Citrus Sinensis ID: 015085
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | 2.2.26 [Sep-21-2011] | |||||||
| P54453 | 366 | Uncharacterized protein Y | yes | no | 0.525 | 0.592 | 0.312 | 2e-24 | |
| Q66GP9 | 561 | NO-associated protein 1, | no | no | 0.583 | 0.429 | 0.25 | 7e-13 | |
| Q6YPG5 | 547 | Putative nitric oxide syn | no | no | 0.590 | 0.446 | 0.258 | 1e-12 | |
| C4QZZ7 | 576 | Genetic interactor of pro | yes | no | 0.648 | 0.465 | 0.244 | 7e-09 | |
| C5DEU6 | 535 | Genetic interactor of pro | yes | no | 0.629 | 0.485 | 0.228 | 2e-08 | |
| A7TQC5 | 551 | Genetic interactor of pro | N/A | no | 0.612 | 0.459 | 0.234 | 9e-08 | |
| C4XXL5 | 619 | Genetic interactor of pro | N/A | no | 0.520 | 0.347 | 0.244 | 3e-07 | |
| A5DDR3 | 599 | Genetic interactor of pro | N/A | no | 0.501 | 0.345 | 0.235 | 4e-07 | |
| Q09700 | 491 | Uncharacterized protein C | yes | no | 0.690 | 0.580 | 0.247 | 1e-06 | |
| Q8NC60 | 698 | Nitric oxide-associated p | yes | no | 0.288 | 0.170 | 0.283 | 7e-06 |
| >sp|P54453|YQEH_BACSU Uncharacterized protein YqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 135/256 (52%), Gaps = 39/256 (15%)
Query: 154 VVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSF 213
V+C RC L++Y +++DV+ L D DF + L S+V+ +VD DF+GS+
Sbjct: 34 VICQRCFRLKNYNEIQDVS----LTDDDFLNI----LHGIGETDSLVVKIVDIFDFNGSW 85
Query: 214 PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273
+ ++V G P ++LV K D+LP SL R W+++ A+E
Sbjct: 86 INGLQRLV----------------GGNP-ILLVGNKADILPKSLKRERLIQWMKREAKEL 128
Query: 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333
G+ K + VSA + G++ +ID + + +V+ +G N GKST +N I K V
Sbjct: 129 GL-KPVDVFLVSAGRGQGIREVIDAIEHYRNGK-DVYVVGCTNVGKSTFINRIIKEVS-- 184
Query: 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393
GEE I T + PGTTL + + L + L+DTPG+++ +Q+ + +++
Sbjct: 185 ----GEEDII----TTSQFPGTTLDAIEIP--LDDGSSLYDTPGIINNHQMAHYVNKKDL 234
Query: 394 KLVNINKELKPRTYRI 409
K+++ KELKPRT+++
Sbjct: 235 KILSPKKELKPRTFQL 250
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Binds GTP and GDP. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q66GP9|NOA1_ARATH NO-associated protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NOA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 130/312 (41%), Gaps = 71/312 (22%)
Query: 81 LTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEA 140
++ C GCG +Q ++ PG+ LV +E
Sbjct: 105 VSCCYGCGAPLQTSDVDSPGFV-------------------------------DLVTYEL 133
Query: 141 ENETSEVKKHE--KPVVCARCHALRHYGKVKDVTVENLLP---DFDFDHTVGRKLMSASG 195
+ KKH + ++C RC L H + V P F + KL
Sbjct: 134 K------KKHHQLRTMICGRCQLLSHGHMITAVGGNGGYPGGKQFVSADELREKLSHLRH 187
Query: 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255
+++++ +VD DF+GSF +V +V G P ++LV+TKIDLLP
Sbjct: 188 EKALIVKLVDIVDFNGSFLARVRDLV----------------GANP-IILVITKIDLLPK 230
Query: 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQ 315
WV + ++ + +H S+ G+ + ++ R +V+ +GA
Sbjct: 231 GTDMNCIGDWVVEVTMRKKLN-VLSVHLTSSKSLDGVSGVASEIQKEKKGR-DVYILGAA 288
Query: 316 NAGKSTLLNAIAKSV---DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372
N GKS +NA+ K++ D + K I ++ VPGTTLG +++ + + KL
Sbjct: 289 NVGKSAFINALLKTMAERDPVAAAAQKYKPI-----QSAVPGTTLGPIQINAFVGGE-KL 342
Query: 373 FDTPGL-LHPNQ 383
+DTPG+ LH Q
Sbjct: 343 YDTPGVHLHHRQ 354
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Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 3 EC: 9 |
| >sp|Q6YPG5|NOS_ORYSJ Putative nitric oxide synthase OS=Oryza sativa subsp. japonica GN=Os02g0104700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 131/313 (41%), Gaps = 69/313 (22%)
Query: 79 PKLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVF 138
P C GCG +Q + PGY VH A + LKK
Sbjct: 95 PSAAACYGCGAPLQTADEAAPGY----------------VHPA-----TYDLKK------ 127
Query: 139 EAENETSEVKKHE-KPVVCARCHALRHYGKVKDVTVENLLP---DFDFDHTVGRKLMSAS 194
+ H+ + V+C RC L H + V P F + KL
Sbjct: 128 ---------RHHQLRTVLCGRCKLLSHGHMITAVGGHGGYPGGKQFVSADQLRDKLSYLR 178
Query: 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
+++++ +VD DF+GSF +V D A N ++LV+TK+DLLP
Sbjct: 179 HEKALIIKLVDIVDFNGSFLARV----RDFAGANP-------------IILVITKVDLLP 221
Query: 255 SSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGA 314
WV + + ++ + +H S+ G+ +I ++ R +V+ +G+
Sbjct: 222 RDTDLNCIGDWVVEAVVKKKLN-VLSVHLTSSKSLVGVTGVISEIQQEKKGR-DVYILGS 279
Query: 315 QNAGKSTLLNAIAKSV---DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371
N GKS ++A+ +++ D + K I ++ VPGTTLG +++E L K
Sbjct: 280 ANVGKSAFISAMLRTMAYKDPVAAAAQKYKPI-----QSAVPGTTLGPIQIEAFL-GGGK 333
Query: 372 LFDTPGL-LHPNQ 383
L+DTPG+ LH Q
Sbjct: 334 LYDTPGVHLHHRQ 346
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Produces nitric oxide (NO) which is a messenger molecule involved in hormonal signaling and defense responses in plant. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 3 EC: . EC: 3 EC: 9 |
| >sp|C4QZZ7|GEP3_PICPG Genetic interactor of prohibitins 3, mitochondrial OS=Komagataella pastoris (strain GS115 / ATCC 20864) GN=GEP3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 141/348 (40%), Gaps = 80/348 (22%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPS-----QNLNKVRKSHLVHVANESEFSNSLKKGGLVVF 138
CP CGV++Q +P GY + P +N K L E ++ L
Sbjct: 61 CPSCGVVLQTEHPDKDGYCLLPKGERKVKNYQNELKEKLFLNVKREELADRLGH------ 114
Query: 139 EAENETSEVKK--HEKP-----VVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLM 191
E ++E+ + K ++KP +VC RC ++Y + D ++ P+ K++
Sbjct: 115 EVDSESLIIPKEMYQKPRTPKRLVCQRCFKSQNYSLI-DHSIREENPE--------HKIL 165
Query: 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKID 251
+ + ++ V+ A DF +++ T ++ V+TK D
Sbjct: 166 DEIPSNANIVHVLSAVDFPLGLSKELVNRFKPT-----------------QITYVITKSD 208
Query: 252 -LLPSSLSPTRFEHWVRQRAREDGISKIT-----KLHFVSAVKNWGLKSLIDDVVDLAGK 305
P L R ED + K+ K+ VS +NWGLK L+ +
Sbjct: 209 VFFPDKLGLQR----TGAAYFEDSLVKLVGADPRKVVLVSGKRNWGLKQLLSTL-----P 259
Query: 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----VSHLTEAPVPGTTLGIV 360
RG + +G N GKSTL+ +I G D +K VSHL P T +
Sbjct: 260 RGPNYFLGMTNTGKSTLIRSIV-------GKDYSKKQTENGPGVSHL-----PSFTRKPM 307
Query: 361 RVEGVLPAQAKLFDTPGLLHPNQITTRLTREE--QKLVNINKELKPRT 406
+ + + +L D PG PN + +EE + ++N+ K+LKP T
Sbjct: 308 KFK-MDNNSLELVDLPGYTAPNGGVYKYLKEENYRDILNV-KQLKPLT 353
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May be involved in the mitochondrial lipid metabolism. Pichia pastoris (strain GS115 / ATCC 20864) (taxid: 644223) |
| >sp|C5DEU6|GEP3_LACTC Genetic interactor of prohibitins 3, mitochondrial OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=GEP3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 117/307 (38%), Gaps = 47/307 (15%)
Query: 80 KLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFE 139
+ C CGV +Q+ N + G++ P + RK ++ FS L+ +
Sbjct: 20 RFVSCTSCGVTLQNNNVRGTGFYTPPKAQIE--RKRPVIEDLKYLLFSQDLQS-----LK 72
Query: 140 AENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSV 199
+E E K KP++C RC+ H+ N DF +++ A +
Sbjct: 73 SELSAEERPKKNKPLICKRCNDALHH---------NTFSKEDFRRYSMQEVYRHVPAGAD 123
Query: 200 VLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259
+ VV DF P ++ V + N P L+ K +P
Sbjct: 124 IYHVVPLTDF----PLQLNSAVLKDSRYNSALLLSKGDQVTPDKSLLQRK--------AP 171
Query: 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGK 319
F+ +R + + I SA K W ++S+ + R N + IG N+GK
Sbjct: 172 QFFKDMLRLKMNYNSNKSIA----FSASKGWNIQSVYSVL------RSNSFLIGCPNSGK 221
Query: 320 STLLNAIAK---SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI------VRVEGVLPAQA 370
STL+NA+ K S+ G + E IV + +P T + +V LP +
Sbjct: 222 STLVNALLKKFPSLKPSEGNNASEAEIVRGAGVSNIPNMTRDLQSYNIGSKVINDLPGYS 281
Query: 371 KLFDTPG 377
+ +PG
Sbjct: 282 TNYGSPG 288
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May be involved in the mitochondrial lipid metabolism. Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295) |
| >sp|A7TQC5|GEP3_VANPO Genetic interactor of prohibitins 3, mitochondrial OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=GEP3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 133/316 (42%), Gaps = 63/316 (19%)
Query: 81 LTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEA 140
L C CG+ +Q NP GY+ +P +V K + FS ++K + E
Sbjct: 24 LQACSSCGIKLQSKNPALIGYYTKPKP--LEVGKVETLEDVKYMLFSQDIQK----IKEI 77
Query: 141 ENETS-EVKKHEKP--VVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGAR 197
E+ T+ E +K+ P ++C RC H K DV DF + ++++ +
Sbjct: 78 EDGTTLEDEKNRIPHSLICKRCSDAVHQNKY-DV--------MDFKNCSLKEVIRSVPND 128
Query: 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKID--LLPS 255
++ + + FP V K + + +E+ VLV TK D L S
Sbjct: 129 KPIVSIASLPE----FPFHVNKNILENEKES---------------VLVFTKADQVLKTS 169
Query: 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQ 315
S + TR + + + ++ K+ VS++K W L L+ ++ R N + +G
Sbjct: 170 SATSTRLPIFFKDYFKYHLGLQVNKVLAVSSLKKWNLSGLLSNL------RNNSYFLGNP 223
Query: 316 NAGKSTLLNAIAKSVDAGR-----------GGDGEEKNIVSHLTEAPVPGTTL--GIVR- 361
N GKSTL+N++ + + + D + K HL +A + G + + R
Sbjct: 224 NVGKSTLMNSLIQRYNGTKLDFNSNISDDMVNDAQHK----HLRKAQLAGVSHIPNLTRE 279
Query: 362 VEGVLPAQAKLFDTPG 377
+G + +++D PG
Sbjct: 280 CQGYQVDKKRIYDLPG 295
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May be involved in the mitochondrial lipid metabolism. Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907) |
| >sp|C4XXL5|GEP3_CLAL4 Genetic interactor of prohibitins 3, mitochondrial OS=Clavispora lusitaniae (strain ATCC 42720) GN=GEP3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 103/262 (39%), Gaps = 47/262 (17%)
Query: 75 DEATPKLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLV---HVANESEFSNSLK 131
D PK C CGVL+Q+ + PG+++ P + + +++ +V H+A+ E L
Sbjct: 59 DAILPK---CSSCGVLLQNEDRSKPGFYLAPGSSRDFRKETDVVYEKHLASLEEADRDLL 115
Query: 132 KGGLVVFEAENETSEVKKHEKP---VVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGR 188
G + + K ++P V C RC +D + P F
Sbjct: 116 LNGAQGLQVSGQKETPKSQKQPANKVSCIRC---------RDSHYRSQFPLDQFAVAAVS 166
Query: 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVV 247
+M + A + + VV A DF S V + S PR + VV
Sbjct: 167 DVMHSIPAYANLAYVVSATDFPMSINEDVFRHRS------------------PREMQFVV 208
Query: 248 TKIDLL---PSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304
TK DL S S + + R + + +H VS +W + L D +
Sbjct: 209 TKNDLFFQKNSVASKYGLQFYQDYFWRMFNVP-VENVHCVSGTVDWNTEKLFDSL----- 262
Query: 305 KRGNVWAIGAQNAGKSTLLNAI 326
R N + IG N+GKSTL+ ++
Sbjct: 263 -RDNTYFIGCVNSGKSTLIQSL 283
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May be involved in the mitochondrial lipid metabolism. Clavispora lusitaniae (strain ATCC 42720) (taxid: 306902) |
| >sp|A5DDR3|GEP3_PICGU Genetic interactor of prohibitins 3, mitochondrial OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=GEP3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 52/259 (20%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLV---------HVANESEFSNSLKKGG 134
C CG+ +Q T+P PG++ P VRK +LV + ++S ++
Sbjct: 59 CNSCGITLQKTDPDRPGFYREPGTGQKLVRKENLVASNAYNGLDDDDLKLLLNSSGEEKD 118
Query: 135 LVVFEAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSAS 194
+ +F+ NE S K + + C RC + + ++ P D +M++
Sbjct: 119 ISLFKQRNEPSP-KVAPQSIQCIRCRE----AQFRSEYSQDEFPIESLD-----AIMTSL 168
Query: 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
+ ++ V+ AADF S +V S ++ V+TK DLL
Sbjct: 169 PPDAKLVYVISAADFPMSLDSRVFSYRSAL-----------------EILFVITKCDLLF 211
Query: 255 SSLSPTR------FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-RG 307
+L+ F+ + R+ G+S + S +W + +L+ + GK R
Sbjct: 212 PTLNLANKYGLPFFQDYF---YRKHGVSG-ENVVLTSGKIDWNIPTLLKN-----GKIRD 262
Query: 308 NVWAIGAQNAGKSTLLNAI 326
N + IG+ N+GKSTLL ++
Sbjct: 263 NSYLIGSVNSGKSTLLKSM 281
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May be involved in the mitochondrial lipid metabolism. Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746) |
| >sp|Q09700|YA29_SCHPO Uncharacterized protein C2F7.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.09c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 145/359 (40%), Gaps = 74/359 (20%)
Query: 83 VCPGCGVLMQDTNPKHPGYFIRP---SQNLNKVRKSHLV--HVANESEFSNSLKKGGLVV 137
C GCG +Q N GY I+P S +K S+L+ ++ ++ F+N+ K +
Sbjct: 6 FCRGCGQTLQSANESATGY-IKPLKLSGIFSKGSVSNLLKKNLDEQAIFNNAFKNLNPQI 64
Query: 138 FEAENETSEVKKHEKPV------VCARCHALRHYGKVKDVTV----ENLLPDFDFDHTVG 187
+ T+ HEK + C RCH L+ + +++ + + LPD
Sbjct: 65 KKHFPNTTSFPFHEKEIGRTDLLWCQRCHDLKFHSRIRPKELLQEPQTTLPDI------- 117
Query: 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVV 247
+ + + +S L++ V D E + + V +
Sbjct: 118 --ISTVNNDKSTCLII----------------QVIDVTEVIFQDFVSATQYTHFPVFHLF 159
Query: 248 TKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRG 307
T D+LP P + +W+ GIS + + S N + L+ + L RG
Sbjct: 160 THADVLP----PKK-PYWLFPGL---GISSKYAMLYTSHSFNL-VDKLLGRINPLLCSRG 210
Query: 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI----VRVE 363
+V+ +G N+GKSTLL +AK G+G + L ++ +PGTT I +
Sbjct: 211 HVYVVGEANSGKSTLLKTLAKR------GNGVFNEL---LLDSFLPGTTQAIKGYPTQYF 261
Query: 364 GVLPAQAK---LFDTPGL------LHPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411
G Q +FDTPG L P T LT K + NK+L KP YR++
Sbjct: 262 GSCFKQLSEGLIFDTPGYRGNLKSLLPWVDTKLLTSLVPKTRSRNKQLTSKPVQYRVRF 320
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q8NC60|NOA1_HUMAN Nitric oxide-associated protein 1 OS=Homo sapiens GN=NOA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 278 ITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS-VDAGRGG 336
+ + +SA +G++ LI + RG+V+ +GA NAGKSTL N + +S +G
Sbjct: 310 VRDVRLISAKTGYGVEELISALQRSWRYRGDVYLVGATNAGKSTLFNTLLESDYCTAKGS 369
Query: 337 DGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPN--QITTRLTREEQK 394
+ ++ +S P PGTTL +++ P ++F L + Q L+ +EQ
Sbjct: 370 EAIDRATIS-----PWPGTTLNLLKFPICNPTPYRMFKRHQRLKKDSTQAEEDLSEQEQN 424
Query: 395 LVNINKE 401
+N+ K+
Sbjct: 425 QLNVLKK 431
|
Involved in regulation of mitochondrial protein translation and respiration. Plays a role in mitochondria-mediated cell death. May act as a scaffolding protein or stabilizer of respiratory chain supercomplexes. Binds GTP. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| 449503485 | 568 | PREDICTED: uncharacterized protein YqeH- | 0.937 | 0.681 | 0.626 | 1e-140 | |
| 449448988 | 566 | PREDICTED: uncharacterized protein YqeH- | 0.937 | 0.683 | 0.623 | 1e-140 | |
| 224057138 | 609 | predicted protein [Populus trichocarpa] | 0.963 | 0.653 | 0.637 | 1e-138 | |
| 356538577 | 592 | PREDICTED: uncharacterized protein yqeH- | 0.941 | 0.657 | 0.640 | 1e-137 | |
| 297809289 | 597 | predicted protein [Arabidopsis lyrata su | 0.941 | 0.651 | 0.623 | 1e-135 | |
| 255581678 | 745 | conserved hypothetical protein [Ricinus | 0.876 | 0.485 | 0.664 | 1e-133 | |
| 4539440 | 605 | putative protein [Arabidopsis thaliana] | 0.941 | 0.642 | 0.609 | 1e-133 | |
| 18413362 | 597 | GTPase YqeH-like protein [Arabidopsis th | 0.939 | 0.649 | 0.608 | 1e-133 | |
| 225435640 | 584 | PREDICTED: uncharacterized protein yqeH- | 0.939 | 0.664 | 0.626 | 1e-133 | |
| 297746417 | 610 | unnamed protein product [Vitis vinifera] | 0.915 | 0.619 | 0.605 | 1e-131 |
| >gi|449503485|ref|XP_004162026.1| PREDICTED: uncharacterized protein YqeH-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/412 (62%), Positives = 323/412 (78%), Gaps = 25/412 (6%)
Query: 5 ARNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTNTAPPPLSS 64
AR +S S LK F++ ++S + +P+ + P S+ S SFSS+PT+
Sbjct: 4 ARKLSASNLKSFLSLRFISHLSSSPICSNPS--ILFPLPSTLSRSFSSKPTS------PQ 55
Query: 65 SLALTRDGNYDEATPKLT-VCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRK-SHLVHVAN 122
+L+L+RDGN+DE T + + VCPGCGV MQD+NPKHPG+FI+PS+ + R +HLV V +
Sbjct: 56 ALSLSRDGNFDETTSRFSLVCPGCGVHMQDSNPKHPGFFIKPSKKDSNYRLLTHLVPVDD 115
Query: 123 ESEFSNSLKKGGLVVFEAENETSEV---KKHEKPVVCARCHALRHYGKVKDVTVENLLPD 179
ESE S LK+G +V E E E +E +K +KP VC+RCH+LRHYGKVKD +VENLLPD
Sbjct: 116 ESECSEFLKRG--LVIEPEKEKTEEDVNEKPQKPTVCSRCHSLRHYGKVKDPSVENLLPD 173
Query: 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGN 239
FDF+HT+G +L+S +G RSVVL+VVDAADFDGSFP+KVA +VS + E N AWK+GKSGN
Sbjct: 174 FDFNHTLGGRLVSTTGTRSVVLIVVDAADFDGSFPKKVANLVSASIENNSAAWKQGKSGN 233
Query: 240 VPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299
VPRVVLVVTK DLLPSSLSP +FEHWVRQRARE GI+KIT LH VS++++WG+K+L++DV
Sbjct: 234 VPRVVLVVTKTDLLPSSLSPEKFEHWVRQRAREGGINKITSLHMVSSIRDWGIKNLVEDV 293
Query: 300 VDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI 359
++LAG RGNVWAIGAQNAGKSTL+N+I K V GG ++ LTEAPVPGTTLGI
Sbjct: 294 IELAGARGNVWAIGAQNAGKSTLINSIGKHV----GGK------ITQLTEAPVPGTTLGI 343
Query: 360 VRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKV 411
+RVEG+ PAQAKLFDTPGLL+P+QITTRLTREEQKLV+I+KELKPRTYRIKV
Sbjct: 344 IRVEGIFPAQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKV 395
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448988|ref|XP_004142247.1| PREDICTED: uncharacterized protein YqeH-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/412 (62%), Positives = 322/412 (78%), Gaps = 25/412 (6%)
Query: 5 ARNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTNTAPPPLSS 64
AR +S S LK F++ ++S + +P+ + P S+ S SFSS+PT+
Sbjct: 4 ARKLSASNLKSFLFLRFISHLSSSPICSNPS--ILFPLPSTLSRSFSSKPTS------PQ 55
Query: 65 SLALTRDGNYDEATPKLT-VCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRK-SHLVHVAN 122
+ +L+RDGN+DE T + + VCPGCGV MQD+NPKHPG+FI+PS+ + R +HLV V +
Sbjct: 56 AFSLSRDGNFDETTSRFSLVCPGCGVHMQDSNPKHPGFFIKPSKKDSNYRLLTHLVPVDD 115
Query: 123 ESEFSNSLKKGGLVVFEAENETSEV---KKHEKPVVCARCHALRHYGKVKDVTVENLLPD 179
ESE S LK+G +V E E E +E +K +KP VC+RCH+LRHYGKVKD +VENLLPD
Sbjct: 116 ESECSEFLKRG--LVIEPEKEKTEEDVNEKPQKPTVCSRCHSLRHYGKVKDPSVENLLPD 173
Query: 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGN 239
FDF+HT+G +L+S +G RSVVL+VVDAADFDGSFP+KVA +VS + E N AWK+GKSGN
Sbjct: 174 FDFNHTLGGRLVSTTGTRSVVLIVVDAADFDGSFPKKVANLVSASIENNSAAWKQGKSGN 233
Query: 240 VPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299
VPRVVLVVTK DLLPSSLSP +FEHWVRQRARE GI+KIT LH VS++++WG+K+L++DV
Sbjct: 234 VPRVVLVVTKTDLLPSSLSPEKFEHWVRQRAREGGINKITSLHMVSSIRDWGIKNLVEDV 293
Query: 300 VDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI 359
++LAG RGNVWAIGAQNAGKSTL+N+I K V GG ++ LTEAPVPGTTLGI
Sbjct: 294 IELAGARGNVWAIGAQNAGKSTLINSIGKHV----GGK------ITQLTEAPVPGTTLGI 343
Query: 360 VRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKV 411
+RVEG+ PAQAKLFDTPGLL+P+QITTRLTREEQKLV+I+KELKPRTYRIKV
Sbjct: 344 IRVEGIFPAQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKV 395
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057138|ref|XP_002299138.1| predicted protein [Populus trichocarpa] gi|222846396|gb|EEE83943.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 272/427 (63%), Positives = 327/427 (76%), Gaps = 29/427 (6%)
Query: 5 ARNI--SQSKLKPIFHESFL-------TKITSPYLQLHPTKALKAPTSSSSSSSFSSQPT 55
ARN+ S++KLKP+ SFL +K Y +P + PT ++ FSS+PT
Sbjct: 4 ARNLPASKTKLKPLLSLSFLVQSPLTPSKTHDSYCNFYP----QNPTKTNFLYFFSSKPT 59
Query: 56 NTAPPPLSS--SLALTRDGNYDEATPKLTVCPGCGVLMQDTNPKHPGYFIRPS-QNLNKV 112
N PP + SL LTRDGNYD+ATP TVCPGCGV MQ TNPKHPG++ PS ++ +
Sbjct: 60 NPNPPKHQTFPSLHLTRDGNYDDATPPATVCPGCGVHMQYTNPKHPGFYKEPSVKDPDYK 119
Query: 113 RKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEK------PVVCARCHALRHYG 166
+HLV ++ ESEF SLK+G V +++N ++ ++E PVVCARCH+LRHYG
Sbjct: 120 SDAHLVPISLESEFPGSLKRGFFVEPDSQNPDLDLAENESVLGKRPPVVCARCHSLRHYG 179
Query: 167 KVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAE 226
KVKD TVENLLP+FDF HTVGR+L+S+SGAR+VVL+VVDA DFDGSFP+KVAK+VSD+ E
Sbjct: 180 KVKDPTVENLLPEFDFYHTVGRRLVSSSGARTVVLLVVDAVDFDGSFPKKVAKLVSDSIE 239
Query: 227 ENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSA 286
EN AWKEGKSGNV R+VLVVTKIDLLPSSLSP FE WVR+RARE G S I K+H VS+
Sbjct: 240 ENFTAWKEGKSGNVARIVLVVTKIDLLPSSLSPLGFEQWVRRRAREGGASVIKKVHLVSS 299
Query: 287 VKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH 346
V+NWGLK+L +DV++LAG RG+VWA+GAQNAGKSTLLNA+AK V G E K VS+
Sbjct: 300 VRNWGLKNLAEDVIELAGARGHVWAVGAQNAGKSTLLNAMAKCV-----GGNERK--VSY 352
Query: 347 LTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRT 406
LTEAPVPGTTLGIVRVEGVLP QAKLFDTPGLL+P QITTRL REEQ+LV+I+KELKPRT
Sbjct: 353 LTEAPVPGTTLGIVRVEGVLPGQAKLFDTPGLLNPQQITTRLNREEQRLVHISKELKPRT 412
Query: 407 YRIKVSL 413
YRIKVS
Sbjct: 413 YRIKVSF 419
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538577|ref|XP_003537779.1| PREDICTED: uncharacterized protein yqeH-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 271/423 (64%), Positives = 326/423 (77%), Gaps = 34/423 (8%)
Query: 5 ARNISQSKLKPIFHESFLTKI-----------TSPYLQLHPTKALKAPTSSSSSSSFSSQ 53
AR++S SKLKP+F+ S L + + P+LQ P K P S++ FSSQ
Sbjct: 4 ARSLSPSKLKPLFYLSILCECQNHFHSSLIPYSKPHLQNFP-KFYPQP-STNLFRFFSSQ 61
Query: 54 PTNTAPPPLSSSLALTRDGNYDEATPK-LTVCPGCGVLMQDTNPKHPGYFIRPSQ-NLNK 111
P ++ +L L+R+GNYDE + L VCPGCGV MQD+NPKHPGYFI+PS+ +L+
Sbjct: 62 PADSTE---KQNLPLSREGNYDEVNSQSLHVCPGCGVYMQDSNPKHPGYFIKPSEKDLSY 118
Query: 112 VRKSHLVHVANESEFSNSLKKGGLVVFEAE----NETSEVKKHEKPVVCARCHALRHYGK 167
++L VA E EFSN++K+G +V E E ++ + ++K EKPVVCARCH+LRHYGK
Sbjct: 119 RLYNNLEPVAQEPEFSNTVKRG--IVIEPEKLDDDDANLIRKPEKPVVCARCHSLRHYGK 176
Query: 168 VKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEE 227
VKD TVENLLPDFDFDHTVGRKL SASG RSVVLMVVD DFDGSFPRKVAK+VS T E+
Sbjct: 177 VKDPTVENLLPDFDFDHTVGRKLASASGTRSVVLMVVDVVDFDGSFPRKVAKLVSKTIED 236
Query: 228 NERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAV 287
+ AWK+GKSGNVPRVVLVVTKIDLLPSSLSPTR EHW+RQRARE GI+K++ LH VSA+
Sbjct: 237 HSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRLEHWIRQRAREGGINKVSSLHMVSAL 296
Query: 288 KNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347
++WGLK+L+D++VDLAG RGNVWA+GAQNAGKSTL+N+I K GG ++HL
Sbjct: 297 RDWGLKNLVDNIVDLAGPRGNVWAVGAQNAGKSTLINSIGKYA----GGK------ITHL 346
Query: 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTY 407
TEAPVPGTTLGIVRVEGV +QAKLFDTPGLLHP QITTRL REEQKLV++ KELKPRTY
Sbjct: 347 TEAPVPGTTLGIVRVEGVFSSQAKLFDTPGLLHPYQITTRLMREEQKLVHVGKELKPRTY 406
Query: 408 RIK 410
RIK
Sbjct: 407 RIK 409
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809289|ref|XP_002872528.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318365|gb|EFH48787.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 267/428 (62%), Positives = 323/428 (75%), Gaps = 39/428 (9%)
Query: 1 MLSRA-RNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTNTAP 59
MLS+A R +S SKLKP+F L+ SP PTK P S S + + T +
Sbjct: 1 MLSKAARELSSSKLKPLFALP-LSSFKSPI----PTK----PNPSPSFLNLHNSNTTSKS 51
Query: 60 PPL-------SSSLALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPS--QNL 109
P L SS L L RDGNY++ T ++VCPGCGV MQ++NPKHPG+FI+PS +
Sbjct: 52 PFLRFYSSSSSSLLPLNRDGNYNDTTSITISVCPGCGVHMQNSNPKHPGFFIKPSTEKQR 111
Query: 110 NKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETS-------EVKKHEKPVVCARCHAL 162
N + +LV ++ E EF +S+K+G + E N + E + +P+VCARCH+L
Sbjct: 112 NDLNLRNLVPISQEPEFIDSIKRG--FIIEPINSSDLNPKDHEETDQDSRPLVCARCHSL 169
Query: 163 RHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVS 222
RHYGKVKD TVENLLPDFDFDHTVGR+L SASGAR+VVLMVVDA+DFDGSFP++VAK+VS
Sbjct: 170 RHYGKVKDPTVENLLPDFDFDHTVGRRLGSASGARTVVLMVVDASDFDGSFPKRVAKLVS 229
Query: 223 DTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLH 282
T +EN AWKEGKSGNVPRVV+VVTKIDLLPSSLSPTRFEHWVR RARE G+SKITKLH
Sbjct: 230 RTIDENNMAWKEGKSGNVPRVVVVVTKIDLLPSSLSPTRFEHWVRLRAREGGLSKITKLH 289
Query: 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN 342
FVS +KNWG+K L++DV +AGKRG+VWA+G+QNAGKSTL+NA+ K V GG
Sbjct: 290 FVSPIKNWGIKDLVEDVAAMAGKRGHVWAVGSQNAGKSTLINAVGKVV----GGK----- 340
Query: 343 IVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL 402
V HLTEAPVPGTTLGI+R+EGVLP +AKLFDTPGLL+P+QITTRLTREEQ+LV+I+KEL
Sbjct: 341 -VWHLTEAPVPGTTLGIIRIEGVLPFEAKLFDTPGLLNPHQITTRLTREEQRLVHISKEL 399
Query: 403 KPRTYRIK 410
KPRTYRIK
Sbjct: 400 KPRTYRIK 407
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581678|ref|XP_002531642.1| conserved hypothetical protein [Ricinus communis] gi|223528727|gb|EEF30738.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/381 (66%), Positives = 305/381 (80%), Gaps = 19/381 (4%)
Query: 42 TSSSSSSSFSSQPTNT---APPPLSSSLALTRDGNYDEATPKLTVCPGCGVLMQDTNPKH 98
T+S + S F + P N+ P LTRDGNYD+ATP VCPGCG+ +QD++PK
Sbjct: 200 TASKTLSPFPTTPINSKQPPPSLSPPLFLLTRDGNYDDATPPAAVCPGCGIHIQDSDPKQ 259
Query: 99 PGYFIRPS-QNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKH------- 150
PG+F +PS ++ N +S LV ++ ESEFSNSLK G +V+ + E ET + K++
Sbjct: 260 PGFFTKPSIKDPNYKSRSSLVPISLESEFSNSLKTG-VVIDDDEAETHDSKQNPVTTTAA 318
Query: 151 EKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFD 210
EKP+VCARCH+LRHYGKVKD TVENLLP+FDFD TVG++L+SASGARSVVL+VVDA DFD
Sbjct: 319 EKPIVCARCHSLRHYGKVKDPTVENLLPEFDFDSTVGKRLVSASGARSVVLLVVDAVDFD 378
Query: 211 GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270
GSFP+KVAK+VS EEN +WKEGKSGNVPR+VLVVTKIDLLP++LSPTRFEHWVRQRA
Sbjct: 379 GSFPKKVAKLVSSAIEENFNSWKEGKSGNVPRIVLVVTKIDLLPTTLSPTRFEHWVRQRA 438
Query: 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSV 330
RE G S I K+HFVSAV++WGLK L+DDV+ +AG RGNVWA+G QNAGKSTL+NA+ K
Sbjct: 439 REGGASVIKKVHFVSAVRDWGLKDLVDDVIKMAGARGNVWAVGMQNAGKSTLINAMGKWT 498
Query: 331 DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTR 390
G GE K ++HLTEAPVPGTTLGIVRVEGVLP QAKLFDTPGLL+P+QITTRLTR
Sbjct: 499 -----GGGERK--LTHLTEAPVPGTTLGIVRVEGVLPGQAKLFDTPGLLNPHQITTRLTR 551
Query: 391 EEQKLVNINKELKPRTYRIKV 411
+EQKLV+I+KELK RTYRIK+
Sbjct: 552 DEQKLVHISKELKARTYRIKI 572
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4539440|emb|CAB40028.1| putative protein [Arabidopsis thaliana] gi|7267759|emb|CAB78185.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/430 (60%), Positives = 322/430 (74%), Gaps = 41/430 (9%)
Query: 1 MLSRA-RNISQSKLKPIFH---ESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTN 56
MLS+A R +S SKLKP+F SF + I PTK +P S + F+ N
Sbjct: 1 MLSKAARELSSSKLKPLFALHLSSFKSSI--------PTKPNPSPPSYLNPHHFN----N 48
Query: 57 TAPPPL---------SSSLALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPS 106
+ PP S+ L L RDGNY++ T ++VCPGCGV MQ++NPKHPG+FI+PS
Sbjct: 49 ISKPPFLRFYSSSSSSNLLPLNRDGNYNDTTSITISVCPGCGVHMQNSNPKHPGFFIKPS 108
Query: 107 --QNLNKVRKSHLVHVANESEFSNSLKKGGLV--VFEAE-NETSEVKKHEKPVVCARCHA 161
+ N + L ++ E EF +S+K+G ++ + ++ N + +P+VCARCH+
Sbjct: 109 TEKQRNDLNLRDLTPISQEPEFIDSIKRGFIIEPISSSDLNPRDDEPSDSRPLVCARCHS 168
Query: 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMV 221
LRHYG+VKD TVENLLPDFDFDHTVGR+L SASGAR+VVLMVVDA+DFDGSFP++VAK+V
Sbjct: 169 LRHYGRVKDPTVENLLPDFDFDHTVGRRLGSASGARTVVLMVVDASDFDGSFPKRVAKLV 228
Query: 222 SDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKL 281
S T +EN AWKEGKSGNVPRVV+VVTKIDLLPSSLSP RFE WVR RARE G+SKITKL
Sbjct: 229 SRTIDENNMAWKEGKSGNVPRVVVVVTKIDLLPSSLSPNRFEQWVRLRAREGGLSKITKL 288
Query: 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK 341
HFVS VKNWG+K L++DV +AGKRG+VWA+G+QNAGKSTL+NA+ K V GG
Sbjct: 289 HFVSPVKNWGIKDLVEDVAAMAGKRGHVWAVGSQNAGKSTLINAVGKVV----GGK---- 340
Query: 342 NIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401
V HLTEAPVPGTTLGI+R+EGVLP +AKLFDTPGLL+P+QITTRLTREEQ+LV+I+KE
Sbjct: 341 --VWHLTEAPVPGTTLGIIRIEGVLPFEAKLFDTPGLLNPHQITTRLTREEQRLVHISKE 398
Query: 402 LKPRTYRIKV 411
LKPRTYRIKV
Sbjct: 399 LKPRTYRIKV 408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18413362|ref|NP_567364.1| GTPase YqeH-like protein [Arabidopsis thaliana] gi|4115915|gb|AAD03426.1| contains similarity to Helix pomatia br-1 protein (GB: X96994) [Arabidopsis thaliana] gi|15293099|gb|AAK93660.1| unknown protein [Arabidopsis thaliana] gi|21281233|gb|AAM45035.1| unknown protein [Arabidopsis thaliana] gi|332657510|gb|AEE82910.1| GTPase YqeH-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/429 (60%), Positives = 321/429 (74%), Gaps = 41/429 (9%)
Query: 1 MLSRA-RNISQSKLKPIFH---ESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQPTN 56
MLS+A R +S SKLKP+F SF + I PTK +P S + F+ N
Sbjct: 1 MLSKAARELSSSKLKPLFALHLSSFKSSI--------PTKPNPSPPSYLNPHHFN----N 48
Query: 57 TAPPPL---------SSSLALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPS 106
+ PP S+ L L RDGNY++ T ++VCPGCGV MQ++NPKHPG+FI+PS
Sbjct: 49 ISKPPFLRFYSSSSSSNLLPLNRDGNYNDTTSITISVCPGCGVHMQNSNPKHPGFFIKPS 108
Query: 107 --QNLNKVRKSHLVHVANESEFSNSLKKGGLV--VFEAE-NETSEVKKHEKPVVCARCHA 161
+ N + L ++ E EF +S+K+G ++ + ++ N + +P+VCARCH+
Sbjct: 109 TEKQRNDLNLRDLTPISQEPEFIDSIKRGFIIEPISSSDLNPRDDEPSDSRPLVCARCHS 168
Query: 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMV 221
LRHYG+VKD TVENLLPDFDFDHTVGR+L SASGAR+VVLMVVDA+DFDGSFP++VAK+V
Sbjct: 169 LRHYGRVKDPTVENLLPDFDFDHTVGRRLGSASGARTVVLMVVDASDFDGSFPKRVAKLV 228
Query: 222 SDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKL 281
S T +EN AWKEGKSGNVPRVV+VVTKIDLLPSSLSP RFE WVR RARE G+SKITKL
Sbjct: 229 SRTIDENNMAWKEGKSGNVPRVVVVVTKIDLLPSSLSPNRFEQWVRLRAREGGLSKITKL 288
Query: 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK 341
HFVS VKNWG+K L++DV +AGKRG+VWA+G+QNAGKSTL+NA+ K V GG
Sbjct: 289 HFVSPVKNWGIKDLVEDVAAMAGKRGHVWAVGSQNAGKSTLINAVGKVV----GGK---- 340
Query: 342 NIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401
V HLTEAPVPGTTLGI+R+EGVLP +AKLFDTPGLL+P+QITTRLTREEQ+LV+I+KE
Sbjct: 341 --VWHLTEAPVPGTTLGIIRIEGVLPFEAKLFDTPGLLNPHQITTRLTREEQRLVHISKE 398
Query: 402 LKPRTYRIK 410
LKPRTYRIK
Sbjct: 399 LKPRTYRIK 407
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435640|ref|XP_002285660.1| PREDICTED: uncharacterized protein yqeH-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/418 (62%), Positives = 308/418 (73%), Gaps = 30/418 (7%)
Query: 6 RNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQP----TNTAPPP 61
R S SKLK + S T +S L L P +S+ S + + P +++ P
Sbjct: 4 RKFSASKLKHLLPLSVFTH-SSTNLSLSPF------SSNPISKTLNPNPHFLFSHSKLRP 56
Query: 62 LSSS-----LALTRDGNYDEA-TPKLTVCPGCGVLMQDTNPKHPGYFIRPSQ-NLNKVRK 114
SSS L TRDGN+DE + L +CPGCGV MQD++P PGYFI+PSQ + N +
Sbjct: 57 FSSSQSKPSLPFTRDGNFDETLSQSLFICPGCGVQMQDSDPVQPGYFIKPSQKDPNYRSR 116
Query: 115 SHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKH--EKPVVCARCHALRHYGKVKDVT 172
VA E E S+SLKKG LV E N + EKPVVCARCH+LRHYGKVKD T
Sbjct: 117 IDRRPVAEEPEISDSLKKGLLVEDENPNPNPNPNPNLVEKPVVCARCHSLRHYGKVKDPT 176
Query: 173 VENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAW 232
VENLLP+FDFDHTVGR+L+S SG RSVVLMVVDA+DFDGSFP++VAKMVS T +EN AW
Sbjct: 177 VENLLPEFDFDHTVGRRLVSTSGTRSVVLMVVDASDFDGSFPKRVAKMVSTTIDENYTAW 236
Query: 233 KEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGL 292
K GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE G +K+T +H VS+V++WGL
Sbjct: 237 KMGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGANKLTSVHLVSSVRDWGL 296
Query: 293 KSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352
K+L+DD+V L G+RGNVWAIGAQNAGKSTL+N+I K GG ++HLTEAPV
Sbjct: 297 KNLVDDIVQLVGRRGNVWAIGAQNAGKSTLINSIGKHA----GGK------LTHLTEAPV 346
Query: 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIK 410
PGTTLGIVRVEGVL AKLFDTPGLL+P+QITTRLT EEQKLV+++KELKPRTYRIK
Sbjct: 347 PGTTLGIVRVEGVLTGAAKLFDTPGLLNPHQITTRLTGEEQKLVHVSKELKPRTYRIK 404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746417|emb|CBI16473.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 259/428 (60%), Positives = 304/428 (71%), Gaps = 50/428 (11%)
Query: 3 SRARNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTSSSSSSSFSSQP-TNTAPP- 60
S RN + K + I + +K+ L P +++ S S FSS P + T P
Sbjct: 33 STGRNTKKQKREMIVRKFSASKLK----HLLPLSVFTHSSTNLSLSPFSSNPISKTLNPN 88
Query: 61 -----------PLSSS-----LALTRDGNYDEA-TPKLTVCPGCGVLMQDTNPKHPGYFI 103
P SSS L TRDGN+DE + L +CPGCGV MQD++P PGYFI
Sbjct: 89 PHFLFSHSKLRPFSSSQSKPSLPFTRDGNFDETLSQSLFICPGCGVQMQDSDPVQPGYFI 148
Query: 104 RPSQ-NLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHAL 162
+PSQ + N + VA E E S+SLKKG L KPVVCARCH+L
Sbjct: 149 KPSQKDPNYRSRIDRRPVAEEPEISDSLKKGLL----------------KPVVCARCHSL 192
Query: 163 RHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVS 222
RHYGKVKD TVENLLP+FDFDHTVGR+L+S SG RSVVLMVVDA+DFDGSFP++VAKMVS
Sbjct: 193 RHYGKVKDPTVENLLPEFDFDHTVGRRLVSTSGTRSVVLMVVDASDFDGSFPKRVAKMVS 252
Query: 223 DTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLH 282
T +EN AWK GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE G +K+T +H
Sbjct: 253 TTIDENYTAWKMGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGANKLTSVH 312
Query: 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN 342
VS+V++WGLK+L+DD+V L G+RGNVWAIGAQNAGKSTL+N+I K GG
Sbjct: 313 LVSSVRDWGLKNLVDDIVQLVGRRGNVWAIGAQNAGKSTLINSIGKHA----GGK----- 363
Query: 343 IVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL 402
++HLTEAPVPGTTLGIVRVEGVL AKLFDTPGLL+P+QITTRLT EEQKLV+++KEL
Sbjct: 364 -LTHLTEAPVPGTTLGIVRVEGVLTGAAKLFDTPGLLNPHQITTRLTGEEQKLVHVSKEL 422
Query: 403 KPRTYRIK 410
KPRTYRIK
Sbjct: 423 KPRTYRIK 430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 413 | ||||||
| TAIR|locus:2139247 | 597 | AT4G10620 "AT4G10620" [Arabido | 0.946 | 0.654 | 0.610 | 4.8e-126 | |
| UNIPROTKB|Q69NK1 | 604 | OJ1001_G09.27 "cDNA, clone: J1 | 0.840 | 0.574 | 0.501 | 1.2e-83 | |
| UNIPROTKB|Q656A4 | 681 | P0596H06.14 "Os06g0498900 prot | 0.644 | 0.390 | 0.489 | 1.1e-72 | |
| UNIPROTKB|A8I699 | 733 | NOL1 "NO synthase-like protein | 0.627 | 0.353 | 0.417 | 8.9e-53 | |
| UNIPROTKB|P54453 | 366 | yqeH "Uncharacterized protein | 0.426 | 0.480 | 0.326 | 5.2e-25 | |
| UNIPROTKB|Q81LQ0 | 368 | yqeH "GTPase family protein" [ | 0.428 | 0.480 | 0.306 | 1.5e-24 | |
| TIGR_CMR|BA_4562 | 368 | BA_4562 "GTPase family protein | 0.428 | 0.480 | 0.306 | 1.5e-24 | |
| UNIPROTKB|Q71ZH9 | 366 | LMOf2365_1510 "Putative GTPase | 0.382 | 0.431 | 0.329 | 3.7e-24 | |
| UNIPROTKB|Q9WZV2 | 363 | TM_0848 "Ribosome biogenesis G | 0.191 | 0.217 | 0.388 | 1.2e-16 | |
| ASPGD|ASPL0000009462 | 634 | AN10438 [Emericella nidulans ( | 0.554 | 0.361 | 0.276 | 1.7e-15 |
| TAIR|locus:2139247 AT4G10620 "AT4G10620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 260/426 (61%), Positives = 317/426 (74%)
Query: 1 MLSRA-RNISQSKLKPIFHESFLTKITSPYLQLHPTKALKAPTXXXXXXXXXXQPTNTAP 59
MLS+A R +S SKLKP+F L+ S PTK +P N +
Sbjct: 1 MLSKAARELSSSKLKPLF-ALHLSSFKSSI----PTKPNPSPPSYLNPHHF----NNISK 51
Query: 60 PPL-----SSS----LALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPS--Q 107
PP SSS L L RDGNY++ T ++VCPGCGV MQ++NPKHPG+FI+PS +
Sbjct: 52 PPFLRFYSSSSSSNLLPLNRDGNYNDTTSITISVCPGCGVHMQNSNPKHPGFFIKPSTEK 111
Query: 108 NLNKVRKSHLVHVANESEFSNSLKKGGLV--VFEAE-NETSEVKKHEKPVVCARCHALRH 164
N + L ++ E EF +S+K+G ++ + ++ N + +P+VCARCH+LRH
Sbjct: 112 QRNDLNLRDLTPISQEPEFIDSIKRGFIIEPISSSDLNPRDDEPSDSRPLVCARCHSLRH 171
Query: 165 YGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDT 224
YG+VKD TVENLLPDFDFDHTVGR+L SASGAR+VVLMVVDA+DFDGSFP++VAK+VS T
Sbjct: 172 YGRVKDPTVENLLPDFDFDHTVGRRLGSASGARTVVLMVVDASDFDGSFPKRVAKLVSRT 231
Query: 225 AEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFV 284
+EN AWKEGKSGNVPRVV+VVTKIDLLPSSLSP RFE WVR RARE G+SKITKLHFV
Sbjct: 232 IDENNMAWKEGKSGNVPRVVVVVTKIDLLPSSLSPNRFEQWVRLRAREGGLSKITKLHFV 291
Query: 285 SAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344
S VKNWG+K L++DV +AGKRG+VWA+G+QNAGKSTL+NA+ K V GG V
Sbjct: 292 SPVKNWGIKDLVEDVAAMAGKRGHVWAVGSQNAGKSTLINAVGKVV----GGK------V 341
Query: 345 SHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKP 404
HLTEAPVPGTTLGI+R+EGVLP +AKLFDTPGLL+P+QITTRLTREEQ+LV+I+KELKP
Sbjct: 342 WHLTEAPVPGTTLGIIRIEGVLPFEAKLFDTPGLLNPHQITTRLTREEQRLVHISKELKP 401
Query: 405 RTYRIK 410
RTYRIK
Sbjct: 402 RTYRIK 407
|
|
| UNIPROTKB|Q69NK1 OJ1001_G09.27 "cDNA, clone: J100031B16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 188/375 (50%), Positives = 235/375 (62%)
Query: 55 TNTAPP--PLSSSLALTRDGNYDEATPKLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKV 112
T PP P SLA + + A +CPGCG+ MQ ++P PG+F PS
Sbjct: 54 TKPPPPQAPPEKSLAPAKVSSDPPAVSANGLCPGCGIAMQSSDPSLPGFFSLPSPKSPDY 113
Query: 113 RKSHLVHVANESEFSNSLKKGGLVVFEAENETS----------EV----KKHEKPVVCAR 158
R A+++ S SLK G L EA S EV KK K VVCAR
Sbjct: 114 RARLAPVTADDTRISASLKSGHLREGEAAAAASSSSAAVGVGVEVEKEGKKENKVVVCAR 173
Query: 159 CHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVA 218
CH+LRHYG VK E LLPDFDF VG +L S SGARS+VL++ DA+DFDGSFPR VA
Sbjct: 174 CHSLRHYGVVKRPEAEPLLPDFDFVAAVGPRLASPSGARSLVLLLADASDFDGSFPRAVA 233
Query: 219 KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED--GI 275
++V+ E + WK G N+PR +LVVTK+DLLP+ SLSP W RAR G
Sbjct: 234 RLVAAAGEAHGSDWKHGAPANLPRALLVVTKLDLLPTPSLSPDDVHAWAHSRARAGAGGD 293
Query: 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335
++ +H VSA + WG++ L+D V LAG RGNVWA+GA+N GKSTLLNAIA+ G
Sbjct: 294 LRLAGVHLVSAARGWGVRDLLDHVRQLAGSRGNVWAVGARNVGKSTLLNAIARCSGI-EG 352
Query: 336 GDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL 395
G LTEAPVPGTTL +++V+GVL +QAKLFDTPGLLH +Q+T+RLTREEQKL
Sbjct: 353 GPT--------LTEAPVPGTTLDVIQVDGVLGSQAKLFDTPGLLHGHQLTSRLTREEQKL 404
Query: 396 VNINKELKPRTYRIK 410
V ++KE++PRTYR+K
Sbjct: 405 VRVSKEMRPRTYRLK 419
|
|
| UNIPROTKB|Q656A4 P0596H06.14 "Os06g0498900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 139/284 (48%), Positives = 179/284 (63%)
Query: 131 KKGGLVVFEAENETSEVKKHEKP----VVCARCHALRHYGKVKDVTVENLLPDFDFDHTV 186
KK L E + E KK E VVCARCH+LR+YG VK+ ENL+PDFDFD +
Sbjct: 232 KKEKLSKSERKRRAREAKKAEAEEDAAVVCARCHSLRNYGHVKNDKAENLIPDFDFDRFI 291
Query: 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLV 246
+LM S V++MV D ADFDGSFP++ AK + E + K PR+VLV
Sbjct: 292 SSRLMKRSAGTPVIVMVADCADFDGSFPKRAAKSLFKALEGRGTS----KLSETPRLVLV 347
Query: 247 VTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306
TK+DLLP R E WVR RA+ G K+ + +S K+ +++LI V +LAG R
Sbjct: 348 GTKVDLLPWQQMGVRLEKWVRGRAKAFGAPKLDAVFLISVHKDLSVRNLISYVKELAGPR 407
Query: 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL 366
NVW IGAQNAGKSTL+NA AK G + ++ LTEA VPGTTLGI+R+ GVL
Sbjct: 408 SNVWVIGAQNAGKSTLINAFAKK-------QGVK---ITRLTEAAVPGTTLGILRITGVL 457
Query: 367 PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIK 410
PA+AK++DTPGLLHP ++ RL EE+K+V I KEL+PR +R+K
Sbjct: 458 PAKAKMYDTPGLLHPYIMSMRLNSEERKMVEIRKELRPRCFRVK 501
|
|
| UNIPROTKB|A8I699 NOL1 "NO synthase-like protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 8.9e-53, Sum P(2) = 8.9e-53
Identities = 114/273 (41%), Positives = 160/273 (58%)
Query: 139 EAENETSEVKKHEKP-VVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGAR 197
+A ++ V+ E+P V+C RC +L+H GKVK E LPDFD VGRK+ R
Sbjct: 237 DAYDDVGLVRADEEPDVLCQRCFSLKHSGKVKVQAAETALPDFDLGKKVGRKIHLQKDRR 296
Query: 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL 257
+VVL VVD DFDGS PR + + +E A E ++ ++ K DLLP
Sbjct: 297 AVVLCVVDMWDFDGSLPRAALRSLLPPGVTSEAAAPEDLKFSL---MVAANKFDLLPPQA 353
Query: 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNA 317
+P R + WVR R ++ G+ K+ VSA K G+K ++ DV G RG++W +GAQNA
Sbjct: 354 TPARVQQWVRLRLKQAGLPPPDKVFLVSAAKGTGVKDMVQDVRQALGYRGDLWVVGAQNA 413
Query: 318 GKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTP 376
GKS+L+ A+ + AG G GE T APVPGTTLG+++V G+ L + + FDTP
Sbjct: 414 GKSSLIAAMKRL--AGTAGKGEP-------TIAPVPGTTLGLLQVPGLPLGPKHRAFDTP 464
Query: 377 GLLHPNQITTRLTREEQKLVNINKELKPRTYRI 409
G+ H +Q+T+RL E+ K V +K LK RTYR+
Sbjct: 465 GVPHGHQLTSRLGLEDVKQVLPSKPLKGRTYRL 497
|
|
| UNIPROTKB|P54453 yqeH "Uncharacterized protein YqeH" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 64/196 (32%), Positives = 109/196 (55%)
Query: 217 VAKMVSDTAEENERAWKEGKS---GNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273
V K+V D + N +W G G P ++LV K D+LP SL R W+++ A+E
Sbjct: 72 VVKIV-DIFDFNG-SWINGLQRLVGGNP-ILLVGNKADILPKSLKRERLIQWMKREAKEL 128
Query: 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333
G+ + + VSA + G++ +ID + + +V+ +G N GKST +N I K V
Sbjct: 129 GLKPVD-VFLVSAGRGQGIREVIDAIEHYRNGK-DVYVVGCTNVGKSTFINRIIKEVS-- 184
Query: 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393
GEE +I+ T + PGTTL + + L + L+DTPG+++ +Q+ + +++
Sbjct: 185 ----GEE-DII---TTSQFPGTTLDAIEIP--LDDGSSLYDTPGIINNHQMAHYVNKKDL 234
Query: 394 KLVNINKELKPRTYRI 409
K+++ KELKPRT+++
Sbjct: 235 KILSPKKELKPRTFQL 250
|
|
| UNIPROTKB|Q81LQ0 yqeH "GTPase family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 60/196 (30%), Positives = 106/196 (54%)
Query: 217 VAKMVSDTAEENERAWKEGKS---GNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273
V K+V D + N +W G GN +V+LV K DL+P S+ + +HW+R A++
Sbjct: 73 VVKIV-DIFDFNG-SWLPGLHRFVGN-NKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129
Query: 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333
G+ K + +SA K G+ L D + G + +V+ +G N GKST +N + K
Sbjct: 130 GL-KPEDVFLISAAKGQGIAELADAIEYYRGGK-DVYVVGCTNVGKSTFINRMIKEFS-- 185
Query: 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393
E +N++ T + PGTTL ++ + L ++ L+DTPG+++ +Q+ + ++
Sbjct: 186 ----DETENVI---TTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSL 236
Query: 394 KLVNINKELKPRTYRI 409
KL+ KE+KP +++
Sbjct: 237 KLITPTKEIKPMVFQL 252
|
|
| TIGR_CMR|BA_4562 BA_4562 "GTPase family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 227 (85.0 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 60/196 (30%), Positives = 106/196 (54%)
Query: 217 VAKMVSDTAEENERAWKEGKS---GNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273
V K+V D + N +W G GN +V+LV K DL+P S+ + +HW+R A++
Sbjct: 73 VVKIV-DIFDFNG-SWLPGLHRFVGN-NKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL 129
Query: 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333
G+ K + +SA K G+ L D + G + +V+ +G N GKST +N + K
Sbjct: 130 GL-KPEDVFLISAAKGQGIAELADAIEYYRGGK-DVYVVGCTNVGKSTFINRMIKEFS-- 185
Query: 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393
E +N++ T + PGTTL ++ + L ++ L+DTPG+++ +Q+ + ++
Sbjct: 186 ----DETENVI---TTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSL 236
Query: 394 KLVNINKELKPRTYRI 409
KL+ KE+KP +++
Sbjct: 237 KLITPTKEIKPMVFQL 252
|
|
| UNIPROTKB|Q71ZH9 LMOf2365_1510 "Putative GTPase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 214 (80.4 bits), Expect = 3.7e-24, Sum P(3) = 3.7e-24
Identities = 57/173 (32%), Positives = 93/173 (53%)
Query: 237 SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI 296
+G+ P V+LV K D+LP SL + W+R RA+E G++ T + VSA K G +L+
Sbjct: 94 AGSNP-VLLVGNKEDVLPKSLKRDKLTRWMRTRAKEQGLAA-TDVVLVSAEKGHGFDTLL 151
Query: 297 DDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
+ + +L + +V+ +G N GKSTL+N I K E N++ T + PGTT
Sbjct: 152 EKIEELRNGQ-DVYVVGCTNVGKSTLINRIIKQASG-------ENNVI---TTSQFPGTT 200
Query: 357 LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRI 409
L ++E L L DTPG+++ +Q+ + K + KE+KP +++
Sbjct: 201 LD--KIEIPLADGNVLVDTPGIINHHQMAHFIDTTTLKAITPKKEVKPAVFQL 251
|
|
| UNIPROTKB|Q9WZV2 TM_0848 "Ribosome biogenesis GTPase YqeH" [Thermotoga maritima MSB8 (taxid:243274)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301
RV+ V+ KIDLLP +++ + WV++R + I VSA KN+GL SL+ +
Sbjct: 98 RVIYVINKIDLLPRAVTVKEIKEWVKKRIKTKNTDDI---RIVSAEKNFGLTSLVKYLSR 154
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNAI 326
L K +G N GKS+LLN I
Sbjct: 155 LTDK---ALVVGVTNVGKSSLLNKI 176
|
|
| ASPGD|ASPL0000009462 AN10438 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 73/264 (27%), Positives = 128/264 (48%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKV----RKSHLVHVAN-ESEFS--NSLKKGGLV 136
CPGCG Q P PG++ + + K+ +K L A E+ F+ ++++ +
Sbjct: 70 CPGCGAYSQTVEPNEPGFYSKTRKQTRKLLLEAQKEPLKESATQEAVFTVQKAVEEAEIA 129
Query: 137 VFEAENETSE-VKKHEKPV-VCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSAS 194
+ S+ ++K + PV VC RCH L H+ K V + P H++G L +
Sbjct: 130 PKPHPDTVSQYLEKSQSPVQVCDRCHDLLHHNK----GVSAISPSI---HSIGAYLDESP 182
Query: 195 GARSVVLMVVDAADFDGSFPRKVAKM--VSDTAEENERA----WKEGKSGNVPRVVLVVT 248
+ + ++DAADF S + + + + N R+ +K GK +P + V+T
Sbjct: 183 HKHNRIYHIIDAADFPMSLVDGIYEELGIQEQRSRNRRSATYKYKHGKK--LPTITFVIT 240
Query: 249 KIDLL-PSS-LSPTRFEHWVRQRARED-GIS----KITKLHFVSAVKNWGLKSLIDDVVD 301
+ DLL P+ L ++ E +VR RE GIS ++ +H +SA + W K + +++ +
Sbjct: 241 RSDLLGPTKELVDSKME-FVRSVLREKLGISSEEFRLGNVHMISAHRGWWTKKVKEEMRE 299
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNA 325
G +W +G NAGKS+ + A
Sbjct: 300 HGG---GIWIVGKANAGKSSFVQA 320
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 413 | |||
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 3e-62 | |
| TIGR03597 | 360 | TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase | 2e-48 | |
| PRK13796 | 365 | PRK13796, PRK13796, GTPase YqeH; Provisional | 4e-48 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 8e-17 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 2e-09 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 1e-08 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-08 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 2e-07 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 4e-07 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 6e-07 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 2e-06 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 2e-06 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 3e-06 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 3e-06 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 4e-06 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 1e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 1e-05 | |
| cd04163 | 168 | cd04163, Era, E | 3e-05 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 3e-05 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 5e-05 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 6e-05 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 7e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 1e-04 | |
| cd04163 | 168 | cd04163, Era, E | 3e-04 | |
| PRK12298 | 390 | PRK12298, obgE, GTPase CgtA; Reviewed | 3e-04 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 5e-04 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 6e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 0.002 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 0.002 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 0.002 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 0.002 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 0.004 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 0.004 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 3e-62
Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 32/223 (14%)
Query: 156 CARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPR 215
C RC L+HY K+ DV +PD DF + L ++V+ VVD DF GS
Sbjct: 1 CQRCFKLKHYNKLLDV----EIPDEDFLEILSTLLND----NALVVHVVDIFDFPGSLIP 52
Query: 216 KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275
+A+++ V+LV KIDLLP + P R + WV++R + G
Sbjct: 53 GLAELIGAK-----------------PVILVGNKIDLLPKDVKPNRLKQWVKKRLKIGG- 94
Query: 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335
KI + VSA K WG++ LI+++ LA RG+V+ +GA N GKSTL+NA+ KS G
Sbjct: 95 LKIKDVILVSAKKGWGVEELIEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSN----G 150
Query: 336 GDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378
G + + +V LT +P+PGTTLG++++ L KL+DTPG+
Sbjct: 151 GKVQAQALVQRLTVSPIPGTTLGLIKIP--LGEGKKLYDTPGI 191
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-48
Identities = 93/327 (28%), Positives = 154/327 (47%), Gaps = 81/327 (24%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENE 143
C GCG +Q T+PK PGY + A E E
Sbjct: 1 CIGCGAAIQTTDPKKPGYTPKS---------------ALEKEE----------------- 28
Query: 144 TSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMV 203
V C RC L+HY +++DV + D DF + L S + ++++ V
Sbjct: 29 ----------VYCQRCFRLKHYNEIQDVELN----DDDFLN----LLNSLGDSNALIVYV 70
Query: 204 VDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE 263
VD DF+GS ++ + V V+LV KIDLLP S++ ++ +
Sbjct: 71 VDIFDFEGSLIPELKRFVGGN-----------------PVLLVGNKIDLLPKSVNLSKIK 113
Query: 264 HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323
W+++RA+E G+ K + VSA K G+ L+D + K+ +V+ +G N GKS+L+
Sbjct: 114 EWMKKRAKELGL-KPVDIILVSAKKGNGIDELLDKIKKARNKK-DVYVVGVTNVGKSSLI 171
Query: 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQ 383
N + K + G++ I T +P PGTTL ++ + L L+DTPG+++ +Q
Sbjct: 172 NKLLKQNN------GDKDVI----TTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQ 219
Query: 384 ITTRLTREEQKLVNINKELKPRTYRIK 410
+ L +++ K + KE+KP+TY++
Sbjct: 220 MAHYLDKKDLKYITPKKEIKPKTYQLN 246
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360 |
| >gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 4e-48
Identities = 102/330 (30%), Positives = 158/330 (47%), Gaps = 87/330 (26%)
Query: 83 VCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAEN 142
C GCG +Q + PGY A S +LKKG E E
Sbjct: 2 RCIGCGAAIQTEDKNKPGY-------------------APAS----ALKKG----LETEE 34
Query: 143 ETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASG-ARSVVL 201
V C RC L+HY +++DV+ L D DF KL++ G + ++V+
Sbjct: 35 -----------VYCQRCFRLKHYNEIQDVS----LTDDDF-----LKLLNGIGDSDALVV 74
Query: 202 MVVDAADFDGSF----PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL 257
VVD DF+GS+ R V GN P V+LV K DLLP S+
Sbjct: 75 NVVDIFDFNGSWIPGLHRFV--------------------GNNP-VLLVGNKADLLPKSV 113
Query: 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNA 317
+ ++W+RQ A+E G+ + + +SA K G+ L++ + R +V+ +G N
Sbjct: 114 KKNKVKNWLRQEAKELGL-RPVDVVLISAQKGHGIDELLEAIEKYREGR-DVYVVGVTNV 171
Query: 318 GKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPG 377
GKSTL+N I K + EK+++ T + PGTTL ++E L + L+DTPG
Sbjct: 172 GKSTLINRIIKEI-------TGEKDVI---TTSRFPGTTLD--KIEIPLDDGSFLYDTPG 219
Query: 378 LLHPNQITTRLTREEQKLVNINKELKPRTY 407
++H +Q+ L+ ++ K+++ KE+KP+TY
Sbjct: 220 IIHRHQMAHYLSAKDLKIISPKKEIKPKTY 249
|
Length = 365 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-17
Identities = 60/268 (22%), Positives = 94/268 (35%), Gaps = 72/268 (26%)
Query: 156 CARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPR 215
C RC L+HY K++ + L S VV+ VVDA D G+
Sbjct: 2 CQRCFRLKHYNKIQWFP----GHMKKAKRQLKEVLKSVD----VVVEVVDARDPLGTRNP 53
Query: 216 KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275
++ ++V + +LV+ K DL P ++ + W + +E+GI
Sbjct: 54 ELERIVKE-----------------KPKLLVLNKADLAPKEVT----KKWKKYFKKEEGI 92
Query: 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAG-------------KRGNVWAIGAQNAGKSTL 322
I FVSA G K + + L+ ++ V +G N GKSTL
Sbjct: 93 KPI----FVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTL 148
Query: 323 LNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLG---IVRVEGVLPAQAKLFDTPGLL 379
+N + + PGTT G I +G+ L DTPG++
Sbjct: 149 INRLLGK---------------KVAKTSNRPGTTKGIQWIKLDDGIY-----LLDTPGII 188
Query: 380 HPNQITTRLTREEQKLVNINKELKPRTY 407
P + E+K
Sbjct: 189 PPKFD---DDELVLLKLAPKGEIKDPVL 213
|
Length = 322 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371
+G N GKSTL+NA+ G + IVS PGTT + L Q
Sbjct: 5 VGRPNVGKSTLINALT----------GAKVAIVS-----DYPGTTRDPILGVLGLGRQII 49
Query: 372 LFDTPGLLHPNQITTRLTREEQKLVNINK 400
L DTPGL+ + + L I +
Sbjct: 50 LVDTPGLIEGASEGKGVEGFNRFLEAIRE 78
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-08
Identities = 43/178 (24%), Positives = 64/178 (35%), Gaps = 72/178 (40%)
Query: 199 VVLMVVDA------ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252
V+L VVD AD ++AK++ R K K V+LVV K+D
Sbjct: 83 VILFVVDGRAGLTPAD------EEIAKIL--------R--KSNK-----PVILVVNKVD- 120
Query: 253 LPSSLSPTRFEHWVRQRAREDGISKITKL-----HFVSAVKNWGLKSLIDDVVDLAGKRG 307
E + L + +SA G+ L+D +++ +
Sbjct: 121 ---------------GPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEE 165
Query: 308 NVWA---------IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
IG N GKS+L+NA+ GEE+ IVS + GTT
Sbjct: 166 EEDEEDEPIKIAIIGRPNVGKSSLINALL----------GEERVIVS-----DIAGTT 208
|
Length = 435 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA--Q 369
G N GKS+LLNA+ G+ IVS P+PGTT VR E L
Sbjct: 3 FGRPNVGKSSLLNALL----------GQNVGIVS-----PIPGTTRDPVRKEWELLPLGP 47
Query: 370 AKLFDTPGLL---HPNQITTRLTREE 392
L DTPGL + R+
Sbjct: 48 VVLIDTPGLDEEGGLGRERVEEARQV 73
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-07
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 73/179 (40%)
Query: 199 VVLMVVDA------ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252
V+L VVD D ++AK + ++ K V+LV KID
Sbjct: 81 VILFVVDGREGLTPED------EEIAKWLR-------KSGKP--------VILVANKID- 118
Query: 253 LPSSLSPTRFEHWVRQRAREDGISK-----ITKLHFVSAVKNWGLKSLIDDVVDLAGKRG 307
+ + ++ + +SA G+ L+D +++L +
Sbjct: 119 ---------------GKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEE 163
Query: 308 N----------VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
+ IG N GKSTL+NA+ GEE+ IVS + GTT
Sbjct: 164 EEEEEEDGPIKIAIIGRPNVGKSTLVNALL----------GEERVIVS-----DIAGTT 207
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 4e-07
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 30/98 (30%)
Query: 292 LKSLIDDVVDLAGKRGNVW------AI-GAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344
L + ++ ++ A ++G + I G N GKS+LLNA+ GEE+ IV
Sbjct: 195 LIAELEALLASA-RQGEILREGLKVVIAGRPNVGKSSLLNALL----------GEERAIV 243
Query: 345 SHLTEAPVPGTTLGIVRV----EGVLPAQAKLFDTPGL 378
+ + GTT ++ +G+ +L DT G+
Sbjct: 244 T-----DIAGTTRDVIEEHINLDGIP---LRLIDTAGI 273
|
Length = 449 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-07
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 22/71 (30%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRV----EGVLP 367
G N GKS+LLNA+A G ++ IVS + GTT ++ G+
Sbjct: 9 AGKPNVGKSSLLNALA----------GRDRAIVS-----DIAGTTRDVIEEEIDLGGIP- 52
Query: 368 AQAKLFDTPGL 378
+L DT GL
Sbjct: 53 --VRLIDTAGL 61
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/180 (25%), Positives = 65/180 (36%), Gaps = 74/180 (41%)
Query: 199 VVLMVVD------AADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252
V+L VVD AD + +AK++ + P V+LVV KID
Sbjct: 86 VILFVVDGREGITPADEE------IAKIL--------------RRSKKP-VILVVNKID- 123
Query: 253 LPSSLSPTRFEHWVRQRAREDGISKITKLHF-----VSAVKNWGLKSLIDDVVDLA---- 303
E+ + L F +SA G+ L+D V++L
Sbjct: 124 ---------------NLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDE 168
Query: 304 -------GKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
+ IG N GKS+L+NAI GEE+ IVS + GTT
Sbjct: 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAIL----------GEERVIVS-----DIAGTT 213
|
Length = 444 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 30/99 (30%)
Query: 291 GLKSLIDDVVDLAGKRG-------NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343
L + +D+++ A K+G V IG N GKS+LLNA+ G ++ I
Sbjct: 196 ELIAELDELLATA-KQGKILREGLKVVIIGRPNVGKSSLLNALL----------GRDRAI 244
Query: 344 VSHLTEAPVPGTTLGIVR----VEGVLPAQAKLFDTPGL 378
V+ + GTT ++ + G+ +L DT G+
Sbjct: 245 VTD-----IAGTTRDVIEEDINLNGIP---VRLVDTAGI 275
|
Length = 454 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 43/156 (27%)
Query: 238 GNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLID 297
GN PR+ +V+ K DL P + + W++ + + FV+A G+K L+
Sbjct: 45 GNKPRL-IVLNKADLA----DPAKTKKWLKYFKSQG-----EPVLFVNAKNGKGVKKLLK 94
Query: 298 DVVDLAGKRGNVWAIGAQ------------NAGKSTLLNAIAKSVDAGRGGDGEEKNIVS 345
L + + A G N GKSTL+N +
Sbjct: 95 KAKKLLKENEKLKAKGLLPRPLRAMVVGIPNVGKSTLINRLRGK---------------K 139
Query: 346 HLTEAPVPGTT--LGIVRVEGVLPAQAKLFDTPGLL 379
PG T +R+ + +L DTPG+L
Sbjct: 140 VAKVGNKPGVTRGQQWIRIGPNI----ELLDTPGIL 171
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 40/181 (22%)
Query: 199 VVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS 258
VVL VVDA D + + RK+ +M + GK ++++V+ K DL+P +
Sbjct: 14 VVLEVVDARDPELTRSRKLERMAL----------ELGK-----KLIIVLNKADLVPREVL 58
Query: 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA--GKRGNVWAIGAQN 316
E W +G+ + +VSA + G + L + +LA GK V +G
Sbjct: 59 ----EKWKE-VFESEGLPVV----YVSARERLGTRILRRTIKELAIDGKPVIVGVVGYPK 109
Query: 317 AGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTP 376
GKS+++NA+ +G ++ S PG T GI V + ++ L DTP
Sbjct: 110 VGKSSIINAL-------KG-----RHSASTSPIPGSPGYTKGIQLVR--IDSKIYLIDTP 155
Query: 377 G 377
G
Sbjct: 156 G 156
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 45/185 (24%), Positives = 69/185 (37%), Gaps = 45/185 (24%)
Query: 199 VVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS 258
VV+ VVDA D S D K+ +++V+ K DL+P
Sbjct: 2 VVVEVVDARDPLSS-------RNPDIEVLINEKNKK--------LIMVLNKADLVP---- 42
Query: 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR---GNVWA--IG 313
+ +R+ E TK F+SA G+ L ++ K + +G
Sbjct: 43 ----KEVLRKWVAELSELYGTKTFFISATNGQGILKLKAEITKQKLKLKYKKGIRVGVVG 98
Query: 314 AQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLF 373
N GKS+ +NA+ K V +PGTT V+ L + L+
Sbjct: 99 LPNVGKSSFINALLNKF----------KLKVGS-----IPGTTKLQQDVK--LDKEIYLY 141
Query: 374 DTPGL 378
DTPG+
Sbjct: 142 DTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 1e-05
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 22/75 (29%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367
+G N GKSTLLNA+ G++ +IVS P P TT GIV +
Sbjct: 11 VGRPNVGKSTLLNALV----------GQKISIVS-----PKPQTTRHRIRGIVTED---D 52
Query: 368 AQAKLFDTPGLLHPN 382
AQ DTPG+ P
Sbjct: 53 AQIIFVDTPGIHKPK 67
|
Length = 292 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371
+G GKS+LLNA+ G E VS VPGTT L
Sbjct: 3 VGRGGVGKSSLLNALL----------GGEVGEVS-----DVPGTTRDPDVYVKELDKGKV 47
Query: 372 ---LFDTPGL 378
L DTPGL
Sbjct: 48 KLVLVDTPGL 57
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-05
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367
IG N GKSTLLNA+ G++ +IVS P P TT GI +
Sbjct: 9 IGRPNVGKSTLLNALV----------GQKISIVS-----PKPQTTRNRIRGIYTDDD--- 50
Query: 368 AQAKLFDTPGLLHP 381
AQ DTPG+ P
Sbjct: 51 AQIIFVDTPGIHKP 64
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-05
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQA- 370
IG N GKS+LLNA+ GEE+ IVS + GTT + V Q
Sbjct: 8 IGRPNVGKSSLLNALL----------GEERVIVS-----DIAGTTRDSIDVPFEYDGQKY 52
Query: 371 KLFDTPGL 378
L DT G+
Sbjct: 53 TLIDTAGI 60
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 20/80 (25%)
Query: 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG 364
K G V IG N GKSTLLNA+ G++ +IVS P TT +R G
Sbjct: 5 KSGFVAIIGRPNVGKSTLLNALV----------GQKISIVSP-----KPQTTRNRIR--G 47
Query: 365 VL---PAQAKLFDTPGLLHP 381
++ AQ DTPG+ P
Sbjct: 48 IVTTDNAQIIFVDTPGIHKP 67
|
Length = 298 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 20/125 (16%)
Query: 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGK 236
L +F + GA ++L+VVD+ S + + +
Sbjct: 57 LDEFGGLGREELARLLLRGA-DLILLVVDS-TDRESE-----------EDAKLLILRRLR 103
Query: 237 SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI 296
+P ++LV KIDLL E R E + VSA G+ L
Sbjct: 104 KEGIP-IILVGNKIDLLEER------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156
Query: 297 DDVVD 301
+ +++
Sbjct: 157 EKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-05
Identities = 38/151 (25%), Positives = 50/151 (33%), Gaps = 54/151 (35%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWG---LKSLIDD 298
V+V+ K DL+ E + + G + VSA G L+ L+
Sbjct: 35 EPVIVLNKADLVDDEELEELLEIY-----EKLGY----PVLAVSAKTGEGLDELRELLKG 85
Query: 299 --VVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDA---------GRGGDGEEKNIVSHL 347
V L G+ G GKSTLLNA+ + GRG H
Sbjct: 86 KTSV-LVGQSG---------VGKSTLLNALLPELVLATGEISEKLGRG---------RH- 125
Query: 348 TEAPVPGTTLGIVRVEGV-LPAQAKLFDTPG 377
TT E LP + DTPG
Sbjct: 126 -------TT---THRELFPLPGGGLIIDTPG 146
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 50/164 (30%)
Query: 237 SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI 296
GN PR+ +V+ K DL P + W++ E GI K ++A K G+K +I
Sbjct: 46 RGNKPRL-IVLNKADLA----DPAVTKQWLK-YFEEKGI----KALAINAKKGKGVKKII 95
Query: 297 DDVVDLAGKRGNVWA-------------IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343
L ++ +G N GKSTL+N +A K +
Sbjct: 96 KAAKKLLKEKNEKLKAKGLLNRPIRAMIVGIPNVGKSTLINRLAG------------KKV 143
Query: 344 VSHLTEAPV---PGTTLGI--VRVEGVLPAQAKLFDTPGLLHPN 382
A V PG T G +++ L +L DTPG+L P
Sbjct: 144 ------AKVGNRPGVTKGQQWIKLSDGL----ELLDTPGILWPK 177
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-04
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 199 VVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS 258
+VL VVDA+++ G + +++ + P V+LV+ KIDL+
Sbjct: 85 LVLFVVDASEWIGEGDEFILELLKKS--------------KTP-VILVLNKIDLVKDK-- 127
Query: 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303
E + + + ++ +SA+K + L++ +V+
Sbjct: 128 ----EDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVEYL 168
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL 257
V+L ++D A DGS P + A+++ NE K PR LV KIDLL
Sbjct: 239 RVLLHLIDIAPIDGSDPVENARII-----INELEKYSPKLAEKPRW-LVFNKIDLLD--- 289
Query: 258 SPTRFEHWVRQRARE--DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302
E +RA+ + + ++ +SA G+K L D++
Sbjct: 290 -----EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF 331
|
Length = 390 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 44/161 (27%)
Query: 237 SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI 296
GN PR+ L++ K DL P + W + E GI K ++A K G+K ++
Sbjct: 49 IGNKPRL-LILNKSDLAD----PEVTKKW-IEYFEEQGI----KALAINAKKGQGVKKIL 98
Query: 297 D-------DVVDLAGKRG------NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343
+ + +G IG N GKSTL+N +A K I
Sbjct: 99 KAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG------------KKI 146
Query: 344 VSHLTEAPVPGTT--LGIVRVEGVLPAQAKLFDTPGLLHPN 382
PG T +++ L +L DTPG+L P
Sbjct: 147 AK---TGNRPGVTKAQQWIKLGKGL----ELLDTPGILWPK 180
|
Length = 287 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENE-RAWKEGKSGNVPRVVLVVTKIDLLPSS 256
V+L ++D + DGS P + +++ NE + + + PR+V V+ KIDLL
Sbjct: 237 RVLLHLIDISPEDGSDPIEDYEII-----RNELKKYSPELA-EKPRIV-VLNKIDLLDEE 289
Query: 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302
E +++ G + +SA+ GL L+ + +L
Sbjct: 290 E----LEELLKELKEALGK----PVFPISALTGEGLDELLYALAEL 327
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 0.002
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 27/109 (24%)
Query: 199 VVLMVVDA----ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
VVL+V+DA + D ++ A E RA +V+VV K DL+
Sbjct: 258 VVLLVIDATEGITEQD--------LRIAGLALEAGRA-----------LVIVVNKWDLVD 298
Query: 255 SSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303
E + ++ R + F+SA+ G+ L++ + +
Sbjct: 299 EK----TMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343
|
Length = 435 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 199 VVLMVVDAA----DFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
VVL+V+DA + D ++ A E +A +V+VV K DL+
Sbjct: 257 VVLLVLDATEGITEQD--------LRIAGLALEAGKA-----------LVIVVNKWDLVK 297
Query: 255 SSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302
E + ++ R+ + F+SA+ G+ L+D + ++
Sbjct: 298 DE---KTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 199 VVLMVVDA----ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
VVL+V+DA + D ++A +EGK+ +++VV K DL+
Sbjct: 87 VVLLVLDASEGITEQD----LRIA----------GLILEEGKA-----LIIVVNKWDLVE 127
Query: 255 SSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302
+ + ++ R+ + F+SA+ G+ L D + ++
Sbjct: 128 KD--EKTMKEFEKELRRKLPFLDYAPIVFISALTGQGVDKLFDAIKEV 173
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 28/80 (35%)
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR 361
+ G+R NAGKS+L+NA+ G++ IVS VPGTT V
Sbjct: 11 IFGRR---------NAGKSSLINALT----------GQDIAIVS-----DVPGTTTDPVY 46
Query: 362 --VEGVLPAQAKLF-DTPGL 378
+E +LP + DT GL
Sbjct: 47 KAME-LLPLGPVVLIDTAGL 65
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 243 VVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKIT-KLHFVSAVKNWGLKSLIDDVVD 301
V+V+ KIDLL + I + FVSA GL+ L +
Sbjct: 113 PVIVLNKIDLLDDEE--------AAVKELLREYEDIGYPVLFVSAKNGDGLEELAEL--- 161
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVDA 332
LAGK V G GKSTL+NA+ ++
Sbjct: 162 LAGKI-TVLL-GQSGVGKSTLINALLPELNQ 190
|
Length = 301 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 22/71 (30%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR----VEGVLP 367
+G+ N GKS+LLNA+ K +++ IVS + GTT +V + G+L
Sbjct: 209 VGSPNVGKSSLLNALLK----------QDRAIVSDI-----KGTTRDVVEGDFELNGIL- 252
Query: 368 AQAKLFDTPGL 378
KL DT G+
Sbjct: 253 --IKLLDTAGI 261
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| PRK13796 | 365 | GTPase YqeH; Provisional | 100.0 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 100.0 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.96 | |
| KOG1249 | 572 | consensus Predicted GTPases [General function pred | 99.95 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.91 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.88 | |
| KOG1249 | 572 | consensus Predicted GTPases [General function pred | 99.85 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.81 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.81 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.81 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.8 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.79 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.78 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.77 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.77 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.75 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.74 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.7 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 99.69 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.69 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.68 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.61 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.6 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 99.59 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.58 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.57 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.56 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.56 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.56 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.56 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 99.54 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.53 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 99.51 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.49 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.48 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.48 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.4 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.35 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.35 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.35 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.33 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.33 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.33 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.3 | |
| KOG2485 | 335 | consensus Conserved ATP/GTP binding protein [Gener | 99.3 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.29 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.27 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.25 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.25 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.25 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.24 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.24 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.23 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.23 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.22 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.21 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.2 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.2 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.2 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.2 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.2 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.2 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.19 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.19 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.19 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.19 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.18 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.18 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.17 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.17 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.17 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.17 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.17 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.17 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.17 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.17 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.16 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.16 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.16 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.16 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.16 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.16 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.16 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.15 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.15 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.15 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.15 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.15 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.15 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.15 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.14 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.14 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.14 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.14 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.14 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.14 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.14 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.14 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.14 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.14 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.14 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.13 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.13 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.13 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.13 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.13 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.13 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.13 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.13 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.12 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.12 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.12 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.12 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.12 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.12 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.12 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.12 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.12 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.12 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.12 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.12 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.12 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.11 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.11 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.11 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.1 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.1 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.1 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.1 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.1 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.1 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.1 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.1 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.09 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.09 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.09 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.09 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.09 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.09 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.09 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.09 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.09 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.09 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.09 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.08 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.08 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.08 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.08 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.08 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.08 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.07 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.07 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.07 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.07 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.07 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.07 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.07 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.07 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.06 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.06 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.06 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.06 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.06 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.06 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.06 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.06 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.06 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.06 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.06 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.06 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.05 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.05 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.05 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.05 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.05 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.05 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.05 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.05 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.05 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.04 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.04 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.04 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.04 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.04 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.04 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.04 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.04 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.03 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.03 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.03 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.03 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.03 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.02 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.02 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.02 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.02 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.02 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.02 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.02 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.02 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.02 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.01 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.01 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.01 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.01 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.01 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.01 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.01 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.01 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.01 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.01 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 98.99 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.99 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 98.99 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 98.99 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 98.99 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 98.99 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.99 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 98.99 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 98.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 98.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 98.98 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 98.98 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.98 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 98.98 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 98.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 98.98 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 98.98 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 98.98 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 98.98 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 98.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 98.97 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 98.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 98.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.97 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 98.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.97 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 98.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 98.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 98.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.97 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 98.97 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 98.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 98.96 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 98.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.96 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 98.96 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 98.96 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 98.96 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 98.96 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 98.96 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 98.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 98.95 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 98.95 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 98.95 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 98.95 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 98.95 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 98.95 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 98.95 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 98.94 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 98.94 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 98.94 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 98.94 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 98.94 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 98.94 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 98.93 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 98.93 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 98.93 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 98.93 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 98.93 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 98.93 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 98.93 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 98.92 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 98.92 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 98.92 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 98.92 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 98.91 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 98.91 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 98.91 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 98.9 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 98.9 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 98.9 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 98.9 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 98.9 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 98.9 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 98.89 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 98.89 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 98.89 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.89 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 98.88 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 98.88 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 98.88 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 98.88 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 98.88 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 98.88 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 98.88 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 98.88 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 98.88 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 98.87 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 98.87 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 98.87 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 98.87 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 98.87 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 98.87 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 98.87 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 98.87 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 98.86 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 98.86 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 98.86 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 98.86 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 98.86 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 98.86 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 98.85 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 98.85 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 98.85 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 98.85 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 98.84 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 98.84 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 98.84 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 98.84 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 98.84 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 98.84 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 98.84 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 98.84 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 98.83 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 98.83 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 98.83 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 98.83 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 98.83 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 98.82 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 98.82 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 98.82 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 98.82 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 98.82 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 98.81 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 98.81 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 98.81 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 98.8 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 98.8 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 98.79 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 98.79 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 98.79 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 98.78 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 98.77 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 98.77 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 98.76 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 98.76 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 98.75 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 98.74 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 98.74 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 98.72 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 98.72 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 98.68 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 98.66 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 98.66 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 98.65 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 98.65 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 98.63 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 98.63 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.63 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 98.62 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 98.62 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 98.61 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 98.59 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 98.59 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 98.58 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 98.58 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 98.57 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 98.56 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 98.55 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 98.55 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 98.54 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 98.53 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 98.53 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 98.52 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 98.52 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 98.51 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 98.5 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 98.5 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 98.5 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 98.49 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 98.48 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 98.47 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.46 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 98.43 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 98.42 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 98.41 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 98.4 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 98.4 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 98.39 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 98.39 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 98.37 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 98.36 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 98.35 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 98.34 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 98.34 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 98.33 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.32 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 98.31 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 98.3 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 98.29 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 98.29 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 98.26 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 98.26 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 98.25 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 98.22 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 98.19 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 98.19 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 98.18 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 98.15 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 98.15 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 98.15 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 98.15 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 98.14 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 98.13 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 98.12 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 98.12 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 98.11 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 98.11 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 98.11 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 98.09 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 98.08 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 98.08 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.08 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 98.08 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 98.07 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 98.07 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.07 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 98.06 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 98.05 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 98.05 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.05 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 98.05 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 98.05 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 98.04 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.04 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 98.01 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 98.0 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 98.0 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 97.98 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 97.98 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 97.98 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 97.98 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 97.96 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 97.96 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 97.95 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 97.93 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 97.92 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 97.92 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.92 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 97.91 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 97.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 97.9 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 97.9 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 97.88 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 97.88 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 97.88 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 97.87 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 97.87 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 97.86 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 97.82 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 97.82 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 97.8 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 97.8 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 97.79 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 97.79 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 97.78 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 97.78 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.78 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 97.78 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 97.77 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 97.77 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 97.77 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 97.77 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 97.77 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 97.77 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 97.76 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 97.76 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 97.75 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 97.75 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 97.75 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 97.74 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 97.74 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 97.72 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 97.72 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.72 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 97.72 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 97.72 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 97.71 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 97.71 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 97.71 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 97.71 |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=366.21 Aligned_cols=254 Identities=34% Similarity=0.641 Sum_probs=202.4
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||++.. .+ ++. .+...++|||||+
T Consensus 1 ~~C~GCG~~lq~~~~~~~Gy~p~~-----~~------------------~~~---------------~~~~~~~C~RC~~ 42 (365)
T PRK13796 1 LRCIGCGAAIQTEDKNKPGYAPAS-----AL------------------KKG---------------LETEEVYCQRCFR 42 (365)
T ss_pred CcccCCCceeEcCCCCCCCCCCHH-----Hh------------------hcc---------------cccCCeEchhhhh
Confidence 379999999999999999999641 11 110 0123689999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
|+|||++.++. +++++|.+.+ .+..+..++|++|||+.|+.+++.+.+.+++. + .
