999998887776665555544444 44433333444444444556677889999999


Q ss_pred             cchhhhHHHH---HHhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhccc
Q 015075          340 TSARTTGFGV---ASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP  396 (413)
Q Consensus       340 ~~~r~~~~g~---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (413)
                      ++.|+...+.   .+...++|+.++|.+.+.+.+..+....+++.+++.+++.+...+..
T Consensus       140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  199 (524)
T 2xut_A          140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGR  199 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999776666   88888999999999888887766766677766666666555554433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.84  E-value=3.4e-08  Score=95.42  Aligned_cols=103  Identities=14%  Similarity=0.056  Sum_probs=75.4

Q ss_pred             HhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHh------------------cchhHHHHHHHHHHHHHhhhhh
Q 015075          266 SLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTVLLFGVRMCVTGTI  327 (413)
Q Consensus       266 ~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  327 (413)
                      .++.++|.++.|+++||+|||+.+..+.++..+..+...+                  ..+.....+.-+..+++..+..
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4466789999999999999999988877665544333221                  2233334445555556666667


Q ss_pred             hhhheecccccccchhhhHHHHHHhhhhhhHhHHHHHHHHH
Q 015075          328 TVATIYAPEIYPTSARTTGFGVASSLGKVGGMVCPLVAVGL  368 (413)
Q Consensus       328 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l  368 (413)
                      +....+.+|..|++.|+...++.+....+|...++.+...+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            78899999999999999999999888888877777665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 41/411 (9%), Positives = 98/411 (23%), Gaps = 48/411 (11%)

Query: 1   MLLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP----NYVSLVIFRCFVGVGL- 55
                +  G +SD    R       ++ +   L   F P    +   + +     G    
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 56  GGVPVFLAYFLEFVPVSHRGRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP 115
            G P      + +     RG  +   +     G      L  + M   N           
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH-------- 183

Query: 116 SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQTKLPPGILVSDKAIKENEESN 175
                                            +       +   +          +   
Sbjct: 184 -------------------------------AALYMPAFCAILVALFAFAMMRDTPQSCG 212

Query: 176 LLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSK 235
           L       +      ++      +   +F + ++   LL ++             +L   
Sbjct: 213 LPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS 272

Query: 236 LSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVS 295
            +         +  +  +     Y  +    L          +     G      +  V+
Sbjct: 273 PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM---SDKVFRGNRGATGVFFMTLVT 329

Query: 296 ACIFLLPLVFHQSAVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGK 355
               +  +    +  V  + +  +   + G + +  ++A E+ P  A  T  G     G 
Sbjct: 330 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 389

Query: 356 VGGMVC-PLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRELK 405
           +GG V    +    V         ++     +LA+   ++       R  +
Sbjct: 390 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.92
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.25
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.24

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.1e-30  Score=243.28  Aligned_cols=359  Identities=14%  Similarity=0.146  Sum_probs=221.7

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcch
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSP----NYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGR   76 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~----~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~   76 (413)
                      .+|++++|+++||+|||+++..+.++.+++.+++++++    +++.+++.|+++|++.|.. +....++.|++|+++|++
T Consensus        73 ~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~  152 (447)
T d1pw4a_          73 GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG  152 (447)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccc
Confidence            36789999999999999999999999999999988875    7789999999999998865 677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHhhHHHHHH-HHHhhcCCCCchHHhhccChHHHHHHHHHHHHHcC
Q 015075           77 WMVALSAFWTAGTIFEASLAWVVMT-RLNWRWLLAFSSVPSFAL-LLFYGLAPESPRYLCAKARTVDAHRILEKMAFVNQ  154 (413)
Q Consensus        77 ~~~~~~~~~~~G~~~~~~l~~~l~~-~~~Wr~~f~~~~i~~~~~-~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~~  154 (413)
                      .+++.+.+..+|..+++.++..+.. ..+||+.|++.+++.++. .+.+.+.+|+|+........++             
T Consensus       153 ~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  219 (447)
T d1pw4a_         153 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------  219 (447)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------
T ss_pred             cccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-------------
Confidence            9999999999999999988776554 458999999888777655 4555667777653211110000             


Q ss_pred             CCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhccchhhhHHHHHHHHHHHHHHHhhhHHh-hh
Q 015075          155 TKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVL-LT  233 (413)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  233 (413)
                                +++ +.++.++.. +           ++........+..+..+...   ......+......+.... ..
T Consensus       220 ----------~~~-~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  273 (447)
T d1pw4a_         220 ----------KND-YPDDYNEKA-E-----------QELTAKQIFMQYVLPNKLLW---YIAIANVFVYLLRYGILDWSP  273 (447)
T ss_dssp             ----------CCC--------------------------CCTHHHHHHTSSCHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------hhh-cccchhhcc-c-----------cccchhhHHHHHHHcCchHH---HHHHHhhhhhhhhhcchhhhh
Confidence                      000 000000000 0           00000011112222222211   111111222222222222 22