T Consensus 43 l~hy~~~~~~~----~~~~~~~~~l----~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~------------~-----k 97 (365)
T PRK13796 43 LKHYNEIQDVS----LTDDDFLKLL----NGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG------------N-----N 97 (365)
T ss_pred hhccCcccCCC----CCHHHHHHHH----HhhcccCcEEEEEEECccCCCchhHHHHHHhC------------C-----C
Confidence 99999988755 4566775422 22233455999999999999888777766543 1 2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
++++|+||+||++++...+.+.+|++.+.+..|. .+.+++.+||++++|+++|++.|.++. .++.+++||.+||||||
T Consensus 98 pviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~-~~~~v~~vSAk~g~gI~eL~~~I~~~~-~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 98 PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGL-RPVDVVLISAQKGHGIDELLEAIEKYR-EGRDVYVVGVTNVGKST 175 (365)
T ss_pred CEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCC-CcCcEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEcCCCCcHHH
Confidence 8999999999998765667788898887776663 234799999999999999999997664 34689999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|||+|++... | ....++++.+||||++.+.++ ++++..++||||+...+++.+.|+.++++.+.+.++
T Consensus 176 LiN~L~~~~~---~-------~~~~~~~s~~pGTT~~~~~~~--l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~ 243 (365)
T PRK13796 176 LINRIIKEIT---G-------EKDVITTSRFPGTTLDKIEIP--LDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKE 243 (365)
T ss_pred HHHHHHhhcc---C-------ccceEEecCCCCccceeEEEE--cCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcc
Confidence 9999996441 2 124578899999999998874 556679999999998889999999999999999999
Q ss_pred hcCCccccCCC
Q 015085 402 LKPRTYRIKVS 412 (413)
Q Consensus 402 l~~~~~~l~~~ 412 (413)
++|++|+|++.
T Consensus 244 i~p~~~~l~~g 254 (365)
T PRK13796 244 IKPKTYQLNEE 254 (365)
T ss_pred cCceEEEECCC
Confidence 99999999863
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=353.69 Aligned_cols=248 Identities=36% Similarity=0.698 Sum_probs=202.2
Q ss_pred CCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhhhh
Q 015085 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALR 163 (413)
Q Consensus 84 C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~l~ 163 (413)
|+||||.||++||++|||++... ++ .+.++|||||+|+
T Consensus 1 C~GCG~~lq~~d~~~~Gy~p~~~-----------------------~~-------------------~~~~~C~RC~~l~ 38 (360)
T TIGR03597 1 CIGCGAAIQTTDPKKPGYTPKSA-----------------------LE-------------------KEEVYCQRCFRLK 38 (360)
T ss_pred CCCCCceeEcCCCCCCCCCchHH-----------------------cC-------------------cCCeeecchhhhh
Confidence 99999999999999999996420 11 1268999999999
Q ss_pred hcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcE
Q 015085 164 HYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRV 243 (413)
Q Consensus 164 hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~v 243 (413)
|||++.+.. +++++|.+ .+......+++|++|+|+.|+++++.+.+.+++.. .++
T Consensus 39 hy~~~~~~~----~~~e~f~~----~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~-----------------~pi 93 (360)
T TIGR03597 39 HYNEIQDVE----LNDDDFLN----LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGG-----------------NPV 93 (360)
T ss_pred ccCccccCC----CCHHHHHH----HHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCC-----------------CCE
Confidence 999987764 35566654 23344567899999999999999988888776531 289
Q ss_pred EEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHH
Q 015085 244 VLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323 (413)
Q Consensus 244 ilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLi 323 (413)
++|+||+||+++....+.+.+|++++++..|. ...+++.+||++++|+++|++.+.++. .+.+++++|.+||||||||
T Consensus 94 ilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~-~~~~i~~vSAk~g~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 94 LLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL-KPVDIILVSAKKGNGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred EEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC-CcCcEEEecCCCCCCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHH
Confidence 99999999998766667888998877777664 234689999999999999999996654 3458999999999999999
Q ss_pred HHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhhc
Q 015085 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELK 403 (413)
Q Consensus 324 n~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~ 403 (413)
|+|++..... ....+++.+||||++.+.+. +.....++||||+...+++.+.|+..+++.+.+.+.++
T Consensus 172 N~l~~~~~~~----------~~~~~~s~~pgtT~~~~~~~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~ 239 (360)
T TIGR03597 172 NKLLKQNNGD----------KDVITTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIK 239 (360)
T ss_pred HHHHhhccCC----------cceeeecCCCCeEeeEEEEE--eCCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccC
Confidence 9999754211 12467899999999988774 55567899999999888999999999999999999999
Q ss_pred CCccccCCC
Q 015085 404 PRTYRIKVS 412 (413)
Q Consensus 404 ~~~~~l~~~ 412 (413)
+++|++++.
T Consensus 240 ~~~~~l~~~ 248 (360)
T TIGR03597 240 PKTYQLNPN 248 (360)
T ss_pred ceEEEeCCC
Confidence 999999863
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=226.69 Aligned_cols=189 Identities=40% Similarity=0.707 Sum_probs=136.6
Q ss_pred chhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcC
Q 015085 156 CARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEG 235 (413)
Q Consensus 156 C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~ 235 (413)
|+|||+|+|||++.... ++..++ +...+...++.+|+|++|+|+.+++.++...+.... .+
T Consensus 1 C~rC~~l~~~~~~~~~~----~~~~~~---~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~------------~~ 61 (190)
T cd01855 1 CQRCFRLKHYNKIDPVE----IPDEDF---ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFG------------GN 61 (190)
T ss_pred CcchhhhhccCcccccc----CChHHH---HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhc------------CC
Confidence 99999999999988654 334443 234455677889999999999998766555542111 12
Q ss_pred CCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH-HHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcC
Q 015085 236 KSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR-AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGA 314 (413)
Q Consensus 236 k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~-~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ 314 (413)
.++++|+||+|+++.......+..|.+.. .+..+. ....++.+||++++|+++|++.|.++...++.++++|.
T Consensus 62 -----~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 62 -----NPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL-KPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred -----CcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC-CcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 38999999999986544444555665211 122221 22468999999999999999999888777778999999
Q ss_pred CCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 315 QNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 315 ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
+|+|||||||+|.+...... ......+++..||||++...+. +.....++||||+
T Consensus 136 ~nvGKStliN~l~~~~~~~~-------~~~~~~~~~~~~gtT~~~~~~~--~~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKK-------KLKDLLTTSPIPGTTLDLIKIP--LGNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhccccc-------ccccccccCCCCCeeeeeEEEe--cCCCCEEEeCcCC
Confidence 99999999999997542111 0112356788899999988774 4446899999996
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG1249 consensus Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-30 Score=254.35 Aligned_cols=337 Identities=36% Similarity=0.474 Sum_probs=248.1
Q ss_pred cccccCCCCCCCCC--CCCCCCCCCC--ccccccC--CCCCccccCCcchhhhhhh--ccccccccchhhhhhhccCCce
Q 015085 65 SLALTRDGNYDEAT--PKLTVCPGCG--VLMQDTN--PKHPGYFIRPSQNLNKVRK--SHLVHVANESEFSNSLKKGGLV 136 (413)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~~C~GCG--~~lQ~~d--p~~pGY~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 136 (413)
-+|+.+.+.+++.. ...+.|+||| ..+|..+ +..||||.++..+...... ..+.+.+++.+.......+...
T Consensus 57 ~~P~~~~~~~~d~d~~~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~ 136 (572)
T KOG1249|consen 57 YLPLEIFLRLSERDGFLAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVG 136 (572)
T ss_pred CCchHhhccccccccccccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhccc
Confidence 37777888888777 5778999999 8888888 9999999875432211111 1223332222211111111100
Q ss_pred ec---cccccchhhhcCCCCccchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCc
Q 015085 137 VF---EAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSF 213 (413)
Q Consensus 137 ~~---~~~~~~~~~~~~~~~~~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~ 213 (413)
.. ..-..-+....+..+.+|+||+.+.||+.+.....++..|+++|.+...-++........+|+.|+|..||.+++
T Consensus 137 ~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf 216 (572)
T KOG1249|consen 137 SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDF 216 (572)
T ss_pred CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeeccCce
Confidence 00 000011123345568999999999999999999999989999998776666666666778999999999999998
Q ss_pred hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcc
Q 015085 214 PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLK 293 (413)
Q Consensus 214 ~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~ 293 (413)
.......+.+....|...+...++.+.+.++.+.|++|.++...+..++..|.....+..+..+.-.++.+++++.+|..
T Consensus 217 ~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r 296 (572)
T KOG1249|consen 217 YLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGER 296 (572)
T ss_pred eeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHH
Confidence 76655555443333333333334345568999999999998877777888887766666665445568889999999999
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLF 373 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~li 373 (413)
+++....-.....+.++.||.+++||+++||.|...+. | ..-.++.++.||||++.+++...+....+++
T Consensus 297 ~l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~---a-------~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~Y 366 (572)
T KOG1249|consen 297 DLLALETGDAGKAGPVAAVGRTFAGSEELINAMAKELH---A-------DVEALAEEPVPGTTLGIRRIEGIFKRGAWLY 366 (572)
T ss_pred HHHHhhhhccccccchHHhhhhhhccchhhhhhhhhhc---c-------chhccccCCCCcccccceeeeccccccceee
Confidence 88877756666777788899999999999999995542 2 3356778899999999998876677789999
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHhhhhcCCccccCC
Q 015085 374 DTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKV 411 (413)
Q Consensus 374 DtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~ 411 (413)
||||+.+++++...|..+|+..|.+++.|+|+||.++|
T Consensus 367 DTPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~vkp 404 (572)
T KOG1249|consen 367 DTPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRVKP 404 (572)
T ss_pred cCCCccChhhhhhhccHHHhhhcCcccccccceEEcCC
Confidence 99999999999999999999999999999999999986
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=208.24 Aligned_cols=204 Identities=30% Similarity=0.399 Sum_probs=156.8
Q ss_pred cchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhc
Q 015085 155 VCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKE 234 (413)
Q Consensus 155 ~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~ 234 (413)
.|+||++++||+.+.+. |.+.. ...+.+.+.+...|+|+.|+|++|+.++..+.+.+++...
T Consensus 1 ~~~~~~~~~~~~~i~~~------~g~~~--k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k---------- 62 (322)
T COG1161 1 QCQRCFRLKHYNKIQWF------PGHMK--KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEK---------- 62 (322)
T ss_pred CchhhhHHHhcccccCC------CCchH--HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccC----------
Confidence 49999999999987763 33322 2335667788899999999999999999999998887632
Q ss_pred CCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhc--------cchhhhccc-
Q 015085 235 GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI--------DDVVDLAGK- 305 (413)
Q Consensus 235 ~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll--------~~I~~l~~~- 305 (413)
+.++|+||+||++. ...++|.+.+.+..+ ...+.+++..+.+...+. +.+..+...
T Consensus 63 -------~~i~vlNK~DL~~~----~~~~~W~~~~~~~~~----~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 127 (322)
T COG1161 63 -------PKLLVLNKADLAPK----EVTKKWKKYFKKEEG----IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKG 127 (322)
T ss_pred -------CcEEEEehhhcCCH----HHHHHHHHHHHhcCC----CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcC
Confidence 66999999999976 458899988776544 246778888888877666 444333332
Q ss_pred ----CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 306 ----RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 306 ----~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
...+++||.+|||||||||+|++.. .++++..||+|.+...+ .+.....|+||||+..+
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~---------------~~~~s~~PG~Tk~~q~i--~~~~~i~LlDtPGii~~ 190 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKK---------------VAKTSNRPGTTKGIQWI--KLDDGIYLLDTPGIIPP 190 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhccc---------------ceeeCCCCceecceEEE--EcCCCeEEecCCCcCCC
Confidence 1468889999999999999999543 36788999999998877 46777899999999976
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCccccCC
Q 015085 382 NQITTRLTREEQKLVNINKELKPRTYRIKV 411 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~ 411 (413)
+...+ ......+.+..+|+..+|+++.
T Consensus 191 ~~~~~---~~v~~~l~~~~~Ik~~~~~~~~ 217 (322)
T COG1161 191 KFDDD---ELVLLKLAPKGEIKDPVLPADE 217 (322)
T ss_pred Cccch---HHHhhccccccccCccccChHH
Confidence 65544 4456667788888888887653
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=176.08 Aligned_cols=151 Identities=28% Similarity=0.378 Sum_probs=112.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
++++++++|+|++|+|+.++..+.+..+.+++... ..+ .|+++|+||+|++++ +.+..|+..+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~--------~~~-----~p~ilVlNKiDl~~~----~~~~~~~~~~ 64 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE--------KPH-----KHLIFVLNKCDLVPT----WVTARWVKIL 64 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc--------cCC-----CCEEEEEEchhcCCH----HHHHHHHHHH
Confidence 35677889999999999998777777777777531 012 389999999999854 3456676654
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc-----cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-----KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~-----~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v 344 (413)
.+.. .+ .++.+||++++|.++|++.+.++.. .+-.++++|.+|+|||||||+|.+..
T Consensus 65 ~~~~---~~-~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~-------------- 126 (157)
T cd01858 65 SKEY---PT-IAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK-------------- 126 (157)
T ss_pred hcCC---cE-EEEEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC--------------
Confidence 4322 22 3678999999999999998866531 22246679999999999999999532
Q ss_pred ccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 345 SHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 345 ~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
..+++..||+|+....+. +.....++||||+
T Consensus 127 -~~~~~~~~g~T~~~~~~~--~~~~~~liDtPGi 157 (157)
T cd01858 127 -VCKVAPIPGETKVWQYIT--LMKRIYLIDCPGV 157 (157)
T ss_pred -ceeeCCCCCeeEeEEEEE--cCCCEEEEECcCC
Confidence 345678899999876553 5566899999996
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG1249 consensus Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=195.04 Aligned_cols=246 Identities=25% Similarity=0.419 Sum_probs=173.1
Q ss_pred ccccccCCCCCCCCCCCCCcccccCCCCCCCCCC-CCCCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccch
Q 015085 46 SSSSFSSQPTNTAPPPLSSSLALTRDGNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANES 124 (413)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~ 124 (413)
+.+|+.+.+.-| .+.|+.++..| +...|.|||+.+++++.+.|||++.. .|.. .++..
T Consensus 12 ~~~f~~~~pe~p-----------~~~~~~~~~~p~~~v~c~~~~~~~~c~s~s~~~~~P~~-----~~~~-----~~d~d 70 (572)
T KOG1249|consen 12 LETFSTGQPEEP-----------NRQGTPDPRLPASSVNCSGCGAELHCQSASSPGYLPLE-----IFLR-----LSERD 70 (572)
T ss_pred hhhhcccCCCCC-----------ccCCCCCcCCCCccceecCCCceEEEeccCCCCCCchH-----hhcc-----ccccc
Confidence 455555555555 56689999998 88999999999999999999998542 2221 01100
Q ss_pred hhhhhhccCCceeccccccchhhhcCCCCccchhhhhhhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEE
Q 015085 125 EFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVV 204 (413)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~Vv 204 (413)
+ .-...+|+||+.|.||+...++.+ .|. .+.+.+. ++.++..++.+|+
T Consensus 71 ~------------------------~~~~~~cpgc~~l~~~~~~~~~~v---~~~-~y~k~~~----~~~~~~~~~~~vv 118 (572)
T KOG1249|consen 71 G------------------------FLAAIVCPGCGFLEHMRAALAVPV---VPG-EYKKEKS----EKQENPALARKVV 118 (572)
T ss_pred c------------------------ccccccCCcchHHHHhhhhccCcc---Chh-hhhhhhh----hhhhcccceEEee
Confidence 0 123589999999999998665432 222 3333222 2233357889999
Q ss_pred eCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH----HHHHHcCCC----
Q 015085 205 DAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR----QRAREDGIS---- 276 (413)
Q Consensus 205 D~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~----~~~~~~g~~---- 276 (413)
|..|++.+.++.+...+.. +..++++||+|+++.+...-....... .+.++.+..
T Consensus 119 d~~d~p~~i~p~~~~~v~~-----------------~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p 181 (572)
T KOG1249|consen 119 DLSDEPCSIDPLLTNDVGS-----------------PRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNP 181 (572)
T ss_pred ecccCccccccchhhcccC-----------------CceEeeccccccccccccchHHHHHHhhcccceeecccccCCCc
Confidence 9999999888777776642 247999999999987543222211111 011111111
Q ss_pred --ccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 277 --KITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 277 --~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
.|..+..++++++||+++|+-.|.+....+|+++.+|++|+||||++|+|+..... ++ ...+.+...|++.|||
T Consensus 182 ~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c-~~---~~p~lVd~aT~~dwpg 257 (572)
T KOG1249|consen 182 DFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDFYLVGATNVGKSTLFNALLESDLC-SV---NAPKLVDRATISDWPG 257 (572)
T ss_pred ccchhhhhhhhhhhcccHHHHHHHhhheeeccCceeeeeecccchhhHHHHHhhhccc-cc---cccceeeeeecccCCc
Confidence 24567789999999999999999888888999999999999999999999987744 33 2234667889999999
Q ss_pred CeeeeEeeccc
Q 015085 355 TTLGIVRVEGV 365 (413)
Q Consensus 355 tT~~~i~~~~~ 365 (413)
||+...+++..
T Consensus 258 Ttlsllkfpv~ 268 (572)
T KOG1249|consen 258 TTLSLLKFPVL 268 (572)
T ss_pred cccchhhCccc
Confidence 99999887643
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=179.67 Aligned_cols=188 Identities=24% Similarity=0.352 Sum_probs=122.9
Q ss_pred CCccchhhhhhhhcCcccc----ccc------------ccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchH
Q 015085 152 KPVVCARCHALRHYGKVKD----VTV------------ENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPR 215 (413)
Q Consensus 152 ~~~~C~RC~~l~hy~~~~~----~~i------------~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~ 215 (413)
..+.|.+|.++++++.... +.+ +.++|+.... ...++..+|+|++|+|+.++... ..
T Consensus 35 ~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L------~R~~~aNvD~vLlV~d~~~p~~~-~~ 107 (352)
T PRK12289 35 SLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTEL------DRPPVANADQILLVFALAEPPLD-PW 107 (352)
T ss_pred eEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEeccccce------echhhhcCCEEEEEEECCCCCCC-HH
Confidence 3578999999998775321 111 1223333322 11246779999999999875432 23
Q ss_pred HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchh
Q 015085 216 KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSL 295 (413)
Q Consensus 216 ~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~L 295 (413)
.+.+++... +..++ ++++|+||+||+.. ..+..|... ++..| ..++.+||.++.|+++|
T Consensus 108 ~LdR~L~~a-------~~~~i-----p~ILVlNK~DLv~~----~~~~~~~~~-~~~~g----~~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 108 QLSRFLVKA-------ESTGL-----EIVLCLNKADLVSP----TEQQQWQDR-LQQWG----YQPLFISVETGIGLEAL 166 (352)
T ss_pred HHHHHHHHH-------HHCCC-----CEEEEEEchhcCCh----HHHHHHHHH-HHhcC----CeEEEEEcCCCCCHHHH
Confidence 556666532 11233 89999999999743 345666543 34444 36899999999999999
Q ss_pred ccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccc
Q 015085 296 IDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDT 375 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDt 375 (413)
++.+.. ..++++|++|||||||||.|++......|.+......++| ||.+...+ .++.+..++||
T Consensus 167 ~~~L~~-----ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrH--------TT~~~~l~--~l~~g~~liDT 231 (352)
T PRK12289 167 LEQLRN-----KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRH--------TTRHVELF--ELPNGGLLADT 231 (352)
T ss_pred hhhhcc-----ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCC--------cCceeEEE--ECCCCcEEEeC
Confidence 988732 2356699999999999999998776555644433333333 55544333 35555799999
Q ss_pred ccccCCC
Q 015085 376 PGLLHPN 382 (413)
Q Consensus 376 pGl~~~~ 382 (413)
||+....
T Consensus 232 PG~~~~~ 238 (352)
T PRK12289 232 PGFNQPD 238 (352)
T ss_pred CCccccc
Confidence 9997644
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-20 Score=181.90 Aligned_cols=165 Identities=26% Similarity=0.308 Sum_probs=129.3
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
+.|.+.|.+++..++.+||+|++|||+.......+..+.++|... + +|+++|+||+|-....
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~-----kpviLvvNK~D~~~~e--- 128 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS----------K-----KPVILVVNKIDNLKAE--- 128 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEEcccCchhh---
Confidence 468888999999999999999999999998888899999988742 2 3999999999976221
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc-c-----c-----CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA-G-----K-----RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~-~-----~-----~g~~~~vG~ng~GKSTLin~L~g 328 (413)
....+| -.. ++.+++.+||.+|.|+.+|++.+...+ . . ..++.++|.+|+|||||+|+|+|
T Consensus 129 ~~~~ef-----ysl---G~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilg 200 (444)
T COG1160 129 ELAYEF-----YSL---GFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILG 200 (444)
T ss_pred hhHHHH-----Hhc---CCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhcc
Confidence 111111 123 457899999999999999999987764 1 1 24677899999999999999996
Q ss_pred cCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccCCCCCC
Q 015085 329 SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 329 ~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~~~~~~ 385 (413)
.. .+-+++.+|||++.+...+..++ ...++||.|+.+..++.
T Consensus 201 ee---------------R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~ 243 (444)
T COG1160 201 EE---------------RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKIT 243 (444)
T ss_pred Cc---------------eEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccc
Confidence 43 34568899999999988765544 46899999998654443
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=157.77 Aligned_cols=141 Identities=30% Similarity=0.451 Sum_probs=102.0
Q ss_pred cEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 198 SVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 198 dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
|+|++|+|+.++..+....+. ..+.. .+ .|+++|+||+|++++ +.+..|+..+.+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~----------~~-----~p~IiVlNK~Dl~~~----~~~~~~~~~~~~~~--- 58 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE----------KG-----KKLILVLNKADLVPK----EVLRKWLAYLRHSY--- 58 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc----------CC-----CCEEEEEechhcCCH----HHHHHHHHHHHhhC---
Confidence 789999999988777666555 23221 12 389999999999753 44567764443222
Q ss_pred ccceEEEeEEEeecCcchhccchhhh-------------cccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc
Q 015085 277 KITKLHFVSAVKNWGLKSLIDDVVDL-------------AGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (413)
Q Consensus 277 ~~~~V~~vSa~~~~Gi~~Ll~~I~~l-------------~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~ 343 (413)
...++.+||.++.|+++|.+.+.+. ......++++|.+|+|||||||+|++...
T Consensus 59 -~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~------------ 125 (155)
T cd01849 59 -PTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK------------ 125 (155)
T ss_pred -CceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc------------
Confidence 2468999999999999998877432 22334577799999999999999996431
Q ss_pred cccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 344 v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
..++..+|||.+...+. +.....++||||+
T Consensus 126 ---~~~~~~~~~t~~~~~~~--~~~~~~liDtPG~ 155 (155)
T cd01849 126 ---LKVGNVPGTTTSQQEVK--LDNKIKLLDTPGI 155 (155)
T ss_pred ---ccccCCCCcccceEEEE--ecCCEEEEECCCC
Confidence 22466789998876653 4456899999996
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=171.02 Aligned_cols=175 Identities=25% Similarity=0.309 Sum_probs=123.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
..+.+.+.++.+|+||+|+|++++..+....+.+++. + +|+++|+||+||.+. ...+.|
T Consensus 14 ~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~------------~-----kp~iiVlNK~DL~~~----~~~~~~ 72 (287)
T PRK09563 14 ARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG------------N-----KPRLLILNKSDLADP----EVTKKW 72 (287)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC------------C-----CCEEEEEEchhcCCH----HHHHHH
Confidence 3466788899999999999999887776666666543 2 289999999999743 345667
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-------------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-------------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+.+. ..+ ..++.+|+.++.|++.|++.+.++... ...++++|.+|||||||||+|.+..
T Consensus 73 ~~~~~-~~~----~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~-- 145 (287)
T PRK09563 73 IEYFE-EQG----IKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKK-- 145 (287)
T ss_pred HHHHH-HcC----CeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCC--
Confidence 65442 222 357899999999999988877655321 1247779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhhcCCcc
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTY 407 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~~ 407 (413)
...++..||+|.+...+ .+.....++||||+..+. ..+.....++++...++...+
T Consensus 146 -------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtPGi~~~~----~~~~~~~~~l~~~~~i~~~~~ 201 (287)
T PRK09563 146 -------------IAKTGNRPGVTKAQQWI--KLGKGLELLDTPGILWPK----LEDQEVGLKLALTGAIKDEAL 201 (287)
T ss_pred -------------ccccCCCCCeEEEEEEE--EeCCcEEEEECCCcCCCC----CCcHHHHHHHHHhCCcchhhc
Confidence 23557789999987654 355678999999997543 122223334555555554433
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=168.08 Aligned_cols=153 Identities=27% Similarity=0.348 Sum_probs=114.6
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
..+++.+.++.+|+|++|+|++++..+.+..+.+++. + +|+++|+||+||.+. .....|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~------------~-----kp~IiVlNK~DL~~~----~~~~~~ 69 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG------------N-----KPRLIVLNKADLADP----AVTKQW 69 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC------------C-----CCEEEEEEccccCCH----HHHHHH
Confidence 4467788899999999999999887777777766553 2 289999999999743 335667
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-------------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-------------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+.. +..+ ..++.+|+.++.|++.|++.+.++... ...++++|.+|+|||||||.|.+..
T Consensus 70 ~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~-- 142 (276)
T TIGR03596 70 LKYF-EEKG----IKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKK-- 142 (276)
T ss_pred HHHH-HHcC----CeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCC--
Confidence 6543 2222 368899999999999998888655432 1247779999999999999998532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
...++..||+|+....+ .+.....++||||+..+
T Consensus 143 -------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 143 -------------VAKVGNRPGVTKGQQWI--KLSDGLELLDTPGILWP 176 (276)
T ss_pred -------------ccccCCCCCeecceEEE--EeCCCEEEEECCCcccC
Confidence 23446789999887655 34556899999999754
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=148.91 Aligned_cols=138 Identities=26% Similarity=0.425 Sum_probs=100.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+.++++.+|+|++|+|+.++....+..+.+++... ..+ +|+++|+||+|++++ ..+..|.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~~-----k~~iivlNK~DL~~~----~~~~~~~~ 65 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DPR-----KKNILLLNKADLLTE----EQRKAWAE 65 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cCC-----CcEEEEEechhcCCH----HHHHHHHH
Confidence 4566788899999999999998777777777776531 012 389999999999753 33445544
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~ 347 (413)
. ++..+ ..++.+||.++.+ .++++|.+|+|||||+|+|++.. ..
T Consensus 66 ~-~~~~~----~~ii~iSa~~~~~----------------~~~~~G~~~vGKstlin~l~~~~---------------~~ 109 (141)
T cd01857 66 Y-FKKEG----IVVVFFSALKENA----------------TIGLVGYPNVGKSSLINALVGKK---------------KV 109 (141)
T ss_pred H-HHhcC----CeEEEEEecCCCc----------------EEEEECCCCCCHHHHHHHHhCCC---------------ce
Confidence 3 33333 3688999987754 57789999999999999999532 12
Q ss_pred cccCCCCCeeeeEeecccccccccccccccccC
Q 015085 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 348 t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++..+|+|+....+ .++....++||||+..
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~i~DtpG~~~ 140 (141)
T cd01857 110 SVSATPGKTKHFQTI--FLTPTITLCDCPGLVF 140 (141)
T ss_pred eeCCCCCcccceEEE--EeCCCEEEEECCCcCC
Confidence 355668888776554 3455689999999964
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=152.94 Aligned_cols=152 Identities=26% Similarity=0.362 Sum_probs=108.6
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 185 TVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 185 ~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
...+++.+.++++|+|++|+|+.++....+..+.+.+. + .++++|+||+|+++. .....
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~------------~-----k~~ilVlNK~Dl~~~----~~~~~ 66 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG------------N-----KPRIIVLNKADLADP----KKTKK 66 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc------------C-----CCEEEEEehhhcCCh----HHHHH
Confidence 34567788899999999999998876655544444332 2 289999999999743 33445
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc------------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG------------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~------------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
|.+.+ +..+ ..++.+|++++.|+++|.+.+..... ..-.++++|.+|+|||||+|.|.+..
T Consensus 67 ~~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~-- 139 (171)
T cd01856 67 WLKYF-ESKG----EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK-- 139 (171)
T ss_pred HHHHH-HhcC----CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC--
Confidence 55332 2222 46889999999999999988866531 11256779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
..+++..+|||.+...+. +.....++||||+.
T Consensus 140 -------------~~~~~~~~~~T~~~~~~~--~~~~~~~iDtpG~~ 171 (171)
T cd01856 140 -------------VAKVGNKPGVTKGIQWIK--ISPGIYLLDTPGIL 171 (171)
T ss_pred -------------ceeecCCCCEEeeeEEEE--ecCCEEEEECCCCC
Confidence 234567789998876654 33567899999984
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=156.52 Aligned_cols=145 Identities=29% Similarity=0.458 Sum_probs=99.3
Q ss_pred cEEEEEEeCCCCCCCchHHHHHHh--hhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 198 SVVLMVVDAADFDGSFPRKVAKMV--SDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 198 dlVl~VvD~~d~~~s~~~~l~~~l--~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
|+|++|+|++++.++.++.+.+.+ ... + +|+|+|+||+||+++ +.+..|++.+.+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~----------~-----kp~IlVlNK~DL~~~----~~l~~~~~~~~~~~~~ 61 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGG----------N-----KKLVLVLNKIDLVPK----ENVEKWLKYLRREFPT 61 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccC----------C-----CCEEEEEehhhcCCH----HHHHHHHHHHHhhCCE
Confidence 789999999998888888887763 211 2 389999999999854 5677888766543310
Q ss_pred Ccc--------------------ceEEEeEEEeecCcchhccchhhhcccC-----CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 276 SKI--------------------TKLHFVSAVKNWGLKSLIDDVVDLAGKR-----GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 276 ~~~--------------------~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~-----g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+ ....++|+..++|.+.+++.+.++...+ ..++++|.+|+|||||||+|.+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~ 141 (172)
T cd04178 62 VAFKASTQSQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSR 141 (172)
T ss_pred EEEEecccccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 000 0112334455556666655554433222 367779999999999999999532
Q ss_pred cCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc
Q 015085 331 DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 331 ~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
...++..||+|.+...+. +.....++||||+
T Consensus 142 ---------------~~~~~~~pg~T~~~~~~~--~~~~~~l~DtPGi 172 (172)
T cd04178 142 ---------------ACNVGATPGVTKSMQEVH--LDKKVKLLDSPGI 172 (172)
T ss_pred ---------------cceecCCCCeEcceEEEE--eCCCEEEEECcCC
Confidence 235577899999876653 4456889999996
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=146.34 Aligned_cols=145 Identities=32% Similarity=0.503 Sum_probs=100.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
..+++|+|++|+|+.++....+..+.+++... + .|+++|+||+|+++. .....|. ...+.
T Consensus 9 i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~----------~-----~p~iiv~NK~Dl~~~----~~~~~~~-~~~~~ 68 (156)
T cd01859 9 IIKESDVVLEVLDARDPELTRSRKLERYVLEL----------G-----KKLLIVLNKADLVPK----EVLEKWK-SIKES 68 (156)
T ss_pred HHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC----------C-----CcEEEEEEhHHhCCH----HHHHHHH-HHHHh
Confidence 34458999999999887666565555544321 3 389999999999743 2334443 22222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhccc---CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~---~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
.+ ..++.+||+++.|+++|++.+.++... ...++++|.+|+|||||+|.|.+.. ...+
T Consensus 69 ~~----~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~---------------~~~~ 129 (156)
T cd01859 69 EG----IPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH---------------SAST 129 (156)
T ss_pred CC----CcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC---------------cccc
Confidence 22 358999999999999999998766533 3356679999999999999998422 2234
Q ss_pred cCCCCCeeeeEeecccccccccccccccc
Q 015085 350 APVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (413)
Q Consensus 350 s~~pgtT~~~i~~~~~l~~~~~liDtpGl 378 (413)
++.+|+|.....+ ..+....++||||+
T Consensus 130 ~~~~~~t~~~~~~--~~~~~~~~~DtpGi 156 (156)
T cd01859 130 SPSPGYTKGEQLV--KITSKIYLLDTPGV 156 (156)
T ss_pred CCCCCeeeeeEEE--EcCCCEEEEECcCC
Confidence 5667888765433 23446789999996
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=155.95 Aligned_cols=163 Identities=21% Similarity=0.215 Sum_probs=108.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....+|.+++|+|+.++..++ ..+.+++.... ..+ .++++|+||+||.+.. ....+|.+.+ +.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~-------~~~-----i~~vIV~NK~DL~~~~---~~~~~~~~~~-~~ 95 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAE-------AQN-----IEPIIVLNKIDLLDDE---DMEKEQLDIY-RN 95 (245)
T ss_pred ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHH-------HCC-----CCEEEEEECcccCCCH---HHHHHHHHHH-HH
Confidence 356789999999999876554 34566654321 113 3899999999997532 2223454433 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|++.+. +..++++|.+|||||||||.|++......|++......+
T Consensus 96 ~g----~~v~~~SAktg~gi~eLf~~l~-----~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G-------- 158 (245)
T TIGR00157 96 IG----YQVLMTSSKNQDGLKELIEALQ-----NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLG-------- 158 (245)
T ss_pred CC----CeEEEEecCCchhHHHHHhhhc-----CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCC--------
Confidence 33 3689999999999999998773 234566999999999999999987766666433222222
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
.+||.+...+. + .+..++||||+.... ...++.++..
T Consensus 159 ~hTT~~~~l~~--l-~~~~liDtPG~~~~~--l~~~~~~~~~ 195 (245)
T TIGR00157 159 KHTTTHVELFH--F-HGGLIADTPGFNEFG--LWHLEPEQLT 195 (245)
T ss_pred CCcCCceEEEE--c-CCcEEEeCCCccccC--CCCCCHHHHH
Confidence 34666554443 3 356899999997532 3446655543
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-16 Score=153.12 Aligned_cols=165 Identities=26% Similarity=0.261 Sum_probs=107.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.++... ...+.+++.... ..++ |+++|+||+||... ......|... ++.
T Consensus 77 iaaniD~vllV~d~~~p~~~-~~~idr~L~~~~-------~~~i-----p~iIVlNK~DL~~~---~~~~~~~~~~-~~~ 139 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFS-TDLLDRFLVLAE-------ANGI-----KPIIVLNKIDLLDD---LEEARELLAL-YRA 139 (298)
T ss_pred eeecCCEEEEEEECCCCCCC-HHHHHHHHHHHH-------HCCC-----CEEEEEEhHHcCCC---HHHHHHHHHH-HHH
Confidence 35788999999999875432 334455554321 1233 89999999999632 2334445433 333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|++.+. +..++++|++|||||||||+|++......|.+......+.+
T Consensus 140 ~g----~~v~~vSA~~g~gi~~L~~~l~-----gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~h------ 204 (298)
T PRK00098 140 IG----YDVLELSAKEGEGLDELKPLLA-----GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKH------ 204 (298)
T ss_pred CC----CeEEEEeCCCCccHHHHHhhcc-----CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCc------
Confidence 44 3689999999999999988762 22455599999999999999999888777754432222222
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL 395 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~ 395 (413)
||.....+ .++....++||||+...+ ...++..+...
T Consensus 205 --tT~~~~~~--~~~~~~~~~DtpG~~~~~--~~~~~~~~~~~ 241 (298)
T PRK00098 205 --TTTHVELY--DLPGGGLLIDTPGFSSFG--LHDLEAEELEH 241 (298)
T ss_pred --ccccEEEE--EcCCCcEEEECCCcCccC--CCCCCHHHHHH
Confidence 44333222 244567999999997532 33466665444
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=150.33 Aligned_cols=165 Identities=24% Similarity=0.288 Sum_probs=113.4
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...|-+++|+.+.+++.+ ...+.++|... +..|. ..++|+||+||++..... .+++. ...+..|
T Consensus 78 ~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~a-------e~~gi-----~pvIvlnK~DL~~~~~~~--~~~~~-~~y~~~g 141 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-TNLLDRYLVLA-------EAGGI-----EPVIVLNKIDLLDDEEAA--VKELL-REYEDIG 141 (301)
T ss_pred cccceEEEEEeccCCCCC-HHHHHHHHHHH-------HHcCC-----cEEEEEEccccCcchHHH--HHHHH-HHHHhCC
Confidence 346778888888887765 34566776543 22344 578889999999653111 12222 2344455
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
..++.+|++.+.|+++|.+.+ .++-.+++|.+|||||||+|+|.+......|++++....++|.|+.
T Consensus 142 ----y~v~~~s~~~~~~~~~l~~~l-----~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~---- 208 (301)
T COG1162 142 ----YPVLFVSAKNGDGLEELAELL-----AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH---- 208 (301)
T ss_pred ----eeEEEecCcCcccHHHHHHHh-----cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce----
Confidence 478999999999999988877 2234455999999999999999998877778777666666554433
Q ss_pred CeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHH
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLV 396 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v 396 (413)
...+ .++.+++++||||+.... ...+..++....
T Consensus 209 ----~~l~--~l~~gG~iiDTPGf~~~~--l~~~~~e~l~~~ 242 (301)
T COG1162 209 ----VELF--PLPGGGWIIDTPGFRSLG--LAHLEPEDLVQA 242 (301)
T ss_pred ----EEEE--EcCCCCEEEeCCCCCccC--cccCCHHHHHHH
Confidence 3233 356789999999997543 356777775543
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=152.24 Aligned_cols=164 Identities=26% Similarity=0.238 Sum_probs=108.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.++..+ ...+.+++... ...++ |+++|+||+||.+. .....|... ...
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~-------~~~~i-----p~iIVlNK~DL~~~----~~~~~~~~~-~~~ 136 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLVAA-------EAAGI-----EPVIVLTKADLLDD----EEEELELVE-ALA 136 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHH-------HHcCC-----CEEEEEEHHHCCCh----HHHHHHHHH-HHh
Confidence 36678999999999876522 23455555432 11133 89999999999754 122233322 222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~ 352 (413)
.| ..++.+||+++.|+++|...+. +..+.++|++|+|||||||+|+|...+..|.+.. +...-
T Consensus 137 ~g----~~v~~vSA~~g~gi~~L~~~L~-----~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~--------~~~~g 199 (287)
T cd01854 137 LG----YPVLAVSAKTGEGLDELREYLK-----GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE--------KLGRG 199 (287)
T ss_pred CC----CeEEEEECCCCccHHHHHhhhc-----cceEEEECCCCCCHHHHHHHHhchhhccccceec--------cCCCC
Confidence 33 3689999999999999888773 2346669999999999999999988877774331 11223
Q ss_pred CCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHH
Q 015085 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL 395 (413)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~ 395 (413)
.+||.....+ .+.....++||||+.... ...++..+...
T Consensus 200 ~~tT~~~~~~--~~~~~~~liDtPG~~~~~--~~~~~~~~~~~ 238 (287)
T cd01854 200 RHTTTHRELF--PLPGGGLLIDTPGFREFG--LLHIDPEELAH 238 (287)
T ss_pred CcccceEEEE--EcCCCCEEEECCCCCccC--CccCCHHHHHH
Confidence 4566665444 344457899999996532 23466666443
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=155.07 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...|.+++|.+.. ++.+ ...+.+++... +..++ ++++|+||+||++.. ....+..|... ++..|
T Consensus 119 ANvD~vlIV~s~~-p~~s-~~~Ldr~L~~a-------~~~~i-----~~VIVlNK~DL~~~~-~~~~~~~~~~~-y~~~g 182 (347)
T PRK12288 119 ANIDQIVIVSAVL-PELS-LNIIDRYLVAC-------ETLGI-----EPLIVLNKIDLLDDE-GRAFVNEQLDI-YRNIG 182 (347)
T ss_pred EEccEEEEEEeCC-CCCC-HHHHHHHHHHH-------HhcCC-----CEEEEEECccCCCcH-HHHHHHHHHHH-HHhCC
Confidence 4578888777753 3333 34556665432 11233 889999999998642 11234455443 23343
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
..++.+||.++.|+++|++.+.. .-++++|.+|||||||||+|++......|++......++|
T Consensus 183 ----~~v~~vSA~tg~GideL~~~L~~-----ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrH-------- 245 (347)
T PRK12288 183 ----YRVLMVSSHTGEGLEELEAALTG-----RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQH-------- 245 (347)
T ss_pred ----CeEEEEeCCCCcCHHHHHHHHhh-----CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcC--------
Confidence 37899999999999999988732 2466699999999999999998877666755544444444
Q ss_pred CeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
||.....+ .++.+..++||||+.... +..++..+..
T Consensus 246 TT~~~~l~--~l~~~~~liDTPGir~~~--l~~~~~~~l~ 281 (347)
T PRK12288 246 TTTAARLY--HFPHGGDLIDSPGVREFG--LWHLEPEQVT 281 (347)
T ss_pred ceeeEEEE--EecCCCEEEECCCCCccc--CCCCCHHHHH
Confidence 33333222 344567899999997533 2335544443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-15 Score=151.27 Aligned_cols=159 Identities=26% Similarity=0.294 Sum_probs=112.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+......
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~----------~~-----piilVvNK~D~~~~~~~--- 125 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS----------GK-----PVILVANKIDGKKEDAV--- 125 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh----------CC-----CEEEEEECccCCccccc---
Confidence 4455666777788999999999999986555566677776542 33 89999999998754211
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC----------CcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR----------GNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~----------g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
..+ +...| +.+++.+||.++.|+.++++.+.+..... -++.++|.+|+|||||+|.|++..
T Consensus 126 ~~~-----~~~lg---~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~- 196 (429)
T TIGR03594 126 AAE-----FYSLG---FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE- 196 (429)
T ss_pred HHH-----HHhcC---CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC-
Confidence 111 11233 45789999999999999998887655321 246779999999999999999532
Q ss_pred CCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 332 ~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+....... ....++||||+...
T Consensus 197 --------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~ 233 (429)
T TIGR03594 197 --------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRK 233 (429)
T ss_pred --------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCcccc
Confidence 1234567899987765433222 24679999998643
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=153.23 Aligned_cols=157 Identities=29% Similarity=0.330 Sum_probs=106.5
Q ss_pred hHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH
Q 015085 183 DHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF 262 (413)
Q Consensus 183 ~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l 262 (413)
.+.+...+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... .+..
T Consensus 104 ~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~----------~-----~piilV~NK~Dl~~~~--~~~~ 166 (472)
T PRK03003 104 QASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS----------G-----KPVILAANKVDDERGE--ADAA 166 (472)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECccCCccc--hhhH
Confidence 334555566678899999999999986544455566655431 3 3999999999986431 1111
Q ss_pred HHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc----------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 263 EHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK----------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 263 ~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~----------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
+.| ..| +..++.+||++|.|+++|++.|.+.... .-.+.++|.+|||||||+|+|++..
T Consensus 167 ~~~------~~g---~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~-- 235 (472)
T PRK03003 167 ALW------SLG---LGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE-- 235 (472)
T ss_pred HHH------hcC---CCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC--
Confidence 111 223 2456789999999999998888655432 1256779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
...++..+|||++.+....... ....++||||+..
T Consensus 236 -------------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 236 -------------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred -------------cccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 1234567899987654332222 2457999999864
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-15 Score=143.67 Aligned_cols=155 Identities=30% Similarity=0.476 Sum_probs=110.0
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 187 ~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
.+.+...++.+||||.|+||+|+.++....+.+++... .| + +.+|+|+||+||+|. +.++.|+
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~---------~g---n-KkLILVLNK~DLVPr----Ev~e~Wl 199 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA---------HG---N-KKLILVLNKIDLVPR----EVVEKWL 199 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc---------cC---C-ceEEEEeehhccCCH----HHHHHHH
Confidence 34555667779999999999999999999999888532 12 2 389999999999987 6789999
Q ss_pred HHHHHHcCCCccceEEEeEEEee-------------cCcchhccchhhhccc---C--CcEEEEcCCCCcHHHHHHHHHc
Q 015085 267 RQRAREDGISKITKLHFVSAVKN-------------WGLKSLIDDVVDLAGK---R--GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~-------------~Gi~~Ll~~I~~l~~~---~--g~~~~vG~ng~GKSTLin~L~g 328 (413)
.++.+.. ..|.+..+... .|.+.|+..+.++... + -.+.++|-+|+||||+||+|..
T Consensus 200 ~YLr~~~-----ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~ 274 (435)
T KOG2484|consen 200 VYLRREG-----PTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKR 274 (435)
T ss_pred HHHHhhC-----CcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHH
Confidence 8765543 23444333222 2334444444333322 1 1455699999999999999985
Q ss_pred cCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 329 SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 329 ~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
... -.+...||.|..+..+ .++..+.|+|.||+..
T Consensus 275 ~k~---------------C~vg~~pGvT~smqeV--~Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 275 RKA---------------CNVGNVPGVTRSMQEV--KLDKKIRLLDSPGIVP 309 (435)
T ss_pred hcc---------------ccCCCCccchhhhhhe--eccCCceeccCCceee
Confidence 442 2345779999887666 4788899999999974
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=148.33 Aligned_cols=159 Identities=24% Similarity=0.291 Sum_probs=110.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...+.+.+..++..+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+... ...
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~-----piilv~NK~D~~~~---~~~ 127 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS----------NK-----PVILVVNKVDGPDE---EAD 127 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CC-----cEEEEEECccCccc---hhh
Confidence 4445666666778899999999999886555556666666532 33 89999999997532 112
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++ ...| +.+++.+||+++.|++++++.+..... ..-++.++|.+|+|||||+|+|++..
T Consensus 128 ~~~~-----~~lg---~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~-- 197 (435)
T PRK00093 128 AYEF-----YSLG---LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE-- 197 (435)
T ss_pred HHHH-----HhcC---CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC--
Confidence 2222 1223 345789999999999999988865221 12357779999999999999999542
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+...+... ....++||||+...
T Consensus 198 -------------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~ 234 (435)
T PRK00093 198 -------------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRK 234 (435)
T ss_pred -------------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCC
Confidence 2234667899998865543222 34689999998643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-15 Score=137.14 Aligned_cols=131 Identities=23% Similarity=0.351 Sum_probs=94.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~ 346 (413)
|...+..+.||..++++.| ++...+|++.+ +|++|+||||||++|.++..+++|.+..+...+ ..
T Consensus 3 i~i~~l~K~fg~~~VLkgi-~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGI-SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeCCeEEecCc-ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 3445677889999999999 88888898877 999999999999999999999999865333111 11
Q ss_pred cccc--CCCCCe-eeeEe-----ecccc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 347 LTEA--PVPGTT-LGIVR-----VEGVL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 347 ~t~s--~~pgtT-~~~i~-----~~~~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+.++ -+|..| ++++. +...- .....+++..|+. ..+.++..|||||||||+|||+| .|+....|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 1111 134322 22221 11000 0123678888997 67899999999999999999999 67888877
Q ss_pred CC
Q 015085 411 VS 412 (413)
Q Consensus 411 ~~ 412 (413)
+|
T Consensus 162 EP 163 (240)
T COG1126 162 EP 163 (240)
T ss_pred CC
Confidence 76
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-15 Score=137.80 Aligned_cols=129 Identities=23% Similarity=0.322 Sum_probs=94.1
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------cccccc--CCC
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------SHLTEA--PVP 353 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------~~~t~s--~~p 353 (413)
-...+.|+...+++.+ ++....|+++. +|++|||||||+|+|+|+..|.+|.+......+ ..+.+. -+|
T Consensus 7 ~~v~~~f~~~~vl~~i-~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlP 85 (248)
T COG1116 7 EGVSKSFGGVEVLEDI-NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLP 85 (248)
T ss_pred EeeEEEeCceEEeccc-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccc
Confidence 3455667778888888 88888888766 999999999999999999999999755433222 111111 134
Q ss_pred C-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |.++++.+.....+ ...+++..|+. ..+++++.||||++|||++||++ .|+.+.+|+||
T Consensus 86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3 33455544322211 23567788886 56799999999999999999999 78999999997
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=142.61 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=112.7
Q ss_pred HHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 185 TVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 185 ~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
.+.+++++.++.+|+||.||||+++..-+.+.+.+++.... ..+..++++||+||++. +....
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d-------------~~K~~~LLvNKaDLl~~----~qr~a 225 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-------------PSKANVLLVNKADLLPP----EQRVA 225 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc-------------cccceEEEEehhhcCCH----HHHHH
Confidence 36789999999999999999999988777888888886531 11268999999999975 66778
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeec----------------Ccchhcc------------ch----------hhh----
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNW----------------GLKSLID------------DV----------VDL---- 302 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~----------------Gi~~Ll~------------~I----------~~l---- 302 (413)
|...+..+. ..+++.||.... +...... .. .+.
T Consensus 226 Wa~YF~~~n-----i~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s 300 (562)
T KOG1424|consen 226 WAEYFRQNN-----IPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLIS 300 (562)
T ss_pred HHHHHHhcC-----ceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhh
Confidence 877654432 357777776500 0000000 00 000
Q ss_pred -c-----c--cC--CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 303 -A-----G--KR--GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 303 -~-----~--~~--g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
. . .+ -.|.+||.+|||||++||+|.|. +.+.+|..||-|..+..+ .+.....|
T Consensus 301 ~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~---------------KkVsVS~TPGkTKHFQTi--~ls~~v~L 363 (562)
T KOG1424|consen 301 AMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGR---------------KKVSVSSTPGKTKHFQTI--FLSPSVCL 363 (562)
T ss_pred ccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcC---------------ceeeeecCCCCcceeEEE--EcCCCcee
Confidence 0 0 00 13445999999999999999953 456789999999999877 47778999
Q ss_pred cccccccCCC
Q 015085 373 FDTPGLLHPN 382 (413)
Q Consensus 373 iDtpGl~~~~ 382 (413)
.|.||+..+.
T Consensus 364 CDCPGLVfPS 373 (562)
T KOG1424|consen 364 CDCPGLVFPS 373 (562)
T ss_pred cCCCCccccC
Confidence 9999997543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-15 Score=140.59 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=92.8
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc---------cccccccc---
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK---------NIVSHLTE--- 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~---------~~v~~~t~--- 349 (413)
+-...-.|+-..+++.| ++...+|++.. +||||+|||||+++|+|+++|.+|.+.... ..+.++++
T Consensus 7 v~nl~v~y~~~~vl~~i-~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~ 85 (254)
T COG1121 7 VENLTVSYGNRPVLEDI-SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSS 85 (254)
T ss_pred EeeeEEEECCEeeeecc-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccc
Confidence 33444456543688998 88888888766 999999999999999999999999865321 23444433
Q ss_pred --cCCCCCeeeeEeeccccc--------------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 --APVPGTTLGIVRVEGVLP--------------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 --s~~pgtT~~~i~~~~~l~--------------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
..+|-|..+.+... ... .....++..|+. ..++...+|||||+|||.+||+| .|+.+.||
T Consensus 86 ~d~~fP~tV~d~V~~g-~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 86 VDRSFPITVKDVVLLG-RYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred cCCCCCcCHHHHHHcc-CcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 23455655554431 111 112456677876 46788999999999999999999 67889999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 165 EP~ 167 (254)
T COG1121 165 EPF 167 (254)
T ss_pred CCc
Confidence 986
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=156.01 Aligned_cols=158 Identities=25% Similarity=0.284 Sum_probs=108.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...+.+.+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~----------~-----~pvIlV~NK~D~~~~~---~~ 401 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA----------G-----KPVVLAVNKIDDQASE---YD 401 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEECcccccch---hh
Confidence 4444556667778899999999999876555566666666432 3 3999999999986431 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC------------CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR------------GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~------------g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
..++ . ..| +..++.+||++|.|+.+|++.|.+..... .++.++|.+|||||||+|.|++.
T Consensus 402 ~~~~----~-~lg---~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 402 AAEF----W-KLG---LGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred HHHH----H-HcC---CCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 1111 1 123 34578899999999999988876554321 25777999999999999999953
Q ss_pred CcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 330 VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 330 ~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
. ...++..+|||++.+....... ....++||||+..
T Consensus 474 ~---------------~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 474 E---------------RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred c---------------ccccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 2 1234567899988755332222 2456899999864
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-14 Score=143.15 Aligned_cols=150 Identities=27% Similarity=0.319 Sum_probs=96.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+...|.|++|+++. ++.. ...+.++|... +..+. +.++|+||+||++. .+...+|+... ..
T Consensus 110 aANvD~vliV~s~~-p~~~-~~~ldr~L~~a-------~~~~i-----~piIVLNK~DL~~~---~~~~~~~~~~~--~~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLN-HDFN-LRRIERYLALA-------WESGA-----EPVIVLTKADLCED---AEEKIAEVEAL--AP 170 (356)
T ss_pred EEeCCEEEEEEecC-CCCC-hhHHHHHHHHH-------HHcCC-----CEEEEEEChhcCCC---HHHHHHHHHHh--CC
Confidence 45689999999984 2222 23556666543 12243 67899999999854 12222333322 12
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCC
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~p 353 (413)
| ..|+.+|++++.|++.|...+. .+..+.++|.+|+|||||+|+|+|...+..|.+........+
T Consensus 171 g----~~Vi~vSa~~g~gl~~L~~~L~----~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~------- 235 (356)
T PRK01889 171 G----VPVLAVSALDGEGLDVLAAWLS----GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH------- 235 (356)
T ss_pred C----CcEEEEECCCCccHHHHHHHhh----cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc-------
Confidence 2 4789999999999999888772 222456699999999999999999998888865433222212
Q ss_pred CCeeeeEeecccccccccccccccccC
Q 015085 354 GTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 354 gtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
||..... +.+..+..++||||+..
T Consensus 236 -tt~~~~l--~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 236 -TTTHREL--HPLPSGGLLIDTPGMRE 259 (356)
T ss_pred -hhhhccE--EEecCCCeecCCCchhh
Confidence 2221111 12344568999999964
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-15 Score=144.04 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=94.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
+.+.+..+.||....++.+ ++....|++++ +||||||||||||+|+|+..+++|++......+..+..
T Consensus 4 i~l~~v~K~yg~~~~l~~i-~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 4 LELKNVRKSFGSFEVLKDV-NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEeeeEEEcCCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 5566777888865466777 77778888776 99999999999999999999999997765555544332
Q ss_pred c--CCCCC-eeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGT-TLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgt-T~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ -+|.. ..+++.+...+.+ ..++..+-++. ..++.+..|||||+|||+++|+| +|+.|.+|+||
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 1 24553 3455554433221 01233344443 24588999999999999999999 78999999996
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-14 Score=136.49 Aligned_cols=155 Identities=29% Similarity=0.415 Sum_probs=112.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.+-..+..+|+||+|+||+|+-+.....+.++|.+. + ..+.+|+|+||+||+|.. ....|++.
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke-----------~--phKHli~vLNKvDLVPtw----vt~~Wv~~ 268 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE-----------K--PHKHLIYVLNKVDLVPTW----VTAKWVRH 268 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhc-----------C--CcceeEEEeeccccccHH----HHHHHHHH
Confidence 344567889999999999999999889999988753 1 123799999999999873 35678877
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---cCC--cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---KRG--NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---~~g--~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~ 343 (413)
+.+++- .--+-.|..+.+|-..|++.+.++.. .+. .+.+||.+|+|||++||+|-...
T Consensus 269 lSkeyP----TiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk------------- 331 (572)
T KOG2423|consen 269 LSKEYP----TIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK------------- 331 (572)
T ss_pred HhhhCc----ceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc-------------
Confidence 665542 12344677788888887777765532 223 35559999999999999997422
Q ss_pred cccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 344 v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
.-.+.++||-|.-...+ .+...++|||.||+..+
T Consensus 332 --VCkvAPIpGETKVWQYI--tLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 332 --VCKVAPIPGETKVWQYI--TLMKRIFLIDCPGVVYP 365 (572)
T ss_pred --cccccCCCCcchHHHHH--HHHhceeEecCCCccCC
Confidence 23457889988543333 35667899999999864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-14 Score=126.41 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=84.2
Q ss_pred chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCC----------------
Q 015085 293 KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGT---------------- 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgt---------------- 355 (413)
.+.++.+ ++...+|+.. ++|++|+||||||+.|.+...|++|.+......+..+....+|-.
T Consensus 15 ~~aL~~v-s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDV-SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCc-eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 5577787 7777777754 499999999999999999999999986655444444444433322
Q ss_pred --eeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 --TLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 --T~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+.+.++...- ....++|..|+. +.+..+..||||||||+.|||++ +|.....|+|
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 222222221111 013578899997 56889999999999999999999 5666666665
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.7e-14 Score=131.55 Aligned_cols=127 Identities=21% Similarity=0.321 Sum_probs=88.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cccccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVSHLTEA 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~~~t~s 350 (413)
-...-+|+...+++.+ ++...+|++.. +|+||||||||+++|+|.++|.+|.+.-+.. .+..+.++
T Consensus 6 ~~ls~~y~~~~il~~l-s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~ 84 (258)
T COG1120 6 ENLSFGYGGKPILDDL-SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQS 84 (258)
T ss_pred EEEEEEECCeeEEecc-eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccC
Confidence 3445678888899999 88888888877 9999999999999999999999998653322 23333333
Q ss_pred CC--CC-CeeeeEeeccccccc--------------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccC
Q 015085 351 PV--PG-TTLGIVRVEGVLPAQ--------------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIK 410 (413)
Q Consensus 351 ~~--pg-tT~~~i~~~~~l~~~--------------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~ 410 (413)
.. .+ |..+.+.. ++.+.. .+.++..|+. ..++..+.|||||+||+++||+|.+ +...||
T Consensus 85 ~~~~~~~tV~d~V~~-GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 85 PSAPFGLTVYELVLL-GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCCCCCcEEeehHhh-cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 21 12 33344322 222211 1224455665 4578899999999999999999955 567777
Q ss_pred CC
Q 015085 411 VS 412 (413)
Q Consensus 411 ~~ 412 (413)
+|
T Consensus 164 EP 165 (258)
T COG1120 164 EP 165 (258)
T ss_pred CC
Confidence 76
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-14 Score=139.80 Aligned_cols=132 Identities=21% Similarity=0.308 Sum_probs=96.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc----------c
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT----------E 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t----------~ 349 (413)
+.+.+..+.||....++.+ ++...+|+++. +||+||||||||++|+|+..|++|.+......+..+. +
T Consensus 6 l~i~~v~k~yg~~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEEEeeeeecCCeeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 5566778899977888888 88888888775 9999999999999999999999998664443333322 2
Q ss_pred c--CCCCCee-eeEeecccccc----------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTTL-GIVRVEGVLPA----------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT~-~~i~~~~~l~~----------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ -+|..|. +++.+...+.. ..++++..|+. ..++..+.|||||+|||++||+| .|+...||+||
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 2 2455443 44444322111 12456666765 45789999999999999999999 57789999886
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-13 Score=125.84 Aligned_cols=119 Identities=24% Similarity=0.307 Sum_probs=77.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc----------------ccC--CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT----------------EAP--VP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t----------------~s~--~p 353 (413)
..++..+ ++..++|+++. +|++|||||||+|+|.++..|++|.+......+..+. ++. +|
T Consensus 18 ~~~L~~v-~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDV-NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 3566777 78888888766 9999999999999999999999887443322222221 111 12
Q ss_pred CCe-eeeEeeccccc---------cccccccccccc-CCC-CCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 354 GTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPN-QITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 354 gtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~-~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..| .+.+..+..+. ....+.+-.|+. ..+ +.+..|||||+|||++||+| .|+....|+|
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 222 22222111010 012345555775 333 78999999999999999999 5677777766
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-13 Score=124.83 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=93.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~ 349 (413)
+-...+.|+...+++.+ ++....|++.+ +|++||||||++++|.++..|++|.+......+ .++-+
T Consensus 4 ~~nvsk~y~~~~av~~v-~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDV-NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeee-eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 34455677788888888 88888888877 999999999999999999999999865433222 22211
Q ss_pred --cCCCCCee-eeEee---cccccc------ccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 350 --APVPGTTL-GIVRV---EGVLPA------QAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 350 --s~~pgtT~-~~i~~---~~~l~~------~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.-+|..|. +.+.. ...|+. ..++++..|+. ..++++++|||||||||-++|+| .|..+.+|+|
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 23455553 22211 011111 23678888885 35899999999999999999999 5788888888
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
|
T Consensus 163 F 163 (309)
T COG1125 163 F 163 (309)
T ss_pred c
Confidence 6
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-12 Score=120.01 Aligned_cols=126 Identities=23% Similarity=0.318 Sum_probs=87.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--------------
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA-------------- 350 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s-------------- 350 (413)
...+||.-+++..+ ++....|++.. +|+||+|||||+++|+|+.++.+|.+......+..+...
T Consensus 9 l~~~YG~~~~L~gv-sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR 87 (237)
T COG0410 9 LSAGYGKIQALRGV-SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87 (237)
T ss_pred EeecccceeEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc
Confidence 34578888888888 88888888776 999999999999999999999999876554444333221
Q ss_pred -CCCCCee-eeEeeccc-ccc-------ccccccc-cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 -PVPGTTL-GIVRVEGV-LPA-------QAKLFDT-PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 -~~pgtT~-~~i~~~~~-l~~-------~~~liDt-pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
-+|..|. +++..-.. ... .-++|+. |-+. +.++....|||||||.++|+|+| .|+...||+|
T Consensus 88 ~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 88 RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1222222 22221100 110 0113332 4444 56899999999999999999999 7899999987
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-12 Score=120.01 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=80.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccc----cCCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTE----APVPGT 355 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~----s~~pgt 355 (413)
.+++.+ ++...+|+++. +|++|+|||||.++|+|+..++.|.+...... +..+.+ |-.|--
T Consensus 21 ~~l~~V-S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNV-SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcce-eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 378888 78788888777 99999999999999999999999986643321 111111 112222
Q ss_pred eee-eEeeccccc-------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLG-IVRVEGVLP-------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~-~i~~~~~l~-------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|.+ .+.-+.... ....++|..|+. ..++.+++|||||+||++|+||| .|+...+|+|
T Consensus 100 tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 211 111110000 024577888886 45789999999999999999999 5677777776
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-12 Score=123.48 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=82.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---cccccc----------c--
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---IVSHLT----------E-- 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---~v~~~t----------~-- 349 (413)
.++.++....++.| ++..+.|+... +|+||+|||||+++|+|+..|+.|.+..... ....+. +
T Consensus 8 ~~~~~~~~~a~~di-~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 8 VKKRFGAFGALDDI-SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhhcccccccccc-eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 34455555555556 66666777666 9999999999999999999999998653332 111111 0
Q ss_pred cCCCCCe-eeeEeeccccc-----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APVPGTT-LGIVRVEGVLP-----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~pgtT-~~~i~~~~~l~-----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-++..| .+.|.+-.... ...+++++..+. -.++++..|||||+|||++||++ .|+...||+||
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 0122222 23333211111 012345555554 24588999999999999999999 68999999997
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-12 Score=125.22 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=84.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc---------------cccC---CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL---------------TEAP---VP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~---------------t~s~---~p 353 (413)
..+++.+ ++...+|+++. +|.+|+|||||++++.++..|++|.+.-+...+..+ .+.. ..
T Consensus 19 ~~al~~v-sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 19 VTALDDV-SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeeeccc-eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 4567777 78888999988 999999999999999999999999865333222221 1111 12
Q ss_pred CCeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccccCC
Q 015085 354 GTTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYRIKV 411 (413)
Q Consensus 354 gtT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~l~~ 411 (413)
.|..+.+.++..+.+ ..++++..|+. +.++++..|||||+|||.|||||. |+....|+
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 244455555433322 24688888997 678999999999999999999994 55555444
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-12 Score=120.26 Aligned_cols=132 Identities=22% Similarity=0.299 Sum_probs=93.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL------------ 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~------------ 347 (413)
|.+-+..+.+|-..+++.+ ++..++|++.. +|++|+|||||+++|.|+++|++|++......+..+
T Consensus 9 I~vr~v~~~fG~~~Ild~v-~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 9 IEVRGVTKSFGDRVILDGV-DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EEEeeeeeecCCEEEecCc-eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 4556677889999999999 89999999887 999999999999999999999999865332222211
Q ss_pred ---cccC--C-CCCeeeeEeeccc----cccc------cccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 348 ---TEAP--V-PGTTLGIVRVEGV----LPAQ------AKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 ---t~s~--~-pgtT~~~i~~~~~----l~~~------~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+.. + .-|+.+++.++.. +++. ..-+...|+. . .+.++++||||.++|+++|||| .|+..
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 1111 1 1144455555321 1110 1224556665 2 5789999999999999999999 67777
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
-+|+|+
T Consensus 168 ~~DEPt 173 (263)
T COG1127 168 FLDEPT 173 (263)
T ss_pred EecCCC
Confidence 777774
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-12 Score=119.64 Aligned_cols=129 Identities=24% Similarity=0.302 Sum_probs=82.2
Q ss_pred EeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC--Ceee
Q 015085 283 FVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG--TTLG 358 (413)
Q Consensus 283 ~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg--tT~~ 358 (413)
+-+..+.| |....++.| ++....|++++ +|++|+||||||++|.|+..+..|++......+..+....... ...+
T Consensus 6 ~~nl~k~yp~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iG 84 (258)
T COG3638 6 VKNLSKTYPGGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIG 84 (258)
T ss_pred EeeeeeecCCCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhce
Confidence 34455666 777888888 77778888666 9999999999999999999999997553322211111000000 0001
Q ss_pred eEeecc---------------c------------cc-c-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc-
Q 015085 359 IVRVEG---------------V------------LP-A-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK- 403 (413)
Q Consensus 359 ~i~~~~---------------~------------l~-~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~- 403 (413)
++.+.+ . +. + -...++..|+. ...+.++.|||||||||.|||+|.
T Consensus 85 mIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q 164 (258)
T COG3638 85 MIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQ 164 (258)
T ss_pred eEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhc
Confidence 111000 0 00 0 12345666776 467889999999999999999995
Q ss_pred -CCccccCCC
Q 015085 404 -PRTYRIKVS 412 (413)
Q Consensus 404 -~~~~~l~~~ 412 (413)
|+....|+|
T Consensus 165 ~pkiILADEP 174 (258)
T COG3638 165 QPKIILADEP 174 (258)
T ss_pred CCCEEecCCc
Confidence 455655655
|
|
| >KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=118.95 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=101.1
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+++.+.+...|+|+-|-||+-+..+....+.+++.. ++-|+|+||+||.+...... +.++++
T Consensus 38 r~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~-----------------k~riiVlNK~DLad~~~~k~-~iq~~~ 99 (335)
T KOG2485|consen 38 RAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPP-----------------KPRIIVLNKMDLADPKEQKK-IIQYLE 99 (335)
T ss_pred HHHHhhcccccEEEEeeccccCCccccHHHHHhcCC-----------------CceEEEEecccccCchhhhH-HHHHHH
Confidence 567778888999999999999888888777777652 27899999999997432222 223322
Q ss_pred HHHHHcCCCccceEEEeEEEeecC--cchhccchh-------hhcc---cCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 268 QRAREDGISKITKLHFVSAVKNWG--LKSLIDDVV-------DLAG---KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~G--i~~Ll~~I~-------~l~~---~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.. . ...++..+..+... +..++..+. .+.. ....++++|.+|+|||||||++.... .
T Consensus 100 ~~----~---~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~----L 168 (335)
T KOG2485|consen 100 WQ----N---LESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVH----L 168 (335)
T ss_pred hh----c---ccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHH----h
Confidence 21 1 12233333332222 333332221 1111 23468889999999999999887433 1
Q ss_pred CCcccccccccccccCCCCCeeeeEe-ecccccccccccccccccCC
Q 015085 336 GDGEEKNIVSHLTEAPVPGTTLGIVR-VEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 336 ~~~~~~~~v~~~t~s~~pgtT~~~i~-~~~~l~~~~~liDtpGl~~~ 381 (413)
. ..+..++.+.||.|+..-. +...-.....++||||+..+
T Consensus 169 r------k~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 169 R------KKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred h------hccceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 0 1145677888999986533 22234456899999999864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-12 Score=126.43 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=88.1
Q ss_pred EeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc
Q 015085 283 FVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA 350 (413)
Q Consensus 283 ~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s 350 (413)
+-...+.| +...+++.+ ++....|+++. +|+||+|||||+++|+|+.++++|.+......+ ..+.+.
T Consensus 6 i~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGI-DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred EEeEEEEeCCCCEEEeee-eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 33445556 555677777 77778888766 999999999999999999999999765332222 111111
Q ss_pred --CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2343 223333322111 0 012456666775 35788999999999999999999 78999999985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=123.71 Aligned_cols=132 Identities=19% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+ ..+..
T Consensus 7 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 7 VVLKNITKRFGSNTVIDNL-NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEEEeEEEEECCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3445556677766677777 77778888766 999999999999999999999999765332222 11111
Q ss_pred c--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|+ |..+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 1 2344 223443332111 0 012355556664 34688999999999999999999 78999999986
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=123.02 Aligned_cols=132 Identities=23% Similarity=0.270 Sum_probs=89.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------cccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~ 349 (413)
+.+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+......+. .+..
T Consensus 5 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDI-SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEeCCeEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3444556667666677777 77777788766 9999999999999999999999997653322221 1111
Q ss_pred --cCCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 --APVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+|..| .+.+.+..... ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1234322 23333211100 012356666665 34688999999999999999999 78999999986
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=124.04 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=89.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------cccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~ 349 (413)
+.+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+. .+..
T Consensus 15 L~l~~l~~~~~~~~~l~~v-sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 15 VELRGISKSFDGKEVISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEEEECCeEEEeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 3344556667666677777 77778888766 9999999999999999999999997653322221 1111
Q ss_pred c--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+|||+++|+| .|+.+.||+|+
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 234422 3333322111 0 012356666775 35688999999999999999999 78999999986
|
|
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-12 Score=110.60 Aligned_cols=103 Identities=24% Similarity=0.300 Sum_probs=60.1
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
++..| .+|+.+|++++.|+++|.+.+. +..++++|++|||||||||.|.+......|++++....+++.|+
T Consensus 8 y~~~g----y~v~~~S~~~~~g~~~l~~~l~-----~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt 78 (161)
T PF03193_consen 8 YEKLG----YPVFFISAKTGEGIEELKELLK-----GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT 78 (161)
T ss_dssp HHHTT----SEEEE-BTTTTTTHHHHHHHHT-----TSEEEEECSTTSSHHHHHHHHHTSS----S--------------
T ss_pred HHHcC----CcEEEEeCCCCcCHHHHHHHhc-----CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC
Confidence 44555 4799999999999999988772 23455599999999999999998877667766655455555443
Q ss_pred cCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHH
Q 015085 350 APVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393 (413)
Q Consensus 350 s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~ 393 (413)
. ... + .++.+..++||||+.... ...++..+.
T Consensus 79 ~------~~l--~--~l~~g~~iIDTPGf~~~~--l~~~~~~~l 110 (161)
T PF03193_consen 79 H------REL--F--PLPDGGYIIDTPGFRSFG--LWHIDPEEL 110 (161)
T ss_dssp S------EEE--E--EETTSEEEECSHHHHT----GCCS-HHHH
T ss_pred C------eeE--E--ecCCCcEEEECCCCCccc--cccCCHHHH
Confidence 2 122 2 356678999999997532 233555553
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-12 Score=123.73 Aligned_cols=131 Identities=20% Similarity=0.251 Sum_probs=93.2
Q ss_pred EEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-----------ccccccc
Q 015085 282 HFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-----------NIVSHLT 348 (413)
Q Consensus 282 ~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-----------~~v~~~t 348 (413)
......+.|| ...+++.+ ++..+.|++++ +|+||||||||||+|+|+..|++|.+.... ..+..+.
T Consensus 6 ~~~~l~k~~~~~~~~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred eecceEEEeCCCCEEEece-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 3456677888 58899999 88889899888 999999999999999999999999754322 1122222
Q ss_pred cc--CCCCCe-eeeEeecccccc---------cccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~~---------~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ..+..| .+.+.+...+.+ ...+++..|+.. .++....||+|++||+.++.+| .|+.+.||+|.
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 22 123333 233322111111 124677778763 3677999999999999999999 78999999984
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-12 Score=116.59 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=80.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------cccccccC----CCCCeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------VSHLTEAP----VPGTTLG 358 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------v~~~t~s~----~pgtT~~ 358 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.... ...|..+
T Consensus 13 ~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDL-SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred Cceeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 4577777 77777888776 99999999999999999999999975432211 12222221 1223333
Q ss_pred eEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 332211100 112345556665 34677899999999999999999 68899999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=121.74 Aligned_cols=133 Identities=23% Similarity=0.295 Sum_probs=90.2
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC--CCCccccccc----------cc
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR--GGDGEEKNIV----------SH 346 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~--G~~~~~~~~v----------~~ 346 (413)
.+.+-+..+.|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..|++ |.+......+ ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDL-SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEECCeEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 34555666677766677877 77777788766 99999999999999999999999 9754332221 11
Q ss_pred cccc--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+... -+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1111 234422 2333221110 0 012456666775 35788999999999999999999 689999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 164 P~ 165 (362)
T TIGR03258 164 PL 165 (362)
T ss_pred cc
Confidence 85
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-11 Score=122.15 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=86.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc-
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA- 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s- 350 (413)
+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+...
T Consensus 6 i~~l~~~~~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 6 LRNVTKAYGDVVISKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred EEEEEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 33445566655677777 77777888766 999999999999999999999999754322211 111111
Q ss_pred -CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 85 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1233 222332221100 0 012345666775 34678899999999999999999 68899999985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.1e-12 Score=124.50 Aligned_cols=129 Identities=18% Similarity=0.258 Sum_probs=87.7
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA-- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s-- 350 (413)
-+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 6 ~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~ 84 (353)
T PRK10851 6 ANIKKSFGRTQVLNDI-SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYA 84 (353)
T ss_pred EEEEEEeCCeEEEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcc
Confidence 3444556655678887 77778888777 999999999999999999999999764332221 122211
Q ss_pred CCCCCe-eeeEeecccc-------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVL-------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l-------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+.... . ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 85 l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 85 LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 234433 2333221110 0 112356666774 35688999999999999999999 78999999885
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=109.16 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=69.0
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
.++...+++.+ ++...+|+++. +|+||+|||||+++|+|.+++.+|++......+...... +......+.+
T Consensus 9 ~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~~~i~~----- 80 (178)
T cd03229 9 RYGQKTVLNDV-SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE--LPPLRRRIGM----- 80 (178)
T ss_pred EECCeEEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchh--HHHHhhcEEE-----
Confidence 34444577777 77778888776 999999999999999999999999654322221111000 0000011111
Q ss_pred ccccccccccccCC----CCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLLHP----NQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~~~----~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.+... +.....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 81 ----~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 81 ----VFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred ----EecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 1111111100 001111999999999999999 67889999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.1e-11 Score=113.51 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-- 350 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +..+...
T Consensus 7 ~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (232)
T cd03218 7 SKRYGKRKVVNGV-SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS 85 (232)
T ss_pred EEEeCCEEeeccc-eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc
Confidence 3445445677777 77777888776 99999999999999999999999975422111 1111111
Q ss_pred CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 86 IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 123322 22222110000 001344455664 24677889999999999999999 68899999885
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-11 Score=111.94 Aligned_cols=124 Identities=24% Similarity=0.305 Sum_probs=80.0
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg- 354 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+... .+++
T Consensus 9 ~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 9 TYGSVRALDDL-SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred EeCCeeeecce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 44445577777 77778888776 999999999999999999999999754322211 111111 1111
Q ss_pred CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 88 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 88 TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 222222111000 0 011345555664 24677889999999999999999 68899999884
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-11 Score=114.31 Aligned_cols=124 Identities=23% Similarity=0.288 Sum_probs=80.2
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA-- 350 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s-- 350 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+...
T Consensus 9 ~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 9 SFGGRTVLKGV-DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred EECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 44445677777 77778888776 999999999999999999999999754322111 111111
Q ss_pred CCCCCe-eeeEeeccc----ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGV----LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~----l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++.| .+.+.+... ... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 88 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 88 LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 122222 222211100 000 11244555664 23677889999999999999999 68889999885
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-11 Score=122.94 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=83.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------cccccc--c
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTE--A 350 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~--s 350 (413)
+|...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|++|.+...... +.++.. .
T Consensus 3 ~~~~~~l~~v-s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 3 TGGKKGVNDA-DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred cCCceeEEee-EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3444456666 67777888877 99999999999999999999999975432221 111111 1
Q ss_pred CCCC-CeeeeEeecccc---------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVL---------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l---------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.... .....+++..|+. ..++.+..||+||+||+.++|+| .|+.+.+|+|+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2343 333433321110 0113567777875 45788999999999999999999 68889999885
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-11 Score=113.05 Aligned_cols=126 Identities=18% Similarity=0.314 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PV 352 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~ 352 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+... ..
T Consensus 7 ~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (220)
T cd03265 7 VKKYGDFEAVRGV-SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVD 85 (220)
T ss_pred EEEECCEEeeece-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCcccc
Confidence 3344545677777 77777888776 999999999999999999999999754322111 111111 11
Q ss_pred CCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.+... .. ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.+|+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 86 DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2212 222211000 00 012345555664 23677899999999999999999 68888898885
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-11 Score=120.76 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=88.7
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc-
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE- 349 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~- 349 (413)
.+-+..+.++...+++.+ ++....|++++ +|+||+|||||+++|+|+..+++|.+......+ ..+..
T Consensus 21 ~l~~v~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 21 EIRNLTKSFDGQHAVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred EEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 334555566655567777 77777788776 999999999999999999999999755332221 12211
Q ss_pred -cCCCC-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 -APVPG-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 -s~~pg-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+|+ |..+.+.+..... ....+++..|+. ..++.+..||+||+||++++|+| .|+.+.||+|+
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~ 177 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPM 177 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12344 2233333221100 012456666775 34688899999999999999999 78999999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-12 Score=116.76 Aligned_cols=128 Identities=25% Similarity=0.327 Sum_probs=90.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE-------------- 349 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~-------------- 349 (413)
+..+.+|.-..++.+ ++...+|++.. +||||+|||||||+|+|.++|++|.+......+..+..
T Consensus 9 ~l~k~FGGl~Al~~V-sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 9 GLSKRFGGLTAVNDV-SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred cceeecCCEEEEece-eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 445677777778888 88888899887 99999999999999999999999986644333322211
Q ss_pred -cCCCCCe-eeeEeeccc--------c-------------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 -APVPGTT-LGIVRVEGV--------L-------------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 -s~~pgtT-~~~i~~~~~--------l-------------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+++.| ++.+.+... + ..-..+++..|+. ..+..+..||.|+|+++.|||+| .
T Consensus 88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQ 167 (250)
T ss_pred ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcC
Confidence 1233322 222221100 0 0012467778886 56889999999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+...||+|.
T Consensus 168 P~lLLLDEPa 177 (250)
T COG0411 168 PKLLLLDEPA 177 (250)
T ss_pred CCEEEecCcc
Confidence 8889999873
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-11 Score=119.95 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=82.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCC-C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVP-G 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~p-g 354 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|+.+|++|.+......+ ..+... -++ .
T Consensus 19 ~~L~~v-sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 19 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 578888 78888888776 999999999999999999999999754322221 111111 122 2
Q ss_pred CeeeeEeecccc---cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+||+| .|+.+.+|+|+
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 333333322111 00 12456677775 45788999999999999999999 67888888874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=106.93 Aligned_cols=100 Identities=26% Similarity=0.358 Sum_probs=66.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL 366 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l 366 (413)
..|+...+++.+ ++...+|+++. +|+||+|||||+++|+|..+|.+|.+......+...... +. ..
T Consensus 8 ~~~~~~~vl~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~-------~~-----~~ 74 (163)
T cd03216 8 KRFGGVKALDGV-SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPR-------DA-----RR 74 (163)
T ss_pred EEECCeEEEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHH-------HH-----Hh
Confidence 344444577777 77778888776 999999999999999999999988543221111100000 00 00
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 367 PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 367 ~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.....++ .||+||+||+.++|++ .|+.+.+|+|+
T Consensus 75 ~~i~~~~-------------qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 75 AGIAMVY-------------QLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred cCeEEEE-------------ecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 0001111 1999999999999999 67889998885
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-11 Score=115.30 Aligned_cols=120 Identities=21% Similarity=0.267 Sum_probs=79.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------ccccccccC-----CCCCeeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEAP-----VPGTTLGI 359 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s~-----~pgtT~~~ 359 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+..... .+..+.... ++.|..+.
T Consensus 12 ~~~l~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 12 HPVLEDV-SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred EEeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 4567777 77777888766 9999999999999999999999997643221 122222111 12233333
Q ss_pred Eeecccc--------c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 360 VRVEGVL--------P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 360 i~~~~~l--------~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 160 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2221000 0 012345555664 34677899999999999999999 68899999884
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-11 Score=112.23 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=79.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+... .++
T Consensus 17 ~~il~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGV-SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeee-EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 4577777 77778888776 99999999999999999999999975432211 1111111 122
Q ss_pred C-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ |..+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPT 168 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCc
Confidence 2 2222222110000 012345555664 24677889999999999999999 67899999885
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-11 Score=109.86 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=87.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
|.+-.+.-.++.+.++..| ++..+.|+-|+ +|+||+|||||++++++.+.|.+|.+.-........++
T Consensus 32 i~l~~v~v~r~gk~iL~~i-sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 32 IELKNVSVRRNGKKILGDL-SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred EEecceEEEECCEeecccc-ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 3444455567788999999 77777777666 99999999999999999999987753311111111110
Q ss_pred -c-----CC-CCCe-eeeEeec-----c----cc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 350 -A-----PV-PGTT-LGIVRVE-----G----VL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 350 -s-----~~-pgtT-~~~i~~~-----~----~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
| .+ +..+ ++.+.-- + .. ....++++..|+. ..++....||.||+|+++|||+| .|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 0 00 1111 1111100 0 00 1113566667776 56899999999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 191 ~LLiLDEP~ 199 (257)
T COG1119 191 ELLILDEPA 199 (257)
T ss_pred CEEEecCcc
Confidence 999999985
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-11 Score=116.90 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=88.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-----------cccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-----------IVSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-----------~v~~~t 348 (413)
+.+.+..+.||...+++.+ ++...+|++++ +|+||+|||||+++|+|++.|++|.+..... .+..+.
T Consensus 8 i~i~~l~k~~~~~~~l~~v-sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGL-SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEEEeEEEEECCeEEEecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 4455566677766788888 88888888877 9999999999999999999999997543211 122222
Q ss_pred cc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .++. |..+.+.+...+.+ ...+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 11 1222 22233322111100 11345556664 34677899999999999999999 78889998874
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-11 Score=109.92 Aligned_cols=125 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg 354 (413)
..++...+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... -++.
T Consensus 8 ~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (213)
T cd03301 8 KRFGNVTALDDL-NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPH 86 (213)
T ss_pred EEECCeeeeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccC
Confidence 344445677777 77778888776 999999999999999999999999754322111 111111 0111
Q ss_pred -CeeeeEeecccc---c-c-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P-A-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~-~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . . ...+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 87 MTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 222222111000 0 0 01345555664 34677889999999999999999 68899999884
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-11 Score=113.63 Aligned_cols=120 Identities=22% Similarity=0.249 Sum_probs=78.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC---CC-CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP---VP-GT 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~---~p-gt 355 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+...... +..+.... ++ .+
T Consensus 14 ~~il~~v-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDI-SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 4577777 77777888776 99999999999999999999999975432211 11222211 12 22
Q ss_pred eeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2232221100 00 011245555664 24677899999999999999999 68899999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-11 Score=110.50 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=77.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------ccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------------HLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------------~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+. .+... .+++
T Consensus 15 ~~il~~i-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4577777 77778888776 9999999999999999999999997543221111 11111 1121
Q ss_pred -CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt 165 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPT 165 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 11222211000 00 012344555664 23577889999999999999999 68999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-12 Score=116.34 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=89.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE----------- 349 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~----------- 349 (413)
...+..+.|+...+++.+ ++....|+++. +||||+||||.|.++.|+..+++|.+......+..++.
T Consensus 6 ~a~~l~K~y~kr~Vv~~V-sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYL 84 (243)
T COG1137 6 VAENLAKSYKKRKVVNDV-SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYL 84 (243)
T ss_pred EehhhhHhhCCeeeeeee-eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccc
Confidence 334556777888888888 78888899877 99999999999999999999999986544433333221
Q ss_pred ----cCCCCCee-eeEeecc--cc---c----c--ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 ----APVPGTTL-GIVRVEG--VL---P----A--QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 ----s~~pgtT~-~~i~~~~--~l---~----~--~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
|-+.+.|. +.+..-. .. . . .-.+++-.++. -.++....|||||++|+.|||+| .|+-..||
T Consensus 85 pQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD 164 (243)
T COG1137 85 PQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD 164 (243)
T ss_pred cccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec
Confidence 11122221 1111000 00 0 0 01456666665 35688899999999999999999 67888889
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+||
T Consensus 165 EPF 167 (243)
T COG1137 165 EPF 167 (243)
T ss_pred CCc
Confidence 887
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-11 Score=106.31 Aligned_cols=106 Identities=20% Similarity=0.349 Sum_probs=66.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~ 371 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+.... ... .....+
T Consensus 13 ~~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~-~~~i~~------------ 77 (173)
T cd03230 13 KTALDDI-SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEV-KRRIGY------------ 77 (173)
T ss_pred eeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-Hhh-hccEEE------------
Confidence 3567777 77777787766 9999999999999999999999886543222111100 000 001111
Q ss_pred ccccccccCCCCCCCC--CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLLHPNQITTR--LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~~~~~~~~~--LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+...+.+.......+. ||+||+||+.+++++ .|+.+.+|+|+
T Consensus 78 ~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 78 LPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred EecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1111111111011111 999999999999999 78999999884
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-11 Score=114.33 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=82.3
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CC
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PV 352 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~ 352 (413)
....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..+.+|.+...... +..+... .+
T Consensus 8 l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~ 86 (239)
T cd03296 8 VSKRFGDFVALDDV-SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALF 86 (239)
T ss_pred EEEEECCEEeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCccc
Confidence 34445545678887 77778888776 99999999999999999999999975432211 1111111 11
Q ss_pred CC-CeeeeEeecccc-------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGVL-------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~l-------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 87 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~ 164 (239)
T cd03296 87 RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 164 (239)
T ss_pred CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 222322211000 0 011345555664 24677889999999999999999 67899999885
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-11 Score=106.65 Aligned_cols=108 Identities=26% Similarity=0.282 Sum_probs=65.9
Q ss_pred hcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------ccccccccCC------CC
Q 015085 302 LAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------IVSHLTEAPV------PG 354 (413)
Q Consensus 302 l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------~v~~~t~s~~------pg 354 (413)
+....|+++. +|++|+|||||+|.|+|...|.+|.+..... ...|+|+... ||
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 3445566555 9999999999999999999999997543322 2222222110 11
Q ss_pred CeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~~~~ 413 (413)
..++..... ......--.|+. ..++.+..|||||+|||++||.+.. =...||+||
T Consensus 100 LkL~a~~r~----~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPF 157 (231)
T COG3840 100 LKLNAEQRE----KVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPF 157 (231)
T ss_pred cccCHHHHH----HHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCch
Confidence 111110000 000122233554 3468999999999999999999943 345667765
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-11 Score=120.59 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=86.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~ 349 (413)
+.+...+|+...+++.+ ++...+|++++ +|+||+||||||++|+|+++|.+|.+...... +..+..
T Consensus 6 ~~nls~~y~~~~vL~~v-s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGV-DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred EeeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 34445567767788888 88888899877 99999999999999999999999975432211 111111
Q ss_pred c---CCCCCeeeeEeecc-----cc---cc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 A---PVPGTTLGIVRVEG-----VL---PA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 s---~~pgtT~~~i~~~~-----~l---~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
. .+..+..+.+.+.. .+ .. ..++++..|+. ..++....||+||+||+.++|+| .|+.+.||
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1 01112222221100 00 00 12345566665 34678899999999999999999 67888888
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|.
T Consensus 165 EPt 167 (402)
T PRK09536 165 EPT 167 (402)
T ss_pred CCc
Confidence 874
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-11 Score=111.55 Aligned_cols=124 Identities=21% Similarity=0.287 Sum_probs=79.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg 354 (413)
.++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|.+|.+......+ ..+... ..+.
T Consensus 10 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~ 88 (236)
T TIGR03864 10 AYGARRALDDV-SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLD 88 (236)
T ss_pred EECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCccc
Confidence 34444577777 77777888776 999999999999999999999999754322111 111111 1111
Q ss_pred -CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+....... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 89 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 89 LSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2222221110000 012345555664 24677889999999999999999 67899999885
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-11 Score=111.34 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=78.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG- 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg- 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .++.
T Consensus 17 ~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 17 PALDNL-NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 477777 77778888776 999999999999999999999999754322111 111111 1122
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 166 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT 166 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22222221100 00 012345556664 34677899999999999999999 68899999885
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-11 Score=109.75 Aligned_cols=110 Identities=26% Similarity=0.346 Sum_probs=73.2
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------------ccccccccCCC
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------------IVSHLTEAPVP 353 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------------~v~~~t~s~~p 353 (413)
...+.|++.+ ++....|++.. +|+||+|||||++.|+|.+.|++|.+.-... .+..-+.-.+|
T Consensus 11 ~~Gr~ll~~v-sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 11 LAGRRLLDGV-SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred eecceeccCc-ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 3456788888 77777788777 9999999999999999999999987432111 11122222344
Q ss_pred CCeeeeEeecccccc---------------cccccccccccCCCCCCCCCCHHHHHHHHHhhhhc
Q 015085 354 GTTLGIVRVEGVLPA---------------QAKLFDTPGLLHPNQITTRLTREEQKLVNINKELK 403 (413)
Q Consensus 354 gtT~~~i~~~~~l~~---------------~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~ 403 (413)
-|..+.+.+- ..+. .+...|.-|+.. +.+..|||||+|||.++|.|.
T Consensus 90 Ftv~eVV~mG-r~p~~~g~~~~e~~~i~~~ala~~d~~~la~--R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 90 FTVQEVVQMG-RIPHRSGREPEEDERIAAQALAATDLSGLAG--RDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred eEHHHHHHhc-ccccccCCCchhhHHHHHHHHHHcChhhhhc--cchhhcCchHHHHHHHHHHHH
Confidence 4444443321 1111 012355566654 678889999999999999994
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-11 Score=111.11 Aligned_cols=119 Identities=21% Similarity=0.267 Sum_probs=78.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+...... +..+... -++.
T Consensus 19 ~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 19 RVLKGV-SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred EeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 477777 77778888776 99999999999999999999999975432111 1111111 1122
Q ss_pred -CeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+.. ... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 169 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPT 169 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 2222222100 000 012355556664 34677899999999999999999 68899999885
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-11 Score=115.70 Aligned_cols=132 Identities=20% Similarity=0.270 Sum_probs=86.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------cccccccc--
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEA-- 350 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s-- 350 (413)
+.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|++.+++|.+..... .+..+...
T Consensus 13 l~i~~l~~~~~~~~il~~i-sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQL-DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 3344445556656688888 77778888776 9999999999999999999999997542211 11111111
Q ss_pred CCCC-CeeeeEeeccc--c-ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGV--L-PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~--l-~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+.+... . .....+++..|+. ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1122 22333322110 0 0112345556664 34677899999999999999999 67889999884
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-11 Score=109.51 Aligned_cols=120 Identities=23% Similarity=0.281 Sum_probs=78.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------ccccccc--CCCC-CeeeeEe
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------VSHLTEA--PVPG-TTLGIVR 361 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------v~~~t~s--~~pg-tT~~~i~ 361 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+...... +..+... .++. |..+.+.
T Consensus 17 ~~il~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDI-SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEece-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 4577777 77778888776 99999999999999999999999975432211 1111111 1121 2222222
Q ss_pred eccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 362 VEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 362 ~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..... ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 110000 012345555664 24577889999999999999999 67899999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-11 Score=117.50 Aligned_cols=132 Identities=15% Similarity=0.197 Sum_probs=88.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t 348 (413)
+.+....+.||...+++.+ ++....|++++ +|+||+||||||++|+|++.|++|.+...... +..+.
T Consensus 42 i~i~nl~k~y~~~~~l~~i-s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 4445556677777788888 78888888877 99999999999999999999999975432211 11111
Q ss_pred cc--CCCCCe-eeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .++..| .+.+.+.....+ ...+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 112222 232221110100 01345556665 35678899999999999999999 68899999874
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-11 Score=106.13 Aligned_cols=114 Identities=25% Similarity=0.357 Sum_probs=77.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeec--------
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVE-------- 363 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~-------- 363 (413)
..+++.+ ++....|+.++ +|++|||||||+|.++|...|..|.+..+.+.+ .-||-.++.+-+.
T Consensus 18 ~~~le~v-sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i------~gPgaergvVFQ~~~LlPWl~ 90 (259)
T COG4525 18 RSALEDV-SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI------EGPGAERGVVFQNEALLPWLN 90 (259)
T ss_pred hhhhhcc-ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEec------cCCCccceeEeccCccchhhH
Confidence 4467777 77777787666 999999999999999999999999755333222 1133333332221
Q ss_pred --------ccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 --------GVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 --------~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+ ...++-..|+. ..++++-.||||++||+-+||+| .|+-..||+||
T Consensus 91 ~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 91 VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 11110 01334455665 35788899999999999999999 57778888876
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.3e-11 Score=108.38 Aligned_cols=113 Identities=21% Similarity=0.340 Sum_probs=75.3
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA 368 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~ 368 (413)
|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+......+...... .....+.+ ...
T Consensus 9 ~~~~~~l~~~-~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~----~~~~~i~~---~~q 80 (180)
T cd03214 9 YGGRTVLDDL-SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK----ELARKIAY---VPQ 80 (180)
T ss_pred ECCeeeEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHH----HHHHHHhH---HHH
Confidence 3334577777 77777888776 999999999999999999999999654322111110000 00000111 000
Q ss_pred ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++....||+||+||++++|++ .|+.+.+|+|+
T Consensus 81 ---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 81 ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred ---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 44555654 23567889999999999999999 78899999885
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-10 Score=111.45 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=82.0
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------cccccc--CCCC-C
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------SHLTEA--PVPG-T 355 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------~~~t~s--~~pg-t 355 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+... .++. |
T Consensus 8 ~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~t 86 (255)
T PRK11248 8 YADYGGKPALEDI-NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRN 86 (255)
T ss_pred EEEeCCeeeEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCc
Confidence 3445445677777 77778888776 999999999999999999999999764322111 111111 1122 2
Q ss_pred eeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 87 VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222221100 00 012355666664 23577889999999999999999 68889999884
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-11 Score=112.61 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=83.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------ccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTE 349 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~ 349 (413)
......++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+..
T Consensus 9 ~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 87 (255)
T PRK11300 9 SGLMMRFGGLLAVNNV-NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQ 87 (255)
T ss_pred eeEEEEECCEEEEEee-eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEecc
Confidence 3444455555678888 77778888877 999999999999999999999999754222111 10111
Q ss_pred --cCCCCCe-eeeEeecc-------------------cc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhh
Q 015085 350 --APVPGTT-LGIVRVEG-------------------VL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~-------------------~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
..+++.| .+.+.+.. .. .....+++..|+. ..++....||+||+||+.++++
T Consensus 88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 167 (255)
T PRK11300 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC 167 (255)
T ss_pred CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence 1123322 22211100 00 0011234556664 3467789999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
+ .|+.+.||+|+
T Consensus 168 l~~~p~llllDEPt 181 (255)
T PRK11300 168 MVTQPEILMLDEPA 181 (255)
T ss_pred HhcCCCEEEEcCCc
Confidence 9 68999999885
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-11 Score=111.38 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------------cccc--c
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------------HLTE--A 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------------~~t~--s 350 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.|.+|.+......+. .+.. .
T Consensus 9 ~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 87 (242)
T TIGR03411 9 SVSFDGFKALNDL-SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT 87 (242)
T ss_pred EEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc
Confidence 3445444577777 77778888876 9999999999999999999999997543221111 1111 1
Q ss_pred CCCCCe-eeeEeeccc--------c---------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 351 PVPGTT-LGIVRVEGV--------L---------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~--------l---------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
-+++.| .+.+.+... + .....+++..|+. ..++....||+||+|++++++++ .|+.+.|
T Consensus 88 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 88 VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 123322 222211000 0 0012345556665 34677889999999999999999 5788999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (242)
T TIGR03411 168 DEPV 171 (242)
T ss_pred cCCc
Confidence 8884
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.2e-11 Score=112.36 Aligned_cols=128 Identities=25% Similarity=0.290 Sum_probs=84.1
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s~ 351 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+....
T Consensus 7 ~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 7 NLSVRLGGRTLLDDV-SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred eEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 344455555678888 77778888776 999999999999999999999999754322111 1111111
Q ss_pred ---CCCCeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--------CCccccC
Q 015085 352 ---VPGTTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--------PRTYRIK 410 (413)
Q Consensus 352 ---~pgtT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--------~~~~~l~ 410 (413)
...|..+.+.+..... ....+++..|+. ..++....||+||+||+.+++++. |+.+.||
T Consensus 86 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD 165 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165 (258)
T ss_pred cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 1123333322210000 012345556664 346788999999999999999996 7899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 166 EPt 168 (258)
T PRK13548 166 EPT 168 (258)
T ss_pred CCc
Confidence 885
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-11 Score=105.52 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=67.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~ 371 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+..... ....++.....+. ...
T Consensus 14 ~~~l~~i-~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~-~~t 79 (166)
T cd03223 14 RVLLKDL-SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLP-LGT 79 (166)
T ss_pred CeeeecC-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCccc-ccc
Confidence 3577777 77777888766 9999999999999999999999986442210 0011111100000 011
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..-+. ....||+||+||+.++|++ .|+.+.+|+|+
T Consensus 80 v~~nl~~~----~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 80 LREQLIYP----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred HHHHhhcc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 11111000 3578999999999999999 78889999884
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.3e-11 Score=109.79 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=80.7
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------ccccccc--CCCCCe
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------VSHLTEA--PVPGTT 356 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------v~~~t~s--~~pgtT 356 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+++.|
T Consensus 8 ~~~~~~~~l~~v-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 8 KRFGRVTALDDI-SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred EEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCc
Confidence 344445577777 77777888766 99999999999999999999999975432211 1112111 122322
Q ss_pred -eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 -LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 -~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 87 VIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222111000 0 012345555664 23567889999999999999999 68899999885
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-11 Score=115.35 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=85.0
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s 350 (413)
+.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +..+...
T Consensus 7 ~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 85 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDL-SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQF 85 (303)
T ss_pred EEeEEEEeCCeEEEcce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEecc
Confidence 34445566656688888 78888888777 99999999999999999999999975432211 1111111
Q ss_pred --CCCCCe-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++..| .+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|.
T Consensus 86 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 86 DNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 112222 222221100 000 01245556664 34677899999999999999999 68889999884
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=117.79 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=80.9
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc--CCCCCe
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA--PVPGTT 356 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s--~~pgtT 356 (413)
|...+++.+ ++...+|++++ +|+||+|||||+++|+|++.|++|.+...... +..+... .+++.|
T Consensus 4 ~~~~~l~~v-s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 4 GDFKAVDGV-NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CCeeEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 334566777 77777888776 99999999999999999999999975432211 1111111 122222
Q ss_pred -eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 -LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 -~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+...+. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 22222111000 012356666775 34678899999999999999999 68888998884
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-11 Score=110.07 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=78.1
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC-Cee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG-TTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg-tT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++. |..
T Consensus 15 ~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDL-SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 4577777 77778888776 999999999999999999999999754322111 111111 1111 222
Q ss_pred eeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 22221100 000 12345555664 33577889999999999999999 78889999885
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-11 Score=115.00 Aligned_cols=125 Identities=23% Similarity=0.338 Sum_probs=80.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA 350 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s 350 (413)
+.+|...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+...
T Consensus 32 ~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 32 KKTGQTVGVNDV-SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hhcCCceEeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 345555567777 67777788777 999999999999999999999999754322111 111111
Q ss_pred --CCCC-CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPG-TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+.+... ... ...+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt 188 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188 (269)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1122 22222211100 000 11345555664 34677899999999999999999 68889999885
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-11 Score=123.85 Aligned_cols=130 Identities=20% Similarity=0.211 Sum_probs=85.8
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t 348 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+.
T Consensus 14 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 14 ARSISKQYSGVEVLKGI-DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred EEeEEEEeCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 33445566656678888 78888888766 999999999999999999999999764322111 1111
Q ss_pred cc--CCCCCe-eeeEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .+++.| .+.+.+..... ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred ccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 11 112212 22222110000 112345666775 34678899999999999999999 68999999885
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-11 Score=112.76 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=72.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc----------------ccccccccc--CCCCCe-eeeEeeccc--
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK----------------NIVSHLTEA--PVPGTT-LGIVRVEGV-- 365 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~----------------~~v~~~t~s--~~pgtT-~~~i~~~~~-- 365 (413)
|-..++|.+|+|||||||+|+|+.+|+.|.+.-+. +.+.++.+. -+|..| ++++.+-..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 44455999999999999999999999999754221 111121111 133333 233332110
Q ss_pred -ccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 -LPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 -l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
......++++-||.. .++++..|||||+|||+|.|+| .|+...+|+||
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPL 156 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCch
Confidence 011235678888863 4799999999999999999999 78889999886
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-11 Score=117.80 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=80.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... -++.
T Consensus 18 ~~il~~v-sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~ 96 (343)
T PRK11153 18 IHALNNV-SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCC
Confidence 4577887 78888888776 99999999999999999999999975432211 1111111 1121
Q ss_pred -CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 97 RTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 22233222100 00 012355666775 34677899999999999999999 68899999884
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.4e-11 Score=103.76 Aligned_cols=111 Identities=27% Similarity=0.351 Sum_probs=74.1
Q ss_pred hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccc----------------ccccccccC--CCC-
Q 015085 295 LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN----------------IVSHLTEAP--VPG- 354 (413)
Q Consensus 295 Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~----------------~v~~~t~s~--~pg- 354 (413)
++..+ ++...+|+ +.+||++|+|||||+-.|+|+..+++|++..... .+..+.+|. +|.
T Consensus 25 IL~~V-~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l 103 (228)
T COG4181 25 ILKGV-ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL 103 (228)
T ss_pred Eeecc-eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence 34444 45555565 5559999999999999999999999998652211 112222221 233
Q ss_pred CeeeeEeeccccccc---------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcCCc
Q 015085 355 TTLGIVRVEGVLPAQ---------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKPRT 406 (413)
Q Consensus 355 tT~~~i~~~~~l~~~---------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~~~ 406 (413)
|.++.+..+..+.+. ..++...|+. +-..++..|||||||||+++|++.+++
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 334555554444331 2456677886 557889999999999999999996554
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-11 Score=111.38 Aligned_cols=124 Identities=23% Similarity=0.317 Sum_probs=79.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+... -+
T Consensus 9 ~~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 9 RFGGLVALDDV-SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLF 87 (236)
T ss_pred EECCEEEecCc-eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccc
Confidence 34444577777 77777888776 99999999999999999999999975422111 1111111 12
Q ss_pred CCCe-eeeEeeccccc-------------------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 353 PGTT-LGIVRVEGVLP-------------------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~-------------------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 167 (236)
T cd03219 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLL 167 (236)
T ss_pred cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3322 22221110000 012345556664 34677889999999999999999 6788888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (236)
T cd03219 168 DEPA 171 (236)
T ss_pred cCCc
Confidence 8874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=107.74 Aligned_cols=119 Identities=20% Similarity=0.156 Sum_probs=70.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCcccccccccccccCCCCCeeeeEeeccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV 365 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~ 365 (413)
.++...+++.+ ++....|++++ +|+||+|||||+++|+|. ..+.+|.+......+..............++.....
T Consensus 9 ~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (200)
T cd03217 9 SVGGKEILKGV-NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP 87 (200)
T ss_pred EeCCEEeeecc-ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh
Confidence 34434577777 77777888776 999999999999999999 468888654332222111100000000111111000
Q ss_pred ccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.....+.+. -......||+||+|++.+++++ .|+.+.+|+|+
T Consensus 88 ~~~~~~~~~~-----l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 88 EIPGVKNADF-----LRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred hccCccHHHH-----HhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0000111110 0233468999999999999999 68888888874
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=105.27 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=66.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+.......+ ...+.+ ......+
T Consensus 16 ~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~---~~q~~~~ 87 (173)
T cd03246 16 PVLRNV-SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL----GDHVGY---LPQDDEL 87 (173)
T ss_pred cceeee-EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH----HhheEE---ECCCCcc
Confidence 467777 67777888776 99999999999999999999999965432221111100000 001111 0111112
Q ss_pred cccccccCCCCCCCC-CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTR-LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. + ...+. ||+||+||+++++++ .|+.+.+|+|+
T Consensus 88 ~~--~-----tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 88 FS--G-----SIAENILSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred cc--C-----cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 21 1 11111 999999999999999 68888898885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=110.27 Aligned_cols=119 Identities=21% Similarity=0.269 Sum_probs=79.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++++|.+...... +..+... -++.
T Consensus 23 ~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 23 DVLHNV-SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 477777 77778888766 99999999999999999999999975432211 1111111 1122
Q ss_pred -CeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.. ... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 173 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPT 173 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2223222110 000 012355666764 24577889999999999999999 68999999885
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.7e-11 Score=111.01 Aligned_cols=124 Identities=19% Similarity=0.309 Sum_probs=80.3
Q ss_pred ecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc--CC
Q 015085 289 NWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s--~~ 352 (413)
.|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .+
T Consensus 9 ~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (242)
T cd03295 9 RYGGGKKAVNNL-NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLF 87 (242)
T ss_pred EeCCcceEeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcccc
Confidence 4443 4577777 77778888776 999999999999999999999999754222111 111111 12
Q ss_pred CC-CeeeeEeecccc---c------cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGVL---P------AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~l---~------~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++ |..+.+.+...+ . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 88 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 88 PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 22 222222211000 0 012345555665 24677889999999999999999 67889999884
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.13 E-value=9e-11 Score=106.06 Aligned_cols=89 Identities=22% Similarity=0.258 Sum_probs=60.7
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL 366 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l 366 (413)
+.+|...++..+ +....|+++. +|+||+|||||+++|+|+.+|++|.+... |.....+
T Consensus 8 ~~~~~~~~l~~~--~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-------------g~~i~~~------ 66 (177)
T cd03222 8 KRYGVFFLLVEL--GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD-------------GITPVYK------ 66 (177)
T ss_pred EEECCEEEEccC--cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC-------------CEEEEEE------
Confidence 344444444443 3445666665 99999999999999999999998853311 1111110
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 367 PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 367 ~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .. .||+||+||+.+++++ .|+.+.+|+|+
T Consensus 67 ------~q---------~~-~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 67 ------PQ---------YI-DLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ------cc---------cC-CCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 00 00 1999999999999999 68888888874
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-10 Score=112.36 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=82.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccc
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTE 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~ 349 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+......+ ..+..
T Consensus 13 l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q 91 (269)
T PRK11831 13 VSFTRGNRCIFDNI-SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQ 91 (269)
T ss_pred eEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEec
Confidence 33455555677777 78778888766 999999999999999999999999754322111 11111
Q ss_pred c--CCCC-CeeeeEeeccc----ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGV----LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~----l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. .+++ |..+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 1233 22222221100 000 01234555664 24677899999999999999999 68899999885
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-11 Score=109.59 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=78.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC--CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP--VPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~--~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++++|.+......+ ..+.... ++.
T Consensus 15 ~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGV-TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4577777 77778888776 999999999999999999999999754322111 1111110 122
Q ss_pred -CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+... ... ...+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 22222221100 000 01345555664 23577889999999999999999 68899999885
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-11 Score=111.02 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc--C
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA--P 351 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s--~ 351 (413)
..|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.++|.+|++......+ ..+... -
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (230)
T TIGR03410 8 VYYGQSHILRGV-SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREI 86 (230)
T ss_pred EEeCCeEEecce-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcc
Confidence 344445677777 77778888777 999999999999999999999999754322111 111111 1
Q ss_pred CCCCe-eeeEeeccccc--c----ccccccccc-cc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVLP--A----QAKLFDTPG-LL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l~--~----~~~liDtpG-l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++.| .+.+.+..... . ...+++..+ +. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 87 FPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 12212 22221110000 0 022344444 22 24677889999999999999999 68899999884
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.3e-11 Score=110.18 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=78.4
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+
T Consensus 9 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (222)
T cd03224 9 GYGKSQILFGV-SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIF 87 (222)
T ss_pred ecCCeeEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccC
Confidence 44444577777 77778888777 99999999999999999999999975422211 1111111 12
Q ss_pred CCCe-eeeEeeccccc--c-----cccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGVLP--A-----QAKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~--~-----~~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+..... . ...+++.. ++. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 88 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 88 PELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred CCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 3322 22222110000 0 01233333 332 23577888999999999999999 68899999884
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-11 Score=109.45 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=78.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC-Ceee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG-TTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg-tT~~ 358 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .+++ +..+
T Consensus 19 ~il~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGV-SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 577777 77777788766 999999999999999999999999754322111 111111 1122 2222
Q ss_pred eEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.... . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 22211000 0 012355666765 34677899999999999999999 78888898884
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=109.83 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=82.1
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------ccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~t~s- 350 (413)
+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+......+. .+...
T Consensus 8 ~l~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 8 EVSYSSFGKEILKDI-SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred eEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 334445545677777 77777888776 9999999999999999999999997543221111 11111
Q ss_pred -CCCCCeeeeEeeccccc-----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTTLGIVRVEGVLP-----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT~~~i~~~~~l~-----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+..+.+.+..... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 87 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 87 HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred hhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 11222222222110000 012345555663 24577889999999999999999 68889999884
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-11 Score=109.40 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=78.9
Q ss_pred eecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~pg 354 (413)
..++...+++.+ ++....|.+.++|+||+|||||+++|+|++++.+|.+......+ ..+... .+++
T Consensus 8 ~~~~~~~~l~~v-s~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (211)
T cd03264 8 KRYGKKRALDGV-SLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPN 86 (211)
T ss_pred EEECCEEEEcce-eEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCccccc
Confidence 344444577777 66666674445999999999999999999999999754322111 111111 1223
Q ss_pred Ce-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 87 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 87 FTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22 222221100 00 012345555664 23577899999999999999999 68888898884
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-11 Score=113.32 Aligned_cols=125 Identities=24% Similarity=0.275 Sum_probs=80.7
Q ss_pred eecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc
Q 015085 288 KNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA 350 (413)
Q Consensus 288 ~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s 350 (413)
..|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 9 ~~~~~~~~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~ 87 (243)
T TIGR02315 9 KVYPNGKQALKNI-NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87 (243)
T ss_pred eecCCCcceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCC
Confidence 3444 45577887 77778888776 99999999999999999999999975432211 1111111
Q ss_pred --CCCC-CeeeeEeeccc-----------c-c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 --PVPG-TTLGIVRVEGV-----------L-P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~-----------l-~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
-++. +..+.+.+... . . ....+++..|+. ..++....||+||+||+++++++ .|+.+
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 88 YNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred CcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222 22222221000 0 0 012344555664 34677889999999999999999 68899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 168 llDEPt 173 (243)
T TIGR02315 168 LADEPI 173 (243)
T ss_pred EEeCCc
Confidence 999885
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-11 Score=110.23 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=80.0
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cccccc--CCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SHLTEA--PVP 353 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~~t~s--~~p 353 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+ ..+... ..+
T Consensus 8 ~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 86 (198)
T TIGR01189 8 CSRGERMLFEGL-SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKP 86 (198)
T ss_pred EEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCccccc
Confidence 345555677777 77778888776 999999999999999999999999754322111 111110 011
Q ss_pred C-CeeeeEeeccccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+..... ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 1122221100000 012344555664 24577899999999999999999 68888888874
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.4e-11 Score=108.76 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=79.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pg- 354 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++.
T Consensus 9 ~~~~~~~l~~~-~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (208)
T cd03268 9 TYGKKRVLDDI-SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNL 87 (208)
T ss_pred EECCeEeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccC
Confidence 34445677777 77777888776 999999999999999999999999754322211 111111 1111
Q ss_pred CeeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+++++++ .|+.+.+|+|+
T Consensus 88 tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 88 TARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 222222111000 0 112344555664 23577889999999999999999 57889999885
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-11 Score=110.27 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=77.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG- 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg- 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .+++
T Consensus 19 ~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDV-SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 577777 77778888777 999999999999999999999999754322111 111111 1222
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 22222221100 00 012344555664 24577889999999999999999 67889999885
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-10 Score=107.10 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=81.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------ccccc--CCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTEA--PVP 353 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~s--~~p 353 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+. .+... ..+
T Consensus 9 ~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204)
T PRK13538 9 CERDERILFSGL-SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKT 87 (204)
T ss_pred EEECCEEEEecc-eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCc
Confidence 344545678887 78788888777 9999999999999999999999997543322111 01000 011
Q ss_pred C-CeeeeEeeccccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 88 ~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 88 ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 2222222110000 012345556664 34677899999999999999999 68888888874
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-11 Score=114.73 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=72.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC---CCCCeeeeEeeccc-ccc----ccccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP---VPGTTLGIVRVEGV-LPA----QAKLFDT 375 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~---~pgtT~~~i~~~~~-l~~----~~~liDt 375 (413)
..|++++ +|+||+|||||+++|+|.+.|.+|.+......+..+.... ..+|..+.+..... ... ..++++.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~ 102 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKP 102 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHH
Confidence 4567665 9999999999999999999999997654332333332221 12333333221000 000 1235555
Q ss_pred cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 376 PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 376 pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 103 l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 103 LQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred cCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6664 34577889999999999999999 68899999885
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-11 Score=110.36 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=76.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccccC----CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEAP----VPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s~----~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|..++++|.+......+ ..+...+ ++.
T Consensus 6 ~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 6 EVLKGL-NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred ceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 456666 67777788777 999999999999999999999999754322111 1111111 112
Q ss_pred CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 22222221100 00 011244445664 34677899999999999999999 67889999885
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-11 Score=112.93 Aligned_cols=125 Identities=25% Similarity=0.325 Sum_probs=80.6
Q ss_pred eecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc
Q 015085 288 KNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA 350 (413)
Q Consensus 288 ~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s 350 (413)
..|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 8 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~ 86 (241)
T cd03256 8 KTYPNGKKALKDV-SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQ 86 (241)
T ss_pred EecCCccEEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEccc
Confidence 34443 4577777 77778888777 99999999999999999999999975432211 1111111
Q ss_pred --CCCC-CeeeeEeeccc------------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 --PVPG-TTLGIVRVEGV------------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~------------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.++. |..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 87 FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222 22222211000 00 011345556664 34677889999999999999999 68899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 167 llDEPt 172 (241)
T cd03256 167 LADEPV 172 (241)
T ss_pred EEeCcc
Confidence 999884
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.9e-11 Score=109.91 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=81.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------ccccc--CC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------HLTEA--PV 352 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------~~t~s--~~ 352 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+.+|.+......+. .+... .+
T Consensus 7 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (207)
T PRK13539 7 DLACVRGGRVLFSGL-SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMK 85 (207)
T ss_pred eEEEEECCeEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCC
Confidence 344455555677777 77778888776 9999999999999999999999997543221111 11000 01
Q ss_pred C-CCeeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 P-GTTLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 p-gtT~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ .+..+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 155 (207)
T PRK13539 86 PALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPT 155 (207)
T ss_pred CCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 1222222110000 0 012345555664 23567789999999999999999 67888888874
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-11 Score=113.54 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=77.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
..++.+ ++...+|++.. ||.+|+|||||-++|+|+..|++|.+......+..+. .........++
T Consensus 27 ~avd~V-sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------------~~~~~~~v~el 92 (268)
T COG4608 27 KAVDGV-SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------------KEERRERVLEL 92 (268)
T ss_pred EEecce-eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------------hhHHHHHHHHH
Confidence 345555 67777888766 9999999999999999999999997664443332221 00011224567
Q ss_pred ccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 373 FDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 373 iDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
++..|+. ..+++.++|||||+||+.|||+| +|+.+..|+|
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 8888875 35799999999999999999999 6777777665
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-11 Score=108.59 Aligned_cols=124 Identities=24% Similarity=0.286 Sum_probs=80.1
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc--
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE-- 349 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~-- 349 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+..
T Consensus 7 ~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 85 (206)
T TIGR03608 7 KFGDKIILDDL-NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF 85 (206)
T ss_pred EECCEEEEece-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence 34434577777 77777788766 999999999999999999999999754332221 11111
Q ss_pred cCCCC-CeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APVPG-TTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~pg-tT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++. |..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 86 ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11222 22222221000 00 012345555664 34677889999999999999999 78899999884
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=105.86 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=80.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------cccc--cCC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTE--APV 352 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~--s~~ 352 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|..++++|.+......+. .+.. ...
T Consensus 8 ~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 8 DFDYHDQPLLQQI-SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred EEEeCCeeEEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 3445545678888 77778888777 9999999999999999999999997543322111 1111 111
Q ss_pred CCCe-eeeEeeccccc----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEGVLP----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~~l~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+..... ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 87 ~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 87 PYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222 23222110000 112244444553 23566788999999999999999 68888888874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-10 Score=108.38 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=84.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s- 350 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 12 ~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 12 NVGYLAGDAKILNNI-SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90 (225)
T ss_pred ccEEeeCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence 344455555678887 78888888777 999999999999999999999999754322111 111111
Q ss_pred -CCCCCeeeeEeeccc---cc----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTTLGIVRVEGV---LP----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT~~~i~~~~~---l~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-++.+..+.+.+... .. ....+++..|+. ..++....||+||+|++.++++| .|+.+.+|+|+
T Consensus 91 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 91 TLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred ccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 112222222221000 00 012456666774 24677899999999999999999 78889999885
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-10 Score=104.35 Aligned_cols=105 Identities=23% Similarity=0.313 Sum_probs=66.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+.......+ ...+.+ ......+
T Consensus 16 ~~l~~i-~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~---~~~~~~~ 87 (171)
T cd03228 16 PVLKDV-SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL----RKNIAY---VPQDPFL 87 (171)
T ss_pred ccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH----HhhEEE---EcCCchh
Confidence 577777 77777888777 99999999999999999999998865432211111000000 000111 0111112
Q ss_pred cccccccCCCCCCCC-CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTR-LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. ...+. ||+||+||+.+++++ .|+.+.||+|+
T Consensus 88 ~~~-------t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 88 FSG-------TIRENILSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred ccc-------hHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 221 11111 999999999999999 78899999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.1e-11 Score=106.08 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=85.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------------ 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------------ 349 (413)
.....+.||..+++..+ ++....|+++- +|.+|+||||++++|.-+..|..|.+.-....+...+.
T Consensus 9 v~dlHK~~G~~eVLKGv-SL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q 87 (256)
T COG4598 9 VEDLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQ 87 (256)
T ss_pred hhHHHhhcccchhhcce-eeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHH
Confidence 34456788888999888 78778888766 99999999999999999999999875422111111000
Q ss_pred ---------------cCCCCCe-eee-Ee----ecccc-----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 350 ---------------APVPGTT-LGI-VR----VEGVL-----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 350 ---------------s~~pgtT-~~~-i~----~~~~l-----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
.-|+..| ++. +. +.+.- .....+++..|+. +.+.++..||||+|||++|||+|
T Consensus 88 ~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaL 167 (256)
T COG4598 88 LQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167 (256)
T ss_pred HHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHH
Confidence 0111111 111 00 00000 0012467778887 56789999999999999999998
Q ss_pred --cCCccccCCC
Q 015085 403 --KPRTYRIKVS 412 (413)
Q Consensus 403 --~~~~~~l~~~ 412 (413)
.|++...|+|
T Consensus 168 ameP~vmLFDEP 179 (256)
T COG4598 168 AMEPEVMLFDEP 179 (256)
T ss_pred hcCCceEeecCC
Confidence 5777777766
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-11 Score=105.91 Aligned_cols=108 Identities=24% Similarity=0.345 Sum_probs=69.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+... ... ....+.+ ......+
T Consensus 16 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~----~~~~i~~---~~q~~~~ 86 (178)
T cd03247 16 QVLKNL-SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKA----LSSLISV---LNQRPYL 86 (178)
T ss_pred cceEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHH----HHhhEEE---EccCCee
Confidence 477777 77778888776 999999999999999999999999654322211110 000 0000111 0111122
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. .-.+.+...||+||+|++.++|++ .|+.+.+|+|+
T Consensus 87 ~~~---tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 87 FDT---TLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ecc---cHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 211 001122678999999999999999 78889888874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-10 Score=110.33 Aligned_cols=127 Identities=16% Similarity=0.226 Sum_probs=81.2
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA- 350 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s- 350 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+...
T Consensus 9 l~~~~~~~~~l~~~-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 9 LAKAYKGRRVVEDV-SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred cEEEeCCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 33445545677777 77778888776 99999999999999999999999975422211 1111111
Q ss_pred -CCCCCe-eeeEeeccccc----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTT-LGIVRVEGVLP----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT-~~~i~~~~~l~----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++.| .+.+.+..... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 88 SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 112222 22222110000 011234444554 23577889999999999999999 68889999884
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-11 Score=114.46 Aligned_cols=128 Identities=16% Similarity=0.136 Sum_probs=81.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTE 349 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~ 349 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+..
T Consensus 6 ~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 84 (271)
T PRK13638 6 DLWFRYQDEPVLKGL-NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQ 84 (271)
T ss_pred EEEEEcCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEee
Confidence 334455555688888 78878888776 999999999999999999999999754332221 11111
Q ss_pred cC---CCCCe-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 AP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~---~pgtT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ...+| .+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt 164 (271)
T PRK13638 85 DPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPT 164 (271)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 10 01111 111111000 000 01244445654 24577899999999999999999 78899999884
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-10 Score=111.23 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=86.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~ 347 (413)
+.+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+
T Consensus 8 l~i~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 8 LRGEQLTLGYGKYTVAENL-TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEEEECCEEEeeec-ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4445555666656688888 78888888776 999999999999999999999999754322111 111
Q ss_pred ccc--CCCCCe-eeeEeecc--c------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTT-LGIVRVEG--V------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~--~------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .+++.| .+.+.... . .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 111 112222 22221100 0 00 012344555664 34678899999999999999999 689999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 167 lDEPt 171 (265)
T PRK10253 167 LDEPT 171 (265)
T ss_pred EeCcc
Confidence 99884
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-10 Score=118.54 Aligned_cols=117 Identities=18% Similarity=0.284 Sum_probs=78.5
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC-C
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG-T 355 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg-t 355 (413)
++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+...... +.++... -++. |
T Consensus 44 L~~i-sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 44 VKDA-SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEeE-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 5555 66667788776 99999999999999999999999975432211 1111111 1233 2
Q ss_pred eeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+.... . ....+++..|+. ..++.+..||+||+||+.++|+| .|+.+.||+|+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 23333221100 0 012356667775 35788899999999999999999 68899999985
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-10 Score=107.68 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=76.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~~l~~-- 368 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+.... .+..+... .+++|..+.+.+......
T Consensus 19 ~il~~~-s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~~~t~~enl~~~~~~~~~~ 96 (204)
T cd03250 19 FTLKDI-NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNGTIRENILFGKPFDEER 96 (204)
T ss_pred ceeeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhccCcHHHHhccCCCcCHHH
Confidence 577787 78788888777 999999999999999999999999765332 22222221 124444444433211110
Q ss_pred cccc---------cccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKL---------FDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~l---------iDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.... ++.. |+. ..+.....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~ 155 (204)
T cd03250 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPL 155 (204)
T ss_pred HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0011 1111 211 12345688999999999999999 68888888874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-10 Score=100.60 Aligned_cols=87 Identities=25% Similarity=0.318 Sum_probs=63.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
.++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+..... ..+.+
T Consensus 9 ~~~~~~~l~~~-~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~~i~~----- 67 (144)
T cd03221 9 TYGGKLLLKDI-SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------VKIGY----- 67 (144)
T ss_pred EECCceEEEee-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------EEEEE-----
Confidence 34434567776 67777888776 9999999999999999999988884321110 00111
Q ss_pred ccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. .||+||+||+.+++++ .|+.+.+|+|+
T Consensus 68 ----~~-------------~lS~G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 68 ----FE-------------QLSGGEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred ----Ec-------------cCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 1999999999999999 67888888875
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-10 Score=105.55 Aligned_cols=112 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecc---cccccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG---VLPAQA 370 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~---~l~~~~ 370 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+........-.....++.... .+....
T Consensus 15 ~l~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDV-SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 66666 67777787766 99999999999999999999999965433222211100000000011111100 001111
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 371 KLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 371 ~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.|...+. ..||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 t~~e~l~~~------~~LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 94 SVAENIALS------SLLSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred cHHHHHHHH------hhcCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 222211111 12999999999999999 68899999885
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-11 Score=115.08 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=80.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------ccccccC----CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEAP----VPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s~----~pg 354 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+...+ ++.
T Consensus 21 ~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 21 KALDNV-NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred ceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 577887 77778888766 999999999999999999999999754322111 1111211 123
Q ss_pred CeeeeEeeccc---ccc------ccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LPA------QAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~~------~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt 172 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT 172 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 33333322100 000 12456666774 24677899999999999999999 67888888874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=107.10 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=79.2
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc--C
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA--P 351 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s--~ 351 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .
T Consensus 9 ~~~~~~~l~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (213)
T cd03262 9 SFGDFHVLKGI-DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNL 87 (213)
T ss_pred EECCeEeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEeccccc
Confidence 34445577777 77777888776 999999999999999999999999754322211 111111 1
Q ss_pred CCC-CeeeeEeecc----cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPG-TTLGIVRVEG----VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pg-tT~~~i~~~~----~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++. +..+.+.... .... ...+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 88 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 88 FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 121 1122221100 0000 12244555664 24677899999999999999999 68899999885
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=110.28 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=82.8
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc-
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA- 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s- 350 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+...
T Consensus 7 ~l~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 7 NLTVGYGTKRILNDL-SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH 85 (255)
T ss_pred eEEEEECCEEEEeee-eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccC
Confidence 334455555678888 77778888766 99999999999999999999999975422111 1111111
Q ss_pred -CCCCCe-eeeEeec-------ccc-c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 -PVPGTT-LGIVRVE-------GVL-P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 -~~pgtT-~~~i~~~-------~~l-~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..++.| .+.+.+. +.. . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|
T Consensus 86 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 165 (255)
T PRK11231 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEP 165 (255)
T ss_pred CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 112222 1222110 000 0 012345555664 34678899999999999999999 6899999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 166 ~ 166 (255)
T PRK11231 166 T 166 (255)
T ss_pred c
Confidence 5
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=109.58 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=81.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t 348 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|..++.+|.+......+ ..+.
T Consensus 8 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 8 FDKVSAHYGKIQALHEV-SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred EEeEEEeeCCceeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 34445556555678888 77778888776 999999999999999999999999754222111 1111
Q ss_pred c--cCCCCCe-eeeEeeccc-cc-c-----cccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 E--APVPGTT-LGIVRVEGV-LP-A-----QAKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~--s~~pgtT-~~~i~~~~~-l~-~-----~~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ..+++.| .+.+..... .. . ...+++.. ++. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt 165 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence 1 1122222 222211000 00 0 01122322 232 23467789999999999999999 78999999885
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-11 Score=107.90 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=77.8
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc--------ccccc--C-CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS--------HLTEA--P-VPGT 355 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~--------~~t~s--~-~pgt 355 (413)
..|+...+++ + ++....|++++ +|+||+|||||+++|+|...+.+|.+......+. .+... . ...|
T Consensus 9 ~~~~~~~l~~-v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~t 86 (195)
T PRK13541 9 FNIEQKNLFD-L-SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMT 86 (195)
T ss_pred EEECCcEEEE-E-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCC
Confidence 3444444554 5 77777888776 9999999999999999999999997553322211 11100 0 1122
Q ss_pred eeeeEeeccccc----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLP----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 v~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~ 151 (195)
T PRK13541 87 VFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVE 151 (195)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 223222110000 012233444554 24567889999999999999999 57889998874
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-11 Score=114.62 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=82.6
Q ss_pred EEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC
Q 015085 286 AVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP 351 (413)
Q Consensus 286 a~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~ 351 (413)
....|+ ...+++.+ ++...+|+++. +|+||+|||||+++|+|+++|.+|.+...... +..+...+
T Consensus 10 l~~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 88 (274)
T PRK13647 10 LHFRYKDGTKALKGL-SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP 88 (274)
T ss_pred EEEEeCCCCeeeeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence 334443 34578888 77778888777 99999999999999999999999975432211 11111111
Q ss_pred ----CCCCeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 ----VPGTTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ----~pgtT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...|..+.+.+... .. ....+++..|+. ..++.+..||+|++||+.++++| .|+.+.||+|.
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 89 DDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred hhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 11233333322100 00 012345555664 34678899999999999999999 68889998874
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-11 Score=111.32 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=80.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v--------------~~~ 347 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|...|. +|.+......+ ..+
T Consensus 9 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 87 (247)
T TIGR00972 9 LFYGEKEALKNI-NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMV 87 (247)
T ss_pred EEECCeeeecce-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEE
Confidence 344444577777 77778888776 9999999999999999999987 88654322111 111
Q ss_pred ccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.|..+.+.+.....+ ...+++..|+. ..++....||+||+||+.++++| .|+.+.