Q ss_pred             hhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHH---HHHHHHHh--cch
Q 015075          234 SKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSAC---IFLLPLVF--HQS  308 (413)
Q Consensus       234 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~---~~~~~~~~--~~~  308 (413)
                      ..+..        ..+.+   .........+..+..+++.++.|++.||.+||.......+...   ........  ..+
T Consensus       274 ~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (447)
T d1pw4a_         274 TYLKE--------VKHFA---LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN  342 (447)
T ss_dssp             HHBTT--------BSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             hhccc--------ccccc---cchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhccccc
Confidence            22211        11111   1122233445566678899999999999998754333222211   11111111  222


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhhhhh-HhHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 015075          309 AVVTTVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLGKVG-GMVCPLVAVGLVTSCHLRLAVILFEVVFVL  387 (413)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~  387 (413)
                      ........+...++..+..+..+.+..|.+|++.|+++.|+.+.+++++ .+.+|.+.+.+.+..+....++++.++.++
T Consensus       343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~  422 (447)
T d1pw4a_         343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  422 (447)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            3333333444444555556677888999999999999999999999985 566888889898888877777777777776


Q ss_pred             HHHHhhcccccccCcchhhhhhhh
Q 015075          388 AIASSLLFPFETMGRELKDTVDAI  411 (413)
Q Consensus       388 ~~~~~~~~~~et~~~~l~~~~~~~  411 (413)
                      +.++.+++.+ .++|+.+|..+|.
T Consensus       423 ~~~~~~~~~~-~~~~r~~~~~~e~  445 (447)
T d1pw4a_         423 AVILLIVVMI-GEKRRHEQLLQEL  445 (447)
T ss_dssp             HHHHHHHHHH-HHHHHHHGGGGGS
T ss_pred             HHHHHHHHHH-hccccHHHHHHhC
Confidence            6666665543 3344445555554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.8e-23  Score=193.75  Aligned_cols=346  Identities=15%  Similarity=0.044  Sum_probs=204.0

Q ss_pred             ccccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHH----HHHHHhhhcccch-hHHHHHHHhhccC--CCc
Q 015075            2 LLGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLV----IFRCFVGVGLGGV-PVFLAYFLEFVPV--SHR   74 (413)
Q Consensus         2 ~~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~----~~R~l~G~~~g~~-~~~~~~~~E~~p~--~~R   74 (413)
                      .++++++|+++||+|||++++.+.....++..+..+.++.....    +.+++.+.+.+.. ........+..++  +++
T Consensus        57 ~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (417)
T d1pv7a_          57 LLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS  136 (417)
T ss_dssp             HHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhh
Confidence            36789999999999999999999999999998888887766543    4444444444432 2222222222222  234


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHH-HHHHHHHhhcCCCCchHHhhccChHHHHHHHHHHHHHc
Q 015075           75 GRWMVALSAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVP-SFALLLFYGLAPESPRYLCAKARTVDAHRILEKMAFVN  153 (413)
Q Consensus        75 g~~~~~~~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~-~~~~~~~~~~~pEsp~~l~~~~~~~~a~~~~~~~~~~~  153 (413)
                      .+..+........|..+++.+++.+.+. +|++.+...... .+......+..+|+|+...++   ++            
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------  200 (417)
T d1pv7a_         137 NFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NA------------  200 (417)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HH------------
T ss_pred             HHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhh---hh------------
Confidence            5556677777888888888888877654 555555544444 445566667777776521100   00            


Q ss_pred             CCCCCCCccccchhhhhhhhccccccccccchhhhcchhhccccchhhhhcc-chhhhHHHHHHHHHHHHHHHhhhHHhh
Q 015075          154 QTKLPPGILVSDKAIKENEESNLLRDTHMLSMTRKITDKLKSGFSSFFMLFS-RKLIRTTLLLWVLFFANVFSYYGAVLL  232 (413)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (413)
                                     ++++.+.     .              .......... ++.........................
T Consensus       201 ---------------~~~~~~~-----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (417)
T d1pv7a_         201 ---------------VGANHSA-----F--------------SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF  246 (417)
T ss_dssp             ---------------HHSCCCC-----C--------------CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------hhhhccc-----c--------------cccccccccccccccchhhhhHHHHHHHHhhhcccccc
Confidence                           0000000     0              0000000111 111111111111111111111111111