T Consensus 88 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 88 FQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred ecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 112222333221100000 11244555663 23577899999999999999999 688999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 168 lDEPt 172 (247)
T TIGR00972 168 LDEPT 172 (247)
T ss_pred EeCCc
Confidence 99885
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=118.20 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=87.6
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccc-ccccccccCCCC---C
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEAPVPG---T 355 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s~~pg---t 355 (413)
+...+....+|...|++.+ ++....|+ +.+||.||+||||||++|+|...++.|.+..... .+.++.+..... |
T Consensus 4 i~~~~ls~~~g~~~l~~~~-~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 4 ITLENLSLAYGDRPLLENV-SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred EEEeeeEEeeCCceeecCC-cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCcc
Confidence 4556677888999999999 67666665 5559999999999999999999999997654322 233333322211 2
Q ss_pred eeeeEeeccc---------------c------------------------cccccccccccccCCCCCCCCCCHHHHHHH
Q 015085 356 TLGIVRVEGV---------------L------------------------PAQAKLFDTPGLLHPNQITTRLTREEQKLV 396 (413)
Q Consensus 356 T~~~i~~~~~---------------l------------------------~~~~~liDtpGl~~~~~~~~~LS~ge~q~v 396 (413)
+.+.+..... + .....++.--|+...++....||||++.|+
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv 162 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH
Confidence 2221110000 0 000122333455444788999999999999
Q ss_pred HHhhhh--cCCccccCCC
Q 015085 397 NINKEL--KPRTYRIKVS 412 (413)
Q Consensus 397 ~i~r~l--~~~~~~l~~~ 412 (413)
++|++| .|....||+|
T Consensus 163 ~LA~aL~~~pDlLLLDEP 180 (530)
T COG0488 163 ALARALLEEPDLLLLDEP 180 (530)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 999999 7889999987
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-10 Score=107.33 Aligned_cols=119 Identities=26% Similarity=0.375 Sum_probs=76.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+... .+++
T Consensus 24 ~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGV-ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEecc-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 377777 77778888777 99999999999999999999999975422211 1111111 1122
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+.... . ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222222110000 0 011234455654 23577889999999999999999 68899999885
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-10 Score=112.93 Aligned_cols=129 Identities=17% Similarity=0.260 Sum_probs=86.3
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccccc-
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLTEA- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t~s- 350 (413)
....+.||...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +.++...
T Consensus 6 ~~l~~~~~~~~~l~~i-s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 6 SSLTKLYGTQNALDEV-SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEEEECCEEEEEEe-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCC
Confidence 3444556656688888 78888888877 99999999999999999999999975432211 1222211
Q ss_pred -CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+++.| .+.+.+...+ . ....+++..|+. ..++....||+|++||+.++++| .|+.+.||+|.
T Consensus 85 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 123322 2332211101 1 012345556765 34688899999999999999999 78888888874
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-10 Score=111.09 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=82.6
Q ss_pred EeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------cccccccC
Q 015085 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------VSHLTEAP 351 (413)
Q Consensus 283 ~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------v~~~t~s~ 351 (413)
+.+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+....
T Consensus 9 ~~~l~~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~ 87 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDA-SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSE 87 (272)
T ss_pred EEeEEEEecCCcEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecccc
Confidence 334444553 34577777 77777888776 99999999999999999999999975432211 22221111
Q ss_pred -----CCCCeeeeEeecc-------ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 352 -----VPGTTLGIVRVEG-------VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 352 -----~pgtT~~~i~~~~-------~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+.+..+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.+|
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0111112221100 000 011345556664 34677899999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 168 EPt 170 (272)
T PRK15056 168 EPF 170 (272)
T ss_pred CCC
Confidence 885
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=114.17 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE 349 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~ 349 (413)
.+.||...+ .+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+..
T Consensus 6 ~~~~~~~~~--~i-sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 6 SKRLGDFSL--DA-DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEECCEEE--EE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEec
Confidence 344554333 45 67777788766 999999999999999999999999754322111 11111
Q ss_pred --cCCCCCe-eeeEeecccc---c----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 --APVPGTT-LGIVRVEGVL---P----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 --s~~pgtT-~~~i~~~~~l---~----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.-+++.| .+.+.+.... . ....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1123322 2222211000 0 012355566765 34678899999999999999999 68899999885
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-10 Score=106.17 Aligned_cols=119 Identities=22% Similarity=0.249 Sum_probs=77.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC---C-C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP---V-P 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~---~-p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+...... +..+.... + +
T Consensus 19 ~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDV-SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 577777 77778888777 99999999999999999999999975432211 11111111 1 1
Q ss_pred C-CeeeeEeeccc-----cc----cc--cccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGV-----LP----AQ--AKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~-----l~----~~--~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. |..+.+.+... .. .. ..+++..|+. ..++....||+||+||+.++|++ .|+.+.||+|+
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 173 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 1 22222211000 00 00 1344556663 24677889999999999999999 67889999885
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-10 Score=118.05 Aligned_cols=128 Identities=23% Similarity=0.365 Sum_probs=89.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------------ 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------------ 349 (413)
+-+..+.||.-..++.+ ++...+|++.. +|.||+|||||+|+|+|.+.|++|++..+...+...+.
T Consensus 11 ~~~i~K~FggV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 11 LRGISKSFGGVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred eecceEEcCCceeeccc-eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 55667889988888888 88889999888 99999999999999999999999986644333322111
Q ss_pred ---cCCCCCee-eeEeecccccc--------------cccccccccc-cCCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 350 ---APVPGTTL-GIVRVEGVLPA--------------QAKLFDTPGL-LHPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 350 ---s~~pgtT~-~~i~~~~~l~~--------------~~~liDtpGl-~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+-.|..|. +++. .+.... -..+++..|+ ..++.....||.+|+|.|.|||++ ..+...
T Consensus 90 QEl~L~p~LsVaeNif-Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 90 QELSLVPNLSVAENIF-LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred echhccCCccHHHHhh-cccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11122221 1111 111110 1234555555 347788999999999999999999 567788
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
+|+|
T Consensus 169 lDEP 172 (500)
T COG1129 169 LDEP 172 (500)
T ss_pred EcCC
Confidence 8887
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.5e-11 Score=110.61 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC-----cCCCCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV-----DAGRGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~-----~~~~G~~~~~~~~v--------------~~~ 347 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+ ..+
T Consensus 8 ~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 86 (227)
T cd03260 8 VYYGDKHALKDI-SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86 (227)
T ss_pred EEcCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEE
Confidence 344545677777 77777888776 9999999999999999999 88889754322111 111
Q ss_pred ccc--CCCCCeeeeEeecccc----c------ccccccccccccC-CCCC--CCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 348 TEA--PVPGTTLGIVRVEGVL----P------AQAKLFDTPGLLH-PNQI--TTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l----~------~~~~liDtpGl~~-~~~~--~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
... .+..|..+.+.+.... . ....+++..|+.. .++. ...||+||+||+++++++ .|+.+.+|
T Consensus 87 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 166 (227)
T cd03260 87 FQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166 (227)
T ss_pred ecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111 0112222322211000 0 0123455666652 2334 589999999999999999 57888888
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 167 EPt 169 (227)
T cd03260 167 EPT 169 (227)
T ss_pred CCC
Confidence 874
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=113.42 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=79.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s----~~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+...... +..+... .+
T Consensus 21 ~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 21 RALFDV-NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred ceeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 477777 77778888776 99999999999999999999999975432211 1112211 11
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 173 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPT 173 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2233333221100 000 01345566774 24677899999999999999999 67889999885
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-10 Score=120.15 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=84.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s 350 (413)
...+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+......+ ..+...
T Consensus 9 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK10762 9 GIDKAFPGVKALSGA-ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87 (501)
T ss_pred eeEEEeCCeEEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcc
Confidence 334455555678888 77778888776 999999999999999999999999764322111 111111
Q ss_pred --CCCC-CeeeeEeeccc-------cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 351 --PVPG-TTLGIVRVEGV-------LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~~-------l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.++. |..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1122 22232222100 00 012345666775 34678899999999999999999 788999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 168 Pt 169 (501)
T PRK10762 168 PT 169 (501)
T ss_pred Cc
Confidence 85
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-10 Score=104.59 Aligned_cols=119 Identities=20% Similarity=0.183 Sum_probs=73.2
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccccccccccCCCCCeeeeEeeccccc
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP 367 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~ 367 (413)
...+++.+ ++....|++++ +|+||+|||||+++|+|.++ +.+|.+......+...... . .....++.....+.
T Consensus 19 ~~~il~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~-~-~~~i~~~~q~~~~~ 95 (202)
T cd03233 19 KIPILKDF-SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK-Y-PGEIIYVSEEDVHF 95 (202)
T ss_pred CceeeeeE-EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh-h-cceEEEEecccccC
Confidence 34577777 77778888777 99999999999999999998 7888654322211111000 0 00111111110011
Q ss_pred cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....+.|.-.+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt 146 (202)
T cd03233 96 PTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146 (202)
T ss_pred CCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 111222221111 14567789999999999999999 68889999884
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-10 Score=108.37 Aligned_cols=126 Identities=25% Similarity=0.312 Sum_probs=81.5
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------------cc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------------VS 345 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------------v~ 345 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+++|.+...... +.
T Consensus 10 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (250)
T PRK11264 10 VKKFHGQTVLHGI-DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88 (250)
T ss_pred EEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEE
Confidence 3445545678887 77778888776 99999999999999999999999975422111 11
Q ss_pred ccccc--CCCC-CeeeeEeecc----ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .+++ |..+.+.+.. ... ....+++..|+. ..++....||+||+||+.+++++ .|+.+.|
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1222 2223222100 000 011345555665 24677899999999999999999 7888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 169 DEPt 172 (250)
T PRK11264 169 DEPT 172 (250)
T ss_pred eCCC
Confidence 9874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-10 Score=104.73 Aligned_cols=113 Identities=27% Similarity=0.274 Sum_probs=69.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccccCCCCCeeeeEeeccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~ 369 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+.. .... ....++.....+...
T Consensus 22 ~~~l~~~-~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~-~~i~~~~q~~~~~~~ 96 (194)
T cd03213 22 KQLLKNV-SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFR-KIIGYVPQDDILHPT 96 (194)
T ss_pred ccceecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhh-heEEEccCcccCCCC
Confidence 4578888 77778888776 9999999999999999999 9999965433222111 0000 001111110001011
Q ss_pred ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 370 AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 370 ~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.|...+.. ....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 97 ~t~~~~i~~~~---~~~~LS~G~~qrv~laral~~~p~illlDEP~ 139 (194)
T cd03213 97 LTVRETLMFAA---KLRGLSGGERKRVSIALELVSNPSLLFLDEPT 139 (194)
T ss_pred CcHHHHHHHHH---HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 11222111110 0127999999999999999 68889888875
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-10 Score=109.19 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=83.5
Q ss_pred EeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccc
Q 015085 283 FVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHL 347 (413)
Q Consensus 283 ~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~ 347 (413)
+.+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+
T Consensus 10 ~~nl~~~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v 88 (271)
T PRK13632 10 VENVSFSYPNSENNALKNV-SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGII 88 (271)
T ss_pred EEeEEEEcCCCCccceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEE
Confidence 334444553 34577887 77777888776 99999999999999999999999975422211 1111
Q ss_pred ccc---CCCC-CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TEA---PVPG-TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~s---~~pg-tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
... .+++ |..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+
T Consensus 89 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 168 (271)
T PRK13632 89 FQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168 (271)
T ss_pred EeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111 1222 22232221100 000 12345555665 34678899999999999999999 578899998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 169 P~ 170 (271)
T PRK13632 169 ST 170 (271)
T ss_pred Cc
Confidence 85
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.8e-11 Score=112.32 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=79.1
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc--CCCCCe-eeeE
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA--PVPGTT-LGIV 360 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s--~~pgtT-~~~i 360 (413)
++..+.|++++ +|-+|+|||||+++|.++..|++|++.-....+ ..+.++ -+|..| ++.+
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv 127 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENV 127 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhh
Confidence 45567789988 999999999999999999999999865332222 111111 234332 3333
Q ss_pred eeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+...+. ...+.+++.|+. +.++++++||||.||||-+||+| .+....++++|
T Consensus 128 ~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 128 AFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 3321111 124678899997 67899999999999999999999 45666666654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-10 Score=104.82 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------ccccc--CCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-----------HLTEA--PVP- 353 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-----------~~t~s--~~p- 353 (413)
.++...+++.+ ++...+|+++. +|+||+|||||+++|+|..++.+|.+......+. .+... ..+
T Consensus 9 ~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (201)
T cd03231 9 ERDGRALFSGL-SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87 (201)
T ss_pred EeCCceeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCC
Confidence 34445677777 77777788766 9999999999999999999999997543221111 11000 001
Q ss_pred CCeeeeEeeccccc---cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGVLP---AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~l~---~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|.
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 88 LSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred cCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 12222221110000 012334455554 24577889999999999999999 68888888874
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.8e-11 Score=111.78 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=81.1
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC-C-CC---Ceee
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP-V-PG---TTLG 358 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~-~-pg---tT~~ 358 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+.... ..+..+.... . +. +..+
T Consensus 10 l~~~~~~~~vl~~v-s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~ 88 (251)
T PRK09544 10 VSVSFGQRRVLSDV-SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNR 88 (251)
T ss_pred eEEEECCceEEEeE-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHH
Confidence 33445545577777 77777888666 999999999999999999999999754321 1122222211 1 11 1111
Q ss_pred eEeecccc--ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVL--PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l--~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.... .....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 89 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 148 (251)
T PRK09544 89 FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT 148 (251)
T ss_pred HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11110000 0112345556664 23577889999999999999999 68999999885
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-10 Score=107.00 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=77.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------cccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s--~~pg 354 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.+++++|.+......+ ..+... .+++
T Consensus 14 ~~~l~~~-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 4577777 77777888766 999999999999999999999999754322111 111111 1222
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 164 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT 164 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 222222111000 0 011344555664 23567889999999999999999 78899999885
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-10 Score=101.65 Aligned_cols=119 Identities=20% Similarity=0.211 Sum_probs=81.1
Q ss_pred chhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--------------ccCCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--------------EAPVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--------------~s~~pgtT~ 357 (413)
..+++.| ++...+|+. .+.||+|+|||||+++++-+..|++|.+..++..++.+. ..-+++|.-
T Consensus 16 a~il~~i-sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 16 AKILNNI-SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred Ceeecce-eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 3455555 566666665 449999999999999999999999998765554443322 233567777
Q ss_pred eeEeeccccccc-------cccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 358 GIVRVEGVLPAQ-------AKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 358 ~~i~~~~~l~~~-------~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+.++..+... ..++.-.++. ...+.+..|||||+|++++.|.| .|+...|+++
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 777665443221 1122223332 12456788999999999999999 5788888775
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-10 Score=110.07 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=81.3
Q ss_pred EEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc
Q 015085 286 AVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA 350 (413)
Q Consensus 286 a~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s 350 (413)
....|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++++|.+......+ ..+...
T Consensus 7 l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (274)
T PRK13644 7 VSYSYPDGTPALENI-NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN 85 (274)
T ss_pred EEEEcCCCCceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEC
Confidence 334442 33477777 78888888777 999999999999999999999999754322211 111111
Q ss_pred C---CCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 P---VPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~---~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ +.+ +..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 86 PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred hhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 111 112222111000 0 011345555664 34678899999999999999999 68889999874
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-10 Score=113.71 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=79.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s----~~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+... .+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 21 KGLDNI-SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 478888 77778888776 999999999999999999999999755332221 111111 11
Q ss_pred CCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+..+.+.+... .. ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt 173 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1222232221100 00 012346666774 34688899999999999999999 68888998884
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-11 Score=111.30 Aligned_cols=124 Identities=21% Similarity=0.183 Sum_probs=81.1
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--ccCCCC-CeeeeEeecc
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--EAPVPG-TTLGIVRVEG 364 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--~s~~pg-tT~~~i~~~~ 364 (413)
+||...+++.+ ++....|++++ +|+||+|||||+++|+|..++++|.+......+.... ....+. |..+.+.+..
T Consensus 31 ~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~ 109 (224)
T cd03220 31 EVGEFWALKDV-SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNG 109 (224)
T ss_pred hcCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHH
Confidence 56666677777 77777888776 9999999999999999999999997653322211110 111122 2222222110
Q ss_pred c---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 V---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 ~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 00 012344555664 23577899999999999999999 68889999885
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-10 Score=106.06 Aligned_cols=125 Identities=19% Similarity=0.288 Sum_probs=79.9
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------cccccc--CCCC-C
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------SHLTEA--PVPG-T 355 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------~~~t~s--~~pg-t 355 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+... .++. +
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t 86 (223)
T TIGR03740 8 KRFGKQTAVNNI-SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLT 86 (223)
T ss_pred EEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCC
Confidence 344445577777 77777888776 999999999999999999999999754322111 111100 1121 2
Q ss_pred eeeeEeecccc---c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVL---P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l---~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+...... . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 87 ARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 22222110000 0 112345555664 24567889999999999999999 57899999885
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-11 Score=114.50 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=83.5
Q ss_pred EEEeEEEeecCcc-----hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~-----~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------- 343 (413)
+.+.+....|+.. .+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 4444445555432 378887 78888888777 99999999999999999999999975432211
Q ss_pred ------cccccccC----CCCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 344 ------VSHLTEAP----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 344 ------v~~~t~s~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
+..+.... ++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++|
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 11111111 11222222211100 000 01234444552 24577899999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 166 ~~~p~lLlLDEPt 178 (289)
T PRK13645 166 AMDGNTLVLDEPT 178 (289)
T ss_pred HhCCCEEEEeCCc
Confidence 78899999885
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-10 Score=104.24 Aligned_cols=130 Identities=15% Similarity=0.157 Sum_probs=81.5
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------cccccc--
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------SHLTEA-- 350 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------~~~t~s-- 350 (413)
+......++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+......+ ..+...
T Consensus 14 ~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~ 92 (214)
T PRK13543 14 AHALAFSRNEEPVFGPL-DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPG 92 (214)
T ss_pred EeeEEEecCCceeeecc-eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcc
Confidence 34444556555677777 77778888776 999999999999999999999999754332111 111110
Q ss_pred CCCC-CeeeeEeecccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++ +..+.+.+.....+ ...+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|+
T Consensus 93 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 93 LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11222111000000 01233444553 23677889999999999999999 68888888874
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-10 Score=111.98 Aligned_cols=130 Identities=18% Similarity=0.169 Sum_probs=84.8
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHL 347 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~ 347 (413)
+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|..+|.+|.+......+ .++
T Consensus 8 ~~~l~~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 86 (279)
T PRK13635 8 VEHISFRYPDAATYALKDV-SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMV 86 (279)
T ss_pred EEEEEEEeCCCCccceeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEE
Confidence 3444455542 3478887 78888888877 999999999999999999999999754332211 111
Q ss_pred cccC---CC-CCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TEAP---VP-GTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~s~---~p-gtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... ++ .|..+.+.+... ... ...+++..|+. ..++.+..||+|++|++.++++| .|+.+.||+
T Consensus 87 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 166 (279)
T PRK13635 87 FQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166 (279)
T ss_pred EeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1111 11 122232222100 000 12345555665 34677899999999999999999 788899988
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 167 Pt 168 (279)
T PRK13635 167 AT 168 (279)
T ss_pred Cc
Confidence 74
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=109.18 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~ 349 (413)
+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+..
T Consensus 14 i~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 14 LRNVSFRVPGRTLLHPL-SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred EeeEEEEECCEEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 33444556555678888 78778888776 99999999999999999999999975432211 111111
Q ss_pred c--CCCCCee-eeEeeccc--------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 350 A--PVPGTTL-GIVRVEGV--------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 350 s--~~pgtT~-~~i~~~~~--------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
. .+++.|. +.+.+... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 1233222 22211000 00 011234444554 24677889999999999999999 78899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 173 EPt 175 (265)
T PRK10575 173 EPT 175 (265)
T ss_pred CCc
Confidence 885
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-10 Score=112.74 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=79.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------------cc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------------HL 347 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------------~~ 347 (413)
+..+.||...+ .+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+. .+
T Consensus 5 ~l~k~~~~~~~--~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TV-NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 33455554322 44 66667787766 9999999999999999999999997543221111 11
Q ss_pred ccc--CCCCCe-eeeEeecccc---ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL---PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l---~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... -+|..| .+.+.+.... .....+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 111 122212 2222211000 0012345566765 34678899999999999999999 68999999885
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.5e-10 Score=107.02 Aligned_cols=126 Identities=25% Similarity=0.329 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc-
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s- 350 (413)
...++...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+.+|.+......+ ..+...
T Consensus 8 ~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 86 (240)
T PRK09493 8 SKHFGPTQVLHNI-DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF 86 (240)
T ss_pred EEEECCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence 3344445577777 77777888776 999999999999999999999999754322111 111111
Q ss_pred -CCCC-CeeeeEeecc-c---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 -PVPG-TTLGIVRVEG-V---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~-~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++ +..+.+.+.. . .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 87 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 87 YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1222 2222222110 0 00 012345556664 23677889999999999999999 67889999885
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-10 Score=106.38 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=76.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCccccccc-------------cccccc-
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIV-------------SHLTEA- 350 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v-------------~~~t~s- 350 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|+. .+.+|.+......+ ..+...
T Consensus 8 ~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 8 VSVEDKEILKGV-NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred EEECCEEEEecc-ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccc
Confidence 344445577777 77778888776 9999999999999999995 68888754322111 111111
Q ss_pred -CCCCCee-eeEeeccc----------cc------ccccccccccccC--CCCCCC-CCCHHHHHHHHHhhhh--cCCcc
Q 015085 351 -PVPGTTL-GIVRVEGV----------LP------AQAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 351 -~~pgtT~-~~i~~~~~----------l~------~~~~liDtpGl~~--~~~~~~-~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.++++|. +.+..... .. ....+++..|+.. .++... .||+||+||+.+++++ .|+.+
T Consensus 87 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 87 EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLA 166 (243)
T ss_pred cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEE
Confidence 1122221 11110000 00 0112334445541 345555 5999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 167 llDEPt 172 (243)
T TIGR01978 167 ILDEID 172 (243)
T ss_pred EecCCc
Confidence 999885
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-10 Score=113.90 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=78.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------------------------
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------------------- 343 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------------------- 343 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|+++|++|.+......
T Consensus 21 ~~l~~v-sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNV-SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 477777 77778888766 99999999999999999999999975432111
Q ss_pred -------cccccccC----CCCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -------VSHLTEAP----VPGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -------v~~~t~s~----~pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+...+ +..|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+++|++
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 11111110 11122222221100 00 012345566773 3568899999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
| .|+.+.||+|+
T Consensus 180 L~~~P~lLlLDEPt 193 (305)
T PRK13651 180 LAMEPDFLVFDEPT 193 (305)
T ss_pred HHhCCCEEEEeCCC
Confidence 9 68889999884
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-10 Score=109.00 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=81.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----cc-------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----VS------------- 345 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----v~------------- 345 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +.
T Consensus 11 ~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~ 89 (258)
T PRK11701 11 GLTKLYGPRKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89 (258)
T ss_pred eeEEEcCCceeeeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhc
Confidence 334455445577777 77777888777 99999999999999999999999975432221 11
Q ss_pred ---cccccC----CCCCe-eeeEeec---ccc-c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 346 ---HLTEAP----VPGTT-LGIVRVE---GVL-P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 346 ---~~t~s~----~pgtT-~~~i~~~---~~l-~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+.... .+..| .+.+... ... . ....+++..|+. ..++....||+||+||++++|++ .
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 111110 01111 0011000 000 0 012345566664 24677899999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 170 p~llllDEPt 179 (258)
T PRK11701 170 PRLVFMDEPT 179 (258)
T ss_pred CCEEEEcCCc
Confidence 8999999885
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-10 Score=119.53 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=83.2
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s 350 (413)
.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+ ..+...
T Consensus 7 ~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~ 85 (490)
T PRK10938 7 SQGTFRLSDTKTLQLP-SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQR 85 (490)
T ss_pred EeEEEEcCCeeecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccC
Confidence 3445556655688888 77778888776 999999999999999999999999764221111 111110
Q ss_pred CC-----C-----CCe-eeeEeeccc-cccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PV-----P-----GTT-LGIVRVEGV-LPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~-----p-----gtT-~~~i~~~~~-l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. + +.| .+.+..... ......+++..|+. ..++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 86 NNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 00 0 111 111100000 00112355566664 34688999999999999999999 68999999985
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-10 Score=107.50 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=78.3
Q ss_pred eEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------c
Q 015085 284 VSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------S 345 (413)
Q Consensus 284 vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~ 345 (413)
.|....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|...+.+|.+......+ .
T Consensus 4 ~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 82 (218)
T cd03290 4 TNGYFSWGSGLATLSNI-NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVA 82 (218)
T ss_pred eeeEEecCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEE
Confidence 34455564 34577777 77777888777 999999999999999999999999754322111 1
Q ss_pred ccccc--CCCCCeeeeEeecccccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... -++.+..+.+........ ...+.+..|+.. .++....||+||+||+.+++++ .|+.+
T Consensus 83 ~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~il 162 (218)
T cd03290 83 YAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIV 162 (218)
T ss_pred EEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 11111 012222222222100100 011222223210 1345788999999999999999 68888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 163 llDEPt 168 (218)
T cd03290 163 FLDDPF 168 (218)
T ss_pred EEeCCc
Confidence 888874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-10 Score=122.78 Aligned_cols=129 Identities=23% Similarity=0.195 Sum_probs=85.0
Q ss_pred eEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccC--CCC-Cee
Q 015085 284 VSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAP--VPG-TTL 357 (413)
Q Consensus 284 vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~--~pg-tT~ 357 (413)
-+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|.+.|++|.+... ...+..+...+ ++. |..
T Consensus 10 ~~l~~~y~~~~~il~~v-s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 10 NRVSKVVPPKKQILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred eeEEEEeCCCCeeeeCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHH
Confidence 34445565 46688888 88888888766 99999999999999999999999976432 11222222221 122 222
Q ss_pred eeEeeccc----------------c-c----------------------------ccccccccccccCCCCCCCCCCHHH
Q 015085 358 GIVRVEGV----------------L-P----------------------------AQAKLFDTPGLLHPNQITTRLTREE 392 (413)
Q Consensus 358 ~~i~~~~~----------------l-~----------------------------~~~~liDtpGl~~~~~~~~~LS~ge 392 (413)
+.+.+... . . ....+++..|+...++....||+||
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGq 168 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHH
Confidence 32221000 0 0 0012344556643467889999999
Q ss_pred HHHHHHhhhh--cCCccccCCCC
Q 015085 393 QKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 393 ~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+||+.+++++ .|+.+.||+|+
T Consensus 169 kqrv~la~al~~~p~vlLLDEPt 191 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLDEPT 191 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCC
Confidence 9999999999 68999999985
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-10 Score=106.04 Aligned_cols=126 Identities=24% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCC-----CCcc--------------ccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG-----GDGE--------------EKNIV 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G-----~~~~--------------~~~~v 344 (413)
+...-||..++++.| ++...++.|.. +||+||||||||++|........| ++.. .++.+
T Consensus 12 ~l~~yYg~~~aL~~i-~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v 90 (253)
T COG1117 12 DLNLYYGDKHALKDI-NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV 90 (253)
T ss_pred ceeEEECchhhhccC-ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh
Confidence 344567888889888 77777778777 999999999999999887665543 2211 12222
Q ss_pred ccccc--cCCCCCeeeeEeeccccccc---------------ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTE--APVPGTTLGIVRVEGVLPAQ---------------AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~--s~~pgtT~~~i~~~~~l~~~---------------~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+ .++|.+-.+.+.+-.++.+. ..|+|-+-= +.++....||||||||++|||+| +|+
T Consensus 91 GMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-rL~~sa~~LSGGQQQRLcIARalAv~Pe 169 (253)
T COG1117 91 GMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-RLHKSALGLSGGQQQRLCIARALAVKPE 169 (253)
T ss_pred eeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-HhhCCccCCChhHHHHHHHHHHHhcCCc
Confidence 33322 34454444444332111110 112221110 23456677999999999999999 788
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
+..+|+|
T Consensus 170 VlLmDEP 176 (253)
T COG1117 170 VLLMDEP 176 (253)
T ss_pred EEEecCc
Confidence 8888887
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-10 Score=110.44 Aligned_cols=125 Identities=23% Similarity=0.236 Sum_probs=80.2
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC--------CCCCcccccc------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--------RGGDGEEKNI------------VSH 346 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~--------~G~~~~~~~~------------v~~ 346 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|++++. +|.+...... +..
T Consensus 9 ~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 9 VARRHRAILRDL-SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred EEECCEeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 344545678887 77778888766 9999999999999999999887 6764422111 111
Q ss_pred cccc---CCCCCeeeeEeeccc-c-------c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc------
Q 015085 347 LTEA---PVPGTTLGIVRVEGV-L-------P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK------ 403 (413)
Q Consensus 347 ~t~s---~~pgtT~~~i~~~~~-l-------~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~------ 403 (413)
+... ....|..+.+.+... . . ....+++..|+. ..++....||+||+||+.++++|.
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~ 167 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPH 167 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccccc
Confidence 1111 112233333322100 0 0 011234455664 245778999999999999999996
Q ss_pred -----CCccccCCCC
Q 015085 404 -----PRTYRIKVSL 413 (413)
Q Consensus 404 -----~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 168 ~~~~~p~lllLDEPt 182 (272)
T PRK13547 168 DAAQPPRYLLLDEPT 182 (272)
T ss_pred ccCCCCCEEEEcCcc
Confidence 8999999885
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-10 Score=112.22 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=80.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccccc----CCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLTEA----PVP 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t~s----~~p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..+... .++
T Consensus 15 ~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGI-NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred Ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 3477777 78888888777 999999999999999999999999754322111 111111 122
Q ss_pred CCeeeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|..+.+.+... .. ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 165 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 233333321100 00 012355666664 34678899999999999999999 67888888874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-10 Score=118.82 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=84.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCcccccc-------------cccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~-------------v~~~ 347 (413)
.+..+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+
T Consensus 9 ~nl~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 87 (506)
T PRK13549 9 KNITKTFGGVKALDNV-SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAII 87 (506)
T ss_pred eeeEEEeCCeEeecce-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEE
Confidence 3444556655688888 78888888776 999999999999999999986 68875432211 1111
Q ss_pred ccc--CCCC-CeeeeEeecccc------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 348 TEA--PVPG-TTLGIVRVEGVL------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 348 t~s--~~pg-tT~~~i~~~~~l------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
... .++. |..+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+.+.|
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 88 HQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred EeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111 1122 222332221100 0 012345556664 34678899999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (506)
T PRK13549 168 DEPT 171 (506)
T ss_pred eCCC
Confidence 9985
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-10 Score=107.04 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=82.5
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------c
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------S 345 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~ 345 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+.+|.+......+ .
T Consensus 7 ~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~ 85 (242)
T PRK11124 7 GINCFYGAHQALFDI-TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVG 85 (242)
T ss_pred eeEEEECCeeeEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheE
Confidence 334455555678887 77778888776 999999999999999999999999754322211 1
Q ss_pred ccccc--CCCCCe-eeeEee-ccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPGTT-LGIVRV-EGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pgtT-~~~i~~-~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .+++.| .+.+.. ... .. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.|
T Consensus 86 ~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 165 (242)
T PRK11124 86 MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 122222 222211 000 00 012244555664 34677889999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 166 DEPt 169 (242)
T PRK11124 166 DEPT 169 (242)
T ss_pred cCCC
Confidence 9884
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-10 Score=119.09 Aligned_cols=129 Identities=18% Similarity=0.246 Sum_probs=84.5
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTE 349 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~ 349 (413)
....+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...... +..+..
T Consensus 9 ~~l~~~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 87 (510)
T PRK09700 9 AGIGKSFGPVHALKSV-NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQ 87 (510)
T ss_pred eeeEEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEee
Confidence 3444556655678888 78888888776 99999999999999999999999975432211 111111
Q ss_pred c--CCCCCe-eeeEeeccc----c-c-----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 350 A--PVPGTT-LGIVRVEGV----L-P-----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~----l-~-----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
. .++..| .+.+.+... . . ....+++..|+. ..++.+..||+||+||+.++++| .|+.+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1 112222 222221100 0 0 012345556665 34678899999999999999999 68999
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 168 lLDEPt 173 (510)
T PRK09700 168 IMDEPT 173 (510)
T ss_pred EEeCCC
Confidence 999885
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-10 Score=103.35 Aligned_cols=115 Identities=23% Similarity=0.185 Sum_probs=74.7
Q ss_pred chhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCCCe-eeeEeec
Q 015085 298 DVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPGTT-LGIVRVE 363 (413)
Q Consensus 298 ~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pgtT-~~~i~~~ 363 (413)
.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .+++.| .+.+.+.
T Consensus 16 ~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HF-DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 44 66667788766 99999999999999999999999975432211 1111111 123322 2333221
Q ss_pred ccc--c-------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 GVL--P-------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 ~~l--~-------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 100 0 012345555664 24577889999999999999999 68999999885
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-10 Score=106.01 Aligned_cols=128 Identities=18% Similarity=0.252 Sum_probs=79.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------cc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------SH 346 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------~~ 346 (413)
+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+ ..
T Consensus 8 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 86 (250)
T PRK14247 8 DLKVSFGQVEVLDGV-NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQM 86 (250)
T ss_pred eeEEEECCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEE
Confidence 333445545677777 77777888766 999999999999999999874 578654222111 11
Q ss_pred cccc--CCCC-CeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
+... .++. |..+.+.+.... . . ...+++..|+. ..++....||+||+||+++++++ .|+
T Consensus 87 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 166 (250)
T PRK14247 87 VFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPE 166 (250)
T ss_pred EeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1111 1222 222322211000 0 0 01234444552 23577889999999999999999 589
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 167 lllLDEP~ 174 (250)
T PRK14247 167 VLLADEPT 174 (250)
T ss_pred EEEEcCCC
Confidence 99999885
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-11 Score=102.75 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------cccc--CCCCCeeeeEeeccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEA--PVPGTTLGIVRVEGV 365 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s--~~pgtT~~~i~~~~~ 365 (413)
++....|++++ +|+||+|||||+++|+|...+.+|.+......+.. +... .+++.|......
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~--- 81 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES--- 81 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH---
T ss_pred EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 44456677666 99999999999999999999988865422222111 0000 011121100000
Q ss_pred cccccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 LPAQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 l~~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
......+++..++. ..++....||+||+||+.+++++ .++.+.||+|+
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 00011122222322 12334499999999999999999 78889999885
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-10 Score=115.95 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=81.3
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------cccccc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------IVSHLT 348 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------~v~~~t 348 (413)
+|....++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+..... .+.++.
T Consensus 34 ~g~~~~l~~v-sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 34 TGLVVGVANA-SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred hCCEEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3444445555 66667788777 9999999999999999999999997543321 111111
Q ss_pred cc--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. -+|. |..+.+.+.... . ...++++..|+. ..++....||+|++||+.++|+| .|+.+.+|+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11 1232 333333321100 0 012456677775 45788899999999999999999 67889998885
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.2e-10 Score=117.83 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=83.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA 350 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s 350 (413)
.....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+...
T Consensus 9 ~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK11288 9 GIGKTFPGVKALDDI-SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQE 87 (501)
T ss_pred eeEEEECCEEEEeee-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEec
Confidence 344455555678888 78778888766 99999999999999999999999976432211 1111111
Q ss_pred --CCCC-CeeeeEeecc-----c-cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 351 --PVPG-TTLGIVRVEG-----V-LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 351 --~~pg-tT~~~i~~~~-----~-l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+++ |..+.+.+.. . .. ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 88 LHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred hhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1122 2222222110 0 00 012345556664 34677899999999999999999 6899999998
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 168 t 168 (501)
T PRK11288 168 T 168 (501)
T ss_pred C
Confidence 5
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-10 Score=111.00 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=82.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA 350 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s 350 (413)
.....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+......+ ..+...
T Consensus 8 ~l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 86 (277)
T PRK13652 8 DLCYSYSGSKEALNNI-NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN 86 (277)
T ss_pred EEEEEeCCCCceeeEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecC
Confidence 3344553 33477887 78778888776 999999999999999999999999754322211 111111
Q ss_pred C----CCCCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 P----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ +..|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 87 PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred cccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 11122222211000 000 12345555664 34677899999999999999999 78888888874
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-10 Score=115.24 Aligned_cols=131 Identities=25% Similarity=0.244 Sum_probs=91.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------- 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------- 349 (413)
+.+....+.|+.-...+.+ ++....|++.. +|.||+|||||+++|.|.+.|++|++......+..-..
T Consensus 5 l~~~~itK~f~~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 5 LEMRGITKRFPGVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EEEeccEEEcCCEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 4455667777766667777 88889999988 99999999999999999999999987644433321111
Q ss_pred -----cCCCCCe-eeeEeecccc------c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 350 -----APVPGTT-LGIVRVEGVL------P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 350 -----s~~pgtT-~~~i~~~~~l------~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+-++..| .+++..-..- + ....+.+.-|+. .++.....||-|+||||.|-|+| .++...
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 1123322 2222211000 0 012456677886 78899999999999999999999 678888
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||+|
T Consensus 164 LDEP 167 (501)
T COG3845 164 LDEP 167 (501)
T ss_pred EcCC
Confidence 8887
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-10 Score=106.59 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=78.3
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHL 347 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~ 347 (413)
+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|..++.+|.+...... +..+
T Consensus 5 ~~~l~~~~~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 83 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNV-SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYV 83 (220)
T ss_pred EEEEEEEcCCCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEe
Confidence 3344445543 3578887 77778888776 99999999999999999999999975432211 1111
Q ss_pred ccc--CCCCCeeeeEeecccc-c--ccccccccccccC-CC-----------CCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVL-P--AQAKLFDTPGLLH-PN-----------QITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l-~--~~~~liDtpGl~~-~~-----------~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.+..+.+.+.... . ....+++..|+.. .+ .....||+||+||+.+++++ .|+.+.
T Consensus 84 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 163 (220)
T cd03245 84 PQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163 (220)
T ss_pred CCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 1122222322211000 0 0012233333321 11 23468999999999999999 688999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 164 lDEPt 168 (220)
T cd03245 164 LDEPT 168 (220)
T ss_pred EeCcc
Confidence 99884
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-10 Score=104.10 Aligned_cols=125 Identities=25% Similarity=0.300 Sum_probs=79.4
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc----------ccccc--CCCC
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------HLTEA--PVPG 354 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------~~t~s--~~pg 354 (413)
..++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++..|.+......+. .+... .+++
T Consensus 8 ~~~~~~~il~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~ 86 (232)
T cd03300 8 KFYGGFVALDGV-SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPH 86 (232)
T ss_pred EEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCC
Confidence 344444677777 77777888777 9999999999999999999999886543221111 11100 1122
Q ss_pred Ce-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+.... . ....+++..|+. ..++.+..||+||+|++.+++++ .|+.+.+|+|+
T Consensus 87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 1221110000 0 011344555664 34677899999999999999999 67888888874
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-10 Score=97.87 Aligned_cols=124 Identities=25% Similarity=0.364 Sum_probs=91.7
Q ss_pred CCCccchhhhhhh-hcCcccccccccC---CCCchhh-HHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhH
Q 015085 151 EKPVVCARCHALR-HYGKVKDVTVENL---LPDFDFD-HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (413)
Q Consensus 151 ~~~~~C~RC~~l~-hy~~~~~~~i~~~---~p~~~~~-~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~ 225 (413)
.|+.+||+-.... +|.+.+.+.+.+. .|.+.++ .++.+.+.....++|+|++|.|+.+....+.+.+...+.
T Consensus 13 GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~--- 89 (143)
T PF10662_consen 13 GKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFN--- 89 (143)
T ss_pred CHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccC---
Confidence 4567888755444 7777665543322 2777666 567888888889999999999999988888888877653
Q ss_pred hHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccch
Q 015085 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 226 ~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
+|+|-|+||+|+.....+.+...+|+ +..| ..+|+.+|+.++.|+++|.+.|
T Consensus 90 ---------------~pvIGVITK~Dl~~~~~~i~~a~~~L----~~aG---~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 90 ---------------KPVIGVITKIDLPSDDANIERAKKWL----KNAG---VKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred ---------------CCEEEEEECccCccchhhHHHHHHHH----HHcC---CCCeEEEECCCCcCHHHHHHHH
Confidence 38999999999974433444444454 4445 3578999999999999999877
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.2e-10 Score=106.95 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=82.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC-
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP- 351 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~- 351 (413)
....++...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+...... +..+....
T Consensus 7 l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (256)
T TIGR03873 7 VSWSAGGRLIVDGV-DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85 (256)
T ss_pred EEEEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCc
Confidence 33445555678888 77777888776 99999999999999999999999975432211 11111111
Q ss_pred -CC-CCeeeeEeecc-c----c--c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 -VP-GTTLGIVRVEG-V----L--P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 -~p-gtT~~~i~~~~-~----l--~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .+..+.+.+.. . . . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 86 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 11 22222221100 0 0 0 012344555664 24677889999999999999999 68899999884
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-10 Score=107.03 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc-c--cCCCC
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT-E--APVPG 354 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t-~--s~~pg 354 (413)
+|...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+. . .-++.
T Consensus 31 ~~~~~il~~v-s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGI-SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3445566777 67777788776 99999999999999999999999975432211 11111 0 00111
Q ss_pred Ce-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+... ... ...+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 111111000 000 01345555664 24667889999999999999999 68899999884
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-10 Score=106.23 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=73.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +..+... .++.+..+
T Consensus 16 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 94 (234)
T cd03251 16 PVLRDI-SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE 94 (234)
T ss_pred cceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence 567777 77777888776 99999999999999999999999975432211 1111111 11233333
Q ss_pred eEeecccccc--c----------cccccc-c-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLPA--Q----------AKLFDT-P-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~~--~----------~~liDt-p-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+...... . ..+++. + |+. ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 166 (234)
T cd03251 95 NIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEAT 166 (234)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 3322100000 0 001111 1 232 12455788999999999999999 68889999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-10 Score=110.23 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=79.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------------
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS--------------------- 345 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~--------------------- 345 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+.
T Consensus 8 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (252)
T TIGR03005 8 KRFGILTVLDGL-NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMR 86 (252)
T ss_pred EEeCCeeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHh
Confidence 344444577777 77778888776 9999999999999999999999997543221111
Q ss_pred ----ccccc--CCCC-CeeeeEeecc----ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 ----HLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ----~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+... .++. +..+.+.+.. ... ....+++..|+. ..++....||+||+||+++++++ .|+
T Consensus 87 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 166 (252)
T TIGR03005 87 NKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPK 166 (252)
T ss_pred hCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCC
Confidence 11100 1121 2222221100 000 012344455654 23567889999999999999999 578
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 167 llllDEP~ 174 (252)
T TIGR03005 167 VMLFDEVT 174 (252)
T ss_pred EEEEeCCc
Confidence 89999884
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-10 Score=111.51 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=83.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------cccc
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------SHLT 348 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~~~t 348 (413)
+....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+.
T Consensus 10 ~l~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~ 88 (283)
T PRK13636 10 ELNYNYSDGTHALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVF 88 (283)
T ss_pred eEEEEeCCCCeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEe
Confidence 3344453 34577777 77778888777 999999999999999999999999754332211 1111
Q ss_pred ccC----CCCCeeeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 349 EAP----VPGTTLGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 349 ~s~----~pgtT~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+ ++.|..+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|
T Consensus 89 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 89 QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred cCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111 1223333322110 000 012334555664 35688999999999999999999 6788888887
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
.
T Consensus 169 t 169 (283)
T PRK13636 169 T 169 (283)
T ss_pred c
Confidence 4
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.9e-10 Score=108.61 Aligned_cols=119 Identities=19% Similarity=0.271 Sum_probs=79.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc---CCCC-Ce
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA---PVPG-TT 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s---~~pg-tT 356 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|++.|.+|.+......+ ..+... .+++ |.
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 21 YTLNDV-SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred eeeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 377777 77778888777 999999999999999999999999754322211 111111 1222 22
Q ss_pred eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 233322100 000 12345556665 34678899999999999999999 68888888874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-10 Score=107.16 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred EEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cc
Q 015085 282 HFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SH 346 (413)
Q Consensus 282 ~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~ 346 (413)
.+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+......+ ..
T Consensus 9 ~i~~l~~~~~~~~~~~l~~i-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 87 (269)
T PRK13648 9 VFKNVSFQYQSDASFTLKDV-SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI 87 (269)
T ss_pred EEEEEEEEcCCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence 33444455543 2367777 77778888776 999999999999999999999999755322111 11
Q ss_pred cccc---CCCCCee-eeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 347 LTEA---PVPGTTL-GIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 347 ~t~s---~~pgtT~-~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+... .++++|. +.+.+... .. ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||
T Consensus 88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 167 (269)
T PRK13648 88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD 167 (269)
T ss_pred EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111 1223221 11111000 00 011345555664 34577889999999999999999 68899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 168 EPt 170 (269)
T PRK13648 168 EAT 170 (269)
T ss_pred CCc
Confidence 885
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.8e-10 Score=109.08 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=83.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~----------- 343 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|++. +++|.+......
T Consensus 14 l~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 14 IQVRNLNFYYGKFHALKNI-NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEEEeCCeEEeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 3344445556655678887 77778888776 99999999999999999986 467864322111
Q ss_pred ---ccccccc--CCCCCeeeeEeeccc----cc------cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTEA--PVPGTTLGIVRVEGV----LP------AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~s--~~pgtT~~~i~~~~~----l~------~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++.|..+.+.+... .. ....+++..|+. ..++....||+||+||+.+++++
T Consensus 93 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 172 (260)
T PRK10744 93 RAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172 (260)
T ss_pred hcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 1111111 123333333322100 00 011344555542 23567889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 173 ~~p~lllLDEPt 184 (260)
T PRK10744 173 IRPEVLLLDEPC 184 (260)
T ss_pred CCCCEEEEcCCC
Confidence 68899999885
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-10 Score=107.66 Aligned_cols=128 Identities=17% Similarity=0.225 Sum_probs=79.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----c--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----V-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----v-------------- 344 (413)
+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +
T Consensus 8 ~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
T TIGR02323 8 GLSKSYGGGKGCRDV-SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86 (253)
T ss_pred eeEEEeCCceEeecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhc
Confidence 334445444567777 77777888777 99999999999999999999999975432211 1
Q ss_pred --ccccccC----CCCCe-eeeEe-----eccc-----cccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEAP----VPGTT-LGIVR-----VEGV-----LPAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s~----~pgtT-~~~i~-----~~~~-----l~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+.... .+..+ .+.+. .... ......+++..|+. ..++....||+||+||++++++| .
T Consensus 87 ~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 166 (253)
T TIGR02323 87 EWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTR 166 (253)
T ss_pred ceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcC
Confidence 1111110 00000 00000 0000 00012344555663 34677889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 167 p~vlllDEP~ 176 (253)
T TIGR02323 167 PRLVFMDEPT 176 (253)
T ss_pred CCEEEEcCCC
Confidence 8889999885
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.9e-11 Score=108.61 Aligned_cols=126 Identities=22% Similarity=0.266 Sum_probs=79.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------cccccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HLTEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~t~s~ 351 (413)
...+.||...+++.+ ++...+|.+.. +||||+|||||+.++.++.+.++|.+..+...+. .+.+..
T Consensus 6 nv~K~y~~~~vl~~i-sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N 84 (252)
T COG4604 6 NVSKSYGTKVVLDDV-SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQEN 84 (252)
T ss_pred hhhHhhCCEEeeccc-eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhc
Confidence 345677778888888 66667777766 9999999999999999999999998653322221 111111
Q ss_pred C---CCCeeeeEee---cc---cc--------cccccccccccccCCCCCCCCCCHHHHHHHHHhhhhcCCc--cccCCC
Q 015085 352 V---PGTTLGIVRV---EG---VL--------PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRT--YRIKVS 412 (413)
Q Consensus 352 ~---pgtT~~~i~~---~~---~l--------~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~~~~--~~l~~~ 412 (413)
. .-|.++.+.+ ++ ++ +...+.++...+ .+++.++|||||+||..+|..|.+.| ..|++|
T Consensus 85 ~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l--~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 85 HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL--SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch--HHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 0 1122232222 11 00 011223333333 45899999999999999999998765 345666
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
|
T Consensus 163 L 163 (252)
T COG4604 163 L 163 (252)
T ss_pred c
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-10 Score=106.48 Aligned_cols=128 Identities=21% Similarity=0.270 Sum_probs=82.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------- 344 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+
T Consensus 10 ~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T PRK10619 10 DLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLR 88 (257)
T ss_pred eeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHH
Confidence 334445445677887 77778888776 999999999999999999999999754322111
Q ss_pred ------cccccc--CCCC-CeeeeEeecc----ccc------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh-
Q 015085 345 ------SHLTEA--PVPG-TTLGIVRVEG----VLP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 345 ------~~~t~s--~~pg-tT~~~i~~~~----~l~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
..+... -+++ +..+.+.+.. ... ....+++..|+.. .++....||+||+||++++|+|
T Consensus 89 ~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~ 168 (257)
T PRK10619 89 LLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 168 (257)
T ss_pred HHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 111111 1122 2222221100 000 0123456667753 2577899999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 169 ~~p~llllDEPt 180 (257)
T PRK10619 169 MEPEVLLFDEPT 180 (257)
T ss_pred cCCCEEEEeCCc
Confidence 78999999885
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-10 Score=109.07 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=80.6
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+.. +++|.+......
T Consensus 8 ~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 86 (253)
T PRK14242 8 EARGLSFFYGDFQALHDI-SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELR 86 (253)
T ss_pred EEeeeEEEECCeeeecce-eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHh
Confidence 334444555555677777 77778888776 99999999999999999864 467764422211
Q ss_pred --ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 87 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 87 RRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred hcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 1111111 1223333332211000 00 01234444552 13566789999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 167 ~p~llllDEPt 177 (253)
T PRK14242 167 EPEVLLMDEPA 177 (253)
T ss_pred CCCEEEEeCCc
Confidence 68889999885
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=108.22 Aligned_cols=120 Identities=24% Similarity=0.253 Sum_probs=76.1
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccccC---CCC-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEAP---VPG- 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s~---~pg- 354 (413)
..++..+ ++...+|+.++ +|+||+|||||+++|.|++.|.+|.+...... +..+.+.+ +-+
T Consensus 17 ~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDV-SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeee-EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 4667777 67777776555 99999999999999999999999975321111 11111111 111
Q ss_pred CeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+.+.+.+... ++. ..+.+...|+. ..++.+..|||||+||++||..| .|+.+.||+|.
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 11111111000 000 01334455664 35788999999999999999988 78889999874
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=120.88 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=83.8
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-----------IVSHL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-----------~v~~~ 347 (413)
|.+-...-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+|.|+|+++|.+|.+..+.. .+..+
T Consensus 335 I~~~~vsf~Y~~~~~vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 335 LELRDLSFGYPGSPPVLDGV-SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEEEecCCCCceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 555555555543 3478888 77777787666 9999999999999999999999998654332 23333
Q ss_pred cccC--CCCCeeeeEeeccc-cc-cc-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEAP--VPGTTLGIVRVEGV-LP-AQ-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s~--~pgtT~~~i~~~~~-l~-~~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
.+.+ +.||-++++.+... .. +. ....+..| +.. -...-..|||||+||+++||++ +++.+.
T Consensus 414 ~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 414 AQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred ccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333 35666666554211 00 00 11122222 211 0122356999999999999999 678888
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||++
T Consensus 494 LDE~ 497 (529)
T TIGR02868 494 LDEP 497 (529)
T ss_pred EeCC
Confidence 8886
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=102.43 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=75.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---------cCCCCC-----ee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------APVPGT-----TL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------s~~pgt-----T~ 357 (413)
..++..+ ++....|++.. .|+||+|||||+++|+|++.|.+|.+......+..... .+.+|. ..
T Consensus 15 ~~lf~~L-~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ 93 (209)
T COG4133 15 RTLFSDL-SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTAL 93 (209)
T ss_pred ceeecce-eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHH
Confidence 4566666 56566677544 99999999999999999999999987654333222111 122332 22
Q ss_pred eeEeecccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccccCCCC
Q 015085 358 GIVRVEGVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~l~~~~ 413 (413)
+.+.+--.+.+ ....+...|+. ..+-....||.|+|+||++||-+. .-...||+|+
T Consensus 94 ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 94 ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred HHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 22222111111 11334455665 345778999999999999999883 3456777764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-10 Score=109.36 Aligned_cols=132 Identities=21% Similarity=0.244 Sum_probs=84.2
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV---------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v---------- 344 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|.+......+
T Consensus 20 l~~~nl~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 20 MRARDVSVFYGEKQALFDV-DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEEEeEEEEECCEEEEEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence 4444555566656678888 78888888776 999999999999999999874 778654222111
Q ss_pred ----cccccc--CCCCCeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 345 ----SHLTEA--PVPGTTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 345 ----~~~t~s--~~pgtT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
..+... .++++..+.+.+.... . . ...+++..|+. ..++....||+||+||+.++++|
T Consensus 99 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 99 RARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 111111 1223333333211000 0 0 02245555663 23566889999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 179 ~~~p~lllLDEPt 191 (267)
T PRK14235 179 AVSPEVILMDEPC 191 (267)
T ss_pred HcCCCEEEEeCCC
Confidence 78899999885
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8e-10 Score=106.40 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=77.5
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccccC----CCCCe
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEAP----VPGTT 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s~----~pgtT 356 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+.... .+..|
T Consensus 27 ~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 27 EAVKPL-SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred ceeeee-eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 577787 78788888777 999999999999999999999999754322111 1111110 11111
Q ss_pred e-eeEeeccc----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 L-GIVRVEGV----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~-~~i~~~~~----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. +.+.+... .. ....+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 177 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL 177 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 1 11110000 00 012356666773 23566789999999999999999 78999999885
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-10 Score=102.74 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=79.8
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+..+.+|.+...... +.
T Consensus 7 l~~~~l~~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNV-SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEEEeCCCCcccccCc-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 334444445543 3577887 77777888776 99999999999999999999999975432211 11
Q ss_pred ccccc--CCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+... -++++..+.+....... ...+.+.-. .+.....||+||+||+.++|++ .|+.+.+|+|+
T Consensus 86 ~v~q~~~~~~~tv~~~l~~~~~~~-~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 86 IIPQDPTLFSGTIRSNLDPFDEYS-DEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred EEecCCcccCccHHHHhcccCCCC-HHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 11111 12333333332210000 001111111 2456788999999999999999 68888888874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-10 Score=106.72 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=78.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc---------------ccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS---------------HLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~---------------~~t~s--~~pg 354 (413)
..+++.+ ++....|+++. +|+||+|||||+++|+|.+++.+|.+......+. .+... .++.
T Consensus 18 ~~il~~v-s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDI-NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 4578887 77777888777 9999999999999999999999997543222111 11111 1222
Q ss_pred -CeeeeEeeccccc----------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVLP----------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l~----------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.+..... ....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|.
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~ 169 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPT 169 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2222221100000 112455666775 34677889999999999999999 67888888874
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-10 Score=105.48 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=78.1
Q ss_pred EeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccc
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t 348 (413)
+.+....++. ..+++.+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+...... +..+.
T Consensus 5 ~~~l~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 83 (229)
T cd03254 5 FENVNFSYDEKKPVLKDI-NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL 83 (229)
T ss_pred EEEEEEecCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence 3344445543 3477777 77778888766 99999999999999999999999975432211 11111
Q ss_pred cc--CCCCCeeeeEeeccccccc---ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 349 EA--PVPGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 349 ~s--~~pgtT~~~i~~~~~l~~~---~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.. .++++..+.+.+....... ...++.. |+. ..++....||+||+||+.++++| .|+.+.|
T Consensus 84 q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 84 QDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred CCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 1122322322221000000 0011111 222 11344688999999999999999 6888999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 164 DEP~ 167 (229)
T cd03254 164 DEAT 167 (229)
T ss_pred eCcc
Confidence 8885
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-10 Score=107.80 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=71.9
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-ccccccccc-cccCCCCCe-eeeEeeccc---ccc
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-EEKNIVSHL-TEAPVPGTT-LGIVRVEGV---LPA 368 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-~~~~~v~~~-t~s~~pgtT-~~~i~~~~~---l~~ 368 (413)
++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+. .....+... ...-+++.| .+.+.+... ...
T Consensus 3 l~~v-s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 3 LDKT-DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 3444 56667777776 999999999999999999999999764 221111000 011123322 233322110 000
Q ss_pred ---ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 ---QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ---~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+.+..++. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~ 132 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKL 132 (213)
T ss_pred HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 00112223333 23567889999999999999999 67888998873
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-10 Score=119.38 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=86.8
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc---CCCC-Cee
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA---PVPG-TTL 357 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s---~~pg-tT~ 357 (413)
......++...+++.+ ++....|++++ +|+||+|||||+++|+|+..|.+|.+..... .+..+... ..+. |..
T Consensus 326 ~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~ 404 (552)
T TIGR03719 326 ENLSKGFGDKLLIDDL-SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVW 404 (552)
T ss_pred eeEEEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHH
Confidence 3344556656688888 78888888776 9999999999999999999999997653211 12233222 1222 333
Q ss_pred eeEeeccc---ccc----cccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~----~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+..... ... ...+++..|+.. .++.+..||+||+||+++++++ .|+.+.||+|+
T Consensus 405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 33222110 000 123566677742 4678899999999999999999 68889999885
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.9e-10 Score=104.75 Aligned_cols=129 Identities=22% Similarity=0.294 Sum_probs=80.6
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc-------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV------------- 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v------------- 344 (413)
.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+++. +|.+......+
T Consensus 8 ~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 86 (253)
T PRK14267 8 VNLRVYYGSNHVIKGV-DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRRE 86 (253)
T ss_pred EeEEEEeCCeeeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhc
Confidence 3444555555678888 78778888777 9999999999999999998863 77654222111
Q ss_pred -cccccc--CCCC-CeeeeEeecccc-----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 -SHLTEA--PVPG-TTLGIVRVEGVL-----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 -~~~t~s--~~pg-tT~~~i~~~~~l-----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... -+++ |..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 87 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14267 87 VGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAM 166 (253)
T ss_pred eeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhc
Confidence 111111 1222 222222110000 00 01234444542 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 167 ~p~llllDEP~ 177 (253)
T PRK14267 167 KPKILLMDEPT 177 (253)
T ss_pred CCCEEEEcCCC
Confidence 67889999884
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-10 Score=120.00 Aligned_cols=128 Identities=23% Similarity=0.179 Sum_probs=83.0
Q ss_pred EEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC--CCC-Ceee
Q 015085 285 SAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--VPG-TTLG 358 (413)
Q Consensus 285 Sa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~--~pg-tT~~ 358 (413)
.....|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+.... ..+..+...+ ++. |..+
T Consensus 9 nls~~~~~~~~il~~i-s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e 87 (552)
T TIGR03719 9 RVSKVVPPKKEILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRE 87 (552)
T ss_pred eEEEecCCCCeeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHH
Confidence 3444555 45688888 78888888666 999999999999999999999999754321 1222222221 122 3333
Q ss_pred eEeeccc-----------------c-cc---------------------------cccccccccccCCCCCCCCCCHHHH
Q 015085 359 IVRVEGV-----------------L-PA---------------------------QAKLFDTPGLLHPNQITTRLTREEQ 393 (413)
Q Consensus 359 ~i~~~~~-----------------l-~~---------------------------~~~liDtpGl~~~~~~~~~LS~ge~ 393 (413)
.+.+... . .. ...+++..|+...++....||+||+
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk 167 (552)
T TIGR03719 88 NVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGER 167 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHH
Confidence 3221100 0 00 0113344455434677899999999
Q ss_pred HHHHHhhhh--cCCccccCCCC
Q 015085 394 KLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 394 q~v~i~r~l--~~~~~~l~~~~ 413 (413)
||+.+++++ .|+.+.||+|+
T Consensus 168 qrv~la~al~~~p~lLLLDEPt 189 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPT 189 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCC
Confidence 999999999 68899999985
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-10 Score=106.58 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=81.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|...+ .+|.+......+
T Consensus 7 ~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (251)
T PRK14270 7 SKNLNLWYGEKQALNDI-NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK 85 (251)
T ss_pred EEEeEEEECCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh
Confidence 34444555555677777 77777888776 999999999999999999865 677644222111
Q ss_pred --cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+|++.+++++ .
T Consensus 86 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 165 (251)
T PRK14270 86 RVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVK 165 (251)
T ss_pred heEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 111111 1223333333221000 00 01345555542 23567889999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 166 p~llllDEP~ 175 (251)
T PRK14270 166 PDVILMDEPT 175 (251)
T ss_pred CCEEEEeCCc
Confidence 8999999885
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-10 Score=110.03 Aligned_cols=119 Identities=24% Similarity=0.283 Sum_probs=78.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccccC----C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEAP----V 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s~----~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.|.+|.+......+ ..+...+ +
T Consensus 20 ~~l~~v-sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 98 (288)
T PRK13643 20 RALFDI-DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF 98 (288)
T ss_pred cceeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence 477777 77778888766 999999999999999999999999754322111 1111111 1
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|..+.+.+... ... ...+++..|+. ..++....||+||+||++++++| .|+...||+|.
T Consensus 99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt 172 (288)
T PRK13643 99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172 (288)
T ss_pred cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 2233333222100 000 12345555763 24678899999999999999999 68888888874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-10 Score=108.91 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=81.1
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +++|.+......
T Consensus 23 ~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (268)
T PRK14248 23 EVKDLSIYYGEKRAVNDI-SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLR 101 (268)
T ss_pred EEEEEEEEeCCceeeece-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHh
Confidence 344445566656678887 77778888776 99999999999999999764 577865422211
Q ss_pred --ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++
T Consensus 102 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 102 REIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred ccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 1111111 1233333322211000 00 01223344442 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 182 ~p~lllLDEPt 192 (268)
T PRK14248 182 KPAVLLLDEPA 192 (268)
T ss_pred CCCEEEEcCCC
Confidence 68899999885
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-10 Score=106.42 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=80.5
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccc------------cccccc
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNI------------VSHLTE 349 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~------------v~~~t~ 349 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+...... +..+..
T Consensus 8 l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 86 (246)
T PRK14269 8 LNLFYGKKQALFDI-NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQ 86 (246)
T ss_pred eEEEECCEeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEec
Confidence 34455545677777 77777888776 99999999999999999874 577865422111 111111
Q ss_pred c--CCCCCeeeeEeecccc-----c-c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 350 A--PVPGTTLGIVRVEGVL-----P-A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 350 s--~~pgtT~~~i~~~~~l-----~-~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
. -++.+..+.+.+.... . . ...+++..|+. ..++....||+||+||++++|++ .|+.+.|
T Consensus 87 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 87 QPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred CCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1233333333221000 0 0 11345555662 13566788999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 167 DEP~ 170 (246)
T PRK14269 167 DEPT 170 (246)
T ss_pred cCCc
Confidence 9885
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-10 Score=116.91 Aligned_cols=124 Identities=17% Similarity=0.232 Sum_probs=80.7
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc--CC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA--PV 352 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s--~~ 352 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... .+
T Consensus 7 ~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 85 (491)
T PRK10982 7 SFPGVKALDNV-NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLV 85 (491)
T ss_pred EeCCEEeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccc
Confidence 34445677787 77778888766 99999999999999999999999975432211 1111111 11
Q ss_pred CC-CeeeeEeeccc-c-----c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGV-L-----P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~-l-----~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+... . . ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 86 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 86 LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 22 22222221100 0 0 011244445664 34677899999999999999999 58999999985
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=104.81 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+......|+...+++.+ ++....|+++. +|+||+|||||+++|+|+..+ ++|.+......+
T Consensus 7 i~~v~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~ 85 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDV-NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR 85 (258)
T ss_pred EeeEEEEECCEeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc
Confidence 34444555545678887 77778888776 999999999999999999874 578654322111
Q ss_pred --cccccc--CCCC-CeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 --SHLTEA--PVPG-TTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 --~~~t~s--~~pg-tT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... .++. |..+.+.+.... .. ...+++..|+. ..++....||+||+||+++++++
T Consensus 86 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (258)
T PRK14241 86 TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165 (258)
T ss_pred ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 111110 1121 222222110000 00 01234444541 23577889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 166 ~p~llllDEPt 176 (258)
T PRK14241 166 EPDVLLMDEPC 176 (258)
T ss_pred CCCEEEEcCCC
Confidence 68899999885
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-10 Score=112.01 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=78.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------------------c
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------------------V 344 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------------------v 344 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.+|.+...... +
T Consensus 40 ~~L~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 40 VALNNI-SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 478888 78778888777 99999999999999999999999975432211 1
Q ss_pred cccccc----CCCCCeeeeEeeccc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 345 SHLTEA----PVPGTTLGIVRVEGV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 345 ~~~t~s----~~pgtT~~~i~~~~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
..+... -++.|..+.+.+... .. ....+++..|+. ..++....||+||+||++++|+| .|+.+
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 111111 112222222221100 00 011345555664 24677889999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 199 LLDEPt 204 (320)
T PRK13631 199 IFDEPT 204 (320)
T ss_pred EEECCc
Confidence 998874
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=103.42 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=76.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCccccccccccc-------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIVSHLT------------- 348 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v~~~t------------- 348 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..+.+|.+......+....
T Consensus 12 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 90 (252)
T CHL00131 12 NLHASVNENEILKGL-NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAF 90 (252)
T ss_pred eEEEEeCCEEeeecc-eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEe
Confidence 333445444577777 77778888776 999999999999999997 4678887543221111110
Q ss_pred c--cCCCCCee-eeEeeccc-------cc---------cccccccccccc--CCCCCCC-CCCHHHHHHHHHhhhh--cC
Q 015085 349 E--APVPGTTL-GIVRVEGV-------LP---------AQAKLFDTPGLL--HPNQITT-RLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 349 ~--s~~pgtT~-~~i~~~~~-------l~---------~~~~liDtpGl~--~~~~~~~-~LS~ge~q~v~i~r~l--~~ 404 (413)
. ..++++|. +.+.+... .. ....+++..|+. ..++... .||+||+||+.+++++ .|
T Consensus 91 q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 170 (252)
T CHL00131 91 QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDS 170 (252)
T ss_pred ccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCC
Confidence 0 01122221 11100000 00 001233444553 1245555 5999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 171 ~llllDEPt 179 (252)
T CHL00131 171 ELAILDETD 179 (252)
T ss_pred CEEEEcCCc
Confidence 899999885
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=104.68 Aligned_cols=116 Identities=21% Similarity=0.222 Sum_probs=75.4
Q ss_pred cchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc--cCCCC-CeeeeEee
Q 015085 297 DDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE--APVPG-TTLGIVRV 362 (413)
Q Consensus 297 ~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~--s~~pg-tT~~~i~~ 362 (413)
..+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+......+ ..+.. ..+++ |..+.+.+
T Consensus 15 ~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 15 MEF-DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eee-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHh
Confidence 344 66677788777 999999999999999999999999754322111 11111 11222 22333321
Q ss_pred ccc--c--c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 363 EGV--L--P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 363 ~~~--l--~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . . ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 100 0 0 012345555664 34677889999999999999999 67888888874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=101.93 Aligned_cols=115 Identities=21% Similarity=0.182 Sum_probs=74.9
Q ss_pred chhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc--cCCCCCe-eeeEeec
Q 015085 298 DVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE--APVPGTT-LGIVRVE 363 (413)
Q Consensus 298 ~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~--s~~pgtT-~~~i~~~ 363 (413)
.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+.. ..+++.| .+.+.+.
T Consensus 17 ~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RF-DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred ee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 44 67777788776 999999999999999999999999754322211 11111 1123322 2222211
Q ss_pred ccc----c-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 364 GVL----P-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 364 ~~l----~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... . ....+++..|+. ..++.+..||+||+|++.+++++ .|+.+.||+|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 000 0 012345555664 34678889999999999999999 68899999885
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-10 Score=119.04 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=87.0
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-ccccccccC---CCC-Ce
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEAP---VPG-TT 356 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s~---~pg-tT 356 (413)
+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+.... .+. |.
T Consensus 327 ~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 327 AENLSKSFGDRLLIDDL-SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred EEeEEEEECCeeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCH
Confidence 34445566666688888 78888888766 9999999999999999999999997653211 122222221 122 22
Q ss_pred eeeEeeccc---cc----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV---LP----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~---l~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 406 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 406 WEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred HHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 232221100 00 011345666774 24678899999999999999999 78999999985
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=105.33 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=78.3
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC---C-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP---V- 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~---~- 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+...... +..+...+ +
T Consensus 24 ~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 24 APVLTNV-SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred eEEeeCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 4577777 77778888776 99999999999999999999999975432211 11111111 1
Q ss_pred CCCe-eeeEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.... .+. ....+++..|+. ..++....||+||+|++.++|++ .|+.+.||+|+
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt 178 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAV 178 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11111000 000 012345666773 24677889999999999999999 68888888875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7e-10 Score=107.93 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=80.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------cccccc----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEA----PV 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s----~~ 352 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+..|.+......+ ..+... .+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 21 QAIHDV-NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred Cceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 478888 78888888766 999999999999999999999999754322111 111111 11
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt 173 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 2233333322100 000 12455566774 24677899999999999999999 78888888874
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-10 Score=108.44 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=81.2
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++ +++|.+......
T Consensus 15 ~i~nl~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~ 93 (269)
T PRK14259 15 SLQNVTISYGTFEAVKNV-FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVR 93 (269)
T ss_pred EEEeEEEEECCEEEEcce-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHh
Confidence 334444556655678888 78878888776 99999999999999999986 477765422211
Q ss_pred --ccccccc--CCCCCeeeeEeeccccc---c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVLP---A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l~---~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.|..+.+.+..... . ...+++..|+. ..++....||+||+||+++++++ .|
T Consensus 94 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 173 (269)
T PRK14259 94 RRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173 (269)
T ss_pred hceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 12222233222110000 0 01123333431 23567788999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 174 ~lllLDEPt 182 (269)
T PRK14259 174 EVILMDEPC 182 (269)
T ss_pred CEEEEcCCC
Confidence 999999885
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=106.23 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=78.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------ccccccC---CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEAP---VPGT 355 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s~---~pgt 355 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+ ..+...+ ..++
T Consensus 23 ~~vl~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDV-NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 3578887 78888888776 999999999999999999999999754332111 1111111 1111
Q ss_pred e-eeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+... ... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 1 122211100 000 11345555664 34678899999999999999999 67888888874
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.6e-10 Score=103.83 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=72.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------ccccc--CCCC-CeeeeEeecc-----
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------HLTEA--PVPG-TTLGIVRVEG----- 364 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------~~t~s--~~pg-tT~~~i~~~~----- 364 (413)
++....|++++ +|+||+|||||+++|+|+.++.+|.+......+. .+... -++. |..+.+.+..
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~ 84 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP 84 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence 44556677766 9999999999999999999999997653222111 11111 1121 2222222110
Q ss_pred cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 ~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.... ...+++..|+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 142 (230)
T TIGR01184 85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142 (230)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 0000 12345555664 24577889999999999999999 68999999884
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.6e-10 Score=108.90 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=76.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCcccccc----------------cccccccC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNI----------------VSHLTEAP- 351 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~----------------v~~~t~s~- 351 (413)
.+++.+ ++...+|+++. +|+||+|||||+++|+|++.+ .+|.+...... +..+.+.+
T Consensus 21 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 21 RAVDRI-SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 578888 78888898777 999999999999999999873 56654322211 11222211
Q ss_pred ---CCCCeee-eEeecc----ccc------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 352 ---VPGTTLG-IVRVEG----VLP------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 352 ---~pgtT~~-~i~~~~----~l~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.|..|.. .+.... ... ....+++..|+.. .++..+.||+||+||++++++| .|+.+.+|+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 1222221 000000 000 0124556667742 3578899999999999999999 688888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 180 Pt 181 (326)
T PRK11022 180 PT 181 (326)
T ss_pred CC
Confidence 74
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-10 Score=107.90 Aligned_cols=130 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|++......+
T Consensus 15 ~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 93 (258)
T PRK14268 15 VENLNLWYGEKQALKNV-SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK 93 (258)
T ss_pred EeeeEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh
Confidence 34444556555677887 77778888776 999999999999999999874 678644322111
Q ss_pred --cccccc--CCCCCeeeeEeeccc---ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|
T Consensus 94 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 173 (258)
T PRK14268 94 NVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKP 173 (258)
T ss_pred hEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 111111 122222232221100 000 01244555542 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 174 ~llllDEPt 182 (258)
T PRK14268 174 KIILFDEPT 182 (258)
T ss_pred CEEEEeCCC
Confidence 999999885
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-10 Score=102.03 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=65.7
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccccCCCCCeeeeEeeccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~ 369 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.. .+.+|.+......+. .... ....++.....+...
T Consensus 20 ~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~-~~i~~~~q~~~~~~~ 93 (192)
T cd03232 20 RQLLNNI-SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ-RSTGYVEQQDVHSPN 93 (192)
T ss_pred eEeEEcc-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh-hceEEecccCccccC
Confidence 3577777 77777888776 9999999999999999975 367786442221111 0000 001111110000001
Q ss_pred ccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 370 AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 370 ~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.|.-.+.. ....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 94 ~tv~~~l~~~~---~~~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 94 LTVREALRFSA---LLRGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred CcHHHHHHHHH---HHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 11111111100 0127999999999999999 67888888874
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.4e-10 Score=107.57 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=79.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccccC----C
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTEAP----V 352 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~s~----~ 352 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+...+ +
T Consensus 21 ~~L~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 21 RALYDV-NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred cceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 478888 78888888777 999999999999999999999999764332211 1111110 1
Q ss_pred CCCeeeeEeeccc---ccc------ccccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTTLGIVRVEGV---LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.|..+.+.+... ... ...+++..|+. . .++....||+||+||+.++++| .|+.+.+|+|.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt 173 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 1222222221100 000 12345566774 2 4677899999999999999999 78888888874
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-09 Score=101.62 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=77.7
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHL 347 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~ 347 (413)
...+.||...+ .+ ++...+ ++++ +|+||+|||||+++|+|+++|.+|.+......+ ..+
T Consensus 5 ~l~~~~~~~~~--~v-sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDFTL--KI-DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCeee--Cc-eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 33455555443 55 666667 7666 999999999999999999999999754322111 111
Q ss_pred ccc--CCCCCe-eeeEeecccc-c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL-P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l-~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... -+++.| .+.+.+.... . ....+++..|+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 112222 2222111000 0 012345555664 24577889999999999999999 68889999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.9e-10 Score=104.02 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=70.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCcccccc----------cccccccC---C-CCCee-eeE
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNI----------VSHLTEAP---V-PGTTL-GIV 360 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~----------v~~~t~s~---~-pgtT~-~~i 360 (413)
++....|++++ +|+||+|||||+++|+|+.+| ++|.+...... +..+.... + +..|. +.+
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHH
Confidence 45556777766 999999999999999999998 78875432211 11111111 1 11111 100
Q ss_pred eeccc---c-c-----cccccccccccc----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGV---L-P-----AQAKLFDTPGLL----HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~---l-~-----~~~~liDtpGl~----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..... . . ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt 153 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00000 0 0 012344455554 23567889999999999999999 68899999885
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-10 Score=103.53 Aligned_cols=129 Identities=21% Similarity=0.239 Sum_probs=81.2
Q ss_pred eEEEeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-----------cccccccc-
Q 015085 284 VSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-----------NIVSHLTE- 349 (413)
Q Consensus 284 vSa~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-----------~~v~~~t~- 349 (413)
.+..+.|+... .++++ ++..+.|++.. +|+||+||||++++|+.++.|++|.+.... ..+..++.
T Consensus 5 ~~l~K~y~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 5 TDLTKSYGSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred eehhhhccCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC
Confidence 34445555422 45555 66778888887 999999999999999999999999754221 11111110
Q ss_pred cCC--CCCeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 APV--PGTTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s~~--pgtT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+ .-|..+.+.+.+.+.+ ...+.+..++. ..++.+..+|.|.+|+|.+||+| +|+.+.+|+|.
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 000 0122222322222111 01344444554 34677889999999999999999 78899999874
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.5e-10 Score=107.24 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc--------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI-------------- 343 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~-------------- 343 (413)
......|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.+. +|.+......
T Consensus 11 ~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 89 (254)
T PRK14273 11 ENLNLFYTDFKALNNI-NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRK 89 (254)
T ss_pred eeeEEEeCCceeecce-eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhc
Confidence 3334455545678887 78778888776 9999999999999999999864 6764322111
Q ss_pred ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.|..+.+.+.... .. ...+++..|+. ..++....||+||+||++++|+| .|
T Consensus 90 i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (254)
T PRK14273 90 IGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEP 169 (254)
T ss_pred eEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1111111 1122222222211000 00 01122333431 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 170 ~lllLDEPt 178 (254)
T PRK14273 170 NVILMDEPT 178 (254)
T ss_pred CEEEEeCCC
Confidence 999999885
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-10 Score=120.60 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=82.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-cccccccC---CCCCee
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-VSHLTEAP---VPGTTL 357 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-v~~~t~s~---~pgtT~ 357 (413)
+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|...|++|.+...... +..+.... ..++..
T Consensus 6 i~~ls~~~~~~~il~~i-s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNA-ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred EeeEEEEeCCceeEeCc-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence 34445566767788888 77777787665 99999999999999999999999976432211 11111100 001111
Q ss_pred eeEe------------------------------eccc----c---------cccccccccccccCCCCCCCCCCHHHHH
Q 015085 358 GIVR------------------------------VEGV----L---------PAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 358 ~~i~------------------------------~~~~----l---------~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
+.+. .... + .....+++..|+. .++.+..|||||+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekq 163 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLR 163 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHH
Confidence 1000 0000 0 0011234455664 36788999999999
Q ss_pred HHHHhhhh--cCCccccCCCC
Q 015085 395 LVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 395 ~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+.++++| .|+.+.||+|+
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt 184 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPT 184 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCC
Confidence 99999999 68999999985
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=103.13 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=41.2
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCc
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG 338 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~ 338 (413)
+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+. ++.+|.+.
T Consensus 6 nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~ 61 (248)
T PRK09580 6 DLHVSVEDKAILRGL-NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61 (248)
T ss_pred EEEEEeCCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEE
Confidence 334455545678887 77777888766 9999999999999999995 58888654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=116.56 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=85.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc--CCCCCeee
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA--PVPGTTLG 358 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s--~~pgtT~~ 358 (413)
+.+..+.||...+++.+ ++....|++++ +|+||+|||||+++|+|...|++|.+..... .+..+... ....+..+
T Consensus 4 i~nls~~~g~~~~l~~v-s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~ 82 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNA-TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALE 82 (638)
T ss_pred EEEEEEEeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHH
Confidence 34556677877889998 78888887666 9999999999999999999999997653221 11111110 00111111
Q ss_pred eEeec---------------------------cc---cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhh
Q 015085 359 IVRVE---------------------------GV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 359 ~i~~~---------------------------~~---l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r 400 (413)
.+... .. .. ....+++..|+. ..++.+..|||||+||+.+++
T Consensus 83 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~ 162 (638)
T PRK10636 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQ 162 (638)
T ss_pred HHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHH
Confidence 11000 00 00 011345566774 346788999999999999999
Q ss_pred hh--cCCccccCCCC
Q 015085 401 EL--KPRTYRIKVSL 413 (413)
Q Consensus 401 ~l--~~~~~~l~~~~ 413 (413)
+| .|+.+.||+|.
T Consensus 163 aL~~~P~lLLLDEPt 177 (638)
T PRK10636 163 ALICRSDLLLLDEPT 177 (638)
T ss_pred HHccCCCEEEEcCCC
Confidence 99 68999999884
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.7e-10 Score=104.55 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=81.2
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +
T Consensus 12 l~~~~l~~~~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 90 (226)
T cd03248 12 VKFQNVTFAYPTRPDTLVLQDV-SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90 (226)
T ss_pred EEEEEEEEEeCCCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhE
Confidence 334444445542 2477777 77777888776 99999999999999999999999975422211 1
Q ss_pred cccccc--CCCCCeeeeEeeccccc------c------cccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVLP------A------QAKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l~------~------~~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... -++++..+.+.+..... . ...+++.. |+. ..++....||+||+||+.+++++ .|+
T Consensus 91 ~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (226)
T cd03248 91 SLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQ 170 (226)
T ss_pred EEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 111111 11223333222111000 0 00122222 554 23566889999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 171 llllDEPt 178 (226)
T cd03248 171 VLILDEAT 178 (226)
T ss_pred EEEEeCCc
Confidence 89999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.4e-10 Score=115.19 Aligned_cols=126 Identities=21% Similarity=0.218 Sum_probs=80.4
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCcccccc-------------ccccccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNI-------------VSHLTEA 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~-------------v~~~t~s 350 (413)
...|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+...
T Consensus 8 ~~~~~~~~il~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 86 (500)
T TIGR02633 8 VKTFGGVKALDGI-DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQE 86 (500)
T ss_pred EEEeCCeEeecce-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeec
Confidence 3445555678888 78888888766 999999999999999999986 67875432211 1111111
Q ss_pred --CCCCCe-eeeEeecccc-------c------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 351 --PVPGTT-LGIVRVEGVL-------P------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~l-------~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.++..| .+.+.+.... . ....+++..|+.. .++.+..||+||+||+.++++| .|+.+.||
T Consensus 87 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLD 166 (500)
T TIGR02633 87 LTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILD 166 (500)
T ss_pred cccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 112212 1222111000 0 0123455566642 2466889999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 167 EPt 169 (500)
T TIGR02633 167 EPS 169 (500)
T ss_pred CCC
Confidence 985
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=101.33 Aligned_cols=119 Identities=19% Similarity=0.232 Sum_probs=75.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-c---c----------------ccccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-N---I----------------VSHLTEA-- 350 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~---~----------------v~~~t~s-- 350 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+.... . . +..+...
T Consensus 22 ~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 22 PVLKNV-SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred EEEecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 577777 77777888777 999999999999999999999999754321 0 1 1111111
Q ss_pred CCCCCe-eeeEeeccc---cc------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+..| .+.+..... .. ....+++..|+.. .++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 011111 111111000 00 0112445556642 2567889999999999999999 57888888874
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.1e-10 Score=108.63 Aligned_cols=129 Identities=19% Similarity=0.150 Sum_probs=82.1
Q ss_pred eEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC---CCCccccc------------ccc
Q 015085 284 VSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGDGEEKN------------IVS 345 (413)
Q Consensus 284 vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~---G~~~~~~~------------~v~ 345 (413)
.+....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.. |.+..... .+.
T Consensus 9 ~~l~~~~~~~~~~~l~~v-~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig 87 (282)
T PRK13640 9 KHVSFTYPDSKKPALNDI-SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVG 87 (282)
T ss_pred EEEEEEcCCCCccceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheE
Confidence 344445532 3477777 77777888766 99999999999999999999887 55432211 112
Q ss_pred cccccC---C-CCCeeeeEeeccccc---c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEAP---V-PGTTLGIVRVEGVLP---A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s~---~-pgtT~~~i~~~~~l~---~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+...+ + ..|..+.+.+..... . ...+++..|+. ..++....||+||+||+.++++| .|+.+.+
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222211 1 223333332210000 0 12345555665 34677899999999999999999 7888888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (282)
T PRK13640 168 DEST 171 (282)
T ss_pred ECCc
Confidence 8874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-10 Score=109.63 Aligned_cols=131 Identities=19% Similarity=0.195 Sum_probs=81.2
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v----------- 344 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 41 ~i~~l~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~ 119 (285)
T PRK14254 41 EARDLNVFYGDEQALDDV-SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALR 119 (285)
T ss_pred EEEEEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhh
Confidence 334444556555678888 77777888776 99999999999999999986 5778654322111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---cc-----cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LP-----AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~-----~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++++..+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|
T Consensus 120 ~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p 199 (285)
T PRK14254 120 RRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDP 199 (285)
T ss_pred ccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111111 112222222211100 00 001234444542 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 200 ~lLLLDEPt 208 (285)
T PRK14254 200 EVILMDEPA 208 (285)
T ss_pred CEEEEeCCC
Confidence 999999885
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-10 Score=121.25 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc--------------------------cccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN--------------------------IVSH 346 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~--------------------------~v~~ 346 (413)
.+++.| ++....|++++ +|+||+|||||+++|+|++.+.+|.+..... .+..
T Consensus 30 ~~l~~i-s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 30 AAVRNL-SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eEEEee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 578888 78778888777 9999999999999999999998886532110 1111
Q ss_pred ccccC----CCCCe-eeeEeecccc----c------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 347 LTEAP----VPGTT-LGIVRVEGVL----P------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 347 ~t~s~----~pgtT-~~~i~~~~~l----~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
+...+ .|..| .+.+.+.... . ....+++..|+.. .++.+..||+||+||+++|++| .|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 11111 12212 1222111000 0 0123456667742 3678899999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 189 lLllDEPt 196 (623)
T PRK10261 189 VLIADEPT 196 (623)
T ss_pred EEEEeCCC
Confidence 99999884
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-10 Score=120.71 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=77.8
Q ss_pred eecCcc-hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-----------cccccccc--------
Q 015085 288 KNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSH-------- 346 (413)
Q Consensus 288 ~~~Gi~-~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-----------~~~~~v~~-------- 346 (413)
+.||.. ..+..+ . ...+|++++ +|+||+|||||+++|+|.+.|+.|.+. .....+..
T Consensus 81 ~~yg~~~~~L~~l-~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 81 HRYGVNGFKLYGL-P-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred EEecCCceeEecC-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 455543 356666 3 456777766 999999999999999999999999864 11111100
Q ss_pred -ccccCCC-----------CCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 -LTEAPVP-----------GTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 -~t~s~~p-----------gtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
......+ ++..+.+...........+++..|+. ..++.+..||+||+||+++++++ .|+.|.||+
T Consensus 159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE 238 (590)
T PRK13409 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238 (590)
T ss_pred CcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 0000001 11111111000000112455666775 35788999999999999999999 689999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 239 Pt 240 (590)
T PRK13409 239 PT 240 (590)
T ss_pred CC
Confidence 84
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-10 Score=102.96 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=74.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|...+.+|.+......+ ..+... .++++..+
T Consensus 18 ~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 18 PVLKNI-SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred ccccce-EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 577777 77778888777 999999999999999999999999754322111 111111 11223333
Q ss_pred eEeeccccc--ccccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP--AQAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~--~~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+....... .....++..|+ . ..++....||+||+|++.++++| .|+.+.||+|+
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~ 167 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEAT 167 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 222110000 00111111222 1 11356789999999999999999 68888888874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-10 Score=118.30 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=86.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC---C-CCC
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP---V-PGT 355 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~---~-pgt 355 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+.... ..+..+.... + +..
T Consensus 321 ~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 321 EVENLTKGFDNGPLFKNL-NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEEeeEEeeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 344445566656678888 78788888766 999999999999999999999999764322 1222222221 1 112
Q ss_pred e-eeeEeeccc--ccc--ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGV--LPA--QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~--l~~--~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+..... ... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 2 222211000 000 12345556663 34688999999999999999999 68899999885
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=102.36 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=79.6
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCCC
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPGT 355 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pgt 355 (413)
.|+...+++.+ ++....|++++ +|+||+|||||+++|+|.+++.+|.+...... +..+... .+++.
T Consensus 9 ~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (237)
T TIGR00968 9 RFGSFQALDDV-NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHL 87 (237)
T ss_pred EECCeeeeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCC
Confidence 44445678877 77778888777 99999999999999999999998875322111 1111111 12332
Q ss_pred e-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+.... . ....+++..|+. ..++....||+||+|++++++++ .|+.+.+|+|.
T Consensus 88 t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 88 TVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred cHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2 2222211000 0 012345555654 24577889999999999999999 57888888874
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=108.37 Aligned_cols=120 Identities=15% Similarity=0.213 Sum_probs=76.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccc----------------cccccccC-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNI----------------VSHLTEAP- 351 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~----------------v~~~t~s~- 351 (413)
..+++.+ ++...+|+++. +|+||+|||||+++|+|++.+. +|.+...... +..+...+
T Consensus 29 ~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 29 VTAVNDL-NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEEeee-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 4567777 78778888777 9999999999999999999885 7765422211 22222211
Q ss_pred ---CCCCeeee-Eeecc----ccc------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 352 ---VPGTTLGI-VRVEG----VLP------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 352 ---~pgtT~~~-i~~~~----~l~------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.|..|... +.... ... ....+++..|+.. .++..+.|||||+||+++|++| .|+.+.+|+
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE 187 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE 187 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 12222211 10000 000 0123455556542 2568899999999999999999 688888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 188 Pt 189 (330)
T PRK09473 188 PT 189 (330)
T ss_pred CC
Confidence 74
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-09 Score=101.87 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=75.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC----CCCCCccccccc----------ccccccC---C-C
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDGEEKNIV----------SHLTEAP---V-P 353 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~----~~G~~~~~~~~v----------~~~t~s~---~-p 353 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+......+ ..+.... + +
T Consensus 16 ~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 16 QPLVHGV-SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred cceecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 3567777 77778888776 999999999999999999988 888654322111 1111110 0 0
Q ss_pred CCee-eeEeec---cccc----ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVE---GVLP----AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~---~~l~----~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|. +.+... .... ....+++..|+.. .++....||+||+|++.++++| .|+.+.||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0110 000000 0000 0122445556543 2567889999999999999999 68888888874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.1e-10 Score=118.96 Aligned_cols=132 Identities=17% Similarity=0.266 Sum_probs=85.4
Q ss_pred eEEEeEEEeecCcc--hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------ccc
Q 015085 280 KLHFVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIV 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~--~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v 344 (413)
+|.+-...-.|+.+ .+++.+ ++..+.|+.+. +|.||||||||+|.|+|++.|..|.+.-+. ..+
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~i-sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDL-SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhce-eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 45665566666655 678888 77777776555 999999999999999999999999865332 223
Q ss_pred ccccccC--CCCCeeeeEeeccccccc---c----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPAQ---A----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~~---~----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.. +.|+.++.+......... . .+...| |+. .-...-..|||||+||+++||++ +|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 3333322 355666555432111100 0 111122 221 11233466999999999999999 788
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
...||++
T Consensus 630 ILlLDEa 636 (709)
T COG2274 630 ILLLDEA 636 (709)
T ss_pred EEEEeCc
Confidence 8988886
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-09 Score=108.16 Aligned_cols=119 Identities=22% Similarity=0.247 Sum_probs=78.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~----~p 353 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++.+.+|.+...... +..+.+.+ .|
T Consensus 35 ~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 35 KAVDGV-TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred EEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 467777 77778888776 99999999999999999999999975432211 22222221 22
Q ss_pred CCe-eeeEeecc-----cccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTT-LGIVRVEG-----VLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT-~~~i~~~~-----~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..| .+.+.... .+.. ...+++..|+. ..++....|||||+||+++|++| .|+.+.+|+|.
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPt 189 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPV 189 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222 22221100 0110 12345666763 24688899999999999999999 68888888874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.9e-10 Score=114.42 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=78.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc-------------------CCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA-------------------PVP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s-------------------~~p 353 (413)
..++.+ ++...+|+++. ||.+|||||||.++|+|+.+|..|.+......+ .++.+ -.|
T Consensus 305 ~Av~~V-Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 305 KAVDDV-SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeee-eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccccchhhhhhhheEEEEeCcccccCc
Confidence 456666 67777888777 999999999999999999999888755333221 11111 112
Q ss_pred CCee-eeEeeccccc----------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVEGVLP----------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~~~l~----------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|+ +.+..+.... ...++++..|+.. .++++++|||||+||++|||+| .|+...+|+|.
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~ 457 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPV 457 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCc
Confidence 1111 1111100000 0135677888864 5799999999999999999999 67777777763
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-10 Score=120.62 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-cccccccc---CCCC-Ce
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEA---PVPG-TT 356 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-~v~~~t~s---~~pg-tT 356 (413)
+.+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.|++|.+..... .+.++... -.+. |.
T Consensus 322 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 322 MENVNYQIDGKQLVKDF-SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTV 400 (635)
T ss_pred EeeeEEEECCeEEEcCc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCH
Confidence 34455667666788888 77778887665 9999999999999999999999997653211 12222221 1122 22
Q ss_pred eeeEeeccc-c--c----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 357 LGIVRVEGV-L--P----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~-l--~----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... . . ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|.
T Consensus 401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 232221100 0 0 012334455553 24677899999999999999999 58899999884
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=98.95 E-value=9e-10 Score=103.85 Aligned_cols=120 Identities=17% Similarity=0.189 Sum_probs=73.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------ccccc--cCCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTE--APVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~--s~~pgtT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+.. .-+++|..
T Consensus 14 ~~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 14 RPVLKDV-SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred Cceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 4467777 77777888776 999999999999999999999999754322111 11111 11233333
Q ss_pred eeEeecccc-c-cc-ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVL-P-AQ-AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l-~-~~-~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.... . .. ....+.. |+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~ 165 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEAT 165 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 333221000 0 00 0001111 221 12344678999999999999999 68888888885
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.5e-10 Score=119.04 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=78.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccc-----------------------
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEK----------------------- 341 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~----------------------- 341 (413)
..|+...+++.+ ++....|++++ +|+||+|||||+++|+|+. .|++|.+....
T Consensus 8 ~~~~~~~~l~~i-s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g 86 (520)
T TIGR03269 8 KKFDGKEVLKNI-SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCG 86 (520)
T ss_pred EEECCeEeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccc
Confidence 445555678888 77778888766 9999999999999999996 68888653210
Q ss_pred c----------------------cccccccc---CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCC
Q 015085 342 N----------------------IVSHLTEA---PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQIT 385 (413)
Q Consensus 342 ~----------------------~v~~~t~s---~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~ 385 (413)
. .+..+... .++..| .+.+.+... .. ....+++..|+. ..++.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 166 (520)
T TIGR03269 87 GTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166 (520)
T ss_pred ccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCc
Confidence 0 00000010 011111 111111000 00 011245555664 236778
Q ss_pred CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 386 TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..||+||+||+++|++| .|+.+.||+|+
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt 196 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPT 196 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCc
Confidence 99999999999999999 68899999985
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-10 Score=108.29 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=79.2
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 42 ~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~ 120 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKV-NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120 (286)
T ss_pred EeeeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence 33444555545677777 77778888776 99999999999999999854 3778644222111
Q ss_pred --cccccc--CCCCCeeeeEeeccc---ccc-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV---LPA-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~---l~~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++++..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .
T Consensus 121 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 200 (286)
T PRK14275 121 KIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVE 200 (286)
T ss_pred cEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111111 112222222221100 000 01233344442 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 201 p~lllLDEPt 210 (286)
T PRK14275 201 PEILLLDEPT 210 (286)
T ss_pred CCEEEEeCCC
Confidence 8999999885
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=108.77 Aligned_cols=122 Identities=20% Similarity=0.250 Sum_probs=77.5
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc----CCCCCCccccc----------------ccccccc
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD----AGRGGDGEEKN----------------IVSHLTE 349 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~----~~~G~~~~~~~----------------~v~~~t~ 349 (413)
|...+++.+ ++...+|++++ +|+||+|||||+++|+|+.+ +++|.+..... .+..+.+
T Consensus 18 ~~~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 18 GWVKAVDRV-SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCEEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 334577787 78788888777 99999999999999999986 46675432211 1222222
Q ss_pred cC----CCCCee-eeEeec-------ccc--------cccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 AP----VPGTTL-GIVRVE-------GVL--------PAQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 s~----~pgtT~-~~i~~~-------~~l--------~~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+ .|..|+ +.+... ..+ .....+++..|+.. .++....||+||+||++++++| .
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 21 122221 111000 000 01124556667752 2578899999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 177 P~llilDEPt 186 (330)
T PRK15093 177 PRLLIADEPT 186 (330)
T ss_pred CCEEEEeCCC
Confidence 8889988874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=103.07 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=73.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~ 357 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+...... +..+... .++.|..
T Consensus 15 ~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (237)
T cd03252 15 PVILDNI-SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIR 93 (237)
T ss_pred ccceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHH
Confidence 4577777 77777888777 99999999999999999999999975432211 1111111 1122222
Q ss_pred eeEeeccc-ccc-c-c---------cccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LPA-Q-A---------KLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~~-~-~---------~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... . . .+++.. |+. ..++....||+||+|++.+++++ .|+.+.||+|+
T Consensus 94 ~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~ 166 (237)
T cd03252 94 DNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEAT 166 (237)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 32222100 000 0 0 011111 221 12356789999999999999999 68889998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-10 Score=105.58 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=79.4
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc--------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI-------------- 343 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~-------------- 343 (413)
.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+. .|.+......
T Consensus 8 ~~l~~~~~~~~il~~~-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~ 86 (251)
T PRK14249 8 RGVNFFYHKHQVLKNI-NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKR 86 (251)
T ss_pred EEEEEEECCeeEecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhce
Confidence 3444455545577777 77777888777 9999999999999999999886 4654322111
Q ss_pred ccccccc--CCCCCeeeeEeeccccc----c------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEA--PVPGTTLGIVRVEGVLP----A------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s--~~pgtT~~~i~~~~~l~----~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+... .++.+..+.+.+..... . ...+++..|+. ..++....||+||+||+.+++++ .|
T Consensus 87 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 166 (251)
T PRK14249 87 VGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEP 166 (251)
T ss_pred EEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 12333333332210000 0 00122233432 23577889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 167 ~lllLDEPt 175 (251)
T PRK14249 167 EVILMDEPC 175 (251)
T ss_pred CEEEEeCCC
Confidence 999999885
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-10 Score=115.87 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=80.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-----CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-----PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-----~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+... .+++
T Consensus 277 ~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDI-SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred Ccccce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 367777 77778888776 99999999999999999999999986532211 1222221 1222
Q ss_pred -CeeeeEeeccc------------ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 355 -TTLGIVRVEGV------------LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 355 -tT~~~i~~~~~------------l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
|..+.+.+... ... ...+++..|+. ..++.+..||+||+||+.++++| .|+.+.||+
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 22222221100 000 12455666774 35788899999999999999999 589999999
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|+
T Consensus 436 Pt 437 (510)
T PRK09700 436 PT 437 (510)
T ss_pred CC
Confidence 85
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=112.48 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=81.2
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-ccccccccc--CCCCCe-eeeE
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEA--PVPGTT-LGIV 360 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s--~~pgtT-~~~i 360 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++++|.+.... ..+..+... .++..| .+.+
T Consensus 7 ls~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l 85 (530)
T PRK15064 7 ITMQFGAKPLFENI-SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTV 85 (530)
T ss_pred EEEEeCCcEeEeCC-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHH
Confidence 33455555688888 78888888766 999999999999999999999999754321 112221111 111111 1111
Q ss_pred eecc----------------------------------------cc-cccccccccccccC--CCCCCCCCCHHHHHHHH
Q 015085 361 RVEG----------------------------------------VL-PAQAKLFDTPGLLH--PNQITTRLTREEQKLVN 397 (413)
Q Consensus 361 ~~~~----------------------------------------~l-~~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~ 397 (413)
.+.. .. .....+++..|+.. .++....||+||+||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~ 165 (530)
T PRK15064 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVL 165 (530)
T ss_pred HHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHH
Confidence 1000 00 00113455556642 24567899999999999
Q ss_pred Hhhhh--cCCccccCCCC
Q 015085 398 INKEL--KPRTYRIKVSL 413 (413)
Q Consensus 398 i~r~l--~~~~~~l~~~~ 413 (413)
++++| .|+.+.||+|+
T Consensus 166 lA~aL~~~p~lLlLDEPt 183 (530)
T PRK15064 166 LAQALFSNPDILLLDEPT 183 (530)
T ss_pred HHHHHhcCCCEEEEcCCC
Confidence 99999 57889999885
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.8e-10 Score=103.78 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=73.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCeee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~~ 358 (413)
.+++.+ ++....|+++. +|+||+|||||+++|+|+.++.+|.+...... +..+... .++.|..+
T Consensus 17 ~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 17 PILKGL-SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred cceece-EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 467777 77777888777 99999999999999999999999975432211 1111111 01222233
Q ss_pred eEeeccccc--cc-ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGVLP--AQ-AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~--~~-~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+..... .. ....+.. |+. ..++....||+||+||+.+++++ .|+.+.||+|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 167 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEAT 167 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 322210000 00 0001111 222 12355688999999999999999 58899999885
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-09 Score=104.06 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=76.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------cccccc---CCC-CCee
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------SHLTEA---PVP-GTTL 357 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~~~t~s---~~p-gtT~ 357 (413)
+++.+ ++...+|+++. +|+||+|||||+++|+|.+++.+|.+......+ ..+... .++ .+..
T Consensus 22 ~l~~v-~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 22 QLNGV-SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 77777 77777888777 999999999999999999999999754322111 111111 112 1222
Q ss_pred eeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... ... ...+++..|+. ..++.+..||+||+|++.++++| .|+.+.+|+|+
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDEST 168 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 22221100 000 01234444553 34567889999999999999999 68888888874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=107.53 Aligned_cols=119 Identities=19% Similarity=0.278 Sum_probs=77.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~----~p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|++.+.+|.+......+ ..+...+ .|
T Consensus 29 ~~l~~v-sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 29 KALDGV-SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 567777 77778888777 999999999999999999999988754322211 1111111 12
Q ss_pred CCeee-eEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLG-IVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~-~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|+. .+.... ... ....+++..|+. ..++....|||||+||++++++| .|+.+.+|+|.
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPt 182 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPV 182 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 12211 110000 000 012456666664 24688999999999999999999 68888888874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-10 Score=119.07 Aligned_cols=131 Identities=16% Similarity=0.208 Sum_probs=84.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccCC----CC-
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPV----PG- 354 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~~----pg- 354 (413)
.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|...|++|.+.... ..+.++..... +.
T Consensus 314 ~~~~l~~~y~~~~il~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 314 KMEKVSAGYGDRIILDSI-KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEEeeEEEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 334455667666788888 77778887766 999999999999999999999999765321 11222222110 11
Q ss_pred CeeeeEeecc-cc--ccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEG-VL--PAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~-~l--~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+.+.... .. .....+++..|+. ..++.+..|||||+||+++++++ .|+.+.||+|.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt 458 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPT 458 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111110000 00 0012345555663 24678899999999999999999 68999999884
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-09 Score=101.02 Aligned_cols=118 Identities=21% Similarity=0.266 Sum_probs=76.0
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCCC-CeeeeE
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVPG-TTLGIV 360 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~pg-tT~~~i 360 (413)
+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|++...... +..+... .++. +..+.+
T Consensus 14 ~l~~i-s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNV-SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 57777 77777787766 99999999999999999999999975422211 1111111 1222 222222
Q ss_pred eeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+..... ....+++..|+. ..++....||+||+||+++++++ .|+.+.+|+|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 2110000 002345555664 24677889999999999999999 67888888874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-09 Score=101.42 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~------------ 343 (413)
.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|++. + ++|.+......
T Consensus 6 ~~~nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 84 (252)
T PRK14256 6 KLEQLNVHFGKNHAVKDV-SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84 (252)
T ss_pred EEEEEEEEeCCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhh
Confidence 334444556555678888 77778888777 99999999999999999985 3 46754322111
Q ss_pred --ccccccc--CCCCCe-eeeEeeccc----ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 --VSHLTEA--PVPGTT-LGIVRVEGV----LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT-~~~i~~~~~----l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++..| .+.+.+... ... ...+++..|+. ..++....||+||+||+++++++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 164 (252)
T PRK14256 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA 164 (252)
T ss_pred ccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence 1111111 122222 222221100 000 11334455552 13466889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 165 ~~p~llllDEP~ 176 (252)
T PRK14256 165 VKPEVILMDEPA 176 (252)
T ss_pred cCCCEEEEcCCc
Confidence 68889998885
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-10 Score=106.15 Aligned_cols=127 Identities=18% Similarity=0.256 Sum_probs=79.4
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC---CCCcccccc-----------------c
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGDGEEKNI-----------------V 344 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~---G~~~~~~~~-----------------v 344 (413)
....++...+++.+ ++...+|++++ +|+||+|||||+++|+|...|.. |.+...... +
T Consensus 10 l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i 88 (262)
T PRK09984 10 LAKTFNQHQALHAV-DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88 (262)
T ss_pred EEEEeCCeEEEecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhhe
Confidence 33445555678888 77777888777 99999999999999999998764 543322111 1
Q ss_pred cccccc--CCCCCe-eeeEeeccc------------cc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEGV------------LP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~~------------l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
..+... .+++.| .+.+.+... .. ....+++..|+. ..++....||+||+||+++++++
T Consensus 89 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 168 (262)
T PRK09984 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM 168 (262)
T ss_pred EEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh
Confidence 111111 123222 222211000 00 012244445654 34677889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 169 ~~p~llllDEPt 180 (262)
T PRK09984 169 QQAKVILADEPI 180 (262)
T ss_pred cCCCEEEecCcc
Confidence 78899999884
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=103.97 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=81.6
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~------------ 343 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..| .+|.+......
T Consensus 23 ~i~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 101 (276)
T PRK14271 23 AAVNLTLGFAGKTVLDQV-SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRR 101 (276)
T ss_pred EEeeEEEEECCEEEeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhh
Confidence 344455566666778888 77777888776 999999999999999999875 56764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccc----cc-c-----ccccccccccC-----CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVL----PA-Q-----AKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l----~~-~-----~~liDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+.... .. . ..+++..|+.. .++....||+||+||+.++++| .
T Consensus 102 ~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 102 RVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred heEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 1233333332211000 00 0 12233344431 2466788999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 182 p~lllLDEPt 191 (276)
T PRK14271 182 PEVLLLDEPT 191 (276)
T ss_pred CCEEEEcCCc
Confidence 8899999885
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7e-10 Score=106.88 Aligned_cols=120 Identities=19% Similarity=0.280 Sum_probs=78.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------ccccccC---C-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------SHLTEAP---V- 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------~~~t~s~---~- 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+..+.+|.+......+ ..+.... +
T Consensus 25 ~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (268)
T PRK10419 25 QTVLNNV-SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN 103 (268)
T ss_pred eeeEece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence 4577777 77777888777 999999999999999999999999754322211 1111110 1
Q ss_pred CCCe-eeeEeecc----ccc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG----VLP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~----~l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..| .+.+.+.. ... ....+++..|+. ..++....||+||+||+.++++| .|+.+.||+|+
T Consensus 104 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt 179 (268)
T PRK10419 104 PRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAV 179 (268)
T ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111 11111000 000 112355555663 24677889999999999999999 78899999885
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.6e-10 Score=107.46 Aligned_cols=131 Identities=16% Similarity=0.228 Sum_probs=80.4
Q ss_pred EEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....| +...+++.+ ++...+|++++ +|+||+|||||+++|+|++. .+|.+...... +.
T Consensus 3 i~~~nls~~~~~~~~~~l~~i-sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred EEEEEEEEEeCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 3344444555 444578888 78888888766 99999999999999999997 67865432211 11
Q ss_pred ccccc--CCCCCeeeeEeeccccc--cccccccccccc-CCCCCCC-----------CCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLP--AQAKLFDTPGLL-HPNQITT-----------RLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~--~~~~liDtpGl~-~~~~~~~-----------~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... -+++|.++.+....... .....++..|+. ..++... .||+|++|++.++|+| .|+.+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred EECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 12444444442111011 011233444543 1223333 4999999999999999 78888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 161 llDEpt 166 (275)
T cd03289 161 LLDEPS 166 (275)
T ss_pred EEECcc
Confidence 888874
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-10 Score=107.58 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=73.1
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc--cccCCCCCe-eeeEeecc---ccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL--TEAPVPGTT-LGIVRVEG---VLP 367 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~--t~s~~pgtT-~~~i~~~~---~l~ 367 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+..... +... .....+..| .+.+.... ...
T Consensus 39 il~~i-s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 39 ALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-VSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred EEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-EeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 45555 66667787766 9999999999999999999999997543221 1000 000111112 22221100 000
Q ss_pred -cc-----cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 -AQ-----AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 -~~-----~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ..+++..|+. ..++....||+||+|++++++++ .|+.+.||+|+
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt 171 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 00 1234445554 23567889999999999999999 58999999885
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-10 Score=117.90 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=75.6
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCC-CeeeeEeecc-ccc---
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPG-TTLGIVRVEG-VLP--- 367 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pg-tT~~~i~~~~-~l~--- 367 (413)
++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+... ..+..+... ..+. |..+.+.... ...
T Consensus 355 l~~~-s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 355 LEVE-GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEec-ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 4444 55667788776 99999999999999999999999975432 111111111 1122 2222222100 000
Q ss_pred cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 012345556664 34788999999999999999999 78899999884
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-09 Score=101.84 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=76.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIV-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v-------------- 344 (413)
+....|+...+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+. +|.+......+
T Consensus 9 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 87 (252)
T PRK14272 9 DVNIYYGDKQAVKNV-NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRV 87 (252)
T ss_pred eeEEEECCEEeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhcee
Confidence 334455545678888 77778888776 9999999999999999998764 57543222111
Q ss_pred cccccc--CCCC-CeeeeEeeccccc---cc-------ccccccccc----c-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPG-TTLGIVRVEGVLP---AQ-------AKLFDTPGL----L-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pg-tT~~~i~~~~~l~---~~-------~~liDtpGl----~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .+++ +..+.+....... .. ..++...++ . ..++....||+||+||+++++++ .|
T Consensus 88 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14272 88 GMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEP 167 (252)
T ss_pred EEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 111111 1122 2122221100000 00 001111221 1 23566889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 168 ~llllDEP~ 176 (252)
T PRK14272 168 EILLMDEPT 176 (252)
T ss_pred CEEEEeCCC
Confidence 889999885
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-09 Score=104.71 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=82.1
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------------ccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------------NIV 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------------~~v 344 (413)
-+..+.+|...+++.+ ++...+|++++ +|+||+|||||+++|+|...+.+|.+.... ..+
T Consensus 14 ~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i 92 (257)
T PRK14246 14 SRLYLYINDKAILKDI-TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV 92 (257)
T ss_pred eeEEEecCCceeEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcce
Confidence 3444556666788888 77777887766 999999999999999999999887532110 011
Q ss_pred cccccc--CCCCCe-eeeEeecc----cccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEG----VLPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~----~l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .+++.| .+.+.+.. .... ...+++..|+. ..++....||+||+||+++++++ .|
T Consensus 93 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 93 GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred EEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 111111 123423 23222110 0000 01344555653 23567789999999999999999 67
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 173 ~llllDEPt 181 (257)
T PRK14246 173 KVLLMDEPT 181 (257)
T ss_pred CEEEEcCCC
Confidence 888888875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.3e-10 Score=105.20 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=79.1
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc--------------cccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI--------------VSHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~--------------v~~~ 347 (413)
..|+...+++.+ ++...+|++++ +|+||+|||||+++|+|... +.+|++...... +..+
T Consensus 13 ~~~~~~~~l~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 91 (251)
T PRK14244 13 LWYGSKQILFDI-NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91 (251)
T ss_pred EEECCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEE
Confidence 344445677777 77778888776 99999999999999999975 357864422111 1111
Q ss_pred ccc--CCCCCeeeeEeecccccc-----------cccccccccccC-----CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 348 TEA--PVPGTTLGIVRVEGVLPA-----------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l~~-----------~~~liDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
... .++++..+.+.+.....+ ...+++..|+.. .++....||+||+|++++++++ .|+.+
T Consensus 92 ~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 171 (251)
T PRK14244 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML 171 (251)
T ss_pred ecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111 123333333221100000 013455556632 2456788999999999999999 68889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 172 llDEPt 177 (251)
T PRK14244 172 LMDEPC 177 (251)
T ss_pred EEeCCC
Confidence 998874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-09 Score=104.40 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=81.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~----------- 343 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|... + .+|.+......
T Consensus 13 l~i~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNI-NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EEEeeEEEEECCeeeEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 3344555566655678887 77778888776 99999999999999999986 3 46764322111
Q ss_pred ---ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+... .++++..+.+.+.... .. ...++...|+. ..++....||+||+||+.+++++
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 1111111 1223333332211000 00 01123334442 23567889999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.+|+|+
T Consensus 172 ~~p~llllDEPt 183 (259)
T PRK14274 172 TNPDVLLMDEPT 183 (259)
T ss_pred cCCCEEEEcCCc
Confidence 68899999885
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=105.75 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 28 ~~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~ 106 (272)
T PRK14236 28 VRNLNLFYGDKQALFDI-SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR 106 (272)
T ss_pred EEEEEEEECCeeEeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence 33444455545677777 77778888777 999999999999999999873 678643221111
Q ss_pred --cccccc--CCCCCeeeeEeeccccc---c-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVLP---A-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l~---~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .+++|..+.+.+..... . ...+++..|+. ..++....||+||+||+++++++ .
T Consensus 107 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~ 186 (272)
T PRK14236 107 RVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIE 186 (272)
T ss_pred cEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCC
Confidence 111111 12332222222110000 0 01233444542 23567789999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 187 p~lllLDEPt 196 (272)
T PRK14236 187 PEVLLLDEPT 196 (272)
T ss_pred CCEEEEeCCc
Confidence 8889999885
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=118.79 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=84.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+.+..-.|+ ...+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+... +
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDV-SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 355556666663 24578888 77777777655 99999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc--cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~--~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ ++||-++.+........ .....+..|+ .. -...-..|||||+||+++||++ +|+.
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222222 35665555543211110 0112222222 10 0122356999999999999999 7788
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 610 LiLDEpT 616 (686)
T TIGR03797 610 LLFDEAT 616 (686)
T ss_pred EEEeCCc
Confidence 8888873
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-09 Score=115.54 Aligned_cols=119 Identities=20% Similarity=0.282 Sum_probs=80.6
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------cccccccC----CC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEAP----VP 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s~----~p 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+...+ .+
T Consensus 338 ~~l~~v-s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 338 HAVEKV-SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred EEEeee-EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 477777 78778888776 99999999999999999999999986532211 12222221 22
Q ss_pred CCee-eeEeecc---cc-c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTL-GIVRVEG---VL-P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~-~~i~~~~---~l-~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..|. +.+.... .. . ....+++..|+. ..++.+..|||||+||++++++| .|+.+.+|+|.
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPt 491 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAV 491 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2221 2211100 00 0 012456667874 35788999999999999999999 68899999884
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-10 Score=104.55 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=78.1
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~------------- 343 (413)
+.+....++...+++.+ ++....|++++ +|+||+|||||+++|+|...+ ++|.+......
T Consensus 6 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14240 6 VKDLDLFYGDFQALKKI-NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK 84 (250)
T ss_pred EEEEEEEECCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc
Confidence 33444455545677777 77778888776 999999999999999998753 56764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+.....+ ...+++..|+. ..++....||+||+||+.+++++ .
T Consensus 85 ~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14240 85 RVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVE 164 (250)
T ss_pred cEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcC
Confidence 1111111 112222222221100000 01122333331 12567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 165 p~llllDEP~ 174 (250)
T PRK14240 165 PEVLLMDEPT 174 (250)
T ss_pred CCEEEEeCCC
Confidence 8899999885
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-09 Score=100.98 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=79.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 7 ~~~l~~~~~~~~~l~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14251 7 AKDVHLSYGNYEALHGI-SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRK 85 (251)
T ss_pred EEeeEEEECCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhc
Confidence 33444455555677777 77778888776 99999999999999999986 3677643221111
Q ss_pred --cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+|++++++++ .
T Consensus 86 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~ 165 (251)
T PRK14251 86 EVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVR 165 (251)
T ss_pred cEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcC
Confidence 111111 1122222222211000 00 01234444552 23567789999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|+
T Consensus 166 p~llllDEP~ 175 (251)
T PRK14251 166 PKVVLLDEPT 175 (251)
T ss_pred CCEEEecCCC
Confidence 8889898875
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-09 Score=101.49 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=81.1
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI------------ 343 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~------------ 343 (413)
.+-+....++...+++.+ ++....|++++ +|+||+|||||+++|+|++. +++|.+......
T Consensus 22 ~~~nl~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 100 (267)
T PRK14237 22 STKDLHVYYGKKEAIKGI-DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMR 100 (267)
T ss_pred EEeeEEEEECCeeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHh
Confidence 334445555556678877 77778888776 99999999999999999986 467864322111
Q ss_pred --ccccccc--CCCCCeeeeEeecccccc----------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 344 --VSHLTEA--PVPGTTLGIVRVEGVLPA----------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 344 --v~~~t~s--~~pgtT~~~i~~~~~l~~----------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
+..+... .++++..+.+.+.....+ ...+++..|+. ..++....||+||+|+++++|++
T Consensus 101 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 101 KHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred cceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 1111111 122333333322100000 01123334442 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 181 ~p~lllLDEPt 191 (267)
T PRK14237 181 KPDILLMDEPA 191 (267)
T ss_pred CCCEEEEeCCc
Confidence 68889998875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=104.09 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=77.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc--------------c
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI--------------V 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~--------------v 344 (413)
.....++...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ .+|.+...... +
T Consensus 8 ~l~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i 86 (250)
T PRK14262 8 NFSAYYGEKKAVKNV-TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKV 86 (250)
T ss_pred eeEEEeCCceeEeee-eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhE
Confidence 334445545677777 77778888776 999999999999999999873 67764422211 1
Q ss_pred cccccc--CCCCCeeeeEeecccc---c-c------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL---P-A------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l---~-~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++.+..+.+.+.... . . ...+++..|+. ..++....||+||+||+.+++++ .|+
T Consensus 87 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ 166 (250)
T PRK14262 87 GMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPE 166 (250)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCC
Confidence 111111 1122222222211000 0 0 01123334442 13567889999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|+
T Consensus 167 llllDEP~ 174 (250)
T PRK14262 167 VILLDEPT 174 (250)
T ss_pred EEEEeCCc
Confidence 88888874
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.5e-10 Score=113.20 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=79.6
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc------------cccC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL------------TEAP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~------------t~s~ 351 (413)
|.....|. .++..+ ++...+|+..+ ||+||+|||||++.|+|..+++.|++..++.....+ ...+
T Consensus 327 ~~~y~~g~-~~l~~l-~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 327 SFRYPDGK-PALSDL-NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred EEecCCCC-cccCCc-eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 33333343 677777 67777776555 999999999999999999999999876443333322 2222
Q ss_pred --CCCCeeeeEeeccccc--c-c---------ccccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 352 --VPGTTLGIVRVEGVLP--A-Q---------AKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 352 --~pgtT~~~i~~~~~l~--~-~---------~~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
++||-++++.+-.... . . ..+++.| |+.. -..--..||+||.||+++||++ .+..|.+|+|
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 3566666654421100 0 0 1223322 3321 1122345999999999999999 4568888887
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-09 Score=114.13 Aligned_cols=119 Identities=12% Similarity=0.191 Sum_probs=80.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-------------cccccc-----CCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-------------SHLTEA-----PVP- 353 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-------------~~~t~s-----~~p- 353 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.++.+|.+......+ ..+... .++
T Consensus 267 ~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPI-SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred Ccccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 467777 77778888766 999999999999999999999999865332111 111111 122
Q ss_pred CCeeeeEeeccc---------cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGV---------LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~---------l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|..+.+.+... .. ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt 424 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPT 424 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCC
Confidence 222233221100 00 012355566773 35788999999999999999999 68999999985
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-09 Score=116.68 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=76.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------ccccccccC--CCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVSHLTEAP--VPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~~~t~s~--~pgtT~ 357 (413)
..+++.+ ++..++|+.+. +|++|+|||||++.|+|++ |.+|.+.-+.. .+..+.+.+ +.||-+
T Consensus 363 ~~vL~~i-~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 363 KTLAGPL-NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred Ceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 4577877 77777777666 9999999999999999999 88997653322 222333322 356666
Q ss_pred eeEeeccc-ccc-c-ccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LPA-Q-AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~~-~-~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++.+... ..+ . ....+.. |+.. -...-..|||||+||+++||++ +|+.+.||++.
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~T 513 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPT 513 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 66554211 000 0 1111111 2221 1122356999999999999999 78889888873
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-09 Score=113.02 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=77.1
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-cccccCCCC-CeeeeEeecc---ccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-HLTEAPVPG-TTLGIVRVEG---VLP 367 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-~~t~s~~pg-tT~~~i~~~~---~l~ 367 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+........ .......+. |..+.+.+.. ...
T Consensus 38 ~IL~nV-SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 38 YALNNI-SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred eEEeee-EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 467777 77778888776 9999999999999999999999997543221100 000011122 2222221100 000
Q ss_pred c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 368 A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 368 ~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ...+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPT 171 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEAL 171 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 01245555664 34677899999999999999999 68899999885
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-09 Score=116.57 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=82.5
Q ss_pred EeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccCCCCCeeee
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPVPGTTLGI 359 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~~pgtT~~~ 359 (413)
+-.....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+.... ..+.++......+.+...
T Consensus 511 ~~~ls~~y~~~~~il~~v-sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~ 589 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589 (718)
T ss_pred EEeeEEEeCCCCeeEecc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcch
Confidence 3344556642 3477877 77777787665 999999999999999999999999765321 112222222112111100
Q ss_pred --Eeecc-ccc-----cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 360 --VRVEG-VLP-----AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 360 --i~~~~-~l~-----~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.... ... ....+++..|+. ..++....||+||+||+++++++ .|+.+.||+|.
T Consensus 590 ~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT 655 (718)
T PLN03073 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655 (718)
T ss_pred hHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00000 000 012345556664 24677899999999999999999 68889999884
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.2e-09 Score=101.02 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=77.1
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-------------cccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~-------------v~~~ 347 (413)
...++...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ ++|.+...... +..+
T Consensus 10 ~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 10 DLFYGENQALKSI-NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred EEEECCeeeeecc-eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEE
Confidence 3444545577887 77778888877 999999999999999999875 46754322111 1111
Q ss_pred ccc--CCCCCeeeeEeecccc---ccc-------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 348 TEA--PVPGTTLGIVRVEGVL---PAQ-------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l---~~~-------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
... .++.+..+.+.+.... ... ..+++..|+. ..++....||+||+||+.+++++ .|+.+.
T Consensus 89 ~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 168 (249)
T PRK14253 89 FQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVIL 168 (249)
T ss_pred ecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 111 1222333332211000 000 1123333432 23466789999999999999999 588999
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|+
T Consensus 169 lDEP~ 173 (249)
T PRK14253 169 MDEPT 173 (249)
T ss_pred EeCCC
Confidence 99885
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-10 Score=116.09 Aligned_cols=120 Identities=23% Similarity=0.318 Sum_probs=78.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-ccc------------------ccccccc--
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNI------------------VSHLTEA-- 350 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~------------------v~~~t~s-- 350 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+... ... +..+...
T Consensus 297 ~~il~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNV-SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 3577777 77778888766 99999999999999999999999976532 110 1111111
Q ss_pred CCCC-CeeeeEeeccc--ccc------cccccccccccC------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGV--LPA------QAKLFDTPGLLH------PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~--l~~------~~~liDtpGl~~------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++. |..+.+..... ... ...+++..|+.. .++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 11222211000 000 113456667742 3678899999999999999999 68889999885
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-09 Score=113.95 Aligned_cols=120 Identities=17% Similarity=0.206 Sum_probs=80.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-CCCCCCcccccc-------------ccccccc-----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNI-------------VSHLTEA-----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~-------------v~~~t~s-----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+ +++|.+...... +..+... .+
T Consensus 275 ~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDV-SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccce-eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 3577777 78888888776 99999999999999999998 488875532211 1122221 11
Q ss_pred CCCe-eeeEeecc--cc------c------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PGTT-LGIVRVEG--VL------P------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pgtT-~~~i~~~~--~l------~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
++.| .+.+.+.. .+ . ....+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 2222 22222110 00 0 012456666774 35788899999999999999999 68999999985
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-09 Score=102.25 Aligned_cols=121 Identities=23% Similarity=0.357 Sum_probs=76.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCccccc---------cccccccc--CCCC-C
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKN---------IVSHLTEA--PVPG-T 355 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~---------~v~~~t~s--~~pg-t 355 (413)
...+++.+ ++....|++++ +|+||+|||||+++|+|.++ +.+|.+..... .+..+... .+++ |
T Consensus 19 ~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 19 YARILNDV-SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred ccccccCc-eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 34577777 77777888776 99999999999999999998 88886432211 11111111 1233 2
Q ss_pred eeeeEeeccc--c----c------cccc-cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--L----P------AQAK-LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--l----~------~~~~-liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... . . .... +++..|+. ..++....||+||+||+++++++ .|+.+.+|+|+
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~ 171 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT 171 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 2222221000 0 0 0011 44444543 23567889999999999999999 57889998874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-09 Score=102.81 Aligned_cols=130 Identities=16% Similarity=0.171 Sum_probs=79.3
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc---CcC--CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS---VDA--GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~---~~~--~~G~~~~~~~~------------- 343 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+ .++ .+|.+......
T Consensus 6 ~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14245 6 ARDVNFWYGDFHALKGI-SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK 84 (250)
T ss_pred EEEEEEEECCEeEEeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence 34444556555677777 77777888776 999999999999999986 343 36764322111
Q ss_pred -ccccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .+++|..+.+.+.... .. ...+++..|+. ..++....||+||+||+++++++ .
T Consensus 85 ~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (250)
T PRK14245 85 NVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVS 164 (250)
T ss_pred heEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 1122222222211000 00 01334445552 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 165 p~lllLDEPt 174 (250)
T PRK14245 165 PSVLLMDEPA 174 (250)
T ss_pred CCEEEEeCCC
Confidence 8899999885
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-09 Score=104.87 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=81.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~----------- 343 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ ++|.+......
T Consensus 17 l~~~~l~~~~~~~~vl~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 17 SEVNKLNFYYGGYQALKNI-NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEEEEECCeeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 4455566666655688888 77778888777 999999999999999999874 56754321111
Q ss_pred -----ccccccc--CCCCCeeeeEeeccccc----------cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -----VSHLTEA--PVPGTTLGIVRVEGVLP----------AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -----v~~~t~s--~~pgtT~~~i~~~~~l~----------~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+... .++++..+.+.+..... ....+++..|+. ..++....||+||+||+.++|+
T Consensus 96 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 175 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARA 175 (265)
T ss_pred HHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHH
Confidence 1111111 12232222222110000 001233334432 2346678999999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
+ .|+.+.||+|+
T Consensus 176 l~~~p~llllDEPt 189 (265)
T PRK14252 176 LATDPEILLFDEPT 189 (265)
T ss_pred HHcCCCEEEEeCCC
Confidence 9 68999999885
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-09 Score=118.95 Aligned_cols=132 Identities=17% Similarity=0.236 Sum_probs=83.3
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------cccc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIVS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v~ 345 (413)
+.+.+..-.|+. ..+++.+ ++..++|+.+. +|++|+|||||+++|+|++.|.+|.+..++ ..+.
T Consensus 478 I~~~~vsf~y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 478 VELRNITFGYSPLEPPLIENF-SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred EEEEEEEEecCCCCCCcccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 445555555543 4578888 77777776555 999999999999999999999999865332 2223
Q ss_pred cccccC--CCCCeeeeEeeccc-ccc-c-c---------cccc-cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV-LPA-Q-A---------KLFD-TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~-l~~-~-~---------~liD-tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+.+ +.||-++.+..... ... . . .+++ .| |+.. -...-..|||||+||+++||++ +|+.
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 333222 35666666543110 000 0 0 1111 12 2221 1122356999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 637 liLDEpt 643 (710)
T TIGR03796 637 LILDEAT 643 (710)
T ss_pred EEEECcc
Confidence 9998874
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-09 Score=100.88 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------c
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~ 345 (413)
+.+-.....|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|+.++.+|.+......+ .
T Consensus 20 i~~~~l~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~ 98 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence 444444555553 3578888 78778888776 999999999999999999999999754322111 1
Q ss_pred ccccc--CCCCCeeeeEeecccccc--cccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+... .+++|..+.+........ ....++.. |+. ..+.....||+||+|++++++++ .|+.+
T Consensus 99 ~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 99 IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred EECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 11111 122322222211000000 00111111 222 12234578999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|+
T Consensus 179 llDEPt 184 (257)
T cd03288 179 IMDEAT 184 (257)
T ss_pred EEeCCc
Confidence 888874
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-09 Score=99.36 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=78.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCcccccc-------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNI------------- 343 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~------------- 343 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+.. | .+|.+......
T Consensus 8 ~~~l~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 86 (252)
T PRK14239 8 VSDLSVYYNKKKALNSV-SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK 86 (252)
T ss_pred EEeeEEEECCeeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh
Confidence 34444555555677777 77777888766 99999999999999999853 5 36764422211
Q ss_pred -ccccccc--CCCCCeeeeEeeccc---cc-cc------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 -VSHLTEA--PVPGTTLGIVRVEGV---LP-AQ------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 -v~~~t~s--~~pgtT~~~i~~~~~---l~-~~------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+... .++.+..+.+.+... .. .. ..+++..|+. ..++....||+||+||+.+++++ .
T Consensus 87 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (252)
T PRK14239 87 EIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATS 166 (252)
T ss_pred cEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcC
Confidence 1111111 112233333221100 00 00 1123334431 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 167 p~llllDEPt 176 (252)
T PRK14239 167 PKIILLDEPT 176 (252)
T ss_pred CCEEEEcCCc
Confidence 8999999885
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-09 Score=111.89 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=77.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCcccccc----------------ccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNI----------------VSHLTEA 350 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~----------------v~~~t~s 350 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|.+++ ++|.+...... +..+.+.
T Consensus 22 ~~~l~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDV-SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeece-EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 3578888 77778888776 999999999999999999986 57865322111 1111111
Q ss_pred C----CCCCeee-eEeecc----cccc------cccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 351 P----VPGTTLG-IVRVEG----VLPA------QAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 351 ~----~pgtT~~-~i~~~~----~l~~------~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
. .+..|.. .+.... .... ...+++..|+.. .++.+..||+||+||+++|++| .|+.+.|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll 180 (529)
T PRK15134 101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180 (529)
T ss_pred chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1111211 010000 0000 123455567642 3678899999999999999999 6899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 181 DEPt 184 (529)
T PRK15134 181 DEPT 184 (529)
T ss_pred cCCC
Confidence 9985
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-09 Score=103.28 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=78.6
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|+++. +|+||+|||||+++|+|+.. +++|.+......+
T Consensus 13 i~~v~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 91 (264)
T PRK14243 13 TENLNVYYGSFLAVKNV-WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR 91 (264)
T ss_pred EeeeEEEECCEEEeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence 34445556655678887 77777888776 99999999999999999875 3567644222111
Q ss_pred --cccccc--CCCCCeeeeEeeccccc---c-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGVLP---A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~l~---~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++.+..+.+.+..... . ...+++..|+. ..++....||+||+||+.++|++ .|+
T Consensus 92 ~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 171 (264)
T PRK14243 92 RIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPE 171 (264)
T ss_pred hEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 111111 11222222221110000 0 01123333431 23567788999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 172 lllLDEPt 179 (264)
T PRK14243 172 VILMDEPC 179 (264)
T ss_pred EEEEeCCC
Confidence 99999884
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-09 Score=101.55 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=78.5
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v----------- 344 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 22 ~~~nl~~~~~~~~~l~~v-s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~ 100 (274)
T PRK14265 22 EVEGVKVFYGGFLALVDV-HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100 (274)
T ss_pred EEeeEEEEeCCeEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHh
Confidence 334455566655678887 77778888776 999999999999999999753 467543221111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---ccc-----ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LPA-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~~-----~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.+..+.+.+... ... ...+++..|+. ..++....||+||+||+.++++| .|
T Consensus 101 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p 180 (274)
T PRK14265 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKP 180 (274)
T ss_pred hcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCC
Confidence 111111 112222222211000 000 01122233331 23567788999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 181 ~lllLDEPt 189 (274)
T PRK14265 181 DVLLMDEPC 189 (274)
T ss_pred CEEEEeCCc
Confidence 999999885
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-09 Score=105.32 Aligned_cols=119 Identities=14% Similarity=0.235 Sum_probs=73.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|++++.+|.+.... .+.++.... .+++..+.+.+......
T Consensus 50 ~~vL~~v-s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-~i~yv~q~~~l~~~tv~enl~~~~~~~~~ 127 (282)
T cd03291 50 APVLKNI-NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-RISFSSQFSWIMPGTIKENIIFGVSYDEY 127 (282)
T ss_pred ccceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEEEEeCcccccccCHHHHhhcccccCHH
Confidence 3477777 77777888776 999999999999999999999999754322 122222211 12333333322100000
Q ss_pred -ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..++. ...+....||+||+||++++++| .|+.+.+|+|+
T Consensus 128 ~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 128 RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 01111111211 01123468999999999999999 68889999885
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-09 Score=112.47 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=79.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-CCCCCcccccc-------------ccccccc-----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNI-------------VSHLTEA-----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-~~G~~~~~~~~-------------v~~~t~s-----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|..+| .+|.+...... +..+... -+
T Consensus 273 ~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDV-SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccc-eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 3577777 77778888776 999999999999999999985 78876432211 1111111 12
Q ss_pred CC-CeeeeEeec----c----cccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVE----G----VLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~----~----~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+. . .... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 22 222222211 0 0010 12355666774 25788899999999999999999 68999999985
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-09 Score=93.46 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------------cccc
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------------VSHL 347 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------------v~~~ 347 (413)
...||..+.+-+| .+..+.|+..+ +||+|+||||||+.|.-+.-|.+|......+. +..+
T Consensus 9 n~~yg~~q~lfdi-~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmv 87 (242)
T COG4161 9 NCFYGAHQALFDI-TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87 (242)
T ss_pred ccccccchheeee-eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhh
Confidence 3456777777777 56556666555 99999999999999998888888863321111 1111
Q ss_pred cc--cCCCCCee-e-eEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 348 TE--APVPGTTL-G-IVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 348 t~--s~~pgtT~-~-~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.. .-||..|. + .+.-+.. +. ...+++.+-.+. ..++.+-.||||++|||+|+|+| +|.+...++
T Consensus 88 fqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde 167 (242)
T COG4161 88 FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred hhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC
Confidence 11 12343332 1 1111000 00 012344444443 46788899999999999999999 567777666
Q ss_pred C
Q 015085 412 S 412 (413)
Q Consensus 412 ~ 412 (413)
|
T Consensus 168 p 168 (242)
T COG4161 168 P 168 (242)
T ss_pred c
Confidence 5
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-09 Score=102.56 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=69.1
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------ccccccccC-C----CCCeeeeEeecc-----c-
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEAP-V----PGTTLGIVRVEG-----V- 365 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s~-~----pgtT~~~i~~~~-----~- 365 (413)
..|++++ +|+||+|||||+++|+|..++++|.+..... .+..+.... + +.+..+.+.... .
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 4566665 9999999999999999999999997553321 122222211 0 111112111100 0
Q ss_pred -cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 366 -LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 366 -l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. ....+++..|+. ..++....||+||+||+.+++++ .|+.+.+|+|+
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~ 141 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF 141 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00 012345556664 34567889999999999999999 67888888874
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-10 Score=103.13 Aligned_cols=130 Identities=15% Similarity=0.262 Sum_probs=90.4
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------ccccc--cC
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------SHLTE--AP 351 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------~~~t~--s~ 351 (413)
+-+..+.+|-..+++.| ++..+.|+++. +|+||+||||+|++|+|++.+++|.+......+ .+++. .-
T Consensus 5 ie~vtK~Fg~k~av~~i-sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGL 83 (300)
T COG4152 5 IEGVTKSFGDKKAVDNI-SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGL 83 (300)
T ss_pred EecchhccCceeeecce-eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhcc
Confidence 34566788888899999 88888999988 999999999999999999999999876544332 22221 12
Q ss_pred CCCCe-eeeEeeccccccc---------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVLPAQ---------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l~~~---------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|.+| .+.+.+...+.+- ..++.-.++. ...+....||-|.+|++.+-.++ .|+...||+||
T Consensus 84 y~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 84 YPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred CccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 23333 2334333332211 1233333443 34577899999999999776666 78889999987
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-09 Score=112.13 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=83.4
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+-+....|+. ..+++.+ ++..++|+.++ +|++|+|||||+|+|+|+++|.+|.+..+... +
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i-~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPV-SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 3555555556643 2478888 77777777666 99999999999999999999999986533222 2
Q ss_pred cccccc--CCCCCeeeeEeeccc-ccc-c-cccccccc-----------cc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGV-LPA-Q-AKLFDTPG-----------LL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~-l~~-~-~~liDtpG-----------l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+. -++||.++.+.+... ..+ . ...++..| +. .-......|||||+||+.++|++ +|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 222222 235565665543211 110 0 11111122 21 01123467999999999999999 778
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.+|+|
T Consensus 479 ililDE~ 485 (529)
T TIGR02857 479 LLLLDEP 485 (529)
T ss_pred EEEEeCc
Confidence 8888887
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-09 Score=102.65 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=79.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccc-----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNI----------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~----------- 343 (413)
+.+.+....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++. .|.+......
T Consensus 8 l~~~nl~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 8 IKVNNLSFYYDTQKILEGV-SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EEEeeEEEEeCCeeEeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 3444455566555677887 78888888777 9999999999999999999874 4532211111
Q ss_pred ---cccccc--cCCCCCeeeeEeeccc---c-cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 344 ---VSHLTE--APVPGTTLGIVRVEGV---L-PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 344 ---v~~~t~--s~~pgtT~~~i~~~~~---l-~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
+..+.. ..++.+..+.+.+... . .. ...+++..|+. ..++....||+||+||+++++++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 166 (261)
T PRK14258 87 RRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA 166 (261)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 101110 0112222222211000 0 00 01233344442 13567789999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 167 ~~p~vllLDEP~ 178 (261)
T PRK14258 167 VKPKVLLMDEPC 178 (261)
T ss_pred cCCCEEEEeCCC
Confidence 68889999885
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-09 Score=95.18 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=67.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.+++.+ ++...+|++++ +|+||+|||||||+|++ .+|.+... ...+. .....+.+ .. +..+
T Consensus 9 ~~l~~i-sl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~----~~~~~-----~~~~~~~~---~~-q~~~ 70 (176)
T cd03238 9 HNLQNL-DVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLI----SFLPK-----FSRNKLIF---ID-QLQF 70 (176)
T ss_pred eeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEEC----Ccccc-----cccccEEE---Eh-HHHH
Confidence 345566 66677787766 99999999999999974 34643211 01000 00111111 11 1446
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhh--c--CCccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL--K--PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~--~~~~~l~~~~ 413 (413)
++..|+.. .++....||+|++||+.+++++ . |+.+.+|+|+
T Consensus 71 l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 71 LIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred HHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 66677652 4677899999999999999999 6 7888888874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-09 Score=106.00 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=79.7
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc----------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV---------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v---------- 344 (413)
+.+-+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +.+|.+......+
T Consensus 46 l~i~nl~~~~~~~~iL~~i-s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGV-SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 3344445556555677777 77777888776 99999999999999999985 5678654222111
Q ss_pred ----cccccc--CCCCCeeeeEeecccc---------------c--c-----ccccccccccc-----CCCCCCCCCCHH
Q 015085 345 ----SHLTEA--PVPGTTLGIVRVEGVL---------------P--A-----QAKLFDTPGLL-----HPNQITTRLTRE 391 (413)
Q Consensus 345 ----~~~t~s--~~pgtT~~~i~~~~~l---------------~--~-----~~~liDtpGl~-----~~~~~~~~LS~g 391 (413)
.++... .++++..+.+.+.... . . ...+++..|+. ..++....||+|
T Consensus 125 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 111111 1122222222211000 0 0 01122233331 224667889999
Q ss_pred HHHHHHHhhhh--cCCccccCCCC
Q 015085 392 EQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 392 e~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|+||+.++++| .|+.+.||+|+
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPt 228 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPA 228 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999 67889998874
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.3e-09 Score=91.93 Aligned_cols=93 Identities=26% Similarity=0.367 Sum_probs=60.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
.++..+ ++...+|++++ +|+||+|||||+++|.|.+.+..|.+......+... .. . .....
T Consensus 13 ~~l~~~-~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~----------~~--~--~~~~~--- 74 (157)
T cd00267 13 TALDNV-SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL----------PL--E--ELRRR--- 74 (157)
T ss_pred eeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC----------CH--H--HHHhc---
Confidence 466666 66667777776 999999999999999999988877432111100000 00 0 00000
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++ ...||+||+|++.+++++ .++.+.+|+|+
T Consensus 75 ---i~~------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~ 108 (157)
T cd00267 75 ---IGY------VPQLSGGQRQRVALARALLLNPDLLLLDEPT 108 (157)
T ss_pred ---eEE------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 011999999999999999 67888888874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-09 Score=114.90 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=81.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------ccc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IVS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v~ 345 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|+++|.+|.+...+. .+.
T Consensus 342 i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRNI-NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEEEecCCCCCccccCc-eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 444444444432 4578888 77777777655 9999999999999999999999998653322 222
Q ss_pred cccccC--CCCCeeeeEeeccc--ccc--ccccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV--LPA--QAKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~--l~~--~~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.. ++||-++.+.+... ..+ .....+..| +.. -...-..|||||+||+.+||++ +++
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 333322 35665555543100 000 011111222 210 0112356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|.
T Consensus 501 ililDEpt 508 (582)
T PRK11176 501 ILILDEAT 508 (582)
T ss_pred EEEEECcc
Confidence 88888873
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-09 Score=106.64 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=80.5
Q ss_pred EEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCcccccc---------
Q 015085 281 LHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNI--------- 343 (413)
Q Consensus 281 V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~--------- 343 (413)
+.+-.....| +...+++.+ ++...+|++++ +|+||+|||||+++|+|... +.+|.+......
T Consensus 81 i~~~nls~~y~~~~~~~L~~i-s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 81 FEIRNFNFWYMNRTKHVLHDL-NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEEEeeEEEecCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 3344444455 334578888 78788888766 99999999999999999986 356764322111
Q ss_pred -----cccccccC--CCCCeeeeEeeccccc----cc------ccccccccc----c-CCCCCCCCCCHHHHHHHHHhhh
Q 015085 344 -----VSHLTEAP--VPGTTLGIVRVEGVLP----AQ------AKLFDTPGL----L-HPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 344 -----v~~~t~s~--~pgtT~~~i~~~~~l~----~~------~~liDtpGl----~-~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
+..+...+ +.+|.++.+.+..... .. ..+++..++ . ..+.....||+||+||+++||+
T Consensus 160 ~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARA 239 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARA 239 (329)
T ss_pred hhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 11121111 2344444433211000 00 111233333 1 2346678899999999999999
Q ss_pred h--cCCccccCCCC
Q 015085 402 L--KPRTYRIKVSL 413 (413)
Q Consensus 402 l--~~~~~~l~~~~ 413 (413)
| .++.+.||+|+
T Consensus 240 l~~~p~IlLLDEPt 253 (329)
T PRK14257 240 IALEPEVLLMDEPT 253 (329)
T ss_pred HHhCCCEEEEeCCc
Confidence 9 78899999875
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-09 Score=114.68 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=82.5
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc------------ccccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK------------NIVSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~------------~~v~~ 346 (413)
|.+....-.|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+. ..+..
T Consensus 335 I~~~~vsf~y~~~~~iL~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 335 VEFDDVSFSYDNSRQGVEDV-SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEEEeCCCCceecce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 444444455542 4578888 77777787666 999999999999999999999999754332 22223
Q ss_pred cccc--CCCCCeeeeEeeccc-c-ccc-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGV-L-PAQ-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~-l-~~~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+.+. -+.||-++.+.+... . +.. ...++..| +.. -...-..|||||+||+.+||++ .++.+
T Consensus 414 v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 414 VFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred EecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2222 235555555543210 0 000 11122222 211 1122346999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 494 iLDEpt 499 (588)
T PRK13657 494 ILDEAT 499 (588)
T ss_pred EEeCCc
Confidence 888874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-09 Score=102.84 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=79.9
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc------------
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV------------ 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v------------ 344 (413)
+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.++ .+|.+......+
T Consensus 10 ~~~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGI-SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR 88 (259)
T ss_pred EEEEEEEECCeEeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh
Confidence 33444455555677777 77778888776 999999999999999999874 367544222111
Q ss_pred --cccccc--CCCCCeeeeEeeccc----ccc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 345 --SHLTEA--PVPGTTLGIVRVEGV----LPA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 345 --~~~t~s--~~pgtT~~~i~~~~~----l~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
..+... .++.|..+.+.+... ... ...+++..|+. ..++....||+||+||+.++|+| .
T Consensus 89 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 168 (259)
T PRK14260 89 QIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIK 168 (259)
T ss_pred heEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 111111 122233332221100 000 01233444542 23567889999999999999999 6
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 169 p~lllLDEPt 178 (259)
T PRK14260 169 PKVLLMDEPC 178 (259)
T ss_pred CCEEEEcCCC
Confidence 8889998874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-09 Score=110.57 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=83.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-CCCCCcccccc-------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNI-------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-~~G~~~~~~~~-------------v~ 345 (413)
+.+.+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|..++ .+|.+...... +.
T Consensus 261 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHNL-SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EEEeceEEEECCeeEEeec-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 3344455566655678888 78778888777 999999999999999998765 57764322111 11
Q ss_pred cccccC--CC--CCeeeeE-eecc-----c---cc-----ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 346 HLTEAP--VP--GTTLGIV-RVEG-----V---LP-----AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 346 ~~t~s~--~p--gtT~~~i-~~~~-----~---l~-----~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.+.... .. .++...+ .... . .. ....+++..|+.. .++.+..||+||+||++++++| .