Q ss_pred             hhhccCCCCccCccccccCCCCChhHHHHHHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhcchhHHH
Q 015075          233 TSKLSSGDNKCGSKVLHADKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVT  312 (413)
Q Consensus       233 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (413)
                      ......           .................+...++..+.+++.||.|||+.+..+.+...+..+.+...++.+..
T Consensus       247 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T d1pv7a_         247 FTSFFA-----------TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             HTTSSS-----------CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             cccccc-----------ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchh
Confidence            110000           000000111222344455667788889999999999999888877776666665555555444


Q ss_pred             HHHHHHHHHHhhhhhhhhheecccccccchhhhHHHHHHhhh-hhhHhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 015075          313 TVLLFGVRMCVTGTITVATIYAPEIYPTSARTTGFGVASSLG-KVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIAS  391 (413)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  391 (413)
                      ........++.....+....+..|.+|++.|+++.|+.+.+. .+|+.++|.+.+.+.|..+...++++++++.+++.++
T Consensus       316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  395 (417)
T d1pv7a_         316 VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI  395 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            444444444444556777888999999999999999876654 6899999999999999888878888888888888777


Q ss_pred             hhcccccccCcchhhhh
Q 015075          392 SLLFPFETMGRELKDTV  408 (413)
Q Consensus       392 ~~~~~~et~~~~l~~~~  408 (413)
                      ..++.++++..++++++
T Consensus       396 ~~~~l~~~~~~~~~r~~  412 (417)
T d1pv7a_         396 SVFTLSGPGPLSLLRRQ  412 (417)
T ss_dssp             HHHHSCCSSCTTHHHHH
T ss_pred             HHHhhcCCCccchhHhh
Confidence            77777777666665443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=9.2e-11  Score=109.45  Aligned_cols=139  Identities=16%  Similarity=0.054  Sum_probs=95.9

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhhhhhhhhheecccc
Q 015075          262 VFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFH----QSAVVTTVLLFGVRMCVTGTITVATIYAPEI  337 (413)
Q Consensus       262 ~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  337 (413)
                      .....++..++.++.|+++||+|||+.+..+.+...+..+.....    ++........+...++.....+....+..|.
T Consensus        65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~  144 (447)
T d1pw4a_          65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  144 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            344556667889999999999999999988877766554443321    2223333333344444444556677889999


Q ss_pred             cccchhhhHHHHHHhhhhhhHhHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHhhccccccc
Q 015075          338 YPTSARTTGFGVASSLGKVGGMVCPLVAVGLVTSC-HLRLAVILFEVVFVLAIASSLLFPFETM  400 (413)
Q Consensus       338 ~p~~~r~~~~g~~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~et~  400 (413)
                      +|++.|+.+.|+.+....+|+.++|.+.+.+.... ++...+++.+++.++..+..+++++|++
T Consensus       145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            99999999999999999999999998777655543 3445556666666655566665555543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=9.8e-12  Score=114.26  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=108.3

Q ss_pred             cccchhhHhhhhcCChHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcccch-hHHHHHHHhhccCCCcchHHHHH
Q 015075            3 LGAYSWGIISDNYGRRKSFLGIAMVTSVAGLLSSFSPNYVSLVIFRCFVGVGLGGV-PVFLAYFLEFVPVSHRGRWMVAL   81 (413)
Q Consensus         3 ~G~~~~g~l~Dr~Grr~~~~~~~~l~~~~~~~~~~a~~~~~l~~~R~l~G~~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~   81 (413)
                      ++..+.+++.||+|||+.+..+.++.+++.++.++.++.+.+++.-++.|++.+.. +...+++.|.+|+++||+..++.
T Consensus       274 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (417)
T d1pv7a_         274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC  353 (417)
T ss_dssp             HHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             cchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999998865 67778999999999999999975


Q ss_pred             -HHHHHHHHHHHHHHHHHHhcCCChHHHHHHhhHHHHHHHHH-hhcCC
Q 015075           82 -SAFWTAGTIFEASLAWVVMTRLNWRWLLAFSSVPSFALLLF-YGLAP  127 (413)
Q Consensus        82 -~~~~~~G~~~~~~l~~~l~~~~~Wr~~f~~~~i~~~~~~~~-~~~~p  127 (413)
                       +....+|..+++.+++.+.+..||+..|++.++..++..++ .+.++
T Consensus       354 ~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         354 FCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             56778999999999999999999999998887777655443 34443