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 111110 01 1221111 0000 0 00 0123455667753 4677899999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.||+|+
T Consensus 420 p~lllLDEPt 429 (490)
T PRK10938 420 PTLLILDEPL 429 (490)
T ss_pred CCEEEEcCcc
Confidence 8999999985
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-09 Score=115.22 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=81.9
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc-cccccccccc--CCCCC
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEA--PVPGT 355 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s--~~pgt 355 (413)
+.+......+. ...+++.+ ++...+|++++ +|+||+|||||+++|+|+.++..|.+... +..+..+.+. -.++|
T Consensus 452 i~~~nv~~~~~~~~~il~~i-sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~t 530 (659)
T TIGR00954 452 IKFENIPLVTPNGDVLIESL-SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGT 530 (659)
T ss_pred EEEEeeEEECCCCCeeeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcC
Confidence 33444444442 34578888 77778888766 99999999999999999999888865422 1222233222 22444
Q ss_pred eeeeEeeccc--------c-c-cccccccccccc----------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--------L-P-AQAKLFDTPGLL----------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--------l-~-~~~~liDtpGl~----------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+.+... . . ....+++..|+. ........||+||+||++++|++ .|+.+.||+|.
T Consensus 531 v~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpt 610 (659)
T TIGR00954 531 LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610 (659)
T ss_pred HHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 4454433210 0 0 001222233332 11122468999999999999999 78889999874
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-09 Score=103.46 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=79.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc-----------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV----------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v----------- 344 (413)
.+-+....|+...+++.+ ++....|++++ +|+||+|||||+++|+|.+. +++|.+......+
T Consensus 26 ~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 104 (271)
T PRK14238 26 DTQNLNLWYGEDHALKNI-NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104 (271)
T ss_pred EEeeeEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHh
Confidence 334444455555677777 77777888776 99999999999999999986 5788654322111
Q ss_pred ---cccccc--CCCCCeeeeEeeccc---cccc-------ccccccc----ccc-CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 ---SHLTEA--PVPGTTLGIVRVEGV---LPAQ-------AKLFDTP----GLL-HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 ---~~~t~s--~~pgtT~~~i~~~~~---l~~~-------~~liDtp----Gl~-~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+... .++.+..+.+.+... .... ..+++.. ++. ..++....||+||+||+.++++|
T Consensus 105 ~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred hhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 111111 112222333221100 0000 0111122 221 23567889999999999999999
Q ss_pred cCCccccCCCC
Q 015085 403 KPRTYRIKVSL 413 (413)
Q Consensus 403 ~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 185 ~p~lllLDEPt 195 (271)
T PRK14238 185 EPDVILMDEPT 195 (271)
T ss_pred CCCEEEEeCCC
Confidence 58999999885
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-09 Score=118.03 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=82.6
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
|.+-...-.|+ ...+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+... +..
T Consensus 474 I~~~~vsf~y~~~~~iL~~i-sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 474 IVINDVSYSYGYGSNILSDI-SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred EEEEEEEEEcCCCCcceece-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 55555555554 24577887 77777776555 99999999999999999999999986533222 222
Q ss_pred ccccC--CCCCeeeeEeecc--cccc-c-cccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 347 LTEAP--VPGTTLGIVRVEG--VLPA-Q-AKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 347 ~t~s~--~pgtT~~~i~~~~--~l~~-~-~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
+.+.+ +.||-++.+.+.. .... . ....+..| +.. -...-..|||||+||+++||++ +|+.
T Consensus 553 v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred EecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 22221 3555555554320 0110 0 11111122 211 1123466999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 633 liLDE~T 639 (708)
T TIGR01193 633 LILDEST 639 (708)
T ss_pred EEEeCcc
Confidence 9998873
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-09 Score=111.65 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=86.1
Q ss_pred eEEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------
Q 015085 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------ 345 (413)
Q Consensus 280 ~V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------ 345 (413)
.|.+....-+|+ ...+++.+ ++..++|+.+. ||++|+|||||+|.|++++.+.+|.+..++..++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~i-s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDI-SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred eEEEEEEEEEcCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 467777777887 46788888 77777777665 9999999999999999999999998664322222
Q ss_pred cccccC--CCCCeeeeEeeccc-cc-cc-----------ccccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV-LP-AQ-----------AKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~-l~-~~-----------~~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+.. +.||..+.+.+.-. .. +. -.+...| |+.. -...-..|||||+||+++||++ .++.
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 222221 34555555443210 00 00 0122334 4432 1233457999999999999999 5667
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
+.||++
T Consensus 487 LILDEa 492 (567)
T COG1132 487 LILDEA 492 (567)
T ss_pred EEEecc
Confidence 888775
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-09 Score=113.07 Aligned_cols=118 Identities=17% Similarity=0.243 Sum_probs=78.5
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccccccC-----CCCC
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEAP-----VPGT 355 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s~-----~pgt 355 (413)
+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.... ++..
T Consensus 267 ~l~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 267 GVNDV-SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred Ccccc-eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 46666 67777888776 99999999999999999999999976532211 22222221 1222
Q ss_pred e-eeeEeecc-----c----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEG-----V----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~-----~----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+.. . .. ....+++..|+. ..++....||+||+||+.+|+++ .|+.+.||+|+
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt 423 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT 423 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 2 22221100 0 00 012455666773 35788999999999999999999 68999999985
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.8e-09 Score=102.36 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=77.5
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc--------------ccc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV--------------SHL 347 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v--------------~~~ 347 (413)
..||...+++.+ ++....|++++ +|+||+|||||+++|+|++.| .+|.+......+ ..+
T Consensus 16 ~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 94 (261)
T PRK14263 16 IFYGNFMAVRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94 (261)
T ss_pred EEeCCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEE
Confidence 344555677777 77778888776 999999999999999999876 567543222111 111
Q ss_pred ccc--CCCCCeeeeEeecccc---c-----cccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 348 TEA--PVPGTTLGIVRVEGVL---P-----AQAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 348 t~s--~~pgtT~~~i~~~~~l---~-----~~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
... .+..+..+.+.+.... . ....+++..|+. ..++....||+||+||+.++|++ .|+.+.+|
T Consensus 95 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 174 (261)
T PRK14263 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174 (261)
T ss_pred ecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 111 1122222322211000 0 012344555552 12345678999999999999999 67889999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 175 EPt 177 (261)
T PRK14263 175 EPC 177 (261)
T ss_pred CCC
Confidence 885
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-09 Score=100.78 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=77.0
Q ss_pred EEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc-----CCCCCCccccccc--------------c
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDGEEKNIV--------------S 345 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~-----~~~G~~~~~~~~v--------------~ 345 (413)
....|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.. +++|.+......+ .
T Consensus 9 v~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~ 87 (250)
T PRK14266 9 LNTYFDDAHILKNV-NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVG 87 (250)
T ss_pred EEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheE
Confidence 33445445577777 77777888776 99999999999999999864 3678644222111 1
Q ss_pred ccccc--CCCCCeeeeEeeccccc----cc------cccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLP----AQ------AKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~----~~------~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... .++++..+.+.+..... .. ..+++..|+. ..++....||+||+|++.+++++ .|+.
T Consensus 88 ~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 167 (250)
T PRK14266 88 MVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEV 167 (250)
T ss_pred EEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 11111 12333333332211000 00 1122333431 12466789999999999999999 6888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.+|+|+
T Consensus 168 lllDEP~ 174 (250)
T PRK14266 168 ILMDEPC 174 (250)
T ss_pred EEEcCCC
Confidence 9999885
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-09 Score=116.55 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=82.8
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
.|.+.+..-.|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|++.|.+|.+..+.. .+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i-~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNV-SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCCCCccceeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 3555555556643 3478888 77777777555 9999999999999999999999997653322 22
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.. +.||-++.+.+.-. ... ....++.. |+.. -...-..|||||+||+++||++ +|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 2222221 34555555543211 000 01112222 2211 1122356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 622 iliLDE~T 629 (694)
T TIGR03375 622 ILLLDEPT 629 (694)
T ss_pred EEEEeCCC
Confidence 89988873
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=96.97 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=84.4
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS 256 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~ 256 (413)
.|+..+.+.|.+.+.+++.++|+|++|||+.+..+..+..+.+.+... . .|+++++||+|.....
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~----------~-----~pvil~iNKID~~~~~ 130 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT----------K-----TPVILVVNKIDKVKPK 130 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc----------C-----CCeEEEEEccccCCcH
Confidence 378889999999999999999999999999997777777777776542 1 3899999999998653
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
. .+........... .+..++.+||++|.+++.|++.+...+.++
T Consensus 131 ~---~l~~~~~~~~~~~---~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 131 T---VLLKLIAFLKKLL---PFKEIVPISALKGDNVDTLLEIIKEYLPEG 174 (298)
T ss_pred H---HHHHHHHHHHhhC---CcceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence 2 1223322222222 467899999999999999999998877664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-09 Score=124.33 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=88.2
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~--pg 354 (413)
|.+-++.-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|.+++.+|++...+..+..+.+.++ .|
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSDI-NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 445555556643 3467777 77778887655 99999999999999999999999876554555556555543 56
Q ss_pred CeeeeEeeccccccc--cccccccccc-------C-----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQ--AKLFDTPGLL-------H-----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~--~~liDtpGl~-------~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|-++++.+....++. ..+++.-++. . -...-..|||||+||+++||++ .++.|.||+|+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 767766542111111 1122222221 0 0112346999999999999999 78999999885
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-09 Score=101.04 Aligned_cols=128 Identities=20% Similarity=0.213 Sum_probs=77.0
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccc--------------
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIV-------------- 344 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v-------------- 344 (413)
.....++...+++.+ ++...+|++++ +|+||+|||||+++|+|+..+ .+|.+......+
T Consensus 11 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 89 (253)
T PRK14261 11 NLNLWYGEKHALYDI-TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKI 89 (253)
T ss_pred eeEEEECCeeeeeee-EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceE
Confidence 334455555678887 77778888776 999999999999999998652 367543221111
Q ss_pred cccccc--CCCCCeeeeEeecccc----cc------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL----PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l----~~------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .++++..+.+.+.... .. ...+++..|+. ..++....||+||+||+.+++++ .|+
T Consensus 90 ~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 169 (253)
T PRK14261 90 GMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPE 169 (253)
T ss_pred EEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 111111 1122222222211000 00 01122333331 13567888999999999999999 689
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 170 lllLDEP~ 177 (253)
T PRK14261 170 VILMDEPC 177 (253)
T ss_pred EEEEeCCc
Confidence 99999885
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-09 Score=113.22 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=82.4
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------c
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------~ 345 (413)
+.+-.....|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.++|.+|.+..+...+ .
T Consensus 339 i~~~~v~f~y~~~~~~il~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 339 LTLNNVSFTYPDQPQPVLKGL-SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEEEECCCCCCcceecc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 555555555643 3578888 77777777666 999999999999999999999999865332222 1
Q ss_pred ccccc--CCCCCeeeeEeeccc-cc--cccccccccccc----------C-CCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LP--AQAKLFDTPGLL----------H-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~--~~~~liDtpGl~----------~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
.+.+. -+.||-++.+.+... .. .....++..|+. . -......|||||+||+++||++ .|+.+
T Consensus 418 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 418 VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 22211 134555555443110 00 001122222321 1 1123456999999999999999 67888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 498 ilDE~t 503 (574)
T PRK11160 498 LLDEPT 503 (574)
T ss_pred EEeCCc
Confidence 888873
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.1e-09 Score=100.20 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=70.9
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc-----------ccccccccccc------------
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTE------------ 349 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~-----------~~~~~v~~~t~------------ 349 (413)
.+++.+ +. ..+|+++. +|+||+|||||+++|+|+++|++|.+. .....+.....
T Consensus 15 ~~l~~i-~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRL-PV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcC-CC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 356666 43 55666555 999999999999999999999999763 10111100000
Q ss_pred ----cCCCCCeeeeEeecccc----ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 ----APVPGTTLGIVRVEGVL----PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 ----s~~pgtT~~~i~~~~~l----~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+.++.+.+...... .....+++..|+. ..++....||+||+|++.+++++ .|+.+.+|+|+
T Consensus 93 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 167 (255)
T cd03236 93 PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPS 167 (255)
T ss_pred cchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 00010000000000000 0112344555664 24577889999999999999999 68888888874
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-09 Score=104.74 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=67.9
Q ss_pred EEcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--CCCCCe-eeeEeecccc---c------c
Q 015085 311 AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA--PVPGTT-LGIVRVEGVL---P------A 368 (413)
Q Consensus 311 ~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s--~~pgtT-~~~i~~~~~l---~------~ 368 (413)
++|+||+|||||+++|+|+.++++|.+......+ ..+... -+++.| .+.+.+.... . .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 3799999999999999999999999754322211 111111 123322 2322221100 0 0
Q ss_pred ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..|+. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 12356666775 34678899999999999999999 68999999885
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-09 Score=114.93 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=82.9
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
|.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||++.|+|++.|.+|.+..+.. .+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGL-TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEEEECCCCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 555555555542 3477888 77777787666 9999999999999999999999998653322 22
Q ss_pred ccccccC--CCCCeeeeEeeccc-cc-cc-c---------cccc-cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LP-AQ-A---------KLFD-TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~-~~-~---------~liD-tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.+ +.||-++++.+... .. +. . .+++ .| |+.. -...-..|||||+||+++||++ +++
T Consensus 558 ~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ 637 (711)
T TIGR00958 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPR 637 (711)
T ss_pred eEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 2222222 35565555543211 00 00 0 1111 12 2221 1122356999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 638 ILILDEpT 645 (711)
T TIGR00958 638 VLILDEAT 645 (711)
T ss_pred EEEEEccc
Confidence 88888863
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=97.04 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=77.7
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc--C---CCCCCccccccc-------------
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDGEEKNIV------------- 344 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~--~---~~G~~~~~~~~v------------- 344 (413)
.+....++...+++.+ ++....|++++ +|+||+|||||+++|+|+.. + .+|.+......+
T Consensus 9 ~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 87 (252)
T PRK14255 9 SDVHLFYGKFEALKGI-DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87 (252)
T ss_pred EeEEEEECCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCe
Confidence 3444455555678887 77777888766 99999999999999999864 3 367543222111
Q ss_pred -cccccc--CCCCCeeeeEeecccc---cc-------ccccccccccc-----CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 -SHLTEA--PVPGTTLGIVRVEGVL---PA-------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 -~~~t~s--~~pgtT~~~i~~~~~l---~~-------~~~liDtpGl~-----~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... .++.+..+.+.+.... .. ....++..|+. ..++....||+||+||+.+++++ .|
T Consensus 88 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p 167 (252)
T PRK14255 88 VGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKP 167 (252)
T ss_pred EEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 111111 1222222222211000 00 01123333431 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.+|+|+
T Consensus 168 ~llllDEPt 176 (252)
T PRK14255 168 DVILLDEPT 176 (252)
T ss_pred CEEEEcCCC
Confidence 899999884
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-09 Score=110.56 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=77.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------------ccccc-----CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------------HLTEA-----PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------------~~t~s-----~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+......+. .+... -++.
T Consensus 262 ~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 262 PSIRDV-SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred ccccee-eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 467777 77778888766 9999999999999999999999997653321111 11110 0121
Q ss_pred Ce------eeeEeeccc----ccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT------LGIVRVEGV----LPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT------~~~i~~~~~----l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+ .+.+..... ... ...+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11 111110000 000 01234455663 34788999999999999999999 78999999984
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-09 Score=112.63 Aligned_cols=131 Identities=16% Similarity=0.255 Sum_probs=81.2
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------ 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------ 349 (413)
.|.+....-.|-.+ .+++.+ ++..+.|+++. |||+|+||||+.+.|..++.|.+|.+.-++..++.+..
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~l-sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNL-SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCc-eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 45555555555432 478888 78888888766 99999999999999999999999986644333322211
Q ss_pred ------cC--CCCCeeeeEeecccccccc-------------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 350 ------AP--VPGTTLGIVRVEGVLPAQA-------------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 350 ------s~--~pgtT~~~i~~~~~l~~~~-------------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.+ +.|+-+++|.+-......- .+-..| |.. .-...-..|||||+||++||||| +|
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P 623 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNP 623 (716)
T ss_pred eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCC
Confidence 11 2344445544421100000 111111 111 01122346999999999999999 78
Q ss_pred CccccCC
Q 015085 405 RTYRIKV 411 (413)
Q Consensus 405 ~~~~l~~ 411 (413)
++..||+
T Consensus 624 ~VLILDE 630 (716)
T KOG0058|consen 624 RVLILDE 630 (716)
T ss_pred CEEEEec
Confidence 8888875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-09 Score=111.81 Aligned_cols=132 Identities=15% Similarity=0.246 Sum_probs=82.0
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------cc
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------IV 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~v 344 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+.. .+
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~i-nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDGL-NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEEEECCCCCCCccccce-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 444444445532 3477887 77777887666 9999999999999999999999997653322 12
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cc---------ccccc-c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QA---------KLFDT-P-GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~---------~liDt-p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+...+ +.||-++.+.+... ... .. .+++. | |+.. -......|||||+||+.+||++ .+.
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 2222222 35555555543211 000 00 11111 1 2221 1123457999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.+|+|.
T Consensus 497 ililDEpt 504 (576)
T TIGR02204 497 ILLLDEAT 504 (576)
T ss_pred eEEEeCcc
Confidence 88888874
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-09 Score=100.17 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=72.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCC-CCeee
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVP-GTTLG 358 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~p-gtT~~ 358 (413)
.++.+ ++....|++++ +|+||+|||||+++|+|+.+ .+|.+...... +.++... ..+ .+..+
T Consensus 11 ~l~~v-sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPL-SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 34555 66667788776 99999999999999999985 47765422211 1111111 111 12222
Q ss_pred eEeeccc--ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc---------CCccccCCCC
Q 015085 359 IVRVEGV--LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK---------PRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~--l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~---------~~~~~l~~~~ 413 (413)
.+.+... ... ...+++..|+. ..++....||+||+||+.+++++. ++.+.+|+|+
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt 161 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPM 161 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCc
Confidence 2221100 000 12345555664 346788999999999999999995 3899999885
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-09 Score=112.24 Aligned_cols=132 Identities=16% Similarity=0.193 Sum_probs=80.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+....-.|.. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+...... +.
T Consensus 331 i~~~~v~f~y~~~~~~il~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDSI-SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEEEcCCCCCccccCe-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 444444444432 3477777 77777776555 99999999999999999999999986543322 22
Q ss_pred cccccC--CCCCeeeeEeeccc--ccc--cccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEGV--LPA--QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~~--l~~--~~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.+ +.||-++.+..... ... -...++.. |+.. -...-..|||||+||++++|++ .+.
T Consensus 410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 332222 24554444433110 000 01122222 2221 1112356999999999999999 678
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 490 illLDEpt 497 (571)
T TIGR02203 490 ILILDEAT 497 (571)
T ss_pred EEEEeCcc
Confidence 88888874
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.4e-09 Score=110.88 Aligned_cols=132 Identities=14% Similarity=0.037 Sum_probs=79.4
Q ss_pred EEEeEEEeecCc-----chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc--------
Q 015085 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH-------- 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-----~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~-------- 346 (413)
+.+-.....|+. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.+.|++|.+......+..
T Consensus 338 i~~~~v~f~y~~~~~~~~~~l~~v-s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 338 IELKDVHMNPKAPEGSEGFALGPI-DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEEEeCCCCCCcCceeccc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 444455555543 2377777 77777887666 99999999999999999999999986533222221
Q ss_pred ----ccccC--CCCCeeeeEeecccccccccccccccccC-------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 ----LTEAP--VPGTTLGIVRVEGVLPAQAKLFDTPGLLH-------PNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ----~t~s~--~pgtT~~~i~~~~~l~~~~~liDtpGl~~-------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+.... +.++..+..............++..|+.. .......|||||+||++++|++ .|+.+.+|+
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11111 13343332110000000011222223221 1112367999999999999999 788888888
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 497 ~t 498 (555)
T TIGR01194 497 WA 498 (555)
T ss_pred Cc
Confidence 73
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-08 Score=109.18 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=82.2
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+-+....|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|.++|.+|.+...... +..
T Consensus 335 i~~~~v~~~y~~~~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 335 VEFRHITFEFANSSQGVFDV-SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEEEEECCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 445555556643 3577777 77777777666 99999999999999999999999976432211 111
Q ss_pred cccc--CCCCCeeeeEeeccc-cc-ccc-----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGV-LP-AQA-----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~-l~-~~~-----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+... -+.+|.++.+.+... .. ... .+.+.| |+. .-......|||||+||+.+||+| .|+.+
T Consensus 414 v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~il 493 (585)
T TIGR01192 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493 (585)
T ss_pred EccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2111 124444444433110 00 000 111233 222 11234567999999999999999 78889
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 494 ilDEpt 499 (585)
T TIGR01192 494 VLDEAT 499 (585)
T ss_pred EEECCc
Confidence 888874
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-09 Score=113.41 Aligned_cols=119 Identities=15% Similarity=0.242 Sum_probs=78.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc----CC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA----PV 352 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s----~~ 352 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+ .+|.+...... +..+... .+
T Consensus 299 ~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNI-SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 3578888 78888888766 99999999999999999985 77875432211 1222221 11
Q ss_pred CC-CeeeeEeeccc-----cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 353 PG-TTLGIVRVEGV-----LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 353 pg-tT~~~i~~~~~-----l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. |..+.+.+... .. ....+++..|+. ..++.+..||+||+||+++++++ .|+.+.||+|+
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 453 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPT 453 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCc
Confidence 22 22222221100 00 012456666774 24788899999999999999999 68999999884
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7e-09 Score=110.85 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=81.5
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+....-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|++.|.+|.+..+... +..
T Consensus 341 i~~~~v~f~y~~~~~il~~i-~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 341 IDIDNVSFAYRDDNLVLQNI-NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEEeCCCCceeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 444444444432 3478888 77777777665 99999999999999999999999976533222 222
Q ss_pred cccc--CCCCCeeeeEeecccccc--ccccccccc-----------ccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 347 LTEA--PVPGTTLGIVRVEGVLPA--QAKLFDTPG-----------LLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~l~~--~~~liDtpG-----------l~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+.+. -++||-++.+........ .....+..| +.. -...-..|||||+||+.+||++ +++.+.
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~ill 499 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILI 499 (592)
T ss_pred EccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2222 235655555443210000 011122222 211 1122356999999999999999 678888
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|.
T Consensus 500 lDEpt 504 (592)
T PRK10790 500 LDEAT 504 (592)
T ss_pred EeCCc
Confidence 88873
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-09 Score=110.53 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=77.6
Q ss_pred EEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------
Q 015085 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------ 346 (413)
Q Consensus 281 V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------ 346 (413)
+.+-.....|.. ..+++.+ ++..++|+.+. +|+||+|||||++.|+|.++|++|.+..+...+..
T Consensus 323 i~~~~v~f~y~~~~~~l~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 323 LELRNVTFAYQDNGFSVGPI-NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEEEEEeCCCCeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 444445555543 3477777 77777777666 99999999999999999999999976533222211
Q ss_pred ccccC--CCCCeeeeEeecccccccccccccccccC----CCCC--CCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 347 LTEAP--VPGTTLGIVRVEGVLPAQAKLFDTPGLLH----PNQI--TTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 347 ~t~s~--~pgtT~~~i~~~~~l~~~~~liDtpGl~~----~~~~--~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.. +.+|..+. ...........+++..|+.. .+.. -..|||||+||+++||++ +|+.+.+|+|.
T Consensus 402 v~q~~~lf~~ti~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 402 VFTDFHLFDQLLGPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred EecChhHHHHhhccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11111 12222221 00000000011233333321 1110 247999999999999999 77888888763
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-08 Score=107.43 Aligned_cols=132 Identities=18% Similarity=0.182 Sum_probs=82.1
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+.+....|+ ...+++.+ ++..++|+.++ +|+||+|||||+++|+|.+.|.+|.+...... +.
T Consensus 317 i~~~~v~~~y~~~~~~~l~~~-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 317 LSVENVTIVPPGGKKPTLRGI-SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 44555555553 24578888 77777787666 99999999999999999999999975432211 11
Q ss_pred ccccc--CCCCCeeeeEeeccc-ccc-c-c---------cccc-cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LPA-Q-A---------KLFD-TP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~~-~-~---------~liD-tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... -+++|.++.+..... ... . . .+++ .| |+. .-......|||||+||+++||++ +|+.
T Consensus 396 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 396 YLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred EecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 22221 134555554432110 000 0 0 1111 11 222 11233567999999999999999 7899
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.+|+|.
T Consensus 476 lilDEpt 482 (544)
T TIGR01842 476 VVLDEPN 482 (544)
T ss_pred EEEeCCc
Confidence 9999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-09 Score=107.13 Aligned_cols=122 Identities=22% Similarity=0.311 Sum_probs=79.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC----CCCCccccccccccccc---CCCCCeeeeEe
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG----RGGDGEEKNIVSHLTEA---PVPGTTLGIVR 361 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~----~G~~~~~~~~v~~~t~s---~~pgtT~~~i~ 361 (413)
.+...+++.+ ++...+|+++. ||.+||||||+.++|.|+++.. +|.+......+..++.. .+.|..+..+.
T Consensus 19 ~~~~~~v~~v-sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~ 97 (539)
T COG1123 19 GGRVPAVRDV-SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97 (539)
T ss_pred Ccceeeeecc-eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEe
Confidence 3334677888 78888888877 9999999999999999999876 56543222211111111 11222222222
Q ss_pred ecc------------------cc----------cccccccccccccCC---CCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 362 VEG------------------VL----------PAQAKLFDTPGLLHP---NQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 362 ~~~------------------~l----------~~~~~liDtpGl~~~---~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+.. .. ....++++..|+..+ +++++.||||++||+++|.+| +|+.+.
T Consensus 98 Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLI 177 (539)
T COG1123 98 QDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLI 177 (539)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEE
Confidence 110 00 011357888888643 359999999999999999999 677788
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
+|+|
T Consensus 178 aDEP 181 (539)
T COG1123 178 ADEP 181 (539)
T ss_pred ECCC
Confidence 8876
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-09 Score=109.74 Aligned_cols=118 Identities=17% Similarity=0.121 Sum_probs=77.0
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccccccc-----CCCCC
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHLTEA-----PVPGT 355 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~t~s-----~~pgt 355 (413)
.++.+ ++....|++++ +|+||+|||||+++|+|+.+|.+|.+...... +.++... -++..
T Consensus 278 ~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNI-SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred Cccce-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 35666 67777788766 99999999999999999999999976432211 1122211 11222
Q ss_pred e-eeeEee------cccccc------ccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRV------EGVLPA------QAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~------~~~l~~------~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.. ...... ...+++..|+. ..++.+..||+||+||+.+++++ .|+.+.||+|+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 2 222110 000000 11345556774 35788899999999999999999 78999999985
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.9e-09 Score=90.56 Aligned_cols=65 Identities=31% Similarity=0.343 Sum_probs=44.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~~~~~~~ 386 (413)
++.++|.+|+|||||||+|+|.. ..++.+||+|.+.....+. .+....++|+||+... +
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----------------~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl----~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----------------QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL----S 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS----S
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccC----C
Confidence 46789999999999999999533 4467899999987653322 2346789999999652 3
Q ss_pred CCCHHH
Q 015085 387 RLTREE 392 (413)
Q Consensus 387 ~LS~ge 392 (413)
..|.+|
T Consensus 62 ~~s~ee 67 (156)
T PF02421_consen 62 SKSEEE 67 (156)
T ss_dssp SSSHHH
T ss_pred CCCcHH
Confidence 466666
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.3e-09 Score=109.79 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=75.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCCCee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPGTTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pgtT~ 357 (413)
..+++.+ ++..++|+.++ +|+||+|||||+++|+|+++|.+|.+...... +..+... -+.||.+
T Consensus 328 ~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 328 HPALENV-NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CccccCe-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 3577777 77777787666 99999999999999999999999975432211 1122211 1245444
Q ss_pred eeEeeccc-cc-cc-cccccc----------c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGV-LP-AQ-AKLFDT----------P-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~-l~-~~-~~liDt----------p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+... .. .. ....+. | |+.. -+.....|||||+||+.+||++ .|+.+.+|+|.
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 54433100 00 00 011111 1 2221 1233467999999999999999 78888888874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.4e-09 Score=111.89 Aligned_cols=132 Identities=14% Similarity=0.234 Sum_probs=81.5
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------ 345 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------ 345 (413)
+.+-.....|+ ...+++.+ ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+..+...+.
T Consensus 456 i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNL-NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 44545555553 23478887 77777776555 9999999999999999999999998653332222
Q ss_pred ccccc--CCCCCeeeeEeeccc-cc-cc-c---------ccc-ccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGV-LP-AQ-A---------KLF-DTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~-l~-~~-~---------~li-Dtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+... -++||.++.+..... .. .. . .++ ..| |+.. -......|||||+||+++||++ +|+.
T Consensus 535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 22211 134555555443110 00 00 0 111 122 2321 1223467999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 615 lilDEpt 621 (694)
T TIGR01846 615 LIFDEAT 621 (694)
T ss_pred EEEECCC
Confidence 8888874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.2e-09 Score=120.99 Aligned_cols=131 Identities=13% Similarity=0.265 Sum_probs=86.0
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC-CCCcccccccccccccC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR-GGDGEEKNIVSHLTEAP--VP 353 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~-G~~~~~~~~v~~~t~s~--~p 353 (413)
|.+-.+.-.|+. ..+++.+ ++..++|+.++ +|++|+|||||+++|+|.+.+.+ |.+. .+..+.++.+.+ +.
T Consensus 615 I~~~nvsf~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 615 ISIKNGYFSWDSKAERPTLSNI-NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-IRGTVAYVPQVSWIFN 692 (1622)
T ss_pred eEEEeeEEEccCCCCCceeece-eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-EcCeEEEEcCccccCC
Confidence 555555566643 3467777 77778887666 99999999999999999999999 7643 233444444444 35
Q ss_pred CCeeeeEeeccccccc--ccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 GTTLGIVRVEGVLPAQ--AKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 gtT~~~i~~~~~l~~~--~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
||-+++|.+....++. ..+++.-++ .. -...-..|||||+||+.+||++ .++.|.||+|+
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEpt 768 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPL 768 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 6777776542211111 111222221 10 0122346999999999999999 78999999885
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=98.02 Aligned_cols=125 Identities=19% Similarity=0.265 Sum_probs=81.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC-----CCCCCccccccccccccc---CCCCCee
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDGEEKNIVSHLTEA---PVPGTTL 357 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~-----~~G~~~~~~~~v~~~t~s---~~pgtT~ 357 (413)
.+..|...+++.+ ++...+|+++. ||.+||||||+.++|+|+++. .+|++......+-.+... .+.|..+
T Consensus 12 ~~~~g~v~av~~v-s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I 90 (316)
T COG0444 12 PTDAGVVKAVDGV-SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEI 90 (316)
T ss_pred ecCCccEEEEece-eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceE
Confidence 3444556778888 78888888777 999999999999999999973 234333222212122211 2334444
Q ss_pred eeEeecc----------------------cc-c------ccccccccccccCC----CCCCCCCCHHHHHHHHHhhhh--
Q 015085 358 GIVRVEG----------------------VL-P------AQAKLFDTPGLLHP----NQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 358 ~~i~~~~----------------------~l-~------~~~~liDtpGl~~~----~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..|.+.. .. . ....+++..|+..+ ++++++||||++|||+||-+|
T Consensus 91 ~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~ 170 (316)
T COG0444 91 AMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL 170 (316)
T ss_pred EEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC
Confidence 4433210 00 0 12346777788754 789999999999999999988
Q ss_pred cCCccccCCC
Q 015085 403 KPRTYRIKVS 412 (413)
Q Consensus 403 ~~~~~~l~~~ 412 (413)
.|+....|+|
T Consensus 171 ~P~LlIADEP 180 (316)
T COG0444 171 NPKLLIADEP 180 (316)
T ss_pred CCCEEEeCCC
Confidence 6777777766
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=118.47 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=87.4
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cc
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SH 346 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~ 346 (413)
+.+....+.++ ...+++.+ ++....|++++ +|+||+|||||+++|+|+..|++|.+...+..+ ..
T Consensus 929 L~I~nLsK~y~~~~k~aL~~l-sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRL-NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EEEEeEEEEecCCCceEEEee-EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 44455556663 35678888 77778888877 999999999999999999999999754322211 11
Q ss_pred cccc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... -++. |..+.+.+...+.+ ...+++..|+. ..++.+..|||||+||+.++++| .|+.+.||+
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1111 1122 22232222111110 12345666775 35688899999999999999999 678999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 1088 PT 1089 (2272)
T TIGR01257 1088 PT 1089 (2272)
T ss_pred CC
Confidence 84
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=118.65 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=87.5
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV-----------SH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v-----------~~ 346 (413)
+......+.|+. ..+++.+ ++...+|++++ +|+||+|||||+++|+|...|++|.+...+..+ ..
T Consensus 1938 L~v~nLsK~Y~~~~~~aL~~I-Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy 2016 (2272)
T TIGR01257 1938 LRLNELTKVYSGTSSPAVDRL-CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGY 2016 (2272)
T ss_pred EEEEEEEEEECCCCceEEEee-EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEE
Confidence 444555666764 4578888 78888888877 999999999999999999999999865332221 11
Q ss_pred cccc--CCCC-CeeeeEeeccccc---c------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 347 LTEA--PVPG-TTLGIVRVEGVLP---A------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 347 ~t~s--~~pg-tT~~~i~~~~~l~---~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
.... -++. |..+.+.+...+. . ..++++..|+. ..++.+..||||++||+.+|++| .|+.+.||+
T Consensus 2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 1111 0111 2222222111110 0 01345556665 35788899999999999999999 688999998
Q ss_pred CC
Q 015085 412 SL 413 (413)
Q Consensus 412 ~~ 413 (413)
|.
T Consensus 2097 PT 2098 (2272)
T TIGR01257 2097 PT 2098 (2272)
T ss_pred CC
Confidence 84
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=116.87 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=85.0
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCC
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGT 355 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgt 355 (413)
+.+.++...|+. ..+++.+ ++..++|+.++ +|+||+|||||+++|+|.+++.+|.+.... .+.++.+.+ +.+|
T Consensus 637 i~~~~~~~~~~~~~~~~l~~i-sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWIQNDS 714 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccccCCc
Confidence 555556666653 3477777 77777888666 999999999999999999999999754322 233333332 2455
Q ss_pred eeeeEeeccccccc--ccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLPAQ--AKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~~~--~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.++.+.+....+.. ..+++.- |.. .-+.....|||||+||+.+||++ .++.|.||+|+
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 55655432111110 0111111 111 11234567999999999999999 78899999885
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.8e-09 Score=119.81 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=77.3
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc--
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~-- 368 (413)
.+++.+ ++...+|++++ +|+||+|||||+++|+|++++.+|.+.... .+.++...+ +++|.++.+.+......
T Consensus 440 ~~l~~i-~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 440 PVLKNI-SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-RISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred cceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 356666 67777788666 999999999999999999999999765322 233333332 35665665543211111
Q ss_pred ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 ~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++.-++. .-......|||||+||+.+||++ .++.|.||+|+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 01112211211 01223568999999999999999 78999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-08 Score=108.89 Aligned_cols=126 Identities=20% Similarity=0.308 Sum_probs=78.6
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc--------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL-------- 347 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~-------- 347 (413)
+|.+-...-.|.-+ .+++.+ ++..+.|+.+. ||++|+||||+++.|.+.+.|.+|.+..++..+..+
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~-sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGV-SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCe-EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 45555555566443 567777 67777777555 999999999999999999999999866443333222
Q ss_pred ----cccC--CCCCeeeeEeecccccc--c-------------ccc------cccccccCCCCCCCCCCHHHHHHHHHhh
Q 015085 348 ----TEAP--VPGTTLGIVRVEGVLPA--Q-------------AKL------FDTPGLLHPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 348 ----t~s~--~pgtT~~~i~~~~~l~~--~-------------~~l------iDtpGl~~~~~~~~~LS~ge~q~v~i~r 400 (413)
.+.+ +.+|-.+.+.+. .++ . ..+ +||..-. +-+ .|||||+||++|||
T Consensus 429 iglV~QePvlF~~tI~eNI~~G--~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge---~g~-qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 429 IGLVSQEPVLFATTIRENIRYG--KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE---RGV-QLSGGQKQRIAIAR 502 (1228)
T ss_pred cCeeeechhhhcccHHHHHhcC--CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC---CCC-CCChHHHHHHHHHH
Confidence 1111 122223333321 100 0 011 2222222 222 29999999999999
Q ss_pred hh--cCCccccCCC
Q 015085 401 EL--KPRTYRIKVS 412 (413)
Q Consensus 401 ~l--~~~~~~l~~~ 412 (413)
+| .|+...||++
T Consensus 503 alv~~P~ILLLDEa 516 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEA 516 (1228)
T ss_pred HHHhCCCEEEecCc
Confidence 99 6888888875
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=88.64 Aligned_cols=104 Identities=22% Similarity=0.335 Sum_probs=63.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccc----cCCCCCeeeeE-eeccccc---
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTE----APVPGTTLGIV-RVEGVLP--- 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~----s~~pgtT~~~i-~~~~~l~--- 367 (413)
.+.++|.||+|||||.++|+|..+|++|++..++.. ++.+.. +-.|...++.+ ..+..+.
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~ 120 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccC
Confidence 456699999999999999999999999986533221 111111 11121111111 0111110
Q ss_pred -c---ccccccc---cccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 368 -A---QAKLFDT---PGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 368 -~---~~~liDt---pGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
. ...+++| .|+. ..+-.++.|+.|++|||++||+| .|+....++
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 0 1234444 3665 35677899999999999999998 566555543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-08 Score=115.51 Aligned_cols=132 Identities=16% Similarity=0.246 Sum_probs=83.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|. ...+++.+ ++..++|+.+ +||++|+|||||+++|+|++.|.+|.+..++.. +
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~i-sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGL-SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 355655555663 34578888 7777777654 599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-cccccc----------c-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFDT----------P-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liDt----------p-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ +.||-++++.......+ . ...++. | |+.. -...-..||+||+||+++||+| +++.
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2233322 35666666543111110 0 111111 2 2321 1122357999999999999999 6788
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1393 LILDEA 1398 (1495)
T PLN03232 1393 LVLDEA 1398 (1495)
T ss_pred EEEECC
Confidence 888875
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.7e-08 Score=104.87 Aligned_cols=119 Identities=21% Similarity=0.217 Sum_probs=77.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------ccccc--cCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------------SHLTE--APVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------------~~~t~--s~~pg 354 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|.+++++|.+......+ ..+.. ..+++
T Consensus 22 ~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 22 EVLKGI-SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 477777 77777888777 999999999999999999999999654322111 11111 11233
Q ss_pred Ce-eeeEeecc---ccc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEG---VLP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~---~l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.+.. ... ....+++..|+. ..++....||+||+|++.++|++ .|+.+.+|+|+
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~ 172 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPT 172 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 22 22221100 000 012345555664 34677889999999999999999 68999999885
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-08 Score=117.78 Aligned_cols=119 Identities=22% Similarity=0.290 Sum_probs=78.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|.+.+.+|.+... ..+.++.+.+ +.+|.++.+.+....+.
T Consensus 673 ~~iL~~i-sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 673 KVLLRDV-SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-RSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred ceeEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-CeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 3467777 77777888666 99999999999999999999999975422 2233333322 24555555543211110
Q ss_pred -cccccc---------cc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFD---------TP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liD---------tp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....++ .. |+. ..+.....|||||+||+.+||++ .++.|.||+|+
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 001111 11 332 12455788999999999999999 68999999985
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-08 Score=110.43 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=87.6
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC--CC
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~--pg 354 (413)
|..-++.-.|+. ..-+++| ++..++|+... +|+.|+||||||.+|+|.++..+|.+.-.+ .+.+..+.+| .|
T Consensus 519 i~i~~~sfsW~~~~~~~tL~dI-n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-siaYv~Q~pWI~ng 596 (1381)
T KOG0054|consen 519 IEIKNGSFSWDSESPEPTLKDI-NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-SVAYVPQQPWIQNG 596 (1381)
T ss_pred EEEeeeeEecCCCCCcccccce-eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-eEEEeccccHhhCC
Confidence 555556666654 2356677 67777887655 999999999999999999999998644322 3556666665 67
Q ss_pred CeeeeEeecccccccc--cc-------cccccccC-----CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVLPAQA--KL-------FDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~--~l-------iDtpGl~~-----~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|.+++|-+....++.. .+ -|.--+.. -...--.|||||+||+.+|||+ ..+.|.||.||
T Consensus 597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDpl 671 (1381)
T KOG0054|consen 597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPL 671 (1381)
T ss_pred cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcc
Confidence 8888876533332210 01 11111111 1112245999999999999999 78999999986
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-08 Score=100.24 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=80.0
Q ss_pred ceEEEeEEEeecCcch-hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC----
Q 015085 279 TKLHFVSAVKNWGLKS-LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV---- 352 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~-Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~---- 352 (413)
..|.+....-.||.+. +++.+ ++..++|+ +.++|.||+||||+||+|++... .+|.+..++..+..++...+
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gv-sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGV-SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecce-eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 3477777888888887 99998 66666665 66699999999999999999998 78886644433333322111
Q ss_pred ---C-------CCeeeeEeeccc---cccc------ccccc----cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 353 ---P-------GTTLGIVRVEGV---LPAQ------AKLFD----TP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 353 ---p-------gtT~~~i~~~~~---l~~~------~~liD----tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
| .|....+.+--. .... ..+-| .| |.. .-...-..|||||+||+.++|++ .+.
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 1 121222211000 0000 01111 11 111 11233456999999999999999 566
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.+|++
T Consensus 508 Il~~DEa 514 (591)
T KOG0057|consen 508 ILLLDEA 514 (591)
T ss_pred eEEecCc
Confidence 6666654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-08 Score=114.70 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=82.9
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|.. ..+++.+ ++..++|+ +.+||++|+|||||+++|++++.+.+|.+..++.. +
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~i-s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGL-SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 3555555555643 3578888 77777776 55599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeeccccc-cc-ccccc----------cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLP-AQ-AKLFD----------TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~-~~-~~liD----------tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ +.||-++++....... .. ...++ .| |+.. -...-..||+||+||+++||+| +++.
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 2233322 3566666554311110 00 01111 12 3321 1122357999999999999999 6788
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1396 LILDEA 1401 (1622)
T PLN03130 1396 LVLDEA 1401 (1622)
T ss_pred EEEECC
Confidence 888775
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-08 Score=105.77 Aligned_cols=124 Identities=23% Similarity=0.320 Sum_probs=77.9
Q ss_pred ecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC--CCCCcccccc--------ccccccc--CCCC-
Q 015085 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--RGGDGEEKNI--------VSHLTEA--PVPG- 354 (413)
Q Consensus 289 ~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~--~G~~~~~~~~--------v~~~t~s--~~pg- 354 (413)
.++...+++.+ ++....|+++. +|+||+|||||+++|+|...+. +|++..++.. +..+... ..+.
T Consensus 77 ~~~~~~iL~~v-s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 77 QIQERTILNGV-TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred cCCCCeeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcC
Confidence 44445677777 77777888776 9999999999999999998774 6764322211 1222211 1222
Q ss_pred CeeeeEeecc--ccc----c------cccccccccccC------CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEG--VLP----A------QAKLFDTPGLLH------PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~--~l~----~------~~~liDtpGl~~------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.. .+. . ...+++..|+.. .++....||+||+||+.++++| .|+.+.||+|.
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPt 234 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCC
Confidence 2233332210 000 0 113455556642 1345678999999999999999 68888888874
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-08 Score=115.57 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+..-.|. ...+++.+ ++...+|+ +.+||++|+|||||+++|+|++.+.+|.+..++.. +
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~v-sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGV-SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 355544444553 34478888 77777776 45599999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc--cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhhc---CC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKELK---PR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~--~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l~---~~ 405 (413)
..+.+.+ +.||-++++.......+ ....++..|+ .. -...-..||+||+||+++||+|. ++
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 2333322 35666666543111110 0111222222 10 01122569999999999999994 46
Q ss_pred ccccCCC
Q 015085 406 TYRIKVS 412 (413)
Q Consensus 406 ~~~l~~~ 412 (413)
.+.||++
T Consensus 1467 ILlLDEA 1473 (1560)
T PTZ00243 1467 FILMDEA 1473 (1560)
T ss_pred EEEEeCC
Confidence 7888875
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.2e-08 Score=115.08 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=47.0
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE 339 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~ 339 (413)
.+.+-.....|+. ..+++.+ ++..+.|+++. +|+||+|||||+++|+|++.|.+|.+..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDL-NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 4556666666753 2478888 77778887666 9999999999999999999999998654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-08 Score=113.90 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=40.5
Q ss_pred eEEEeEEEeecC---cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 280 KLHFVSAVKNWG---LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 280 ~V~~vSa~~~~G---i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
.|.+-...-.|. ...+++.+ ++..++|+.+. ||++|+|||||++.|+|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~l-sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDL-TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCe-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 355556666663 23578888 77777777655 999999999999999999998
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-08 Score=100.16 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=77.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc------------ccccccccc--cCCCCCe
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE------------KNIVSHLTE--APVPGTT 356 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~------------~~~v~~~t~--s~~pgtT 356 (413)
...+++.| ++....|+... ||++|+|||||.+.|.|.-.|.+|.+.-+ .+.+.++.+ .-++||.
T Consensus 348 ~~pil~~i-sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGI-SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecc-eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 34677787 77777777655 99999999999999999999999986522 233444443 3467777
Q ss_pred eeeEeecc-ccccc-----------ccc-cccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 357 LGIVRVEG-VLPAQ-----------AKL-FDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 357 ~~~i~~~~-~l~~~-----------~~l-iDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.++|.-.. ..+.. +++ +-.| |.. .-..--..||+||+||+.++|++ .|+...||+|
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 66654221 11110 111 1111 111 01112356999999999999999 6777778876
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-07 Score=99.20 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=75.1
Q ss_pred EeEEEeecCc-chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc-cccccccccC--C-CC-C
Q 015085 283 FVSAVKNWGL-KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--V-PG-T 355 (413)
Q Consensus 283 ~vSa~~~~Gi-~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s~--~-pg-t 355 (413)
+..+..+|+. ..+++.+ ++...+|+ +.++|+||+||||||++|+|...+.+|.+.... -.+.+..+.. + +. |
T Consensus 324 ~~~~~~~y~~~~~l~~~~-s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 324 FENVSKGYDGGRLLLKDL-SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred EeccccccCCCceeecCc-eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCc
Confidence 3444556644 4677777 66665554 666999999999999999999988888543111 0111111110 0 11 1
Q ss_pred eeeeEeecccc---ccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLGIVRVEGVL---PAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~~i~~~~~l---~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+.+...... .....++.-.|+. ...+.+..|||||+.|+++++.+ .|..+.||+|
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 11111100000 0001122223333 23577889999999999999999 6788999887
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-08 Score=89.02 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=35.7
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+++.+ ++....|++.+ -|++|+|||||+++|.+.+.+++|.+.
T Consensus 26 V~~~v-slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~ 69 (235)
T COG4778 26 VLRNV-SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL 69 (235)
T ss_pred eeece-eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEE
Confidence 45555 67777787766 899999999999999999999999743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-08 Score=112.88 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+.+..-.|. ...+++.+ ++..++|+. .+||++|+|||||+++|++++.+.+|.+..++.. +
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~i-s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHI-NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 355555555553 34578888 777777764 5599999999999999999999999986543322 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-ccccc----------cc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFD----------TP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liD----------tp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+++.+ +.||-++++.......+ . ...++ .| |+.. -...-..||+||+||+++||+| +++.
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 3333332 36766666542111111 1 01111 11 2221 1122356999999999999999 6778
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
+.||++
T Consensus 1443 LiLDEa 1448 (1522)
T TIGR00957 1443 LVLDEA 1448 (1522)
T ss_pred EEEECC
Confidence 888875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.9e-08 Score=90.31 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=69.4
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------cccccccCCCCCeeee------
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------VSHLTEAPVPGTTLGI------ 359 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------v~~~t~s~~pgtT~~~------ 359 (413)
.+..| ++...+|.+.+ +|+||+||||+|++|+|++.|.+|.+.-.... ++.++ ..-|.....
T Consensus 39 AVqdi-sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~--~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 39 AVQDI-SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG--LVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhee-eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHH--HHhhhhheeeeechh
Confidence 34444 55667788766 99999999999999999999999964411100 00000 001110000
Q ss_pred ---Eee---ccc---------ccccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 360 ---VRV---EGV---------LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 360 ---i~~---~~~---------l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+.+ .+. ++.-.+++|.-|+.+ .....||.||++|+.++.+| .|++.-||+|
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk--~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK--WPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh--hhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 000 000 111124556555554 56788999999999999999 6788888776
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=93.24 Aligned_cols=97 Identities=24% Similarity=0.426 Sum_probs=74.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
++..++..+++|++|+|+.+.....+..+..++.+. |+ ++++|+||+|++.. ......++.+.
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~----------g~-----~~vIvvNKWDl~~~--~~~~~~~~k~~ 315 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEA----------GR-----GIVIVVNKWDLVEE--DEATMEEFKKK 315 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc----------CC-----CeEEEEEccccCCc--hhhHHHHHHHH
Confidence 566788999999999999998777788887776543 44 89999999999875 22344455444
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.-+......+..++++||.+++|+..|++.+...
T Consensus 316 i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 316 LRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred HHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 4444454567889999999999999999998543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-07 Score=100.87 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=40.8
Q ss_pred ceEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
..|.+-.....||...+++.+ ++....|+.++ ||+||+|||||+++|+|..
T Consensus 176 ~~I~i~nls~~y~~~~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eeEEEceEEEEeCCCEEEECC-EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345555666777777799998 88888887655 9999999999999999863
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-08 Score=105.52 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=75.8
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccc---------cccccccC--CCC-C
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNI---------VSHLTEAP--VPG-T 355 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~---------v~~~t~s~--~pg-t 355 (413)
...+++.+ +....+|++++ +|+||+|||||+++|+|...+. +|++.-++.. +.++.+.+ ++. |
T Consensus 37 ~~~iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 37 RKHLLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred ccccccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35577777 77778888776 9999999999999999988764 4544322111 12222221 222 3
Q ss_pred eeeeEeeccc--ccc----------cccccccccccC-CCCCCC------CCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGV--LPA----------QAKLFDTPGLLH-PNQITT------RLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~--l~~----------~~~liDtpGl~~-~~~~~~------~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+... .+. ...+++.-|+.. .+.... .|||||+||+.++++| .|+.+.+|+|.
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 3333322111 110 124566666642 234433 5999999999999999 78888889874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.9e-08 Score=98.11 Aligned_cols=118 Identities=21% Similarity=0.258 Sum_probs=73.0
Q ss_pred hhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc------------ccC--CCCCeee
Q 015085 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT------------EAP--VPGTTLG 358 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t------------~s~--~pgtT~~ 358 (413)
.+++.+ ++....|+ +.++|++|||||||++.|.|...+++|++..+...+..+. ++. +.+|-++
T Consensus 352 ~~L~~~-~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~ 430 (573)
T COG4987 352 KALKNF-NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430 (573)
T ss_pred chhhcc-ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHH
Confidence 477777 66666665 6669999999999999999999999998664443333322 221 2344444
Q ss_pred eEeecccc--ccc-c----------cccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhhcC--CccccCCC
Q 015085 359 IVRVEGVL--PAQ-A----------KLFDTP-GLL-HPNQITTRLTREEQKLVNINKELKP--RTYRIKVS 412 (413)
Q Consensus 359 ~i~~~~~l--~~~-~----------~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l~~--~~~~l~~~ 412 (413)
++..--.. +.. . .+-+.| |+. +-+..-..|||||+||+.+||.+-. -...||+|
T Consensus 431 NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEP 501 (573)
T COG4987 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP 501 (573)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCC
Confidence 44321000 000 0 122222 443 2234456799999999999999943 44556655
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.4e-07 Score=80.14 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=74.6
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCcccccccccc----------cccC--
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKNIVSHL----------TEAP-- 351 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~~v~~~----------t~s~-- 351 (413)
-+.+...|+..+ ++...+|+|+- +||+|+|||||+.-+.|.+.+. +|++......+..+ ...+
T Consensus 10 l~l~g~cLLa~~-n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lL 88 (213)
T COG4136 10 LRLPGSCLLANV-NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALL 88 (213)
T ss_pred ecCCCceEEEee-eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccc
Confidence 344556677777 67777788766 9999999999999999877532 23211111111111 1111
Q ss_pred CCCCeee-eEee--ccccccc------cccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTTLG-IVRV--EGVLPAQ------AKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT~~-~i~~--~~~l~~~------~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|....+ .+.+ +..+.+. ...+|..|+. ..++.+..||||++-||.+.|+| .|+...|++||
T Consensus 89 FphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPF 162 (213)
T COG4136 89 FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162 (213)
T ss_pred ccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCch
Confidence 1211111 1111 0001110 1234445554 35688999999999999999999 78999999986
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=85.47 Aligned_cols=98 Identities=21% Similarity=0.324 Sum_probs=65.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...++..+|++++|||+.+.......+..+++... +. |+++|+||+|++... -.+.++++...+
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~----------~~-----p~ivvlNK~D~~~~~-~~~~~~~~~~~l 150 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL----------GI-----PIIVVLNKMDLIEKE-LEEIIEEIKEKL 150 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT----------T------SEEEEEETCTSSHHH-HHHHHHHHHHHH
T ss_pred ccceecccccceeeeeccccccccccccccccccc----------cc-----ceEEeeeeccchhhh-HHHHHHHHHHHh
Confidence 44557789999999999987554444455544332 33 799999999998221 112223333344
Q ss_pred HHHcCCCc--cceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISK--ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~--~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
++..+... ..+|+++||.+|+|++.|++.|.++.
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 45554332 45799999999999999999886654
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6e-08 Score=88.60 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=68.8
Q ss_pred hhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------ccccCCCCCe----
Q 015085 294 SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEAPVPGTT---- 356 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s~~pgtT---- 356 (413)
.+++.+ ++....++.+ ++|.||+|||||+|+|+|.+.+++|.+......+.. +++.+..||-
T Consensus 20 ~~l~~~-sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 20 RALNGL-SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHhcC-ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 455555 5656666654 499999999999999999999999986644333322 2233333322
Q ss_pred eeeEeeccccccc----------------ccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 357 LGIVRVEGVLPAQ----------------AKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 357 ~~~i~~~~~l~~~----------------~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
++.........+. ...+... |+. +-+.....|||||+|-+.+..+. .|+...||+
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 2110000000000 0111122 343 34677899999999998877766 456655553
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.1e-07 Score=87.06 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=69.5
Q ss_pred hhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH
Q 015085 181 DFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT 260 (413)
Q Consensus 181 ~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~ 260 (413)
.+.+.|.+.+...+..+|+|++|+|+.+.... ...+.+.+... + .|+++|+||+|+... .
T Consensus 64 ~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~----------~-----~p~ilV~NK~Dl~~~----~ 123 (270)
T TIGR00436 64 SLNRLMMKEARSAIGGVDLILFVVDSDQWNGD-GEFVLTKLQNL----------K-----RPVVLTRNKLDNKFK----D 123 (270)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEECCCCCch-HHHHHHHHHhc----------C-----CCEEEEEECeeCCCH----H
Confidence 34455666677888999999999999875432 23344433321 2 389999999999743 2
Q ss_pred HHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 261 RFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
.+..+........ .+..++.+||++|.|+++|++.+.+.+..+
T Consensus 124 ~~~~~~~~~~~~~---~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 124 KLLPLIDKYAILE---DFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 2333333333222 234799999999999999999997776553
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.5e-08 Score=92.97 Aligned_cols=61 Identities=41% Similarity=0.459 Sum_probs=46.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLHPN 382 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~~~ 382 (413)
|-+.++|.+|||||||+|.|.|. ...-+|+.|.||+..+.--.. -+.+..++||||+..+.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~---------------KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ---------------KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC---------------ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 56777999999999999999953 234568889999977654222 23467899999998653
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-08 Score=89.89 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=74.4
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC--cCCCCCCcccccccccccc---------------cCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGEEKNIVSHLTE---------------APVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~--~~~~G~~~~~~~~v~~~t~---------------s~~pg 354 (413)
.++++.+ ++....|++++ +||||+|||||.++|+|.- ..++|++......+..+.+ ..+||
T Consensus 17 keILkgv-nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGV-NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCc-ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 5888888 88889999988 9999999999999999975 5667765543333333222 23455
Q ss_pred Ceee-eEeeccc--cc----------cccccccccccc---CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 355 TTLG-IVRVEGV--LP----------AQAKLFDTPGLL---HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 355 tT~~-~i~~~~~--l~----------~~~~liDtpGl~---~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+.. +++.... .. ...+.....++. ....+-.-+||||++|.-+...+ .|+-..||+|
T Consensus 96 V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 4431 1111000 00 001122233332 12234466999999998887766 7888888876
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-08 Score=91.16 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=74.0
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc--ccccCCCCCe-eeeEeeccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH--LTEAPVPGTT-LGIVRVEGVLP- 367 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~--~t~s~~pgtT-~~~i~~~~~l~- 367 (413)
...++.| ++..++|+.+. ||.||+|||||+++|+|.++|++|.+....+.... +...-.|..| ++.+.+...+.
T Consensus 40 ~~aL~di-sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 40 FWALKDI-SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred EEEecCc-eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3456666 66667777555 99999999999999999999999975432221111 1111122222 33332211111
Q ss_pred --------cccccccccccc-CCCCCCCCCCHHHHHHHHHh--hhhcCCccccCCC
Q 015085 368 --------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNIN--KELKPRTYRIKVS 412 (413)
Q Consensus 368 --------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~--r~l~~~~~~l~~~ 412 (413)
..-+++|-..+. ..++.....|.|.+-|++.+ ..+.|+.+.||+-
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 012456666665 34678889999999888654 4558888888864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-07 Score=95.94 Aligned_cols=131 Identities=20% Similarity=0.333 Sum_probs=80.7
Q ss_pred eEEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC------
Q 015085 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP------ 351 (413)
Q Consensus 280 ~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~------ 351 (413)
.|.+....-+|.. ..++.+| ++....|+.+. ||++|+||||+++.|.+.....+|.+..++..++..|.+.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~di-sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDI-SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred eEEEEEeEEecCCCCceeecc-eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 5777777777764 4567777 67666666555 9999999999999999999999998876666665555432
Q ss_pred -CCC-Ce------eeeEeecccccccc-------------ccccccc-cc-CCCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 352 -VPG-TT------LGIVRVEGVLPAQA-------------KLFDTPG-LL-HPNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 352 -~pg-tT------~~~i~~~~~l~~~~-------------~liDtpG-l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
+|. |+ ...|++.-.--..- .++..|. .. .-...--.|||||+|||++||+| +|..
T Consensus 616 VVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~i 695 (790)
T KOG0056|consen 616 VVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSI 695 (790)
T ss_pred cccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcE
Confidence 232 22 12222210000000 1222221 11 11122346999999999999999 4555
Q ss_pred cccCC
Q 015085 407 YRIKV 411 (413)
Q Consensus 407 ~~l~~ 411 (413)
..||+
T Consensus 696 IlLDE 700 (790)
T KOG0056|consen 696 ILLDE 700 (790)
T ss_pred EEEcc
Confidence 55553
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-07 Score=94.40 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=66.4
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---cCCCCCeeeeEeeccc--ccc---ccccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---APVPGTTLGIVRVEGV--LPA---QAKLFDT 375 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---s~~pgtT~~~i~~~~~--l~~---~~~liDt 375 (413)
..|++.+ +|+||-||||+++.|+|.++|++|+ . ..-.+++-.+ ..+.||..+++.-... ... ..+++.-
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~-~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~p 442 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-E-EDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKP 442 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCC-C-ccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCc
Confidence 3467666 9999999999999999999999995 1 1111111111 1234444333221000 000 1123333
Q ss_pred cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 376 PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 376 pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
..+. .-++....|||||+|||++|-+| ....|.|++|
T Consensus 443 l~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 443 LNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred cchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 3333 23578899999999999999999 5688999987
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-07 Score=92.44 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=70.8
Q ss_pred ccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc---------------cC----CCCC
Q 015085 296 IDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE---------------AP----VPGT 355 (413)
Q Consensus 296 l~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~---------------s~----~pgt 355 (413)
++.+ ++...+|+ +.+||.+|+|||||=.+|++++.+. |.+...+..+...+. .+ -|-.
T Consensus 303 Vd~i-sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm 380 (534)
T COG4172 303 VDGI-SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM 380 (534)
T ss_pred eccc-eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence 3444 44445565 4559999999999999999999776 765533322222211 11 1222
Q ss_pred eeeeEeeccc------cc------cccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TLGIVRVEGV------LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~~~i~~~~~------l~------~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|.+.|--.+. +. .....+.-.|+. ..+++++++|||++||++|||++ +|+...||+|
T Consensus 381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC
Confidence 2221110000 00 001234445665 35799999999999999999998 7888888887
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.4e-08 Score=106.90 Aligned_cols=130 Identities=15% Similarity=0.276 Sum_probs=80.0
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------ 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~------ 349 (413)
+|.+-...-.|-. ..+++.+ ++....|+ +.+||++|+||||.|-.|-+.+.|+.|.+..++..++.+..
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l-~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNL-SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCC-cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 4555555555543 2466666 66666776 45599999999999999999999999986654444333221
Q ss_pred ------cC--CCCCeeeeEeeccccc-cccc-------------ccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 350 ------AP--VPGTTLGIVRVEGVLP-AQAK-------------LFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 350 ------s~--~pgtT~~~i~~~~~l~-~~~~-------------liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
.| +.+|-++.+.+- ... ...+ +...| |+. .-...-..|||||+||++||||| +
T Consensus 1066 i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred cceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 11 123334444432 000 0111 11122 221 11233457999999999999999 7
Q ss_pred CCccccCC
Q 015085 404 PRTYRIKV 411 (413)
Q Consensus 404 ~~~~~l~~ 411 (413)
|+...||+
T Consensus 1145 PkILLLDE 1152 (1228)
T KOG0055|consen 1145 PKILLLDE 1152 (1228)
T ss_pred CCeeeeec
Confidence 88888876
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.1e-07 Score=76.62 Aligned_cols=58 Identities=36% Similarity=0.395 Sum_probs=40.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||||+|++.. ...++..+++|.......+.+ .....++||||+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~---------------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK---------------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST---------------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc---------------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcc
Confidence 36789999999999999999532 223456677877663322222 23457999999975
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-07 Score=93.20 Aligned_cols=60 Identities=32% Similarity=0.390 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
+-++.++|.+|||||||||+|++.. ..-++.+||||+|.+...+.+++ ...++||.|+..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d---------------~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRD---------------RAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCC---------------ceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 3467889999999999999999644 23467899999999887655554 367999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-07 Score=108.27 Aligned_cols=121 Identities=24% Similarity=0.319 Sum_probs=76.4
Q ss_pred cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCc---CCCCCCcccccc--------cccccccC--CCC-Ce
Q 015085 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDGEEKNI--------VSHLTEAP--VPG-TT 356 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~---~~~G~~~~~~~~--------v~~~t~s~--~pg-tT 356 (413)
...+++.+ ++....|++++ +|+||+|||||+|+|+|... +.+|++..++.. +..+.+.. .+. |.
T Consensus 775 ~~~iL~~v-s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNV-DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 34678888 77777888666 99999999999999999986 566765432211 22222211 222 33
Q ss_pred eeeEeecccc------cc------cccccccccccC-CCCCCC----CCCHHHHHHHHHhhhh--cCC-ccccCCCC
Q 015085 357 LGIVRVEGVL------PA------QAKLFDTPGLLH-PNQITT----RLTREEQKLVNINKEL--KPR-TYRIKVSL 413 (413)
Q Consensus 357 ~~~i~~~~~l------~~------~~~liDtpGl~~-~~~~~~----~LS~ge~q~v~i~r~l--~~~-~~~l~~~~ 413 (413)
++.+.+...+ .. ...+++..|+.. .++.+. .||+||+||+.++++| +|+ .+.||+|.
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT 930 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT 930 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence 3433321111 00 123566666652 345554 7999999999999999 554 57888874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-07 Score=108.00 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-...-.| +...+++.+ ++..++|+ +.+||.+|+|||||+++|+|++. .+|.+..++.. +
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~i-s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDL-SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 35454444444 345678888 77777776 55599999999999999999986 67875533222 2
Q ss_pred ccccccC--CCCCeeeeEeecccccc-c-ccccccc-----------cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPA-Q-AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~-~-~~liDtp-----------Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.+ ++||-++++.......+ . ...++.. |+.. -...-..||+||+|++++||+| +++.
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 2333332 46776666542111110 0 1112222 2211 0112246999999999999999 5677
Q ss_pred cccCCC
Q 015085 407 YRIKVS 412 (413)
Q Consensus 407 ~~l~~~ 412 (413)
..||++
T Consensus 1375 LlLDEa 1380 (1490)
T TIGR01271 1375 LLLDEP 1380 (1490)
T ss_pred EEEeCC
Confidence 888775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=75.24 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=56.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..++.+|++++|+|+.+........+.+.+ + .|+++|+||+|+.+.....+..++|.+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-------------~-----~p~ilv~NK~Dl~~~~~~~~~~~~~~~---- 115 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASIF-------------V-----KPVIGLVTKIDLAEADVDIERAKELLE---- 115 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHhc-------------c-----CCeEEEEEeeccCCcccCHHHHHHHHH----
Confidence 457889999999999887654443332221 1 289999999999754333333344432
Q ss_pred HcCCCccceEEEeEEEeecCcchhccch
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
..+ ...++.+||+++.|++++++.+
T Consensus 116 ~~~---~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 116 TAG---AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred HcC---CCcEEEEecCCCCCHHHHHHHH
Confidence 233 2358889999999999998766
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-07 Score=82.59 Aligned_cols=58 Identities=29% Similarity=0.374 Sum_probs=46.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.+|.++|.+|||||||||+|++.. ....+|..||.|+....+. +.....++|.||...
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k--------------~LArtSktPGrTq~iNff~--~~~~~~lVDlPGYGy 82 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQK--------------NLARTSKTPGRTQLINFFE--VDDELRLVDLPGYGY 82 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCc--------------ceeecCCCCCccceeEEEE--ecCcEEEEeCCCccc
Confidence 478999999999999999999643 2356788999998776653 555688999999875
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.4e-07 Score=79.84 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=39.3
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+-||...-...+ ++....|++.. ||.+|+|||||+++|.+.+.|+.|.+.
T Consensus 14 k~Yg~~~gc~~v-sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~ 64 (258)
T COG4107 14 KLYGPGKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64 (258)
T ss_pred hhhCCCcCcccc-ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEE
Confidence 445555555555 56667788777 999999999999999999999999753
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.6e-08 Score=86.67 Aligned_cols=125 Identities=19% Similarity=0.263 Sum_probs=79.7
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc-ccccccccc--------------
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEA-------------- 350 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-~~v~~~t~s-------------- 350 (413)
.-.+|.-..++.+ ++....|+.-+ +||||+||||++..|.|..+|..|.+.... ..+..+...
T Consensus 12 sVsF~GF~Aln~l-s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P 90 (249)
T COG4674 12 SVSFGGFKALNDL-SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP 90 (249)
T ss_pred EEEEcceeeeeee-EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence 3455666667777 77777888877 999999999999999999999999754322 111111110
Q ss_pred -CCCC-CeeeeEeecc------------ccc-----cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhc--CCccc
Q 015085 351 -PVPG-TTLGIVRVEG------------VLP-----AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELK--PRTYR 408 (413)
Q Consensus 351 -~~pg-tT~~~i~~~~------------~l~-----~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~--~~~~~ 408 (413)
-+.. |..+.+.+.. ++. ..-.++.+-|+. ..+..+..||-||+|++.|..-+. |+...
T Consensus 91 tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLL 170 (249)
T COG4674 91 TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLL 170 (249)
T ss_pred eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEE
Confidence 0111 1111111100 000 012456677776 567889999999999999998884 56667
Q ss_pred cCCC
Q 015085 409 IKVS 412 (413)
Q Consensus 409 l~~~ 412 (413)
||+|
T Consensus 171 lDEP 174 (249)
T COG4674 171 LDEP 174 (249)
T ss_pred ecCc
Confidence 7766
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=81.07 Aligned_cols=107 Identities=14% Similarity=0.122 Sum_probs=58.2
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc--cccccc--cccCCCCC-eeeeEeeccc-------ccccccc
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK--NIVSHL--TEAPVPGT-TLGIVRVEGV-------LPAQAKL 372 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~--~~v~~~--t~s~~pgt-T~~~i~~~~~-------l~~~~~l 372 (413)
..|-+.++|+||+|||||+++|.++..+..|...... ..+-.. .....+.. ....+..... .....++
T Consensus 21 ~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~ 100 (197)
T cd03278 21 PPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEI 100 (197)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHH
Confidence 4454556999999999999999988755433100000 000000 00000100 0111111000 0111234
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHhhhhc-----C-CccccCCCC
Q 015085 373 FDTPGLLHPNQITTRLTREEQKLVNINKELK-----P-RTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~~~~~~~~LS~ge~q~v~i~r~l~-----~-~~~~l~~~~ 413 (413)
++..+. .++....||+||+|++.+++++. + +.+.+|+|.
T Consensus 101 l~~~~~--~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 101 IEAPGK--KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred HhCCCc--cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 444333 34678899999999999999973 3 788888874
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.6e-07 Score=83.86 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+.....||+|++|++.+++++. +..+.+|+|.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~ 190 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEID 190 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCc
Confidence 3567889999999999999992 6899999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-06 Score=90.28 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=69.7
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~ 266 (413)
+.+.+++.++|+|++|||+.......+..+.+.+.+. ++ ..|+++|+||+|+.... ...+.+..++
T Consensus 250 k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~----------~K---~~PVILVVNKIDl~dreeddkE~Lle~V 316 (741)
T PRK09866 250 KMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAV----------GQ---SVPLYVLVNKFDQQDRNSDDADQVRALI 316 (741)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc----------CC---CCCEEEEEEcccCCCcccchHHHHHHHH
Confidence 3344568889999999999876555566676666542 21 12899999999997432 1234556665
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+..+...+. .+..|+.+||.+|+|++.|++.|..
T Consensus 317 ~~~L~q~~i-~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 317 SGTLMKGCI-TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHhcCC-CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 544333222 4678999999999999999998854
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.9e-06 Score=85.89 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=67.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+...|.+.+..++..+|+|++|+|+.+.....+..+.+.+... + .++++|+||+|+... ....
T Consensus 117 l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~----------~-----~p~IlViNKiDl~~~--~~~~ 179 (339)
T PRK15494 117 LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL----------N-----IVPIFLLNKIDIESK--YLND 179 (339)
T ss_pred HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEEhhcCccc--cHHH
Confidence 4455666677778899999999998875444333444433321 2 267899999998643 2223
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
+.+++ +..+ ....++.+||++|.|+++|++.|.+.+..+
T Consensus 180 ~~~~l----~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 180 IKAFL----TENH--PDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred HHHHH----HhcC--CCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 33332 2221 235689999999999999999997776653
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.1e-07 Score=93.59 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=76.7
Q ss_pred eEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCC--CCCeeee
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGTTLGI 359 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~--pgtT~~~ 359 (413)
++.....|. .+++.+ ++....|+ +.+.|++|||||||+++|+|+-+..+|.+..- ...+-.+.+.+. .||-++.
T Consensus 398 l~l~~p~~~-~ll~~l-~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 398 LSLRTPDGQ-TLLSEL-NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeEECCCCC-eeeccc-eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHH
Confidence 444445444 677777 56666665 55599999999999999999999988864422 111112222221 2444455
Q ss_pred Eeeccccc--cc---cccccccccc-------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 360 VRVEGVLP--AQ---AKLFDTPGLL-------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 360 i~~~~~l~--~~---~~liDtpGl~-------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
+.++.... .. ..++...|+. ..++-...||+|||||++.||.+ +|+-.-||+
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDE 541 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEec
Confidence 54432111 01 1223333332 23455678999999999999999 666666654
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.7e-06 Score=82.84 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH
Q 015085 181 DFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT 260 (413)
Q Consensus 181 ~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~ 260 (413)
.+.+.+.+.+...+..+|+|++|+|+.+.....+..+.+.+... + .|+++|+||+|+... ..
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~----------~-----~pvilVlNKiDl~~~---~~ 130 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV----------K-----TPVILVLNKIDLVKD---KE 130 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc----------C-----CCEEEEEECCcCCCC---HH
Confidence 34455566677788899999999999884333344444444321 2 389999999999732 13
Q ss_pred HHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 261 RFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
.+...+....+.. ++.+++.+||+++.|+++|++.+.+....+
T Consensus 131 ~l~~~~~~l~~~~---~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 131 ELLPLLEELSELM---DFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhhC---CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 3334443333322 346799999999999999999987766543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-07 Score=107.39 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=74.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC--CCCCCccccc---------cccccccc--CCCC-Cee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKN---------IVSHLTEA--PVPG-TTL 357 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~---------~v~~~t~s--~~pg-tT~ 357 (413)
..+++.+ +.....|++++ +|+||+|||||+|+|+|...+ .+|++..... .+..+.+. ..+. |..
T Consensus 893 ~~iL~~v-s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 893 LQLLREV-TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred ceEeeCc-EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3578887 77777888766 999999999999999998753 4565432111 11111111 1222 223
Q ss_pred eeEeecc--cccc----------cccccccccccC-CCCCC-----CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEG--VLPA----------QAKLFDTPGLLH-PNQIT-----TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~--~l~~----------~~~liDtpGl~~-~~~~~-----~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.. .++. ..++++..|+.. .++.. ..||+||+||+.++++| .|+.+.||+|.
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 3332211 0100 123566667652 34443 57999999999999999 78889998874
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.2e-07 Score=88.34 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=76.8
Q ss_pred eecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC-----CCCCcccccccccccc---cCCCCCeee
Q 015085 288 KNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDGEEKNIVSHLTE---APVPGTTLG 358 (413)
Q Consensus 288 ~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~-----~G~~~~~~~~v~~~t~---s~~pgtT~~ 358 (413)
.+.|..++++.| ++....|+... ||.+|+|||-..++++++++.. +|.+...+..+-.++. ..+.|-.+.
T Consensus 18 ~~~~~~~aVk~i-sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 18 QEGGTVEAVKGI-SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred cCCcceEeeccc-eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 344567778888 77777787665 9999999999999999998541 2222221111111111 112222222
Q ss_pred eEeeccc--cc--------------------------ccccccccccccC----CCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 359 IVRVEGV--LP--------------------------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 359 ~i~~~~~--l~--------------------------~~~~liDtpGl~~----~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.|.+... ++ ...++++..||.. .+++++.|||||+|||+||.++ .|
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCC
Confidence 2221100 00 1136788888863 4688999999999999999999 45
Q ss_pred CccccCCC
Q 015085 405 RTYRIKVS 412 (413)
Q Consensus 405 ~~~~l~~~ 412 (413)
+....|+|
T Consensus 177 ~lLIADEP 184 (534)
T COG4172 177 DLLIADEP 184 (534)
T ss_pred CeEeecCC
Confidence 66665655
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-07 Score=108.77 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=75.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCC---CCCCccccc---------cccccccc--CCCC-Ce
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDGEEKN---------IVSHLTEA--PVPG-TT 356 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~---~G~~~~~~~---------~v~~~t~s--~~pg-tT 356 (413)
..+++.+ +...+.|++++ +|+||+|||||+++|+|.+.+. +|++.-++. .+..+.+. .++. |.
T Consensus 178 ~~IL~~v-s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 178 LTILKDA-SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred ceeccCC-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4577777 67777888777 9999999999999999999877 676432211 11111111 1122 22
Q ss_pred eeeEeeccccc--------------c-----------------------------cccccccccccC------CCCCCCC
Q 015085 357 LGIVRVEGVLP--------------A-----------------------------QAKLFDTPGLLH------PNQITTR 387 (413)
Q Consensus 357 ~~~i~~~~~l~--------------~-----------------------------~~~liDtpGl~~------~~~~~~~ 387 (413)
.+.+.+..... . ...+++..|+.. .+.....
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 22221110000 0 012445567642 2456788
Q ss_pred CCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 388 LTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 388 LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|||||+||+.+++++ .|+.+.+|+|.
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPT 364 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEIS 364 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCC
Confidence 999999999999999 67788888874
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=79.83 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=26.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
++....||+|++|++.+++++. |+.+.+|+|.
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt 159 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEID 159 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCC
Confidence 4567889999999999999883 6888888874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-06 Score=73.63 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=60.7
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.+........+|++++|+|+.+........+.+++... + .|+++|+||+|+.... ..
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~----------~-----~piiiv~nK~D~~~~~----~~--- 123 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS----------K-----KPVILVVNKVDNIKEE----DE--- 123 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc----------C-----CCEEEEEECcccCChH----HH---
Confidence 444445566789999999999875555455555555421 2 3899999999997542 11
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...+...+ ...++.+|++++.|++++++.+.+
T Consensus 124 -~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 124 -AAEFYSLG---FGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred -HHHHHhcC---CCCeEEEecccCCCHHHHHHHHHh
Confidence 11122222 246889999999999999988754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-07 Score=106.80 Aligned_cols=120 Identities=21% Similarity=0.175 Sum_probs=74.9
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC----cCCCCCCcccccc-----------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV----DAGRGGDGEEKNI-----------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~----~~~~G~~~~~~~~-----------v~~~t~s--~~pg 354 (413)
..+++.+ +...+.|++++ +|+||+|||||+|+|+|.. .+.+|++.-+... +..+.+. .+|.
T Consensus 74 ~~iL~~v-s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPM-DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 4577777 67777888776 9999999999999999986 3567765422211 1122111 1233
Q ss_pred -CeeeeEeeccc----------ccc-----c--ccccccccccC-C-----CCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 355 -TTLGIVRVEGV----------LPA-----Q--AKLFDTPGLLH-P-----NQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 355 -tT~~~i~~~~~----------l~~-----~--~~liDtpGl~~-~-----~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
|..+.+.+... ... . ..+++..|+.. . +.....|||||+||+.++++| .|+.+.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 22232222100 000 0 12455667752 2 234567999999999999999 788888
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|.
T Consensus 233 lDEPT 237 (1394)
T TIGR00956 233 WDNAT 237 (1394)
T ss_pred EeCCC
Confidence 88873
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=70.79 Aligned_cols=92 Identities=25% Similarity=0.377 Sum_probs=58.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....+|++++|+|+.+........+.+.+.. .+ .|+++|+||+|+.... ......+.....+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~----------~~-----~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~ 142 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILE----------EG-----KALVIVVNKWDLVEKD--SKTMKEFKKEIRR 142 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh----------cC-----CCEEEEEeccccCCcc--HHHHHHHHHHHHh
Confidence 44567899999999987654333333332221 12 3899999999997542 1223333333323
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
..+......++.+||+.+.|++++++.+.
T Consensus 143 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 143 KLPFLDYAPIVFISALTGQGVDKLFDAID 171 (174)
T ss_pred hcccccCCceEEEeccCCCCHHHHHHHHH
Confidence 22221234689999999999999988774
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.8e-06 Score=72.89 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=61.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|.+++|+|+.+........+...+.. .+ .|+++|+||+|+.... ......+++++.++
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~----------~~-----~~i~iv~nK~D~~~~~-~~~~~~~~~~~~~~ 144 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIARE----------GG-----LPIIVAINKIDRVGEE-DLEEVLREIKELLG 144 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH----------CC-----CCeEEEEECCCCcchh-cHHHHHHHHHHHHc
Confidence 44557899999999987543333333332221 12 3899999999998532 22333444544444
Q ss_pred HcCC----------CccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGI----------SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~----------~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+. ....+++.+||++++|++++++.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3331 1235789999999999999998886544
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-06 Score=87.39 Aligned_cols=71 Identities=31% Similarity=0.417 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC-CCC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH-PNQ 383 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~-~~~ 383 (413)
+-.+.++|++|||||||+|+|+... ..-+++.||||+|.+...+..++ ...|.||.|+.. .+.
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~d---------------rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~ 332 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSRED---------------RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND 332 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCC---------------ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC
Confidence 3478889999999999999999533 34568999999999887665544 467999999986 455
Q ss_pred CCCCCCHH
Q 015085 384 ITTRLTRE 391 (413)
Q Consensus 384 ~~~~LS~g 391 (413)
.+..++-.
T Consensus 333 ~iE~~gI~ 340 (531)
T KOG1191|consen 333 GIEALGIE 340 (531)
T ss_pred hhHHHhHH
Confidence 55555443
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-06 Score=80.72 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=32.7
Q ss_pred cccccccc--CCCCCCCCCCHHHHHHHHHhhhhc--C--CccccCCCC
Q 015085 372 LFDTPGLL--HPNQITTRLTREEQKLVNINKELK--P--RTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l~--~--~~~~l~~~~ 413 (413)
+++..|+. ..++....||+||+||+.+++++. | +.+.+|+|+
T Consensus 120 ~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt 167 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS 167 (226)
T ss_pred HHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 44455664 246788999999999999999994 4 488888874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-06 Score=81.22 Aligned_cols=87 Identities=24% Similarity=0.259 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCCCCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~~~~~ 385 (413)
..+++.|.+|||||||++.|++. ...+.++|-||.+..--.+..+ ....++|||||.. +..
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~A----------------kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLD--RPl 230 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTA----------------KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLD--RPL 230 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcC----------------CCccCCCCccccceeEeeeecCCceEEEecCCcccC--CCh
Confidence 46777999999999999999953 2345678888876643222222 2467999999986 667
Q ss_pred CCCCHHHHHHHHHhhhhcC-CccccCC
Q 015085 386 TRLTREEQKLVNINKELKP-RTYRIKV 411 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l~~-~~~~l~~ 411 (413)
++...=|+|-+.--+-|.. -.|.+|+
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~ 257 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDP 257 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcC
Confidence 7788888887654444432 3344443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-06 Score=83.78 Aligned_cols=97 Identities=25% Similarity=0.377 Sum_probs=63.1
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++++|+|+.+.....+..+.+.+.. .++ |+++|+||+|++.. ......+...
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~---~~~~~~~~~~ 308 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILE----------AGK-----ALVIVVNKWDLVKD---EKTREEFKKE 308 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----------cCC-----cEEEEEECcccCCC---HHHHHHHHHH
Confidence 44556788999999999987644334444443322 133 89999999999822 2333333333
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
............++.+||++|+|++++++.+.+..
T Consensus 309 ~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 309 LRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred HHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 22222222335799999999999999998886543
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=82.93 Aligned_cols=59 Identities=32% Similarity=0.339 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecc-cccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG-VLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~-~l~~~~~liDtpGl~~ 380 (413)
|.+.++|.+|||||||+|+|+|.. ...+++.|+||++.+.... .......++||||+..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~---------------~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~ 60 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK---------------ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE 60 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---------------EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCC
Confidence 467889999999999999999532 1235678899987543211 1123467899999974
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.2e-06 Score=70.03 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=85.6
Q ss_pred CCccchhhh-hhhhcCcccccccccC----CCCchhhHH-HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhH
Q 015085 152 KPVVCARCH-ALRHYGKVKDVTVENL----LPDFDFDHT-VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (413)
Q Consensus 152 ~~~~C~RC~-~l~hy~~~~~~~i~~~----~p~~~~~~~-l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~ 225 (413)
++.+||.-+ ...+|.+.+.+++.+- -|.+.|.+. ....+.-...++|++++|..+.|....+.+.+.....
T Consensus 14 KTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~--- 90 (148)
T COG4917 14 KTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV--- 90 (148)
T ss_pred chhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccc---
Confidence 455666533 2336766665553211 266667643 4566667788999999999999987777777655432
Q ss_pred hHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 226 ~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+++|-|+||+||.. ....+..+.|+++ .| -.+|+.+|+....|+++|++.+..
T Consensus 91 ---------------k~vIgvVTK~DLae-d~dI~~~~~~L~e----aG---a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 91 ---------------KKVIGVVTKADLAE-DADISLVKRWLRE----AG---AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ---------------cceEEEEecccccc-hHhHHHHHHHHHH----cC---CcceEEEeccCcccHHHHHHHHHh
Confidence 37999999999973 2244556666543 44 368999999999999999988744
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=79.97 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
+.....+.++.++++++|+|+.+...+ ....+..+.... ... .....+ +|+++|+||+|+... ...++
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL-~~~-~~~l~~-----kp~IIV~NK~DL~~~----~~~~~ 293 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNEL-KKY-SPELAE-----KPRIVVLNKIDLLDE----EELAE 293 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHH-HHh-hhhhcc-----CCEEEEEeCccCCCh----HHHHH
Confidence 455666677889999999999875322 112222222111 000 000012 389999999999754 22333
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+.+.+.+..+ ..++.+||++++|+++|++.|.+.
T Consensus 294 ~~~~l~~~~~----~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 294 LLKELKKALG----KPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred HHHHHHHHcC----CcEEEEEccCCcCHHHHHHHHHHH
Confidence 3333333333 368999999999999999888543
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=73.66 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=58.1
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
..+..++..+|++++|||+.+........+.+++... ++ +++|+|+||+|+.......+.+.+.++
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----------~~----~~iIvviNK~D~~~~~~~~~~~~~~i~ 145 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV----------GV----PYIVVFLNKADMVDDEELLELVEMEVR 145 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CcEEEEEeCCCCCCcHHHHHHHHHHHH
Confidence 3445667789999999999876554445555554432 32 247899999999743211223344455
Q ss_pred HHHHHcCCC-ccceEEEeEEEeecCcc
Q 015085 268 QRAREDGIS-KITKLHFVSAVKNWGLK 293 (413)
Q Consensus 268 ~~~~~~g~~-~~~~V~~vSa~~~~Gi~ 293 (413)
..+...|.. ....++++||.+|++..
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCCC
Confidence 555555531 12468999999998754
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.5e-06 Score=90.30 Aligned_cols=121 Identities=26% Similarity=0.355 Sum_probs=72.4
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcC---CCCCCcccc---------cccccccccC--CCCC
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA---GRGGDGEEK---------NIVSHLTEAP--VPGT 355 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~---~~G~~~~~~---------~~v~~~t~s~--~pgt 355 (413)
..+.+++.| +...+.|++.. +|++|+|||||+|+|+|.... .+|.+.-++ ....++++.. +|..
T Consensus 41 ~~k~iL~~v-sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGV-SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCc-EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 457888888 66667788877 999999999999999998864 234322111 0111111111 1222
Q ss_pred ee-eeEeec--ccccc----------cccccccccccC-CCCCCC-----CCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 356 TL-GIVRVE--GVLPA----------QAKLFDTPGLLH-PNQITT-----RLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 356 T~-~~i~~~--~~l~~----------~~~liDtpGl~~-~~~~~~-----~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
|. +.+.+. .+++. .-.+++.-|+.+ .+.... -+||||++|+.++-+| .|...-+|+|
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEP 197 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEP 197 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCC
Confidence 21 111110 01111 124566666652 344443 5999999999999999 6777777776
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=93.78 Aligned_cols=131 Identities=19% Similarity=0.245 Sum_probs=82.0
Q ss_pred eEEE--eEEEeecCcchhccchhhhcccCC-cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------
Q 015085 280 KLHF--VSAVKNWGLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------ 344 (413)
Q Consensus 280 ~V~~--vSa~~~~Gi~~Ll~~I~~l~~~~g-~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------ 344 (413)
.|.+ ++.....+...+++.| ++...+| +|.+||.+|+|||||+++|.++..+.+|.+..++-.+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~i-s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGI-SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCc-eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 3444 4555555667888888 5655555 5777999999999999999999999999866443332
Q ss_pred ccccccC--CCCCeeeeEeecccc-cccc----------ccc-ccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVL-PAQA----------KLF-DTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l-~~~~----------~li-Dtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+++.+ +.||.+.++.-.... ++.. ..+ ..| |+.. -..--..+|-||+|.+++||+| +.+.
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 2333333 367766544311111 1111 111 233 2321 1122367999999999999999 5677
Q ss_pred cccCC
Q 015085 407 YRIKV 411 (413)
Q Consensus 407 ~~l~~ 411 (413)
..||+
T Consensus 1297 LvLDE 1301 (1381)
T KOG0054|consen 1297 LVLDE 1301 (1381)
T ss_pred EEEec
Confidence 77765
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.6e-06 Score=76.95 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------------~~~~~l~~~~ 413 (413)
++....||+||+|++.+++++. ++.+.+|+|+
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~ 161 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF 161 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence 5667889999999999999994 4678888874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-06 Score=79.91 Aligned_cols=60 Identities=27% Similarity=0.433 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.-++.++|.+|||||||+|+|+|... ..++.+.++|.....+.... .....++||||+..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~---------------~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERK---------------AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 34788899999999999999996532 12234455555544332222 22468999999975
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-06 Score=84.74 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=73.7
Q ss_pred eEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc----cccccccccCC--CCCe
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK----NIVSHLTEAPV--PGTT 356 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~----~~v~~~t~s~~--pgtT 356 (413)
++...-.+...|++.+ ++....|. +.+.|+||+|||+|++.|.|+-+..+|.+..-. ..+-.+.+.++ -||-
T Consensus 439 v~l~tPt~g~~lie~L-s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTL 517 (659)
T KOG0060|consen 439 VSLSTPTNGDLLIENL-SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTL 517 (659)
T ss_pred eeecCCCCCceeeeee-eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccch
Confidence 3333444445566666 55555554 566999999999999999999987777543211 11222333322 3444
Q ss_pred eeeEeeccccc----cc------ccccccc----------ccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCC
Q 015085 357 LGIVRVEGVLP----AQ------AKLFDTP----------GLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKV 411 (413)
Q Consensus 357 ~~~i~~~~~l~----~~------~~liDtp----------Gl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~ 411 (413)
++.+-++..-. +. ..+++.. |+. ......+.||+||+||++.||-+ +|+--.||+
T Consensus 518 RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 55544431100 00 0111111 222 12344678999999999999998 777666664
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=71.47 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=58.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
+..++..+|++++|+|+.+........+.++. .+ .|+++|+||+|+... ....+.+|+
T Consensus 58 ~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~------------~~-----~~ii~v~nK~Dl~~~--~~~~~~~~~--- 115 (158)
T PRK15467 58 LITTLQDVDMLIYVHGANDPESRLPAGLLDIG------------VS-----KRQIAVISKTDMPDA--DVAATRKLL--- 115 (158)
T ss_pred HHHHHhcCCEEEEEEeCCCcccccCHHHHhcc------------CC-----CCeEEEEEccccCcc--cHHHHHHHH---
Confidence 33456789999999999876543333322210 12 389999999998532 233344443
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+. ...++.+||+++.|+++|++.+.+..
T Consensus 116 -~~~~~--~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 116 -LETGF--EEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred -HHcCC--CCCEEEEECCCccCHHHHHHHHHHhc
Confidence 33332 14789999999999999999886543
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.5e-06 Score=77.91 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCCCCCCCHHHHHH------HHHhhhh--cCCccccCCCC
Q 015085 382 NQITTRLTREEQKL------VNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~------v~i~r~l--~~~~~~l~~~~ 413 (413)
++....||+||+|+ +.+++++ .|+.+.+|+|+
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 45678999999996 5677787 78999999885
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-06 Score=88.23 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=66.6
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc---cccccc-----------------ccc-----------cC
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE---KNIVSH-----------------LTE-----------AP 351 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~---~~~v~~-----------------~t~-----------s~ 351 (413)
+..|++.. +|+||.||||.+++|+|.+.|.-|..... ...+.+ +.. ..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 35567666 99999999999999999998877752210 000000 000 01
Q ss_pred CCCCeeeeEeecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 352 VPGTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 352 ~pgtT~~~i~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+-|++.+.+.-.-.....-++++..++.+ .++-.+.|||||+||++++-++ ....|-.++|
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEp 240 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEP 240 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCC
Confidence 12333222221000011124666677763 4688999999999999999999 4567777765
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=73.88 Aligned_cols=89 Identities=24% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|++++|+|+.......+..+.+++... ++ |+++|+||+|+++.... ......++..++..|
T Consensus 108 ~~~D~~llVvda~~g~~~~d~~~l~~l~~~----------~i-----p~ivvvNK~D~~~~~~~-~~~~~~l~~~L~~~g 171 (224)
T cd04165 108 YAPDYAMLVVAANAGIIGMTKEHLGLALAL----------NI-----PVFVVVTKIDLAPANIL-QETLKDLKRILKVPG 171 (224)
T ss_pred cCCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC-----CEEEEEECccccCHHHH-HHHHHHHHHHhcCCC
Confidence 368999999999876665566666665432 33 89999999999754211 111111222222111
Q ss_pred C----------------------CccceEEEeEEEeecCcchhccch
Q 015085 275 I----------------------SKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 275 ~----------------------~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
. ....+|+.+|+.+|.|++.|.+.|
T Consensus 172 ~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 172 VRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred ccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 0 123378899999999999988877
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-05 Score=70.01 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=55.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+...........++... + .+|+++|+||+|+.... ........+.+.
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~----------~----~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~ 132 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL----------G----IKRGLVVLTKADLVDED-WLELVEEEIREL 132 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh----------C----CCcEEEEEECccccCHH-HHHHHHHHHHHH
Confidence 34556789999999999763222111211222110 1 13899999999997431 011112222233
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
++..+. ....++.+||+++.|++++++.+.
T Consensus 133 ~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 133 LAGTFL-ADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred HHhcCc-CCCcEEEEeCCCCcCHHHHHHHHh
Confidence 332211 124689999999999999988763
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.2e-05 Score=82.67 Aligned_cols=95 Identities=23% Similarity=0.376 Sum_probs=62.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+..+++..+|++++|+|+.+.....+..+.+++.. .++ ++++|+||+|+... ....++...
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~----------~~~-----~~ivv~NK~Dl~~~----~~~~~~~~~ 308 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALE----------AGR-----ALVIVVNKWDLVDE----KTMEEFKKE 308 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----cEEEEEECccCCCH----HHHHHHHHH
Confidence 44556788999999999987654444444444332 133 89999999999733 223333222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...........+++.+||++++|++++++.+.+.
T Consensus 309 ~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 309 LRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred HHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222222233579999999999999999888554
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.1e-06 Score=86.57 Aligned_cols=119 Identities=16% Similarity=0.199 Sum_probs=69.5
Q ss_pred hhccchhhhccc-CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-cccccccccc-----CCCCCeeeeEeecc--
Q 015085 294 SLIDDVVDLAGK-RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEA-----PVPGTTLGIVRVEG-- 364 (413)
Q Consensus 294 ~Ll~~I~~l~~~-~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s-----~~pgtT~~~i~~~~-- 364 (413)
.++..+ ++... ...+.+||+||+||||||+++.|.+.|..|.+... ...+....+. .+.-+.++++.-.+
T Consensus 404 ~iy~~l-~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~ 482 (614)
T KOG0927|consen 404 MIYKKL-NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD 482 (614)
T ss_pred hhhhhh-hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc
Confidence 455555 44333 33567799999999999999999999999965421 1111100000 00000000000000
Q ss_pred --cccccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 365 --VLPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 365 --~l~~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
....-..++.-.|+.. .......||+|++.||+.++.+ .|....||+|+
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPt 537 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPT 537 (614)
T ss_pred cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCC
Confidence 0001123455556652 2456789999999999999988 67888888875
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-06 Score=76.80 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=38.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
++.++|.+|+|||||+|+|+|......+ ...+++|.+.......+ .....++||||+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEECCeEEEEEECcCCCCc
Confidence 4778999999999999999975422111 11234444432221112 235789999999753
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.1e-05 Score=71.17 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=56.7
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
.+.+..+|++++|+|+.+...+ ...+..+..... .+.... ...|+++|+||+|+.+.. ...+|.....
T Consensus 73 ~~~~~~~d~vi~v~D~~~~~~~-~~~~~~~~~~l~-----~~~~~~--~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~ 140 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGDDDP-VEDYKTIRNELE-----LYNPEL--LEKPRIVVLNKIDLLDEE----ELFELLKELL 140 (170)
T ss_pred HHHHHhCCEEEEEEecCCCCCH-HHHHHHHHHHHH-----HhCccc--cccccEEEEEchhcCCch----hhHHHHHHHH
Confidence 3445568999999999875212 122222222110 000000 113899999999997653 2334444444
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+... ...++.+||+.+.|++++++.+.+
T Consensus 141 ~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 141 KELW---GKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred hhCC---CCCEEEEecCCCCCHHHHHHHHHh
Confidence 3321 145889999999999999988743
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=78.49 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.....+.++.+++++||+|+++.. + ...+..+.... ..+.... ..+|+++|+||+|+.+.... ....
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~-s-~e~~~~~~~EL-----~~~~~~L--~~kp~IIV~NKiDL~~~~~~---~~~~ 293 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVD-P-VEDYKTIRNEL-----EKYSPEL--ADKPRILVLNKIDLLDEEEE---REKR 293 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCC-C-HHHHHHHHHHH-----HHhhhhc--ccCCeEEEEECcccCCchhH---HHHH
Confidence 5556667788899999999998754 2 22222222211 1111100 11389999999999754211 1111
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+...+..+ ..++.+||+++.|+++|++.|.+..
T Consensus 294 ~~~~~~~~~----~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 294 AALELAALG----GPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred HHHHHHhcC----CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 222222222 3689999999999999999886554
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-06 Score=85.09 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=75.4
Q ss_pred EEeec-Ccchhccchhhhc-ccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc-ccccccc---CC--CCCee
Q 015085 286 AVKNW-GLKSLIDDVVDLA-GKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-VSHLTEA---PV--PGTTL 357 (413)
Q Consensus 286 a~~~~-Gi~~Ll~~I~~l~-~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-v~~~t~s---~~--pgtT~ 357 (413)
..-+| |.+.|+..+ ++- .....|.+|||||+|||||++.|+|.+.|..|+....... +...... .+ -.|..
T Consensus 592 VtFgy~gqkpLFkkl-dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~ 670 (807)
T KOG0066|consen 592 VTFGYPGQKPLFKKL-DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPV 670 (807)
T ss_pred ccccCCCCCchhhcc-cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHH
Confidence 34455 566777766 332 2334688899999999999999999999999964432111 1100000 00 00111
Q ss_pred eeEeeccccc--cccccccccccc-CCCC-CCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 358 GIVRVEGVLP--AQAKLFDTPGLL-HPNQ-ITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 358 ~~i~~~~~l~--~~~~liDtpGl~-~~~~-~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+++.-.+-++ .....+.+.|+. +.+. ....||||++.||+++--- .|.+..|++|
T Consensus 671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 2211111111 123456778886 3332 3678999999999988543 6788888876
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=73.40 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred HHHhhhcCCCcEEEEEEeCCCC-CCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~-~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
......+..+|++++|+|+.+. ...........+... +. +++++|+||+|+.... ......+.+
T Consensus 98 ~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~----------~~----~~iiivvNK~Dl~~~~-~~~~~~~~i 162 (203)
T cd01888 98 ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM----------GL----KHIIIVQNKIDLVKEE-QALENYEQI 162 (203)
T ss_pred HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc----------CC----CcEEEEEEchhccCHH-HHHHHHHHH
Confidence 3445566678999999999873 222222222222211 21 3789999999997431 011111222
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+..... ....++.+||+++.|+++|++.+.+...
T Consensus 163 ~~~~~~~~~-~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 163 KKFVKGTIA-ENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHhcccc-CCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 222222111 1246899999999999999998866544
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=78.12 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=65.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCc-hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSF-PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~-~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
..+....+|+++||||++|+.... .....+.|... +. ...|+|+|+||+|++.... ....+
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----------~~--~~~p~i~v~NKiD~~~~~~----~~~~~-- 326 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----------GA--DEIPIILVLNKIDLLEDEE----ILAEL-- 326 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----------CC--CCCCEEEEEecccccCchh----hhhhh--
Confidence 344556799999999999872111 12223333321 11 2249999999999986532 11111
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhccc-CCcEEE-EcCCCCc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-RGNVWA-IGAQNAG 318 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~-~g~~~~-vG~ng~G 318 (413)
... ....+++||++++|++.|.+.|...... ...+.+ +.....|
T Consensus 327 --~~~----~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp~~~~~ 372 (411)
T COG2262 327 --ERG----SPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELPYTDAG 372 (411)
T ss_pred --hhc----CCCeEEEEeccCcCHHHHHHHHHHHhhhcccceEEEcCccccc
Confidence 111 1257899999999999999998766542 223444 7777777
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-06 Score=84.75 Aligned_cols=44 Identities=30% Similarity=0.296 Sum_probs=36.8
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v 344 (413)
++..++|++++ +|.||+|||||+..|+|+..|++|++..+++.+
T Consensus 343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 55567888777 999999999999999999999999876554444
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-06 Score=85.69 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=73.0
Q ss_pred ceEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccc--ccc-ccccccCCCC
Q 015085 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK--NIV-SHLTEAPVPG 354 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~--~~v-~~~t~s~~pg 354 (413)
.+|+...-.-.+|...|+..- ++...+|.-|. ||+||+|||||+++|.. |.+.... ..+ ..-+.....+
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a-~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKA-NLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred cceeeeeeeeeecchhhhcCC-ceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 356665666677888888776 66666676666 99999999999999985 1111000 000 0000000000
Q ss_pred Ce-----eeeEeeccccc---ccccccc----cccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 355 TT-----LGIVRVEGVLP---AQAKLFD----TPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 355 tT-----~~~i~~~~~l~---~~~~liD----tpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+- .+++.....+. ...++++ -.|+.. ..+.+..||||.+.|+++|||+ +|+...||+|
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 00 01111000000 0122333 344432 2467899999999999999999 7888999887
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=76.57 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 383 QITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
.....||+|++|++.++++|. ++.+.+|+|.
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt 198 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVD 198 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 567899999999999999883 4888899874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.1e-06 Score=85.61 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=48.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~~~~~~ 386 (413)
.+.++|.+|+|||||||+|+| ....+++|||+|.+...-.... .+...++|.||+....
T Consensus 5 ~valvGNPNvGKTtlFN~LTG----------------~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~---- 64 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTG----------------ANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT---- 64 (653)
T ss_pred eEEEecCCCccHHHHHHHHhc----------------cCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCC----
Confidence 467799999999999999995 3456789999999875533222 2346899999997532
Q ss_pred CCCHHHH
Q 015085 387 RLTREEQ 393 (413)
Q Consensus 387 ~LS~ge~ 393 (413)
..|.+|+
T Consensus 65 ~~S~DE~ 71 (653)
T COG0370 65 AYSEDEK 71 (653)
T ss_pred CCCchHH
Confidence 2366663
|
|
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.5e-05 Score=66.20 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=62.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.....+..+|.+++|+|+.+........+.+.+... + .|+++|+||+|+... ...+.++...
T Consensus 75 ~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~----------~-----~~~iiv~nK~Dl~~~---~~~~~~~~~~ 136 (168)
T cd04163 75 AAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS----------K-----TPVILVLNKIDLVKD---KEDLLPLLEK 136 (168)
T ss_pred HHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh----------C-----CCEEEEEEchhcccc---HHHHHHHHHH
Confidence 344456778999999999987444444554544321 2 289999999999742 2344555544
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..... ....++.+|++++.|++++++.|.+
T Consensus 137 ~~~~~---~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 137 LKELG---PFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred HHhcc---CCCceEEEEeccCCChHHHHHHHHh
Confidence 43332 2357899999999999999888743
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=73.83 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhh------cCCccccCCCC
Q 015085 381 PNQITTRLTREEQKLVNINKEL------KPRTYRIKVSL 413 (413)
Q Consensus 381 ~~~~~~~LS~ge~q~v~i~r~l------~~~~~~l~~~~ 413 (413)
.++....||+|++|++.+++++ .|+.+.+|+|+
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 3567889999999999999988 78999999884
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.7e-06 Score=83.36 Aligned_cols=57 Identities=32% Similarity=0.287 Sum_probs=42.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc--cccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~--~~~liDtpGl~~ 380 (413)
+|.+||.+|||||||||+|++.. ..++..|+||+..+........ ...++||||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k----------------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK----------------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc----------------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 68899999999999999998421 2457789999876554322322 378999999974
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-06 Score=80.40 Aligned_cols=55 Identities=33% Similarity=0.352 Sum_probs=38.1
Q ss_pred EEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc------------------cccc
Q 015085 310 WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP------------------AQAK 371 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~------------------~~~~ 371 (413)
.+||.+|||||||||+|++.. ..++.+|+||++...-..... ....
T Consensus 2 givG~PN~GKSTLfn~Lt~~~----------------~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~ 65 (274)
T cd01900 2 GIVGLPNVGKSTLFNALTKAG----------------AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIE 65 (274)
T ss_pred eEeCCCCCcHHHHHHHHhCCC----------------CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEE
Confidence 569999999999999999543 234566888866533111111 1368
Q ss_pred ccccccccC
Q 015085 372 LFDTPGLLH 380 (413)
Q Consensus 372 liDtpGl~~ 380 (413)
++|+||+..
T Consensus 66 lvD~pGl~~ 74 (274)
T cd01900 66 FVDIAGLVK 74 (274)
T ss_pred EEECCCcCC
Confidence 999999984
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=3e-05 Score=78.63 Aligned_cols=107 Identities=22% Similarity=0.278 Sum_probs=63.0
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
+..++.++++.++++++|+|+..+... ....+..++... ......+ .+ +|+++|+||+|++.. ..+.+
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL-~~~~~~L-~~-----kP~IlVlNKiDl~~~----~el~~ 295 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINEL-EKYSPKL-AE-----KPRWLVFNKIDLLDE----EEAEE 295 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHH-Hhhhhhh-cC-----CCEEEEEeCCccCCh----HHHHH
Confidence 445566678899999999998844211 112222222211 0000000 12 389999999999744 22333
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.++.+.+..+. ...|+.+||+++.|+++|++.|.+++..
T Consensus 296 ~l~~l~~~~~~--~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 296 RAKAIVEALGW--EGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHHHhCC--CCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 33333333221 1258999999999999999988766543
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-05 Score=70.82 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=58.2
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH--
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW-- 265 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~-- 265 (413)
+.....+..+|.+++|+|+.+...........+... .+ .|+++|+||+|+..........+++
T Consensus 83 ~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~----------~~-----~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 83 RTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI----------LC-----KKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred HHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH----------cC-----CCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 344455667899999999987543222111111111 12 2899999999997432111112222
Q ss_pred -HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 -VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 -~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+...+...+. ....++.+||+++.|+++|++.+.+..
T Consensus 148 ~l~~~~~~~~~-~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 148 KLQKTLEKTRF-KNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHhcCc-CCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 2111211121 124689999999999999999886544
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=68.50 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=54.8
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+............+.. .++ |+++|+||+|+.... ..... .+..
T Consensus 85 ~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~~--~~~~~---~~~~ 144 (179)
T cd01890 85 SRSLAACEGALLLVDATQGVEAQTLANFYLALE----------NNL-----EIIPVINKIDLPSAD--PERVK---QQIE 144 (179)
T ss_pred HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----------cCC-----CEEEEEECCCCCcCC--HHHHH---HHHH
Confidence 345567899999999987543222111111111 132 899999999986431 11111 1222
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+. ....++.+||++|.|+++|++.+.+.
T Consensus 145 ~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 145 DVLGL-DPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHhCC-CcccEEEeeccCCCCHHHHHHHHHhh
Confidence 23332 22358999999999999999888543
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-06 Score=83.45 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=61.6
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC--------CeeeeEeecccccc-ccccccccc
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG--------TTLGIVRVEGVLPA-QAKLFDTPG 377 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg--------tT~~~i~~~~~l~~-~~~liDtpG 377 (413)
++++ +|.||.||||||++|+|.++|+.|. .+..+.+|.+|. +.+..+.-.. .+. ..-.|-+-+
T Consensus 368 eiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~lnVSykpqkispK~~~tvR~ll~~kI-r~ay~~pqF~~dv 440 (592)
T KOG0063|consen 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLNVSYKPQKISPKREGTVRQLLHTKI-RDAYMHPQFVNDV 440 (592)
T ss_pred eeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccceeccccccCccccchHHHHHHHHh-HhhhcCHHHHHhh
Confidence 3444 9999999999999999999998883 445666665543 2211110000 000 000011111
Q ss_pred c-----c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 378 L-----L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 378 l-----~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
+ . .-++-...|||||+||++++-.+ -...|.+++|
T Consensus 441 mkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 441 MKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred hhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 1 1 13577889999999999999888 4588888876
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=81.14 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=58.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
..++..+|++++|+|+.+.....+..+...+.. .++ |+|+|+||+||.... ..........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~----------~~~-----piIiV~NK~Dl~~~~----~~~~~~~~i~ 348 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE----------AGR-----ALVLAFNKWDLVDED----RRYYLEREID 348 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEECcccCChh----HHHHHHHHHH
Confidence 345678999999999987643333333333221 133 899999999997531 1111111111
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.........++.+||++|.|++++++.+.+..
T Consensus 349 ~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 349 RELAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred HhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 112211235688999999999999999986654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.2e-05 Score=80.32 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=50.2
Q ss_pred ceEEEeEEEeecCc-chhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccc
Q 015085 279 TKLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~ 349 (413)
..|.+....-.|+. ..++..+....+.+..+.++|++|+||||+++.|.+.+.+.+|.+..++..+..++.
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq 332 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHH
Confidence 34666666666654 457777733333444566699999999999999999999999987765555544443
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.8e-05 Score=69.51 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRL 388 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~L 388 (413)
.+++|+||+|||+++.+|.-...-.+-..... ..+........+|.+...+.+.+ .....+ ........-|
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~f--~~~~~~------~~~~~~~~~L 95 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG-SLLFLAGGGVKAGINSASVEITF--DKSYFL------VLQGKVEQIL 95 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCcccccccCc-chhhhcccccCCCCceEEEEEEE--ECceEE------ecCCcCcccC
Confidence 45699999999999999874431100000000 00000011122344434444322 111111 1122333349
Q ss_pred CHHHHHHHHHhhhh------cCCccccCCCC
Q 015085 389 TREEQKLVNINKEL------KPRTYRIKVSL 413 (413)
Q Consensus 389 S~ge~q~v~i~r~l------~~~~~~l~~~~ 413 (413)
|+||+|++.+++++ .++.+.+|+|.
T Consensus 96 S~Ge~~r~~Laral~~~~~~~p~llilDEp~ 126 (178)
T cd03239 96 SGGEKSLSALALIFALQEIKPSPFYVLDEID 126 (178)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 99999999999987 57888888874
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=1e-05 Score=81.55 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc------------------cc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL------------------PA 368 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l------------------~~ 368 (413)
..+.+||.+|||||||||+|.+.. ..++++|+||++...-.... +.
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~----------------~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~a 85 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQ----------------VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPA 85 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCc----------------ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCC
Confidence 367889999999999999998432 34567788887654322111 12
Q ss_pred cccccccccccC
Q 015085 369 QAKLFDTPGLLH 380 (413)
Q Consensus 369 ~~~liDtpGl~~ 380 (413)
...++||||+..
T Consensus 86 qi~lvDtpGLv~ 97 (390)
T PTZ00258 86 QLDITDIAGLVK 97 (390)
T ss_pred CeEEEECCCcCc
Confidence 368999999985
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=66.42 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=53.2
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|++++|+|+.+... ...+...+.. .+ .|+++|+||+|+..... +..+.....+..+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~----------~~-----~~~iiv~NK~Dl~~~~~----~~~~~~~~~~~~~ 131 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE----------LG-----LPVVVALNMIDEAEKRG----IKIDLDKLSELLG 131 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH----------cC-----CCEEEEEehhhhccccc----chhhHHHHHHhhC
Confidence 57899999999987432 1122222211 13 38999999999975421 2222222333333
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+|+.++.|++++++.+.++
T Consensus 132 ----~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 132 ----VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ----CCeEEEEccCCCCHHHHHHHHHHH
Confidence 368999999999999998887543
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=79.57 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=66.7
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
.++.-.+|++..++++|+|+||+|++......+..+.+.+.. + +|+++|+||+||..+... ..
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~-----------~-----~~~i~v~NK~DL~~~~~~-~~ 344 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPK-----------K-----KPIIVVLNKADLVSKIEL-ES 344 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhccc-----------C-----CCEEEEEechhccccccc-ch
Confidence 344455889999999999999999998655555555552221 2 389999999999865321 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. .+ . .-..++.+|++++.|++.|.+.|.++..
T Consensus 345 ~-~~-------~---~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 345 E-KL-------A---NGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred h-hc-------c---CCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 1 11 0 1124889999999999999999966543
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.1e-05 Score=79.53 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCc-----hHHHHHHhhhhHhHh-----HHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSF-----PRKVAKMVSDTAEEN-----ERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~-----~~~l~~~l~~~~~~~-----~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+...+.+.++.+++||||||+++..... ...+.+.|..+.... ...+ .+ +|+|+|+||+|+...
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l-~~-----kP~IVVlNKiDL~da 299 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDL-AE-----RPRLVVLNKIDVPDA 299 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhh-cC-----CCEEEEEECccchhh
Confidence 4455666778899999999998643111 112222222110000 0000 12 389999999998633
Q ss_pred CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+.++++..+...+ ..|+.+||+++.|+++|+..|.++.
T Consensus 300 ----~el~e~l~~~l~~~g----~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 300 ----RELAEFVRPELEARG----WPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----HHHHHHHHHHHHHcC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 223334443343333 3699999999999999988886554
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.5e-05 Score=73.17 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=37.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||+|+|+|...+..|... .. ...+|.....+.........++||||+..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~----------~~-~~~~t~~~~~~~~~~~~~l~l~DtpG~~~ 64 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAP----------TG-VVETTMKRTPYPHPKFPNVTLWDLPGIGS 64 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccc----------cC-ccccccCceeeecCCCCCceEEeCCCCCc
Confidence 4778999999999999999987655545211 11 11223222222111123578999999863
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1e-05 Score=90.26 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=86.7
Q ss_pred eEEEeEEEeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc--------c
Q 015085 280 KLHFVSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT--------E 349 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t--------~ 349 (413)
.++.-..++.|+... .++.+ ++..++|++.. .|+|||||||+||+|.|...+++|++......+..-+ .
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~l-s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGL-SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhhhhcce-EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 455555666777665 66666 66677778777 9999999999999999999999997442211111000 0
Q ss_pred cCCCC--------CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 350 APVPG--------TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 350 s~~pg--------tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..-|. |.++.+.+...+.+ ..++++..|+. ..++.+..+|||.++|+..+-++ .|...-|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 00111 11222222111111 13567778886 45677999999999999988888 6788888
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|.
T Consensus 723 DEPs 726 (885)
T KOG0059|consen 723 DEPS 726 (885)
T ss_pred cCCC
Confidence 8873
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.8e-05 Score=67.85 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=61.8
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
-..+++|+|++.++...+.++.+++... +. |+++|+||+|.++... ...-+....+..+..
T Consensus 107 L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i-----~~~vv~tK~DKi~~~~----~~k~l~~v~~~l~~~ 167 (200)
T COG0218 107 LKGVVLLIDARHPPKDLDREMIEFLLEL----------GI-----PVIVVLTKADKLKKSE----RNKQLNKVAEELKKP 167 (200)
T ss_pred heEEEEEEECCCCCcHHHHHHHHHHHHc----------CC-----CeEEEEEccccCChhH----HHHHHHHHHHHhcCC
Confidence 4678999999999888888899988764 43 8999999999997532 211122222222221
Q ss_pred ccce--EEEeEEEeecCcchhccchhhhc
Q 015085 277 KITK--LHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 277 ~~~~--V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... +++.|+.++.|+++|...|.+..
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHh
Confidence 2222 88999999999999988885543
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.2e-05 Score=71.03 Aligned_cols=56 Identities=38% Similarity=0.296 Sum_probs=35.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~-~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|+|.+... .++..+++|.+....... -. ....++||||+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~----------------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP----------------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLI 59 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc----------------cccCCCccccCCcceEEEcCCCCeEEEEecCccc
Confidence 578899999999999999985321 223344555432111101 11 256799999984
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.1e-05 Score=80.62 Aligned_cols=57 Identities=32% Similarity=0.349 Sum_probs=39.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc------------------ccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL------------------PAQ 369 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l------------------~~~ 369 (413)
.+.+||.+|||||||||+|++.. ..++.+|+||++...-.... +..
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~~~----------------~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~ 67 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTKAG----------------AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPAT 67 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------CeecccccccccceEEEEEeccccchhhHHhcCCccccCce
Confidence 47779999999999999999532 23456788887653211111 123
Q ss_pred ccccccccccC
Q 015085 370 AKLFDTPGLLH 380 (413)
Q Consensus 370 ~~liDtpGl~~ 380 (413)
..++|+||+..
T Consensus 68 i~lvD~pGL~~ 78 (364)
T PRK09601 68 IEFVDIAGLVK 78 (364)
T ss_pred EEEEECCCCCC
Confidence 68999999985
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.3e-05 Score=78.00 Aligned_cols=59 Identities=39% Similarity=0.410 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
|.+.++|.+|||||||+|.|+|.. ...+++.++||+..+....... ....++||||+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~---------------~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQK---------------ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK 65 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCc---------------eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC
Confidence 567779999999999999999532 1234566777776543211112 3578999999864
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.9e-05 Score=65.49 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=54.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....+|++++|+|+.+..........+++.. .++ |+++|+||+|+... ....+...+......
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~----------~~~-----p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~ 132 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKA----------ANV-----PFIVALNKIDKPNA--NPERVKNELSELGLQ 132 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHH----------cCC-----CEEEEEEceecccc--cHHHHHHHHHHhhcc
Confidence 4467899999999987542222222222221 133 89999999998643 122222222211110
Q ss_pred c--CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 D--GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~--g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
. .......++.+|+.++.|+++|++.|.++
T Consensus 133 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 133 GEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred ccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 0 01112468999999999999999888554
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=62.83 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=56.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+........+...... .+ .|+++|+||+|+... .....+.....
T Consensus 70 ~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~----------~~-----~~~ivv~nK~D~~~~----~~~~~~~~~~~ 130 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRE----------RG-----KPVLLVLNKIDLLPE----EEEEELLELRL 130 (163)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh----------cC-----CeEEEEEEccccCCh----hhHHHHHHHHH
Confidence 345567899999999998654433331221111 12 389999999999854 23333321111
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
..........++.+|+.++.|+.++++.+.
T Consensus 131 ~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~ 160 (163)
T cd00880 131 LILLLLLGLPVIAVSALTGEGIDELREALI 160 (163)
T ss_pred hhcccccCCceEEEeeeccCCHHHHHHHHH
Confidence 111111235688999999999999888774
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.2e-05 Score=66.27 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=57.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..++++++|+|+.+.. + ......++....... ...+ .|+++|+||+|+... .....+..++....+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~-~-~~~~~~~~~~~~~~~---~~~~-----~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~ 137 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRE-R-FEESKSALEKVLRNE---ALEG-----VPLLILANKQDLPDA-LSVEEIKEVFQDKAE 137 (167)
T ss_pred HHhCCCCEEEEEEECchHH-H-HHHHHHHHHHHHhCh---hhcC-----CCEEEEEEccccccC-CCHHHHHHHhccccc
Confidence 4467889999999998743 2 222222322211000 0012 389999999998654 233445555543322
Q ss_pred HcCCCccceEEEeEEEeecCcchhccch
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
..+. ....++.+||++|.|++++++.|
T Consensus 138 ~~~~-~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 138 EIGR-RDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred cccC-CceEEEEeeCCCCcCHHHHHHHH
Confidence 2221 12368999999999999998876
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=72.78 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=64.4
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
++.++.+.++++.+++||||+...+.....+-.+.+..........+ .+ +|.++|+||+|++.. .+.++.+
T Consensus 227 LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L-~~-----K~~ivv~NKiD~~~~---~e~~~~~ 297 (369)
T COG0536 227 LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL-AE-----KPRIVVLNKIDLPLD---EEELEEL 297 (369)
T ss_pred ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh-cc-----CceEEEEeccCCCcC---HHHHHHH
Confidence 55566777888999999999987654322221222221111111111 23 389999999996533 3455555
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+...+..+.. ....+||.++.|++.|+..+.++.
T Consensus 298 ~~~l~~~~~~~---~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 298 KKALAEALGWE---VFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred HHHHHHhcCCC---cceeeehhcccCHHHHHHHHHHHH
Confidence 55555444421 122299999999999998886554
|
|
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.7e-05 Score=65.48 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-CCCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-SSLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~~~~~~~l~~~~~~~~ 270 (413)
..++.+|.+++|+|+.+.. ++ ..+..+...... ..........|+++|+||+|+.. .....+....|.+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~-~~-~~~~~~~~~~~~-----~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--- 137 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPK-SF-ESLDSWRDEFLI-----QASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ--- 137 (172)
T ss_pred HHhcCCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hcCccCCCCceEEEEEECcccccccccCHHHHHHHHH---
Confidence 4567789999999998743 21 222222211100 00000011248999999999984 3333444444432
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ...++.+|++++.|++++++.+.+..
T Consensus 138 -~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 138 -SNG---NIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -HcC---CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 332 24689999999999999998885543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=6e-05 Score=82.42 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=60.7
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...+++.+|++++|+|+.+.....+..+.+.+.. .++ |+++|+||+||.+.. ..+.+.+..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~----------~~~-----piIiV~NK~DL~~~~----~~~~~~~~~ 586 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD----------AGR-----ALVLVFNKWDLMDEF----RRQRLERLW 586 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEEchhcCChh----HHHHHHHHH
Confidence 3456788999999999987644333333333221 133 899999999997531 111221111
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
...........++.+||++|.|+++|++.+.+...
T Consensus 587 ~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 587 KTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred HHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111123457889999999999999998866543
|
|
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=67.44 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=52.3
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC----CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh---HHH
Q 015085 190 LMSASGARSVVLMVVDAADFDG----SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP---TRF 262 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~----s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~---~~l 262 (413)
....+..+|++++|||+.+... .......+.+... . ..+ .+++++|+||+|+....... ..+
T Consensus 94 ~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~------~~~----~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (219)
T cd01883 94 MITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-R------TLG----VKQLIVAVNKMDDVTVNWSEERYDEI 162 (219)
T ss_pred HHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-H------HcC----CCeEEEEEEccccccccccHHHHHHH
Confidence 3455677999999999987421 1111111111100 0 012 13799999999997431111 233
Q ss_pred HHHHHHHHHHcCCC-ccceEEEeEEEeecCcch
Q 015085 263 EHWVRQRAREDGIS-KITKLHFVSAVKNWGLKS 294 (413)
Q Consensus 263 ~~~~~~~~~~~g~~-~~~~V~~vSa~~~~Gi~~ 294 (413)
.+.++..++..+.. .-..++.+||.+|.|+++
T Consensus 163 ~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 163 KKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 33333344444431 124689999999999874
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.8e-05 Score=71.08 Aligned_cols=54 Identities=26% Similarity=0.320 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
..+.++|.+|||||||+|.|.+.. ..++..||+|.....+. .. ...++||||+.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~----------------~~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 63 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKK----------------VRVGKRPGVTRKPNHYD--WG-DFILTDLPGFG 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCceeeCceEEe--ec-ceEEEeCCccc
Confidence 367889999999999999998532 12335578887665442 22 57899999973
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.8e-05 Score=69.06 Aligned_cols=58 Identities=29% Similarity=0.347 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++.++|.+|+|||||+|.|.+... ...++..+|+|.+...+. .+....++||||+..
T Consensus 19 ~~i~ivG~~~~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~~~liDtpG~~~ 76 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKK--------------LARTSKTPGRTQLINFFE--VNDGFRLVDLPGYGY 76 (179)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCcceEEEEEE--eCCcEEEEeCCCCcc
Confidence 3678899999999999999995320 112345677887654442 234678999999753
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.7e-05 Score=69.75 Aligned_cols=57 Identities=30% Similarity=0.396 Sum_probs=39.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|.+|+|||||+|.|++... ....++.+|+|.+..... ......++||||+.
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~ 81 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNRKN--------------LARTSKTPGRTQLINFFE--VNDKLRLVDLPGYG 81 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCC--------------cccccCCCCceeEEEEEe--cCCeEEEeCCCCCC
Confidence 3688899999999999999996310 112244567776654332 23467899999974
|
|
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=67.06 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=54.5
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-hHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~-~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+........+..++... +. +++|+|+||+|+...... ...+..-++.+
T Consensus 95 ~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~----------~~----~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 95 VTGASTADLAILLVDARKGVLEQTRRHSYILSLL----------GI----RHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc----------CC----CcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 3456789999999999875433333333333211 21 357889999999743110 11222223334
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
++..+. ....++.+||+++.|+.+...
T Consensus 161 ~~~~~~-~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 161 AAKLGI-EDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHHcCC-CCceEEEEeCCCCCCCccCCC
Confidence 444443 123589999999999887654
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.7e-05 Score=76.28 Aligned_cols=87 Identities=32% Similarity=0.428 Sum_probs=54.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+...+..+|+|++|+|++++..... ..+.+++... +. ...|+++|+||+|+.+. ..+..+
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----------~~--~~~piIlV~NK~Dl~~~----~~v~~~--- 322 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEEL----------GA--EDIPQLLVYNKIDLLDE----PRIERL--- 322 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----------cc--CCCCEEEEEEeecCCCh----HhHHHH---
Confidence 4445778999999999988643211 1222333321 10 12389999999999743 222211
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. + ...++.+||+++.|+++|++.|.+
T Consensus 323 --~~-~---~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 323 --EE-G---YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred --Hh-C---CCCEEEEEccCCCCHHHHHHHHHh
Confidence 11 1 135789999999999999988743
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=70.38 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=67.0
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+.....++-|+-.+.+.++++..++||||+..+..- -+..+..+..+. + .|..+. ..+|.++|+||+|+...
T Consensus 255 I~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~EL-e----~yek~L--~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 255 IEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEEL-E----LYEKGL--ADRPALIVANKIDLPEA 327 (366)
T ss_pred cccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHH-H----HHhhhh--ccCceEEEEeccCchhH
Confidence 344455566777788889999999999999876221 122222222211 1 111121 22489999999998632
Q ss_pred CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 256 SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 256 ~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
-+.++.++.+... -..|+.+||+.+.|..+|++.+.
T Consensus 328 ------e~~~l~~L~~~lq---~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 328 ------EKNLLSSLAKRLQ---NPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred ------HHHHHHHHHHHcC---CCcEEEeeeccccchHHHHHHHh
Confidence 1222333333332 13589999999999999998874
|
|
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.3e-05 Score=72.78 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=70.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC---------
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS--------- 258 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~--------- 258 (413)
+..+.++..||+|+.|+|+.+.-..+.+.+++.+..+ .. .|-|+|+||+|.+.....
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y---------s~-----ips~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY---------SK-----IPSILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH---------hc-----CCceeeccchhcchhhhHHhhhHHhcc
Confidence 4556778889999999999975445567777777654 11 288999999998754210
Q ss_pred hHH----HHHHHHHHH---------HHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 259 PTR----FEHWVRQRA---------REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 259 ~~~----l~~~~~~~~---------~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
... ..+|...+. ...|+..|..||++||.+|.|+++|.+.|...+..+
T Consensus 213 ~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 213 NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 001 112222111 112455678899999999999999999987666543
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=97.77 E-value=3e-05 Score=67.00 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=39.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
.+.++|.+|+|||||+|+|.+.. .......+++|.+.........+ ...++||||+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 61 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD---------------RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRE 61 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc---------------eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCC
Confidence 46779999999999999999532 11223456777665443222222 467999999864
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=64.83 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=50.9
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~ 276 (413)
+|++++|+|+.+...........++.... ....+ .|+++|+||+|+.... .+.. .....+.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~-----~~~~~-----~pvilv~NK~Dl~~~~----~~~~-~~~~~~~---- 140 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIK-----PLFKN-----KPVIVVLNKIDLLTFE----DLSE-IEEEEEL---- 140 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHH-----hhcCc-----CCeEEEEEccccCchh----hHHH-HHHhhhh----
Confidence 58899999998754311122222222110 00012 3899999999997542 1211 1122221
Q ss_pred ccceEEEeEEEeecCcchhccchhh
Q 015085 277 KITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 277 ~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
....++.+||+++.|++++++.+..
T Consensus 141 ~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 141 EGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred ccCceEEEEecccCCHHHHHHHHHH
Confidence 1246889999999999999988744
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=79.75 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred hccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCC--CCCeeeeEeecccccc--
Q 015085 295 LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGTTLGIVRVEGVLPA-- 368 (413)
Q Consensus 295 Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~--pgtT~~~i~~~~~l~~-- 368 (413)
++..+ .+..+.|. ..++||||||||+|+++|.|+-+...|....- ...+-++++-+. -||-+|.+-++-..+.
T Consensus 497 vv~~L-tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~ 575 (728)
T KOG0064|consen 497 LVPKL-TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMK 575 (728)
T ss_pred eecce-eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHH
Confidence 44444 44445554 45599999999999999999987766642211 111223333322 3455565544321100
Q ss_pred --c------ccccccc----------cccCCCCCCCCCCHHHHHHHHHhhhh
Q 015085 369 --Q------AKLFDTP----------GLLHPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 369 --~------~~liDtp----------Gl~~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
+ ..+++.. |+..-...-+.|||||+||+.+||.+
T Consensus 576 ~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~ 627 (728)
T KOG0064|consen 576 RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMF 627 (728)
T ss_pred hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHH
Confidence 0 1122222 22211233578999999999999988
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.4e-06 Score=74.20 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=52.0
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccccc------------ccccCCCCCeeeeEeecc---cccc-
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------LTEAPVPGTTLGIVRVEG---VLPA- 368 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------~t~s~~pgtT~~~i~~~~---~l~~- 368 (413)
.|+++ +|||||+|||||+-.|+|+. +.+|++...+..+.+ +.....|-...-...+.. ....
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~ 102 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTR 102 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHH
Confidence 45554 49999999999999999987 556754422222111 111111111100000000 0000
Q ss_pred ---ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh
Q 015085 369 ---QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 369 ---~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l 402 (413)
...+-+.-++. +..+..+.|||||.|||.++-..
T Consensus 103 a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 103 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEE
Confidence 01233344554 34688999999999999877654
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=83.84 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=47.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHPNQITT 386 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~~~~~~ 386 (413)
.+.++|.+|||||||+|.|+|.. ..++++||+|.+.....+... ....++||||+........
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~----------------~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~ 68 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS 68 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccc
Confidence 57779999999999999998532 134678999987654433232 2578999999975433323
Q ss_pred CCCHHHH
Q 015085 387 RLTREEQ 393 (413)
Q Consensus 387 ~LS~ge~ 393 (413)
..|.+|+
T Consensus 69 ~~s~~E~ 75 (772)
T PRK09554 69 QTSLDEQ 75 (772)
T ss_pred cccHHHH
Confidence 3344553
|
|
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.7e-05 Score=72.45 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
+++++|.+|+||||++|+|+|....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f 26 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVF 26 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-S
T ss_pred EEEEECCCCCCHHHHHHHHhcccce
Confidence 4778999999999999999976643
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.7e-05 Score=74.99 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
...+.++|.+|+||||++|+|+|..
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467889999999999999999654
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=65.51 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=48.6
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...+.+++|+|+..........+.+++... ++ |+++|+||+|+..... .......++..++..+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~----------~~-----pviiv~nK~D~~~~~~-~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRER----------GI-----PVLIVLTKADKLKKSE-LNKQLKKIKKALKKDA 162 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHc----------CC-----CEEEEEECcccCCHHH-HHHHHHHHHHHHhhcc
Confidence 346899999999864433333444444321 33 8999999999974321 1112222333333332
Q ss_pred CCccceEEEeEEEeecCcc
Q 015085 275 ISKITKLHFVSAVKNWGLK 293 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~ 293 (413)
....++.+||++|+|++
T Consensus 163 --~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 --DDPSVQLFSSLKKTGID 179 (179)
T ss_pred --CCCceEEEECCCCCCCC
Confidence 11379999999999874
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=67.10 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=52.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch---HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFP---RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~---~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
..+..++++++|+|+.+.. ++. ..+..++... ...+ .|+++|+||+|+.... ....+...+
T Consensus 62 ~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~-------~~~~-----~piiiv~nK~Dl~~~~-~~~~i~~~~-- 125 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRD-RLGTAKEELHAMLEEE-------ELKG-----AVLLVFANKQDMPGAL-SEAEISEKL-- 125 (158)
T ss_pred HHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhch-------hhcC-----CcEEEEEeCCCCCCCC-CHHHHHHHh--
Confidence 4567899999999998742 111 1122222110 0012 3999999999986432 122221111
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccch
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
...........++.+||+++.|++++++.+
T Consensus 126 -~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 126 -GLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred -CccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 000000011358999999999999998876
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=66.37 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=53.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCc-----------hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 193 ASGARSVVLMVVDAADFDGSF-----------PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~-----------~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
.+..+++|++|+|+.++.... +..+.+.+.. .+ .|+++|+||+|+.... .+.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~-----~p~iiv~NK~Dl~~~~--~~~ 149 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----------LG-----IPPIVAVNKMDKIKNR--DEV 149 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----------cC-----CCeEEEEECccccCcH--HHH
Confidence 455678999999997653210 1122222221 12 3899999999986542 122
Q ss_pred HHHHHHHHHHHcCCCcc-----ceEEEeEEEeecCcchhccchhhhc
Q 015085 262 FEHWVRQRAREDGISKI-----TKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~-----~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++ .+..+.... ..++.+||++| |++++++.|.+..
T Consensus 150 ~~~~----~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 150 LDEI----AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred HHHH----HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 2333 222332100 24789999999 9999998886543
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=78.21 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=62.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|||+.+..+....+...++... +. +.+++|+||+|+.++. ....+.+-++..
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l----------gi----~~iIVVlNKiDlv~~~-~~~~v~~ei~~~ 132 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT----------GN----PMLTVALTKADRVDEA-RIAEVRRQVKAV 132 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEECCccCCHH-HHHHHHHHHHHH
Confidence 34556778999999999876554444444444322 22 2468999999997431 111122222233
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+...++ ....++.+||.+|.|+++|++.|.++..
T Consensus 133 l~~~~~-~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 133 LREYGF-AEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHhcCC-CCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 333332 1246899999999999999998865543
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=77.88 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=60.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|||+.+..+....+...++... +. +++++|+||+|+.+.. ..+...+.++.+
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l----------gi----~~iIVVlNK~Dlv~~~-~~~~~~~ei~~~ 131 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL----------GI----PHTIVVITKADRVNEE-EIKRTEMFMKQI 131 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 34456779999999999885443222223332211 33 2399999999997531 111233344444
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
++..+......++.+||++|.|++++.+.+.++
T Consensus 132 l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 444432212468999999999999888777543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.6e-05 Score=66.38 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=35.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHc--cCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK--SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g--~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
++.++|.+|+|||||+|.|.+ .... .++.+++|.....+ .......++||||+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~----------------~~~~~~~t~~~~~~--~~~~~~~~~D~~g~~ 56 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLAR----------------TSKTPGKTQLINFF--NVNDKFRLVDLPGYG 56 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceee----------------ecCCCCcceeEEEE--EccCeEEEecCCCcc
Confidence 367899999999999999993 2221 22334555443322 233467889999974
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=67.24 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-CCCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-SSLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~~~~~~~l~~~~~~~~ 270 (413)
..+..++.+++|+|+.+.. ++ ..+..++... ... ..+.. ....|+++|+||+|+.. .....+.+.+|.
T Consensus 69 ~~~~~a~~~ilv~D~t~~~-s~-~~~~~~~~~i-~~~-~~~~~---~~~~piilv~NK~Dl~~~~~~~~~~~~~~~---- 137 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPS-TF-EAVLKWKADL-DSK-VTLPN---GEPIPCLLLANKCDLKKRLAKDGEQMDQFC---- 137 (201)
T ss_pred HHhCCCCEEEEEEECCCHH-HH-HHHHHHHHHH-HHh-hcccC---CCCCcEEEEEECCCcccccccCHHHHHHHH----
Confidence 3467889999999998742 22 2233333211 000 00000 11248999999999974 233344455544
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ +..++.+||+++.|++++++.|.+.
T Consensus 138 ~~~~---~~~~~e~Sak~~~~v~e~f~~l~~~ 166 (201)
T cd04107 138 KENG---FIGWFETSAKEGINIEEAMRFLVKN 166 (201)
T ss_pred HHcC---CceEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333 2468899999999999999888543
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=76.04 Aligned_cols=100 Identities=10% Similarity=0.136 Sum_probs=59.3
Q ss_pred HHhhhcCCCcEEEEEEeCCCC-CCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~-~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.+...+..+|.+++|||+.+. .+....+...++... +. +++|+|+||+|+.+.... ....+.++
T Consensus 133 ~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l----------gi----~~iIVvlNKiDlv~~~~~-~~~~~ei~ 197 (460)
T PTZ00327 133 TMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM----------KL----KHIIILQNKIDLVKEAQA-QDQYEEIR 197 (460)
T ss_pred HHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc----------CC----CcEEEEEecccccCHHHH-HHHHHHHH
Confidence 344556678999999999874 332222222222211 22 378999999999753211 11112222
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+++.... ....++.+||.+|.|++.|++.|.+...
T Consensus 198 ~~l~~~~~-~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 198 NFVKGTIA-DNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHhhcc-CCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 23322111 2357999999999999999999964443
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.7e-05 Score=78.56 Aligned_cols=59 Identities=34% Similarity=0.404 Sum_probs=43.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc-cccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpGl~~ 380 (413)
-++.++|.+|||||||+|.|++.. ...++.+||||++.+.....+++ ...++||||+..
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~---------------~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQD---------------RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC---------------CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 367889999999999999999532 12245679999987654333332 357999999853
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=75.97 Aligned_cols=57 Identities=33% Similarity=0.316 Sum_probs=41.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-c-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-P-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~-~~~~liDtpGl~~ 380 (413)
+|.+||.+|||||||||+|++.. ..++.+|+||+....-.... + ....++|+||+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~----------------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ 218 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAK----------------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIE 218 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCC----------------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccC
Confidence 68999999999999999998421 23466788887664432222 1 2478999999863
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=97.71 E-value=4e-05 Score=73.54 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=32.9
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
++..|+.. .++....||+||+||+.++++|. ++.|.+|+|+
T Consensus 153 L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPt 200 (261)
T cd03271 153 LCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPT 200 (261)
T ss_pred HHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCC
Confidence 34456653 47888999999999999999995 3689999884
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=97.71 E-value=6e-05 Score=71.72 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=26.1
Q ss_pred CCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 383 QITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+....||+|++|++.+++++. ++.+.+|+|.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt 187 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVD 187 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccc
Confidence 334789999999999999984 7888888874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 413 | ||||
| 3ec1_A | 369 | Structure Of Yqeh Gtpase From Geobacillus Stearothe | 3e-25 | ||
| 3h2y_A | 368 | Crystal Structure Of Yqeh Gtpase From Bacillus Anth | 1e-24 |
| >pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG) Length = 369 | Back alignment and structure |
|
| >pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis With Dgdp Bound Length = 368 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 203 bits (517), Expect = 7e-62
Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 79/327 (24%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENE 143
C GCG +Q NPK+ GY P L
Sbjct: 7 CIGCGAAIQFENPKNAGYA--PKSVL---------------------------------- 30
Query: 144 TSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMV 203
+K + V+C RC L+HY +V+DV + D DF + R S +++V+ +
Sbjct: 31 ----EKDAEEVICQRCFRLKHYNEVQDVPL----DDDDFLSMLHRIGES----KALVVNI 78
Query: 204 VDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE 263
VD DF+GSF + + +D ++LV K DLLP S+ +
Sbjct: 79 VDIFDFNGSFIPGLPRFAADN-----------------PILLVGNKADLLPRSVKYPKLL 121
Query: 264 HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323
W+R+ A E G+ + + VSA K G+ +++ + + G+V+ +G N GKST +
Sbjct: 122 RWMRRMAEELGLCPV-DVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVGKSTFI 179
Query: 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQ 383
N I + +T + PGTTL ++ + L + A L+DTPG+++ +Q
Sbjct: 180 NRIIEEATGKGN----------VITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQ 227
Query: 384 ITTRLTREEQKLVNINKELKPRTYRIK 410
+ + + K++ +E+ PR Y++
Sbjct: 228 MAHFVDARDLKIITPKREIHPRVYQLN 254
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 2e-60
Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 80/327 (24%)
Query: 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENE 143
C GCGV +Q + GY P+
Sbjct: 7 CIGCGVEIQTEDKNEVGYA--PAS------------------------------------ 28
Query: 144 TSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMV 203
++ V+C RC L+HY +++DV++ D DF R L + ++V+ +
Sbjct: 29 ----SLEKEQVICQRCFRLKHYNEIQDVSL----TDDDFL----RILNGIGKSDALVVKI 76
Query: 204 VDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE 263
VD DF+GS+ + + V + +V+LV K DL+P S+ + +
Sbjct: 77 VDIFDFNGSWLPGLHRFVGNN-----------------KVLLVGNKADLIPKSVKHDKVK 119
Query: 264 HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323
HW+R A++ G+ K + +SA K G+ L D + G + +V+ +G N GKST +
Sbjct: 120 HWMRYSAKQLGL-KPEDVFLISAAKGQGIAELADAIEYYRGGK-DVYVVGCTNVGKSTFI 177
Query: 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQ 383
N + K E +N++ T + PGTTL ++ + L ++ L+DTPG+++ +Q
Sbjct: 178 NRMIKEFS------DETENVI---TTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQ 226
Query: 384 ITTRLTREEQKLVNINKELKPRTYRIK 410
+ + ++ KL+ KE+KP +++
Sbjct: 227 MAHYVGKQSLKLITPTKEIKPMVFQLN 253
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 21/86 (24%)
Query: 303 AGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LG 358
AG R + G +N GKS+ +NA+ G+ +IVS GTT
Sbjct: 31 AGFRRYIVVAGRRNVGKSSFMNALV----------GQNVSIVS-----DYAGTTTDPVYK 75
Query: 359 IVRVEGVLPAQAKLFDTPGLLHPNQI 384
+ + + L DTPGL ++
Sbjct: 76 SMELHPI--GPVTLVDTPGLDDVGEL 99
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 40/177 (22%), Positives = 61/177 (34%), Gaps = 64/177 (36%)
Query: 199 VVLMVVDA------ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252
+VL VVD D +A + R K +LV K +
Sbjct: 84 LVLFVVDGKRGITKED------ESLADFL--------R--KSTV-----DTILVANKAE- 121
Query: 253 LPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA- 311
+ FE V+ G + VSA N L ++++ ++ ++G
Sbjct: 122 -----NLREFEREVKPELYSLGFGEP---IPVSAEHNINLDTMLETIIKKLEEKGLDLES 173
Query: 312 ------------IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
+G N GKSTL NAI +E+ +VS P+PGTT
Sbjct: 174 KPEITDAIKVAIVGRPNVGKSTLFNAIL----------NKERALVS-----PIPGTT 215
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 40/158 (25%)
Query: 238 GNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLID 297
N PR+ +++ K D + W GI + +++V GL ++
Sbjct: 49 KNKPRI-MLLNKADKAD----AAVTQQWKE-HFENQGIRSL----SINSVNGQGLNQIVP 98
Query: 298 DVVDLAGKRGNVWA-------------IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344
++ ++ + IG N GKSTL+N +AK KNI
Sbjct: 99 ASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK------------KNIA 146
Query: 345 SHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPN 382
PG T V+ + + +L DTPG+L P
Sbjct: 147 K---TGDRPGITTSQQWVK--VGKELELLDTPGILWPK 179
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 49/294 (16%), Positives = 76/294 (25%), Gaps = 69/294 (23%)
Query: 142 NETSEVKKH----EKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGAR 197
N+ K+ +P + R AL K+V + G + SG
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLI----------D--G---VLGSGKT 164
Query: 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL 257
V L V + K+ W N V+ + L +
Sbjct: 165 WVALDVCLSYKVQCKMDFKI-------------FWL--NLKNCNSPETVLEMLQKLLYQI 209
Query: 258 SP---TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI-DDVVDLAGKRGNVWAIG 313
P +R +H + R I + S L L+ +V + A
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQN-------AKAWN 260
Query: 314 AQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI------VRVEGVLP 367
A N LL K V + H + P + R + LP
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LP 319
Query: 368 AQAKLFDTPGLL---------HPNQITTRLTREEQKLVNINK----ELKPRTYR 408
+ + P L KL I + L+P YR
Sbjct: 320 REVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 39/176 (22%), Positives = 57/176 (32%), Gaps = 68/176 (38%)
Query: 199 VVLMVVDA----ADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254
V++ +V+ D +VAK++ + K VVL V K+D
Sbjct: 85 VIIFMVNGREGVTAAD----EEVAKIL--------Y--RTKK-----PVVLAVNKLD--- 122
Query: 255 SSLSPTRFEHWVRQRAREDGISK-----ITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNV 309
I + + +S GL L+D V +
Sbjct: 123 -------------NTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET 169
Query: 310 WA---------IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT 356
IG N GKS+L+NA+ GEE+ IVS V GTT
Sbjct: 170 KYNEEVIQFCLIGRPNVGKSSLVNAML----------GEERVIVS-----NVAGTT 210
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 32/118 (27%)
Query: 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVW------AI-GAQNAGKSTLLN 324
E+ + ++ ++ L+S ++ ++D + G + I G NAGKSTLLN
Sbjct: 195 EEDVEFQSRDELTMQIET--LRSEVNRLIDSY-QHGRIVSEGVSTVIAGKPNAGKSTLLN 251
Query: 325 AIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR----VEGVLPAQAKLFDTPGL 378
+ G+E+ IVS +PGTT + + + +L DT GL
Sbjct: 252 TLL----------GQERAIVS-----HMPGTTRDYIEECFIHDKTM---FRLTDTAGL 291
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 30/98 (30%)
Query: 292 LKSLIDDVVDLAGKRGNVW------AI-GAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344
+ + I ++ +G + AI G N GKS+LLNA + ++ IV
Sbjct: 204 IAAEISQLLATK-DKGELLRTGLKVAIVGRPNVGKSSLLNAWS----------QSDRAIV 252
Query: 345 SHLTEAPVPGTTLGIVR----VEGVLPAQAKLFDTPGL 378
+ +PGTT +V V G+ ++ DT G+
Sbjct: 253 T-----DLPGTTRDVVESQLVVGGIP---VQVLDTAGI 282
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 30/98 (30%)
Query: 292 LKSLIDDVVDLAGKRGNVW------AI-GAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344
+K + + + A G + I G N GKSTLLN + E++ IV
Sbjct: 223 IKEKLTEELKKA-DAGILLNRGLRMVIVGKPNVGKSTLLNRLL----------NEDRAIV 271
Query: 345 SHLTEAPVPGTTLGIVR----VEGVLPAQAKLFDTPGL 378
+ +PGTT ++ + G+L ++ DT G+
Sbjct: 272 T-----DIPGTTRDVISEEIVIRGIL---FRIVDTAGV 301
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-06
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 22/71 (30%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR----VEGVLP 367
G NAGKS+LLNA+A G E IV+ + GTT ++R ++G+
Sbjct: 10 AGRPNAGKSSLLNALA----------GREAAIVT-----DIAGTTRDVLREHIHIDGMP- 53
Query: 368 AQAKLFDTPGL 378
+ DT GL
Sbjct: 54 --LHIIDTAGL 62
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 1e-05
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 21/75 (28%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367
+G N GKSTLLN + G + +I+S P GTT LG+ +
Sbjct: 16 VGKPNVGKSTLLNNLL----------GTKVSIIS-----PKAGTTRMRVLGVKNIPN--E 58
Query: 368 AQAKLFDTPGLLHPN 382
AQ DTPG+ P
Sbjct: 59 AQIIFLDTPGIYEPK 73
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 1e-05
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 22/75 (29%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367
+G N GKSTLLN + G + +S P P TT GI+
Sbjct: 13 VGKPNVGKSTLLNNLL----------GVKVAPIS-----PRPQTTRKRLRGILTEGR--- 54
Query: 368 AQAKLFDTPGLLHPN 382
Q DTPGL P
Sbjct: 55 RQIVFVDTPGLHKPM 69
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Length = 301 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301
V+V+ K+DL + + R E+ S + + SA G++ L +
Sbjct: 117 ETVMVINKMDLYDE-------DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEY--- 166
Query: 302 LAGKRGNVWAIGAQN-AGKSTLLNAIAKSVDA 332
L GK + + + GKS+LLNAI +
Sbjct: 167 LKGK---ISTMAGLSGVGKSSLLNAINPGLKL 195
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 9e-05
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 22/71 (30%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367
+G N GKSTLLN + G++ +I S TT +GI
Sbjct: 14 VGRPNVGKSTLLNKLL----------GQKISITS-----RKAQTTRHRIVGIHTEGA--- 55
Query: 368 AQAKLFDTPGL 378
QA DTPGL
Sbjct: 56 YQAIYVDTPGL 66
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 16/131 (12%)
Query: 258 SPTRFEHWVRQRAREDGISKITKLHFV-SAVKNWGLKSLIDDVVD----LAGKRGNVWAI 312
P+ F + ++ I L+ + ++ ++ + D + NV
Sbjct: 16 LPSSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVT 75
Query: 313 GAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372
G +GKS+ +N + RG EE+ + V T+ +
Sbjct: 76 GETGSGKSSFINTL-------RGIGNEEEGA----AKTGVVEVTMERHPYKHPNIPNVVF 124
Query: 373 FDTPGLLHPNQ 383
+D PG+ N
Sbjct: 125 WDLPGIGSTNF 135
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301
+ ++ +TK+DL+ + + + + R G ++ S+ L +I
Sbjct: 119 QPIICITKMDLIEDQDTEDTIQAYA-EDYRNIGY----DVYLTSSKDQDSLADIIPH--- 170
Query: 302 LAGKRGNVWAIGAQN-AGKSTLLNAIAKSVDA 332
K Q+ GKS+LLNAI+ +
Sbjct: 171 FQDK---TTVFAGQSGVGKSSLLNAISPELGL 199
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301
++++ K+D+ + WV + ++ G I + K L+ +
Sbjct: 48 ETIILLNKVDIAD----EKTTKKWV-EFFKKQGKRVI----TTHKGE--PRKVLLKKL-- 94
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR 361
+ V +G N GKST++N + K + PG T GI
Sbjct: 95 SFDRLARVLIVGVPNTGKSTIINKLKG------------KRAS---SVGAQPGITKGIQW 139
Query: 362 VEGVLPAQAKLFDTPGLLHPN 382
L K+ DTPG+L+ N
Sbjct: 140 FS--LENGVKILDTPGILYKN 158
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 43/119 (36%)
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQA- 370
+G GKS+ +N++ GE+ VS P L V V +
Sbjct: 42 LGKGGVGKSSTVNSLI----------GEQVVRVS-----PFQAEGLRPVMVSRTMGGFTI 86
Query: 371 KLFDTPGLLHPNQIT---------------------------TRLTREEQKLVNINKEL 402
+ DTPGL+ + + ++++V +
Sbjct: 87 NIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQT 145
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKIT-KLHFVSAVKNWGLKSLIDDVV 300
V+V KIDLL E + VSA G+ L+D
Sbjct: 112 EPVIVFNKIDLLNE-------EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDY-- 162
Query: 301 DLAGKRGNVWAIGAQN-AGKSTLLNAI 326
L G + + + GKS++L+ +
Sbjct: 163 -LEGF---ICILAGPSGVGKSSILSRL 185
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 100.0 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 100.0 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.77 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.71 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.68 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.67 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.65 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.61 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.6 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.59 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.5 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.43 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.41 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.38 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.38 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.38 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.37 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.36 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.36 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.35 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.34 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.33 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.33 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.33 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.32 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.32 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.32 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.32 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.31 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.3 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.29 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.29 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.29 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.28 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.26 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.26 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.26 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.25 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.25 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.25 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.19 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.18 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.18 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.15 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.05 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 98.99 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 98.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 98.98 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 98.96 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 98.96 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 98.94 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.93 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 98.92 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 98.89 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 98.88 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 98.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.78 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 98.68 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 98.64 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 98.64 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.62 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 98.59 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.59 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 98.52 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.51 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.51 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 98.48 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 98.41 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.41 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 98.32 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.26 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.23 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 98.22 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 98.22 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 98.17 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 98.16 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 98.11 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 98.1 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.08 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.03 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 98.03 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 98.02 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.99 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.98 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.96 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.95 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.95 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 97.94 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.93 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 97.92 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 97.91 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.91 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 97.9 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.89 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.87 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.87 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 97.86 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 97.86 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.85 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 97.84 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.83 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 97.83 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.82 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.82 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.82 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 97.81 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 97.8 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.8 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.8 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.79 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.79 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 97.78 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 97.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.75 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.74 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 97.73 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.72 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 97.72 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.72 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 97.71 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 97.7 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.7 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.7 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.69 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 97.69 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 97.68 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.67 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 97.67 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 97.67 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 97.67 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 97.67 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 97.67 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.66 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.66 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 97.66 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 97.65 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 97.64 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 97.64 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 97.64 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 97.64 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.63 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 97.62 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 97.62 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.61 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 97.61 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.61 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 97.61 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.61 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.61 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 97.61 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 97.61 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.6 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 97.6 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.6 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.6 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 97.59 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.59 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.59 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 97.59 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 97.59 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.58 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.58 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 97.57 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 97.57 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 97.57 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 97.56 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 97.55 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.55 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 97.55 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.55 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 97.55 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 97.55 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 97.54 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.53 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.52 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.52 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 97.52 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.52 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 97.52 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 97.52 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.51 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 97.51 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 97.5 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 97.5 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 97.5 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.49 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.49 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.49 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.49 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 97.49 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.48 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.48 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 97.48 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.47 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.47 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 97.47 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 97.47 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.46 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.46 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 97.45 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 97.45 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 97.45 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 97.45 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.44 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.44 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 97.44 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 97.44 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 97.44 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 97.44 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.44 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 97.44 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 97.43 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.43 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.43 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 97.43 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.42 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 97.42 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 97.42 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 97.42 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.41 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 97.41 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 97.41 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.41 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 97.41 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 97.4 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.4 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 97.39 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 97.38 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.38 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.38 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 97.38 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 97.37 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 97.37 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 97.37 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.37 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 97.37 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 97.37 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 97.37 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.36 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.36 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 97.36 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 97.36 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 97.36 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 97.35 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 97.35 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 97.34 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.45 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 97.32 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 97.32 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.32 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.32 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 97.32 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 97.31 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 97.31 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 97.3 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.3 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.3 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.3 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 97.3 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 97.29 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.29 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 97.29 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.29 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 97.29 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 97.28 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 97.28 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 97.28 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 97.28 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 97.28 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 97.27 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 97.27 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 97.27 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 97.27 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 97.27 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 97.26 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 97.26 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 97.25 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.25 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 97.25 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.25 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 97.23 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 97.23 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 97.23 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 97.23 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 97.23 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.22 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 97.21 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.21 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 97.21 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.2 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 97.19 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 97.19 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.18 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 97.18 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.18 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 97.16 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.16 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.15 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 97.15 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 97.15 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 97.13 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 97.13 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 97.13 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.13 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 97.12 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 97.12 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.12 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 97.11 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 97.11 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 97.11 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.11 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.11 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 97.11 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 97.1 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 97.1 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 97.09 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.09 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 97.08 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 97.08 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 97.07 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 97.07 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 97.07 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 97.06 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 97.06 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.05 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 97.05 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 97.04 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 97.04 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 97.04 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.04 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 97.03 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 97.03 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 97.02 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 97.02 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 97.01 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 97.01 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 97.0 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 96.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.98 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.98 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 96.98 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.97 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.97 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 96.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.96 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.96 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.95 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.95 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.94 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.94 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.94 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.94 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.92 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.91 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.91 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.9 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.9 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.9 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.89 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.88 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.88 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.88 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.87 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.87 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.87 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 96.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.86 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.86 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.86 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.85 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.85 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 96.85 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.84 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 96.84 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.84 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.83 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.83 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.83 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.83 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 96.83 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 96.83 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.82 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.82 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.82 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.82 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.81 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.8 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.79 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 96.77 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 96.77 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.75 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.74 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.74 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.73 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.72 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.71 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.71 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.7 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.7 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.7 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 96.7 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.69 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.68 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 96.67 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.67 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 96.65 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 96.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.65 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.63 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.63 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.62 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 96.59 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 96.59 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.58 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.58 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.58 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.58 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.56 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.54 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.53 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 96.52 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.52 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.51 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.5 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 96.48 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 96.48 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.48 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.48 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 96.47 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 96.43 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 96.42 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 96.41 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.39 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 96.39 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 96.37 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 96.37 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.35 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 96.35 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 96.32 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.31 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 96.3 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 96.28 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 96.26 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.26 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.24 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 96.22 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 96.22 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 96.21 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.21 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.2 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 96.19 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 96.19 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 96.18 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.17 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 96.17 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.16 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 96.16 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.15 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.15 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 96.14 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 96.11 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.09 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.05 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 96.03 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.96 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 95.91 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.89 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 95.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 95.85 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 95.83 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.8 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 95.79 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.75 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.73 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 95.71 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 95.68 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 95.68 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.62 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 95.59 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 95.56 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 95.54 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 95.52 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.52 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.49 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 95.49 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 95.48 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.46 |
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=331.78 Aligned_cols=251 Identities=32% Similarity=0.617 Sum_probs=156.6
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||.+... + ++ ..+.++|||||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----~------------------~~-----------------~~~~~~C~RC~~ 44 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKSV-----L------------------EK-----------------DAEEVICQRCFR 44 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChHH-----h------------------cC-----------------CCCCEEchhHHH
Confidence 5899999999999999999997531 1 10 124699999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
++|||++.++. ++.+.|...+. ...+.+++|++|+|++|+++++.+.+.+++.. .
T Consensus 45 l~hy~~~~~v~----~~~e~f~~~L~----~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~-----------------~ 99 (369)
T 3ec1_A 45 LKHYNEVQDVP----LDDDDFLSMLH----RIGESKALVVNIVDIFDFNGSFIPGLPRFAAD-----------------N 99 (369)
T ss_dssp ------------------CHHHHHHH----HHHHHCCEEEEEEETTCSGGGCCSSHHHHCTT-----------------S
T ss_pred hhccccccCCc----CCHHHHHHHHH----HhhccCcEEEEEEECCCCCCchhhHHHHHhCC-----------------C
Confidence 99999988764 35667765432 23345789999999999998777777776532 2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
|+++|+||+||++.....+.+.+|++..++..|. ...+++.+||++++|+++|++.+.++. .+..++++|.+|+||||
T Consensus 100 piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL-CPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVGKST 177 (369)
T ss_dssp CEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC-CCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSSHHH
T ss_pred CEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC-CcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCchHH
Confidence 8999999999998766667888998887777664 234789999999999999999996655 34579999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|||+|++..... ....+++.+||||++...+. +.....++||||+...++..+.+...+++.+.+.+.
T Consensus 178 liN~L~~~~~~~----------~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 245 (369)
T 3ec1_A 178 FINRIIEEATGK----------GNVITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQMAHFVDARDLKIITPKRE 245 (369)
T ss_dssp HHHHHHHHHHHT----------TCCCEEEECTTSSCEEEEEE--CSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSC
T ss_pred HHHHHHhhccCC----------ccceeecCCCCeEEeeEEEE--eCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccc
Confidence 999999753111 12456788999999887764 455689999999997777888888888888888899
Q ss_pred hcCCccccCC
Q 015085 402 LKPRTYRIKV 411 (413)
Q Consensus 402 l~~~~~~l~~ 411 (413)
+.+..|.+++
T Consensus 246 i~~~~~~l~~ 255 (369)
T 3ec1_A 246 IHPRVYQLNE 255 (369)
T ss_dssp CCCEEEEECT
T ss_pred cCceEEEEcC
Confidence 9999999987
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=327.25 Aligned_cols=250 Identities=32% Similarity=0.611 Sum_probs=150.3
Q ss_pred CCCCCCCccccccCCCCCccccCCcchhhhhhhccccccccchhhhhhhccCCceeccccccchhhhcCCCCccchhhhh
Q 015085 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (413)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~RC~~ 161 (413)
.+|.||||.||++||++|||.+... ++ .+.++|||||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----------------------~~-------------------~~~~~C~Rc~~ 42 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASS-----------------------LE-------------------KEQVICQRCFR 42 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCChHH-----------------------cc-------------------CCCcEEhhhhh
Confidence 5899999999999999999996531 11 13699999999
Q ss_pred hhhcCcccccccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCC
Q 015085 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (413)
Q Consensus 162 l~hy~~~~~~~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~ 241 (413)
++|||++..+. ++.+.|.+.+ ....+.+++|++|+|++|++.++...+.+++. + .
T Consensus 43 l~hy~~~~~v~----~~~e~f~~~l----~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~------------~-----~ 97 (368)
T 3h2y_A 43 LKHYNEIQDVS----LTDDDFLRIL----NGIGKSDALVVKIVDIFDFNGSWLPGLHRFVG------------N-----N 97 (368)
T ss_dssp -----------------CHHHHHHH----HHHHHSCCEEEEEEETTSHHHHCCTTHHHHSS------------S-----S
T ss_pred hhccCccccCC----CCHHHHHHHH----HHHhccCcEEEEEEECCCCcccHHHHHHHHhC------------C-----C
Confidence 99999987764 3456665433 23344678999999999976555555555432 2 3
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
|+++|+||+||++.....+.+.+|++..++..|. ...+++.+||++++|+++|++.|.++. .+..++++|.+|+||||
T Consensus 98 p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL-KPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKST 175 (368)
T ss_dssp CEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC-CCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHH
T ss_pred cEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCC-CcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhH
Confidence 8999999999998765667888998887777764 223789999999999999999996654 34578999999999999
Q ss_pred HHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHHHHHHhhh
Q 015085 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (413)
Q Consensus 322 Lin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~ 401 (413)
|+|+|++... |.. -...+++..||||++...+. +.....++||||+...++..+.+...+++.+.+.+.
T Consensus 176 liN~L~~~~~---~~~------~~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 244 (368)
T 3h2y_A 176 FINRMIKEFS---DET------ENVITTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKE 244 (368)
T ss_dssp HHHHHHHHHT---TSC------SSCCEEECCC----CEEEEE--SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSC
T ss_pred HHHHHHhhhc---ccc------ccceecCCCCCeecceEEEE--ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccc
Confidence 9999997641 100 12456788999999887764 455689999999998788888899999988888899
Q ss_pred hcCCccccCC
Q 015085 402 LKPRTYRIKV 411 (413)
Q Consensus 402 l~~~~~~l~~ 411 (413)
+.+..|.+++
T Consensus 245 i~~~~~~l~~ 254 (368)
T 3h2y_A 245 IKPMVFQLNE 254 (368)
T ss_dssp CCCEEEEECT
T ss_pred cCceEEEEcC
Confidence 9999999987
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=167.92 Aligned_cols=160 Identities=23% Similarity=0.323 Sum_probs=107.5
Q ss_pred CCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC
Q 015085 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS 256 (413)
Q Consensus 177 ~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~ 256 (413)
+|.+. ....+.+.+.+..+|+|++|+|++++..+..+.+.+++. + +|+++|+||+||++.
T Consensus 6 ~PGhm--~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~------------~-----kp~ilVlNK~DL~~~- 65 (282)
T 1puj_A 6 FPGHM--AKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK------------N-----KPRIMLLNKADKADA- 65 (282)
T ss_dssp ---CT--THHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS------------S-----SCEEEEEECGGGSCH-
T ss_pred CchHH--HHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHC------------C-----CCEEEEEECcccCCH-
Confidence 45542 124467778889999999999999988877777777663 2 289999999999853
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc-------------cCCcEEEEcCCCCcHHHHH
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-------------KRGNVWAIGAQNAGKSTLL 323 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~-------------~~g~~~~vG~ng~GKSTLi 323 (413)
...+.|...+ +..| ..++.+||.++.|+++|++.+.++.. ....++++|.+||||||||
T Consensus 66 ---~~~~~~~~~~-~~~g----~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsli 137 (282)
T 1puj_A 66 ---AVTQQWKEHF-ENQG----IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLI 137 (282)
T ss_dssp ---HHHHHHHHHH-HTTT----CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHH
T ss_pred ---HHHHHHHHHH-HhcC----CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHH
Confidence 4566776543 3333 26889999999999998887765432 1124777999999999999
Q ss_pred HHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 324 n~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
|+|.|.. ...++..||||++...+ .+.....++||||+..+
T Consensus 138 N~l~~~~---------------~~~~~~~~g~T~~~~~~--~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 138 NRLAKKN---------------IAKTGDRPGITTSQQWV--KVGKELELLDTPGILWP 178 (282)
T ss_dssp HHHHTSC---------------CC------------CCE--EETTTEEEEECCCCCCS
T ss_pred HHHhcCc---------------eeecCCCCCeeeeeEEE--EeCCCEEEEECcCcCCC
Confidence 9999533 23456778999876433 34556889999999754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-18 Score=160.85 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=100.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+...+..+|+|++|+|++++..+....+. ++ + ++.++|+||+||++. ...+.|..
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-------------~-----k~~iivlNK~DL~~~----~~~~~~~~ 69 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-------------R-----KETIILLNKVDIADE----KTTKKWVE 69 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-------------T-----SEEEEEEECGGGSCH----HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-------------C-----CCcEEEEECccCCCH----HHHHHHHH
Confidence 4566677889999999999998776554443 33 1 289999999999853 45667765
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~ 347 (413)
.+ +..| ..+ .+||.++.|+++|++.+.... ..++++|.+|+|||||||.|.+... .
T Consensus 70 ~~-~~~g----~~v-~iSa~~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~---------------~ 125 (262)
T 3cnl_A 70 FF-KKQG----KRV-ITTHKGEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRA---------------S 125 (262)
T ss_dssp HH-HHTT----CCE-EECCTTSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------------
T ss_pred HH-HHcC----CeE-EEECCCCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccc---------------c
Confidence 43 3344 247 899999999999988874432 3688899999999999999996432 1
Q ss_pred cccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 348 t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
.++..||+|.....+ .+.....++||||+..+
T Consensus 126 ~~~~~~g~T~~~~~~--~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 126 SVGAQPGITKGIQWF--SLENGVKILDTPGILYK 157 (262)
T ss_dssp ---------CCSCEE--ECTTSCEEESSCEECCC
T ss_pred ccCCCCCCccceEEE--EeCCCEEEEECCCcccC
Confidence 234567888765433 24456889999999854
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=158.23 Aligned_cols=187 Identities=17% Similarity=0.098 Sum_probs=109.0
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+...|+|++| |+.++..+ ...+.++|... +..++ ++++|+||+||++.. ....++.|+.. +
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~-~~~i~r~L~~a-------~~~~~-----~~iivlNK~DL~~~~-~~~~~~~~~~~-y 188 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELS-LNIIDRYLVGC-------ETLQV-----EPLIVLNKIDLLDDE-GMDFVNEQMDI-Y 188 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCC-HHHHHHHHHHH-------HHHTC-----EEEEEEECGGGCCHH-HHHHHHHHHHH-H
T ss_pred HHHHhcCCEEEEE-EeCCCCCC-HHHHHHHHHHH-------HhcCC-----CEEEEEECccCCCch-hHHHHHHHHHH-H
Confidence 3446778988854 67775444 34677776532 12244 789999999998642 11235667654 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc-CCCCCCcccccccccccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNIVSHLTE 349 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~v~~~t~ 349 (413)
+..| ..++++|+.++.|++.|...+ .+..+.++|+||||||||||+|+|... +..|.+........+.+.
T Consensus 189 ~~~G----~~v~~~Sa~~~~gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~ 259 (358)
T 2rcn_A 189 RNIG----YRVLMVSSHTQDGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT 259 (358)
T ss_dssp HTTT----CCEEECBTTTTBTHHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C
T ss_pred HhCC----CcEEEEecCCCcCHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE
Confidence 4444 358999999999988876543 222455599999999999999999998 888865532111111110
Q ss_pred ----cCCCCCeeeeEeec-------ccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhhcC
Q 015085 350 ----APVPGTTLGIVRVE-------GVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKELKP 404 (413)
Q Consensus 350 ----s~~pgtT~~~i~~~-------~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l~~ 404 (413)
..++... ..+..+ ..+.. ..++++..|+. ..++....|| |+++++++++++.+
T Consensus 260 ~~~i~~v~q~~-~l~dtpgv~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 260 AARLYHFPHGG-DVIDSPGVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp CCEEEECTTSC-EEEECHHHHTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred EEEEEEECCCC-EecCcccHHHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 0011000 000000 00000 11344444554 2466778899 99999999988743
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-17 Score=156.99 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=105.1
Q ss_pred cccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccC
Q 015085 173 VENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252 (413)
Q Consensus 173 i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DL 252 (413)
++.++|+..... + ..+...|+|++|+|+.++..+.. .+.++|... +..++ ++++|+||+||
T Consensus 69 i~~i~~R~~~l~---R---~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~-------~~~~~-----~~vivlnK~DL 129 (307)
T 1t9h_A 69 LMEIKERTNELI---R---PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLV-------EANDI-----QPIICITKMDL 129 (307)
T ss_dssp EEEECCCSCEET---T---TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHH-------HTTTC-----EEEEEEECGGG
T ss_pred EEEEcchhhhhh---H---HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHH-------HHCCC-----CEEEEEECCcc
Confidence 444566655331 1 35778999999999998877765 677777532 12243 88999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCc
Q 015085 253 LPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 253 l~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.+.....+.++.|.+. ++..| .+++.+||.++.|+++|++.. .|+ +.++|+||||||||||+|+|...
T Consensus 130 ~~~~~~~~~~~~~~~~-y~~~g----~~v~~~sa~~~~g~~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 130 IEDQDTEDTIQAYAED-YRNIG----YDVYLTSSKDQDSLADIIPHF------QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp CCCHHHHHHHHHHHHH-HHHHT----CCEEECCHHHHTTCTTTGGGG------TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CchhhhHHHHHHHHHH-HHhCC----CeEEEEecCCCCCHHHHHhhc------CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 8651000235667543 34444 368999999999999887654 244 45599999999999999999998
Q ss_pred CCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCCCCCCCHHH
Q 015085 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREE 392 (413)
Q Consensus 332 ~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge 392 (413)
+..|.+........++ |.....+ .+. ...++|+||+...+ ...++.++
T Consensus 199 ~~~G~I~~~~~~G~~t--------t~~~~~~--~~~-~g~v~dtpg~~~~~--l~~lt~e~ 246 (307)
T 1t9h_A 199 LRTNEISEHLGRGKHT--------TRHVELI--HTS-GGLVADTPGFSSLE--FTDIEEEE 246 (307)
T ss_dssp ------------------------CCCCCEE--EET-TEEEESSCSCSSCC--CTTCCHHH
T ss_pred ccccceeeecCCCccc--------ccHHHHh--hcC-CEEEecCCCccccc--cccCCHHH
Confidence 8888654321122222 2211111 122 46899999997532 22455533
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-16 Score=151.60 Aligned_cols=152 Identities=22% Similarity=0.254 Sum_probs=97.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|+|++|+|+.++..++. .+.+++.... ..++ |+++|+||+||.+.. .....++|.. .++
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~-------~~~~-----~~ilV~NK~DL~~~~-~v~~~~~~~~-~~~ 139 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNY-LLDNMLVVYE-------YFKV-----EPVIVFNKIDLLNEE-EKKELERWIS-IYR 139 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHH-HHHHHHHHHH-------HTTC-----EEEEEECCGGGCCHH-HHHHHHHHHH-HHH
T ss_pred HHHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHH-------hCCC-----CEEEEEEcccCCCcc-ccHHHHHHHH-HHH
Confidence 35778999999999998755543 4556654321 1233 899999999997531 0011344432 334
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA 350 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s 350 (413)
..| ..++.+||+++.|+++|++.+. +.+ .++|+||||||||+|+|+ ...+.+|.+......+.++
T Consensus 140 ~~g----~~~~~~SA~~g~gi~~L~~~l~------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~--- 205 (302)
T 2yv5_A 140 DAG----YDVLKVSAKTGEGIDELVDYLE------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT--- 205 (302)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHTT------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C---
T ss_pred HCC----CeEEEEECCCCCCHHHHHhhcc------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc---
Confidence 444 3689999999999999987762 344 459999999999999999 9999999765322122222
Q ss_pred CCCCCeeeeEeeccccccccccccccccc
Q 015085 351 PVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 351 ~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
|.....+ .......++|+||+.
T Consensus 206 -----t~~~~~~--~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 206 -----TTGVRLI--PFGKGSFVGDTPGFS 227 (302)
T ss_dssp -----CCCEEEE--EETTTEEEESSCCCS
T ss_pred -----eeeEEEE--EcCCCcEEEECcCcC
Confidence 2111111 122456889999985
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-16 Score=156.41 Aligned_cols=158 Identities=26% Similarity=0.293 Sum_probs=102.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... ++ |+++|+||+|+...
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~-----p~ilv~NK~D~~~~------ 125 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS----------TV-----DTILVANKAENLRE------ 125 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TC-----CEEEEEESCCSHHH------
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CC-----CEEEEEeCCCCccc------
Confidence 4455667777889999999999999876554455666666532 33 89999999998421
Q ss_pred HHHHH-HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc------C-------CcEEEEcCCCCcHHHHHHHHH
Q 015085 262 FEHWV-RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK------R-------GNVWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 262 l~~~~-~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~------~-------g~~~~vG~ng~GKSTLin~L~ 327 (413)
...-. .++. ..| +..++.+||++|.|+.+|++.|.+.... . -.+.++|.+|||||||+|+|+
T Consensus 126 ~~~~~~~~~~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 126 FEREVKPELY-SLG---FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp HHHHTHHHHG-GGS---SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHH
T ss_pred cHHHHHHHHH-hcC---CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHh
Confidence 01111 1121 233 3467899999999999999888554321 1 156779999999999999999
Q ss_pred ccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 328 KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 328 g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
|.. ...++..+|||++.......+. ....++||+|+.
T Consensus 202 g~~---------------~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 202 NKE---------------RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239 (439)
T ss_dssp TST---------------TEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred CCc---------------ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence 643 1234677888887644322232 246789999985
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-16 Score=158.43 Aligned_cols=159 Identities=24% Similarity=0.261 Sum_probs=100.9
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..+++.+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+......
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~----------~-----~pvilv~NK~D~~~~~~~--- 129 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT----------K-----KPVVLAVNKLDNTEMRAN--- 129 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC----------C-----SCEEEEEECCCC-----C---
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECccCccchhh---
Confidence 4455666677788899999999999886554455565555421 3 389999999998743111
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc---------CCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~---------~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..+| . ..| +..++.+||++|.|+.+|++.+.+.... .-++.++|.+|||||||+|.|++..
T Consensus 130 ~~~~----~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~-- 199 (436)
T 2hjg_A 130 IYDF----Y-SLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-- 199 (436)
T ss_dssp CCSS----G-GGS---SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--
T ss_pred HHHH----H-HcC---CCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC--
Confidence 1111 1 122 3468899999999999999888665542 1257779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~~ 381 (413)
...++..+|||++.+...+... ....++||||+...
T Consensus 200 -------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 200 -------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 236 (436)
T ss_dssp -------------TEEEC---------CCEEEEETTEEEEETTHHHHTCB
T ss_pred -------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcC
Confidence 1234567889987654332222 35789999998643
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=145.37 Aligned_cols=122 Identities=20% Similarity=0.156 Sum_probs=82.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+++...++ ..+.+++.... ..+ .|+++|+||+||.+.. ..++.++|...
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~-------~~~-----~piilv~NK~DL~~~~-~v~~~~~~~~~--- 142 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETST-YIIDKFLVLAE-------KNE-----LETVMVINKMDLYDED-DLRKVRELEEI--- 142 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCH-HHHHHHHHHHH-------HTT-----CEEEEEECCGGGCCHH-HHHHHHHHHHH---
T ss_pred cccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHH-------HCC-----CCEEEEEeHHHcCCch-hHHHHHHHHHH---
Confidence 4567899999999999865443 34555554321 013 3899999999997431 01224445432
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+. . ..++.+||+++.|+++++..+. +..+.++|+||||||||||+|+|+..+++|.+.
T Consensus 143 -~~~-~-~~~~~~SAktg~gv~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 143 -YSG-L-YPIVKTSAKTGMGIEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp -HTT-T-SCEEECCTTTCTTHHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred -Hhh-h-CcEEEEECCCCcCHHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 221 1 3688999999999999987762 223455999999999999999999999998654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=147.90 Aligned_cols=159 Identities=23% Similarity=0.250 Sum_probs=100.4
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~ 261 (413)
+.+.+.+.+..++..+|+||+|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~----------~-----~pvilV~NK~D~~~~~---~~ 149 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT----------K-----KPVVLAVNKLDNTEMR---AN 149 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC----------C-----SCEEEEEECC-----------
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc----------C-----CCEEEEEECccchhhh---hh
Confidence 4555666777788889999999999876655566666666532 3 3899999999986431 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc---------cCCcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~---------~~g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++ . .. ++..++.+||+++.|+.+|++.+.+... ..-++.++|.+|+|||||+|.|++..
T Consensus 150 ~~e~----~-~l---g~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~-- 219 (456)
T 4dcu_A 150 IYDF----Y-SL---GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-- 219 (456)
T ss_dssp -CCS----G-GG---SSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--
T ss_pred HHHH----H-Hc---CCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC--
Confidence 1111 1 12 2356789999999999999888765442 12356779999999999999999532
Q ss_pred CCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 333 ~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
...++..+|||.+.+...... .....++||||+...
T Consensus 220 -------------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 220 -------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKK 256 (456)
T ss_dssp -------------TEEECC------CTTSEEEEETTEEEEETTGGGTTTB
T ss_pred -------------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcC
Confidence 123456788888754322222 235689999998653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=137.08 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=92.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+ ..+.+
T Consensus 4 l~~~~l~~~yg~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEeEEEEECCEEEEeee-EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4445566778878888888 88888888776 999999999999999999999999865332222 11111
Q ss_pred c--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1 233322 2333221110 0 012456666765 45788999999999999999999 78999999985
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=135.17 Aligned_cols=132 Identities=18% Similarity=0.255 Sum_probs=92.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc--------------c
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------S 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------~ 345 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+..|++|.+......+ .
T Consensus 5 l~i~~ls~~y~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDI-SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 3445566778878888888 88888888776 999999999999999999999999865332221 1
Q ss_pred ccccc--CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 346 HLTEA--PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 346 ~~t~s--~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+.+. -+|..| .+.+.+..... ....+++..|+. ..++.+..|||||+|||++||+| .|+.+.||
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22111 233322 33333221110 012456666775 45788999999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 164 EPt 166 (359)
T 3fvq_A 164 EPF 166 (359)
T ss_dssp STT
T ss_pred CCc
Confidence 985
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=131.97 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=92.6
Q ss_pred eEEEeEEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------cccc
Q 015085 280 KLHFVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHL 347 (413)
Q Consensus 280 ~V~~vSa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~ 347 (413)
.+.+.+..+.| |...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGV-SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred eEEEEEEEEEEcCCCEEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE
Confidence 35556667778 766788888 78888888776 99999999999999999999999976533222 1222
Q ss_pred ccc--CCCCCe-eeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 348 TEA--PVPGTT-LGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 348 t~s--~~pgtT-~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.+. -+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||++++|+| .|+.+.||+|
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 172 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEP 172 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 221 234322 3333321110 1 012456667775 35788999999999999999999 6899999998
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 173 ~ 173 (355)
T 1z47_A 173 F 173 (355)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-13 Score=132.30 Aligned_cols=131 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA 350 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s 350 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+.
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (359)
T 2yyz_A 5 RVVNLKKYFGKVKAVDGV-SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQN 83 (359)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSS
T ss_pred EEEEEEEEECCEEEEeee-EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecC
Confidence 344555677766778888 78888888776 99999999999999999999999986533222 2222221
Q ss_pred --CCCCCe-eeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+..... ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 234423 34433321111 012456666775 35788999999999999999999 78999999985
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-13 Score=128.40 Aligned_cols=132 Identities=21% Similarity=0.224 Sum_probs=89.3
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS------------HL 347 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~------------~~ 347 (413)
+...+....|+...+++.+ ++....|+++. +|+||||||||+++|+|+++|++|.+......+. .+
T Consensus 12 l~~~~l~~~~~~~~vL~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDV-SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEeEEEEeCCeeEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 3445556677878888888 88888888776 9999999999999999999999998653322221 11
Q ss_pred ccc---CCCCCeeeeEeecccc-c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--------cCCccc
Q 015085 348 TEA---PVPGTTLGIVRVEGVL-P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--------KPRTYR 408 (413)
Q Consensus 348 t~s---~~pgtT~~~i~~~~~l-~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--------~~~~~~ 408 (413)
... ..+.|..+.+.+.... . ....+++..|+. ..++....|||||+||+++||+| .|+.+.
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 111 1122333333221100 0 012345556665 35678899999999999999999 578899
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
||+|.
T Consensus 171 lDEPt 175 (266)
T 4g1u_C 171 LDEPT 175 (266)
T ss_dssp ECCCC
T ss_pred EeCcc
Confidence 99884
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-13 Score=132.29 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=90.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA 350 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s 350 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+..|++|.+...... +..+.+.
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~ 83 (362)
T 2it1_A 5 KLENIVKKFGNFTALNNI-NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQN 83 (362)
T ss_dssp EEEEEEEESSSSEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTT
T ss_pred EEEeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecC
Confidence 344556677766788888 78888888776 99999999999999999999999976533222 2222221
Q ss_pred --CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 --PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 --~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+... .. ...++++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 234322 333332111 00 012456667775 35788999999999999999999 68899999885
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-13 Score=125.67 Aligned_cols=130 Identities=24% Similarity=0.209 Sum_probs=87.7
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------cc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VS 345 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~ 345 (413)
+......|+...+++.+ ++....|++++ +|+||||||||+++|+|+.+|++|.+...... +.
T Consensus 7 ~~~l~~~y~~~~~l~~v-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGI-SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG 85 (224)
T ss_dssp EEEEEEEETTEEEEEEE-EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred EEeEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence 33445667666788888 78888888776 99999999999999999999999975432211 22
Q ss_pred ccccc--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 346 HLTEA--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
.+... .++. |..+.+.+.... . ....+++..|+. ..++.+..||+||+||++++++| .|+.+.||
T Consensus 86 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 86 FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 22221 1222 222333221100 0 012456666775 35688899999999999999999 68899999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 166 EPt 168 (224)
T 2pcj_A 166 EPT 168 (224)
T ss_dssp STT
T ss_pred CCC
Confidence 885
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.1e-13 Score=131.94 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=89.4
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------------
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV---------------- 344 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v---------------- 344 (413)
.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+
T Consensus 5 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~i 83 (372)
T 1g29_1 5 RLVDVWKVFGEVTAVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (372)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCE
Confidence 344555677766788888 78888888776 999999999999999999999999765332221
Q ss_pred cccccc--CCCCCe-eeeEeecccc---cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 345 SHLTEA--PVPGTT-LGIVRVEGVL---PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 345 ~~~t~s--~~pgtT-~~~i~~~~~l---~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..+.+. -+|..| .+.+.+.... .. ...+++..|+. ..++.+..|||||+||++++|+| .|+.+.|
T Consensus 84 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 163 (372)
T 1g29_1 84 AMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM 163 (372)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 123322 2333221100 00 12456666775 35788999999999999999999 7899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 164 DEP~ 167 (372)
T 1g29_1 164 DEPL 167 (372)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 9986
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-13 Score=132.40 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=90.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTE 349 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~ 349 (413)
+.+.+..+.||...+++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+ ..+.+
T Consensus 12 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEEEECCEEEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 4445566777766788888 78888888776 999999999999999999999999765332222 12221
Q ss_pred c--CCCC-CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 350 A--PVPG-TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 350 s--~~pg-tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. -+|. |..+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1 1233 222333221111 0 012456667775 35788999999999999999999 68999999985
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-13 Score=134.54 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=88.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA-- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s-- 350 (413)
....+.||.. +++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+.
T Consensus 5 ~~l~~~y~~~-~l~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 82 (348)
T 3d31_A 5 ESLSRKWKNF-SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYS 82 (348)
T ss_dssp EEEEEECSSC-EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCC
T ss_pred EEEEEEECCE-EEeee-EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcc
Confidence 3445667655 78888 78888888776 99999999999999999999999976533222 2222222
Q ss_pred CCCCCe-eeeEeecccc---c---cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPGTT-LGIVRVEGVL---P---AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pgtT-~~~i~~~~~l---~---~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|..| .+.+.+.... . ....+++..|+. ..++.+..|||||+||++++|+| .|+.+.||+|+
T Consensus 83 l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 234423 3433321110 0 112456677775 35788999999999999999999 68999999985
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.33 E-value=6.1e-13 Score=131.67 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=83.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc--CCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA--PVPG 354 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s--~~pg 354 (413)
..+++.+ ++...+|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+. -++.
T Consensus 41 ~~aL~~v-sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 41 IQALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT
T ss_pred eEEEEee-EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC
Confidence 3578888 88888888877 99999999999999999999999986533222 2222221 1233
Q ss_pred -CeeeeEeecccc---c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGVL---P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~l---~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+.... . ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.+|+|.
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT 191 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 223333221111 0 012456677775 45788999999999999999999 68889998874
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-13 Score=130.45 Aligned_cols=130 Identities=16% Similarity=0.211 Sum_probs=89.1
Q ss_pred EeEEEeecCcch--hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc---------------
Q 015085 283 FVSAVKNWGLKS--LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV--------------- 344 (413)
Q Consensus 283 ~vSa~~~~Gi~~--Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v--------------- 344 (413)
+.+..+.||... +++.+ ++....|+++. +|+||||||||+++|+|+.+|++|.+......+
T Consensus 6 i~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~i 84 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI 84 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCE
T ss_pred EEeEEEEECCEeeeeEece-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCE
Confidence 334556666666 78888 78888888776 999999999999999999999999765332221
Q ss_pred cccccc--CCCC-CeeeeEeeccccc---------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 345 SHLTEA--PVPG-TTLGIVRVEGVLP---------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 345 ~~~t~s--~~pg-tT~~~i~~~~~l~---------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
..+.+. -+|. |..+.+.+..... ....+++..|+. ..++.+..|||||+||+++||+| .|+.+.|
T Consensus 85 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLL 164 (353)
T 1oxx_K 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (353)
T ss_dssp EEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 111111 1343 2233333321110 012456666775 35788999999999999999999 6899999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 165 DEP~ 168 (353)
T 1oxx_K 165 DEPF 168 (353)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 9985
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-13 Score=127.93 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=87.8
Q ss_pred EEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 282 HFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 282 ~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
.+......|+. ..+++.+ ++...+|++++ +|+||||||||+++|+|+++|++|.+...... +.
T Consensus 9 ~i~~ls~~y~~~~~~L~~i-sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig 87 (275)
T 3gfo_A 9 KVEELNYNYSDGTHALKGI-NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIG 87 (275)
T ss_dssp EEEEEEEECTTSCEEEEEE-EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEE
T ss_pred EEEEEEEEECCCCeEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEE
Confidence 34455566654 3478888 88888888776 99999999999999999999999976533221 12
Q ss_pred cccccC----CCCCeeeeEeeccc---ccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEAP----VPGTTLGIVRVEGV---LPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s~----~pgtT~~~i~~~~~---l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+.+.+ +..|..+.+.+... ... ...+++..|+. ..++.+..||+||+||+++|++| .|+.+.|
T Consensus 88 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlL 167 (275)
T 3gfo_A 88 IVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167 (275)
T ss_dssp EECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222211 12233333322110 000 12355666775 35788999999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 168 DEPt 171 (275)
T 3gfo_A 168 DEPT 171 (275)
T ss_dssp ECTT
T ss_pred ECcc
Confidence 9884
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-13 Score=126.31 Aligned_cols=132 Identities=24% Similarity=0.322 Sum_probs=89.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------ccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~ 346 (413)
+.+......||...+++.+ ++....|++++ +|+||+|||||+|+|+|+++|++|.+...... +..
T Consensus 8 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEEEETTEEEEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEeeeEEEECCEeeEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 3444556677767788888 78888888776 99999999999999999999999976432211 112
Q ss_pred ccccC--CCC-CeeeeEeecccc----------------cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhh
Q 015085 347 LTEAP--VPG-TTLGIVRVEGVL----------------PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINK 400 (413)
Q Consensus 347 ~t~s~--~pg-tT~~~i~~~~~l----------------~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r 400 (413)
+.+.. ++. |..+.+.+.... .. ...+++..|+. ..++.+..||+||+||+++|+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 21111 122 223333221100 00 12345566775 357888999999999999999
Q ss_pred hh--cCCccccCCCC
Q 015085 401 EL--KPRTYRIKVSL 413 (413)
Q Consensus 401 ~l--~~~~~~l~~~~ 413 (413)
+| .|+.+.||+|+
T Consensus 167 aL~~~p~lllLDEPt 181 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPI 181 (257)
T ss_dssp HHHTCCSEEEEESTT
T ss_pred HHHcCCCEEEEeCCc
Confidence 99 78999999985
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-13 Score=125.59 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=88.0
Q ss_pred EeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCC-Cee
Q 015085 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPG-TTL 357 (413)
Q Consensus 283 ~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pg-tT~ 357 (413)
+......|+ ...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+.. ...+..+.... ++. |..
T Consensus 7 i~~l~~~y~~~~~vl~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQL-NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp EEEEEEEETTTTEEEEEE-EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-CSCEEEECSCCCCSSCCBHH
T ss_pred EeeEEEEeCCCCeEEEEE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-eccEEEEcCCCccCCCCCHH
Confidence 334455666 56678888 78778888776 9999999999999999999999997641 12233333221 222 333
Q ss_pred eeEeecccc--------cc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVL--------PA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l--------~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+.... .. ...+++..|+. ..++....||+||+||+++|++| .|+.+.||+|+
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 443331100 00 12345566765 34678899999999999999999 78999999985
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-13 Score=123.97 Aligned_cols=131 Identities=25% Similarity=0.283 Sum_probs=87.3
Q ss_pred EEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-------------cccc
Q 015085 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 282 ~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------v~~~ 347 (413)
.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +..+
T Consensus 8 ~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 86 (240)
T 1ji0_A 8 EVQSLHVYYGAIHAIKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALV 86 (240)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred EEEeEEEEECCeeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEE
Confidence 344455667766788888 78888888776 99999999999999999999999976432211 2222
Q ss_pred ccc--CCCC-CeeeeEeecc--cccc-c-----ccccccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 348 TEA--PVPG-TTLGIVRVEG--VLPA-Q-----AKLFDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 348 t~s--~~pg-tT~~~i~~~~--~l~~-~-----~~liDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
... .+++ |..+.+.+.. .... . ..+++.. |+. ..++....||+||+||++++++| .|+.+.||+|
T Consensus 87 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 87 PEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp CSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred ecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1234 3333333211 0000 0 1234444 464 34678899999999999999999 6889999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
+
T Consensus 167 t 167 (240)
T 1ji0_A 167 S 167 (240)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-13 Score=123.52 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=88.2
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc-------cccccccc--
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEA-- 350 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~-------~v~~~t~s-- 350 (413)
+.+......|+. .+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+...
T Consensus 11 l~~~~ls~~y~~-~il~~v-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEEEESSS-EEEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEEEeCC-eEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc
Confidence 445555667766 788888 77777887665 9999999999999999999999998653321 12222221
Q ss_pred CCCC-CeeeeEeecccc---c----ccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVL---P----AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l---~----~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++ |..+.+.+.... . ....+++..|+...++....||+||+||++++++| .|+.+.||+|+
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1233 223333221000 0 01234556666422677899999999999999999 68889999885
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-13 Score=124.41 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=82.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPG 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pg 354 (413)
.+++.+ ++....|++++ +|+||||||||+++|+|+++|++|.+...... +..+.+. .+++
T Consensus 19 ~~L~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 19 YALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 477887 78888888776 99999999999999999999999986532211 2222222 2344
Q ss_pred -CeeeeEeeccc------ccc------cccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 -TTLGIVRVEGV------LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 -tT~~~i~~~~~------l~~------~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+... ... ...+++..|+.. .++.+..||+||+||+++||+| .|+.+.+|+|+
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPt 173 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 33343322100 000 124566667753 3788999999999999999999 68889999884
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=127.76 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=89.1
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
+.+......|+...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+...... +.
T Consensus 22 l~~~~l~~~y~~~~vL~~i-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKI-SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEEEeEEEEECCEEEEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 3344556677767788888 78888888776 99999999999999999999999876533221 11
Q ss_pred cccccC---CCC--CeeeeEeeccc--------ccc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 346 HLTEAP---VPG--TTLGIVRVEGV--------LPA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 346 ~~t~s~---~pg--tT~~~i~~~~~--------l~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.+.... +.. |..+.+.+... ... ...+++..|+. ..++.+..||+||+||+++||+| .|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 121111 111 33333322100 000 12345666775 35688899999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 181 ~lLlLDEPt 189 (279)
T 2ihy_A 181 QVLILDEPA 189 (279)
T ss_dssp SEEEEESTT
T ss_pred CEEEEeCCc
Confidence 899999885
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.29 E-value=5.9e-13 Score=126.46 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=90.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------- 343 (413)
+.+......||...+++.+ ++....|++++ +|+||||||||+++|+|+++|++|.+......
T Consensus 7 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEeeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 3344555667766788888 88888888776 99999999999999999999999976432211
Q ss_pred ---------ccccccc--CCCC-CeeeeEeecc-c---ccc------cccccccccccC--CCCCCCCCCHHHHHHHHHh
Q 015085 344 ---------VSHLTEA--PVPG-TTLGIVRVEG-V---LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (413)
Q Consensus 344 ---------v~~~t~s--~~pg-tT~~~i~~~~-~---l~~------~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~ 399 (413)
+..+... .++. |..+.+.+.. . ... ...+++..|+.. .++.+..||+||+||+++|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 1112111 1233 2333333210 0 110 123566667753 5788999999999999999
Q ss_pred hhh--cCCccccCCCC
Q 015085 400 KEL--KPRTYRIKVSL 413 (413)
Q Consensus 400 r~l--~~~~~~l~~~~ 413 (413)
++| .|+.+.||+|+
T Consensus 166 raL~~~p~lllLDEPt 181 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPT 181 (262)
T ss_dssp HHHHTCCSEEEEESTT
T ss_pred HHHhcCCCEEEEeCCC
Confidence 999 78899999885
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=123.14 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=89.4
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------cc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI--------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~--------------v~ 345 (413)
+.+......||...+++.+ ++....|++++ +|+||+|||||+++|+|+++|++|.+...... +.
T Consensus 25 l~i~~l~~~y~~~~vL~~v-sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGI-NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 3444555667766788888 88888888776 99999999999999999999999976433221 11
Q ss_pred ccccc--CCCC-CeeeeEeecc----cccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcccc
Q 015085 346 HLTEA--PVPG-TTLGIVRVEG----VLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (413)
Q Consensus 346 ~~t~s--~~pg-tT~~~i~~~~----~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l 409 (413)
.+... .++. |..+.+.+.. .... ...+++..|+. ..++.+..||+||+||+++|++| .|+.+.|
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 22111 1233 2233332210 0010 12355666775 35688899999999999999999 6889999
Q ss_pred CCCC
Q 015085 410 KVSL 413 (413)
Q Consensus 410 ~~~~ 413 (413)
|+|+
T Consensus 184 DEPt 187 (263)
T 2olj_A 184 DEPT 187 (263)
T ss_dssp ESTT
T ss_pred eCCc
Confidence 9885
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=122.37 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=89.8
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t 348 (413)
+.+....+.|+...+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+...... +..+.
T Consensus 16 l~i~~l~~~y~~~~vl~~v-sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 16 VVVKDLRKRIGKKEILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEEEECCEEEEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 4455556677767788888 78888888776 99999999999999999999999976432211 22222
Q ss_pred cc--CCCCCe-eeeEeeccc---cc------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~---l~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .+++.| .+.+.+... .. ....+++..|+. ..++....||+||+||++++++| .|+.+.||+|+
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 21 123323 333322110 01 012355666775 34677899999999999999999 68899999885
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-12 Score=123.48 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=85.8
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+......|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +
T Consensus 17 l~~~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNVQVLQGL-TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEEEECCTTCTTSCCEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEEEeCCCCCceeeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 444455566764 5678888 78888888776 99999999999999999999999986432211 2
Q ss_pred cccccc--CCCCCeeeeEeecccc-cc--c----------ccccccc--ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVL-PA--Q----------AKLFDTP--GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l-~~--~----------~~liDtp--Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
..+... -+++|..+.+.+.... .. . ..+++.. |+. ..++....||+||+||++++|+| .|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p 175 (271)
T 2ixe_A 96 AAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175 (271)
T ss_dssp EEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 222221 1233434443321110 00 0 0122222 453 23567889999999999999999 68
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|+
T Consensus 176 ~lllLDEPt 184 (271)
T 2ixe_A 176 RLLILDNAT 184 (271)
T ss_dssp SEEEEESTT
T ss_pred CEEEEECCc
Confidence 889999885
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-12 Score=120.44 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=81.4
Q ss_pred EeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--CCC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--PVP 353 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~~p 353 (413)
...||. .++.+ ++.... ++++ +|+||||||||+++|+|+.+|++|.+...... +..+... .++
T Consensus 8 ~~~y~~--~l~~i-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~ 83 (240)
T 2onk_A 8 EKRLGN--FRLNV-DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFP 83 (240)
T ss_dssp EEEETT--EEEEE-EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCT
T ss_pred EEEeCC--EEeee-EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCC
Confidence 344542 36777 677777 7665 99999999999999999999999976432211 2222221 123
Q ss_pred C-CeeeeEeeccccc-------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 354 G-TTLGIVRVEGVLP-------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 354 g-tT~~~i~~~~~l~-------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+ |..+.+.+..... ....+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|+
T Consensus 84 ~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 84 HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred CCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3 2233332211110 012456667775 35688899999999999999999 68899999885
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=115.66 Aligned_cols=128 Identities=10% Similarity=0.183 Sum_probs=79.6
Q ss_pred EEEeec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc
Q 015085 285 SAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA 350 (413)
Q Consensus 285 Sa~~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s 350 (413)
.....| +...+++.+ ++....|++++ +|+||+|||||+++|+|+++|.+|.+...... +..+...
T Consensus 6 ~l~~~y~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 84 (243)
T 1mv5_A 6 HVDFAYDDSEQILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQD 84 (243)
T ss_dssp EEEECSSSSSCSEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCS
T ss_pred EEEEEeCCCCceEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCC
Confidence 344556 445678888 78788888766 99999999999999999999999986533211 1111111
Q ss_pred C--CCCCeeeeEeeccc--ccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 351 P--VPGTTLGIVRVEGV--LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 351 ~--~pgtT~~~i~~~~~--l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
+ +++|..+.+.+... ... ...+++..|+.. .++....||+||+||+++||+| .|+.+.||
T Consensus 85 ~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD 164 (243)
T 1mv5_A 85 SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD 164 (243)
T ss_dssp SCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred CccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 12222233322100 000 011122223321 1234578999999999999999 68999999
Q ss_pred CCC
Q 015085 411 VSL 413 (413)
Q Consensus 411 ~~~ 413 (413)
+|+
T Consensus 165 EPt 167 (243)
T 1mv5_A 165 EAT 167 (243)
T ss_dssp CCS
T ss_pred CCc
Confidence 885
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-12 Score=122.56 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=85.3
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+|.+......| +...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+...... +
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 45666666777 345678888 78888888776 99999999999999999999999976432211 1
Q ss_pred cccccc--CCCCCeeeeEeeccc-ccc--cccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGV-LPA--QAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~-l~~--~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... .+++|..+.+.+... ... ...+++..|+ . ..++....||+||+||+++||+| .|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 122221 123333444332110 000 0011222222 2 12345689999999999999999 688
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 166 lllLDEPt 173 (247)
T 2ff7_A 166 ILIFDEAT 173 (247)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCc
Confidence 89999885
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-12 Score=119.61 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=82.9
Q ss_pred EEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCC
Q 015085 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGT 355 (413)
Q Consensus 281 V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgt 355 (413)
+.+......|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+.... .+..+...+ +++|
T Consensus 7 l~~~~l~~~y~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~i~~v~q~~~~~~~t 84 (229)
T 2pze_A 7 VVMENVTAFWEEGGTPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQFSWIMPGT 84 (229)
T ss_dssp EEEEEEEECSSTTSCCSEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-CEEEECSSCCCCSBC
T ss_pred EEEEEEEEEeCCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-EEEEEecCCcccCCC
Confidence 34445556663 35678888 78888888776 999999999999999999999999765332 222332221 2344
Q ss_pred eeeeEeecccccc--ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLGIVRVEGVLPA--QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~~i~~~~~l~~--~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+.+.+...... ...+.+..++. ..++....||+||+||+.+||+| .|+.+.||+|+
T Consensus 85 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 85 IKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 4444432111100 00111111211 11233579999999999999999 68899999885
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-12 Score=123.37 Aligned_cols=120 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------cccccccc---CC-CCCeee
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------IVSHLTEA---PV-PGTTLG 358 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------~v~~~t~s---~~-pgtT~~ 358 (413)
..+++.+ ++....|++++ +|+||+|||||+++|+|+.+|++|.+..... .+..+... .+ ..|..+
T Consensus 20 ~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENV-SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred cceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence 4578887 78888888776 9999999999999999999999998643221 12222222 12 233344
Q ss_pred eEeeccc--ccc------ccccccccccc--C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 359 IVRVEGV--LPA------QAKLFDTPGLL--H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~--l~~------~~~liDtpGl~--~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+.+... ... ...+++..|+. . .++.+..||+||+||++++++| .|+.+.||+|+
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 4433111 111 12356666774 2 4678899999999999999999 68899999885
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-12 Score=120.43 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=81.5
Q ss_pred EeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC-CC-CCee
Q 015085 283 FVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP-VP-GTTL 357 (413)
Q Consensus 283 ~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~-~p-gtT~ 357 (413)
+......|+ ...+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+.... .+..+...+ ++ .|..
T Consensus 6 ~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~~~~~tv~ 83 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-SVAYVPQQAWIQNDSLR 83 (237)
T ss_dssp EEEEEEESCTTSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-CEEEECSSCCCCSEEHH
T ss_pred EEEEEEEeCCCCCceeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-EEEEEcCCCcCCCcCHH
Confidence 334455665 35678888 78888888776 999999999999999999999988765332 222222221 11 2222
Q ss_pred eeEeeccccccc--------cccccccccc------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 358 GIVRVEGVLPAQ--------AKLFDTPGLL------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l~~~--------~~liDtpGl~------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+.+.+....... ..+.+..++. ..++....||+||+||++++|+| .|+.+.||+|+
T Consensus 84 enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 84 ENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp HHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 333221111000 0111111111 12466789999999999999999 68999999985
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-12 Score=120.26 Aligned_cols=129 Identities=20% Similarity=0.174 Sum_probs=79.9
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCcccccc-------------cccc
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNI-------------VSHL 347 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~-------------v~~~ 347 (413)
......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..|++|.+...... +..+
T Consensus 7 ~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 85 (250)
T 2d2e_A 7 RDLWASIDGETILKGV-NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLA 85 (250)
T ss_dssp EEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCC
T ss_pred EeEEEEECCEEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEe
Confidence 3445566666788888 78888888776 999999999999999998 77888875432211 1111
Q ss_pred ccc--CCCCCee-eeEeecc----cc--c------cccccccccccc--CCCCCCCC-CCHHHHHHHHHhhhh--cCCcc
Q 015085 348 TEA--PVPGTTL-GIVRVEG----VL--P------AQAKLFDTPGLL--HPNQITTR-LTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 348 t~s--~~pgtT~-~~i~~~~----~l--~------~~~~liDtpGl~--~~~~~~~~-LS~ge~q~v~i~r~l--~~~~~ 407 (413)
... .+++.|. +.+.+.. .. . ....+++..|+. ..++.+.. ||+||+||++++++| .|+.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp CCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEE
T ss_pred ccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 111 1233332 2222110 00 0 012345555762 34677788 999999999999999 78899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|+
T Consensus 166 lLDEPt 171 (250)
T 2d2e_A 166 VLDETD 171 (250)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 999874
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-12 Score=127.23 Aligned_cols=132 Identities=16% Similarity=0.237 Sum_probs=85.0
Q ss_pred eEEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------
Q 015085 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------ 344 (413)
Q Consensus 280 ~V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------ 344 (413)
.+.+.+..+.| |...+++.+ ++....|+++. +|+||||||||+++|+|+.. .+|.+......+
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred eEEEEEEEEEecCCCeEEeece-eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 35566666777 566788888 88888888777 99999999999999999987 778754332222
Q ss_pred ccccccC--CCCCeeeeEeeccccc--cccccccccccc-CCCCCCCC-----------CCHHHHHHHHHhhhh--cCCc
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLP--AQAKLFDTPGLL-HPNQITTR-----------LTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~--~~~~liDtpGl~-~~~~~~~~-----------LS~ge~q~v~i~r~l--~~~~ 406 (413)
..+.+.. ++.|..+.+....... ....+++..|+. ..++.... |||||+||+++||+| .|+.
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 1222211 2222223222110000 011344455554 23455555 999999999999999 7888
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|+
T Consensus 177 LLLDEPt 183 (390)
T 3gd7_A 177 LLLDEPS 183 (390)
T ss_dssp EEEESHH
T ss_pred EEEeCCc
Confidence 8888874
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.18 E-value=9.7e-12 Score=118.39 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=84.5
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHcc--CcCCCCCCccccccc-------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGEEKNIV------------- 344 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~--~~~~~G~~~~~~~~v------------- 344 (413)
+.+......|+...+++.+ ++....|++++ +|+||+|||||+++|+|+ ..|++|.+......+
T Consensus 21 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGL-SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 3444555667766788888 78888888776 999999999999999998 457778754322111
Q ss_pred cccccc--CCCCCee-eeEeecc-------cc---c------cccccccccccc--CCCCCCC-CCCHHHHHHHHHhhhh
Q 015085 345 SHLTEA--PVPGTTL-GIVRVEG-------VL---P------AQAKLFDTPGLL--HPNQITT-RLTREEQKLVNINKEL 402 (413)
Q Consensus 345 ~~~t~s--~~pgtT~-~~i~~~~-------~l---~------~~~~liDtpGl~--~~~~~~~-~LS~ge~q~v~i~r~l 402 (413)
..+... .+++.|. +.+.... .. . ....+++..|+. ..++.+. .||+||+||+++|++|
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 111111 1233221 2111100 00 0 012355666774 2456665 5999999999999999
Q ss_pred --cCCccccCCCC
Q 015085 403 --KPRTYRIKVSL 413 (413)
Q Consensus 403 --~~~~~~l~~~~ 413 (413)
.|+.+.||+|+
T Consensus 180 ~~~p~lLlLDEPt 192 (267)
T 2zu0_C 180 VLEPELCILDESD 192 (267)
T ss_dssp HHCCSEEEEESTT
T ss_pred HhCCCEEEEeCCC
Confidence 78999999985
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-12 Score=119.77 Aligned_cols=118 Identities=21% Similarity=0.209 Sum_probs=78.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---------ccc-cccccC-CCCCeeeeE
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---------IVS-HLTEAP-VPGTTLGIV 360 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---------~v~-~~t~s~-~pgtT~~~i 360 (413)
..+++.+ ++... |++++ +|+||+|||||+++|+|+. |++|.+..... .+. .+...+ +..|..+.+
T Consensus 18 ~~il~~v-sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENI-NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEE-EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHH
T ss_pred ceeEEee-eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHH
Confidence 4577887 77778 87666 9999999999999999999 99997643221 122 222211 111222333
Q ss_pred eecccc-c----cccccccccccc-C-CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 361 RVEGVL-P----AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 361 ~~~~~l-~----~~~~liDtpGl~-~-~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+...+ . ....+++..|+. . .++....||+||+||++++++| .|+.+.||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 221000 0 012345555664 2 4677899999999999999999 68899999985
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=119.89 Aligned_cols=132 Identities=18% Similarity=0.252 Sum_probs=83.5
Q ss_pred EEEeEEEeecC-cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 281 V~~vSa~~~~G-i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
+.+-.....|+ ...+++.+ ++....|+++. +|+||+|||||+++|+|++.|.+|.+...... +..
T Consensus 54 i~~~~vs~~y~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 54 IEFENVHFSYADGRETLQDV-SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp EEEEEEEEESSTTCEEEEEE-EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred EEEEEEEEEcCCCCceeeee-eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 55555556663 35578888 78778887666 99999999999999999999999986533222 222
Q ss_pred cccc--CCCCCeeeeEeeccccccc---c---------ccc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEA--PVPGTTLGIVRVEGVLPAQ---A---------KLF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s--~~pgtT~~~i~~~~~l~~~---~---------~li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+.+. -+++|..+.+.+....... . .++ ..| |+. ........|||||+||+++||+| .|+.+
T Consensus 133 v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 133 VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp ECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred EecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 2222 1233334433321100000 0 011 112 332 12345578999999999999999 78999
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.||+|.
T Consensus 213 lLDEPt 218 (306)
T 3nh6_A 213 LLDEAT 218 (306)
T ss_dssp EEECCS
T ss_pred EEECCc
Confidence 999874
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=116.52 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=79.0
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccccccc--CCCC-Cee
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEA--PVPG-TTL 357 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s--~~pg-tT~ 357 (413)
.+++.+ ++....|++++ +|+||+|||||+++|+|+++|+ |.+...... +..+... .+++ |..
T Consensus 14 ~vl~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 567777 77777888766 9999999999999999999999 976533221 1122221 1233 223
Q ss_pred eeEeecccc--c--cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC-------ccccCCCC
Q 015085 358 GIVRVEGVL--P--AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPR-------TYRIKVSL 413 (413)
Q Consensus 358 ~~i~~~~~l--~--~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~-------~~~l~~~~ 413 (413)
+.+.+.... . ....+++..|+. ..++....||+||+||+.++++| .|+ .+.||+|+
T Consensus 92 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPt 161 (249)
T 2qi9_C 92 HYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 161 (249)
T ss_dssp HHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTT
T ss_pred HHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCc
Confidence 333221000 0 012345566665 34677899999999999999999 678 88999885
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-11 Score=115.36 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=79.9
Q ss_pred EEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 281 V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
+.+......|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++++ +|.+...... +
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSI-NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred EEEEEEEEEeCCCCcCceeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 444455566654 2478887 78788888776 999999999999999999976 6875432211 1
Q ss_pred ccccccC--CCCCeeeeEeeccc-ccc--cccccccccccC------------CCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGV-LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~-l~~--~~~liDtpGl~~------------~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+...+ +++|..+.+.+... ... ...+++..|+.. .++....||+||+||+++||+| .|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 1221111 12222233322100 000 011122222210 1345678999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|+
T Consensus 176 lllLDEPt 183 (260)
T 2ghi_A 176 IVIFDEAT 183 (260)
T ss_dssp EEEEECCC
T ss_pred EEEEECcc
Confidence 99999885
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.7e-11 Score=122.76 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=75.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCC---CCCeeeeEeecc--cccc----cc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV---PGTTLGIVRVEG--VLPA----QA 370 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~---pgtT~~~i~~~~--~l~~----~~ 370 (413)
++...+|++++ +|+||+|||||+++|+|+.+|++|.+......+........ ..+..+.+.... .... ..
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 33446677766 99999999999999999999999986543333333322221 122222221100 0000 12
Q ss_pred ccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 371 KLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 371 ~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.+++..|+. ..++.+..|||||+||+++||+| .|+.+.||+|.
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT 413 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 345556665 45688999999999999999999 68899999884
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-11 Score=116.77 Aligned_cols=118 Identities=16% Similarity=0.252 Sum_probs=74.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecccccc-
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEGVLPA- 368 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~~l~~- 368 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|+++|++|.+.... .+..+... .+++|..+.+. ......
T Consensus 51 ~~vl~~i-sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~l~~~tv~enl~-~~~~~~~ 127 (290)
T 2bbs_A 51 TPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RISFCSQNSWIMPGTIKENII-GVSYDEY 127 (290)
T ss_dssp CCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-CEEEECSSCCCCSSBHHHHHH-TTCCCHH
T ss_pred ceEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-EEEEEeCCCccCcccHHHHhh-CcccchH
Confidence 3567777 77778888776 999999999999999999999999765332 22233222 13444444433 111110
Q ss_pred -ccccccccccc------------CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 369 -QAKLFDTPGLL------------HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 369 -~~~liDtpGl~------------~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...+++..|+. ..++....||+||+||+.+||+| .|+.+.||+|+
T Consensus 128 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 128 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 00111112221 01123478999999999999999 68889999885
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-10 Score=121.70 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=84.7
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+..++.. +.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i-~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHV-SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420 (582)
T ss_pred EEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE
Confidence 555556666753 4578888 77778887766 99999999999999999999999986533211 22
Q ss_pred cccccC--CCCCeeeeEeecc--cccc--cccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEAP--VPGTTLGIVRVEG--VLPA--QAKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s~--~pgtT~~~i~~~~--~l~~--~~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+.+ +++|..+.+.+.. .... ....++..|+ . .-+.....|||||+||+.+||++ .|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ 500 (582)
T 3b5x_A 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAP 500 (582)
T ss_pred EEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 222221 2444445444311 0000 0112222232 1 11234578999999999999999 688
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 501 illlDEpt 508 (582)
T 3b5x_A 501 VLILDEAT 508 (582)
T ss_pred EEEEECcc
Confidence 99999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=120.86 Aligned_cols=124 Identities=17% Similarity=0.217 Sum_probs=75.1
Q ss_pred eecCcc-hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc---------ccccccc---------c
Q 015085 288 KNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSH---------L 347 (413)
Q Consensus 288 ~~~Gi~-~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~---------~~~~v~~---------~ 347 (413)
+.||.. ..+..+ + ....|++++ +|+||+|||||+++|+|++.|++|.+.. ....+.. .
T Consensus 99 ~~yg~~~~~l~~v-s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 176 (607)
T 3bk7_A 99 HRYGVNAFVLYRL-P-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176 (607)
T ss_dssp EECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSC
T ss_pred EEECCCCeeeCCC-C-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhc
Confidence 445543 245556 3 456677666 9999999999999999999999997410 0000000 0
Q ss_pred ccc-----------CCCCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 348 TEA-----------PVPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 348 t~s-----------~~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
... .+.++..+.+...........+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 177 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPT 256 (607)
T 3bk7_A 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPS 256 (607)
T ss_dssp CCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred ceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 000 00111111110000000112355566765 35688999999999999999999 78999999884
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-10 Score=118.61 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=75.3
Q ss_pred EeecCcch-hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc---------cccccccc---------
Q 015085 287 VKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVSH--------- 346 (413)
Q Consensus 287 ~~~~Gi~~-Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~---------~~~~~v~~--------- 346 (413)
.+.||... .+..+ + ....|++++ +|+||+|||||+++|+|.+.|++|.+. .....+..
T Consensus 28 s~~yg~~~~~l~~v-s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 105 (538)
T 1yqt_A 28 VHRYGVNAFVLYRL-P-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105 (538)
T ss_dssp EEECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTS
T ss_pred EEEECCccccccCc-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHh
Confidence 34555432 45556 3 456677766 999999999999999999999999631 00000000
Q ss_pred cccc-------CC----CCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCC
Q 015085 347 LTEA-------PV----PGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVS 412 (413)
Q Consensus 347 ~t~s-------~~----pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~ 412 (413)
.... .. .++..+.+...........+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|
T Consensus 106 ~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEP 185 (538)
T 1yqt_A 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185 (538)
T ss_dssp CCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred hhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 0000 00 011000000000000112355566765 35788999999999999999999 7899999988
Q ss_pred C
Q 015085 413 L 413 (413)
Q Consensus 413 ~ 413 (413)
.
T Consensus 186 T 186 (538)
T 1yqt_A 186 S 186 (538)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-10 Score=122.27 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=85.5
Q ss_pred eEEEeEEEeecC--cchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~G--i~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+.+....|+ ...+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...... +
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGV-NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 356666666673 45678888 77778887666 99999999999999999999999986533222 2
Q ss_pred ccccccC--CCCCeeeeEeeccccccc---------cc---cc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEAP--VPGTTLGIVRVEGVLPAQ---------AK---LF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s~--~pgtT~~~i~~~~~l~~~---------~~---li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+.+ +++|..+.+.+....... .. ++ ..| |+. ..++....|||||+||+++||++ .|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 2222221 234444443321100000 00 11 112 443 12455678999999999999999 788
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 500 illlDEpt 507 (587)
T 3qf4_A 500 VLILDDCT 507 (587)
T ss_dssp EEEEESCC
T ss_pred EEEEECCc
Confidence 99999874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-10 Score=119.22 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=67.8
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc-----------cccccccc---------cc---------c--C
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-----------EKNIVSHL---------TE---------A--P 351 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~-----------~~~~v~~~---------t~---------s--~ 351 (413)
..+|+++. +|+||+|||||+|+|+|++.|+.|.+.. ....+... .. . .
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 35677776 9999999999999999999999997621 00000000 00 0 0
Q ss_pred CCCCeeeeEeeccccccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..++..+.+...........+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|.
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPt 166 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPS 166 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 0111000000000000112344555664 35688999999999999999999 68999999884
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-10 Score=120.81 Aligned_cols=133 Identities=15% Similarity=0.234 Sum_probs=85.6
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+.. +
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeee-EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3555566666653 4578888 78778887766 99999999999999999999999986533221 2
Q ss_pred cccccc--CCCCCeeeeEeeccccccc---cccc----------ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVLPAQ---AKLF----------DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l~~~---~~li----------Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+.+. -+++|..+.+.+....... .... ..| |+. .-+.....|||||+||+++||++ +|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 222222 2345555554331110000 0011 112 332 12334568999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 498 illlDEpt 505 (578)
T 4a82_A 498 ILILDEAT 505 (578)
T ss_dssp EEEEESTT
T ss_pred EEEEECcc
Confidence 99999884
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-10 Score=120.95 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=84.1
Q ss_pred eEEEeEEEeecCc-chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 280 ~V~~vSa~~~~Gi-~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
.+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+.. +.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDI-TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSE-EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCCCccccce-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 4666666667754 4577887 77778887766 99999999999999999999999986533222 22
Q ss_pred ccccc--CCCCCeeeeEeecccccc---cccccccccc-----------cC-CCCCCCCCCHHHHHHHHHhhhh--cCCc
Q 015085 346 HLTEA--PVPGTTLGIVRVEGVLPA---QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~~l~~---~~~liDtpGl-----------~~-~~~~~~~LS~ge~q~v~i~r~l--~~~~ 406 (413)
.+.+. -+++|..+.+.+...... .....+..++ .. -......|||||+||+++||++ .|+.
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 22222 234554554433110000 0111222222 10 0112267999999999999999 7889
Q ss_pred cccCCCC
Q 015085 407 YRIKVSL 413 (413)
Q Consensus 407 ~~l~~~~ 413 (413)
+.||+|.
T Consensus 513 lllDEpt 519 (598)
T 3qf4_B 513 LILDEAT 519 (598)
T ss_dssp EEECCCC
T ss_pred EEEECCc
Confidence 9999884
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.5e-10 Score=119.36 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCC-CeeeeEeec-c-ccc-c--ccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPG-TTLGIVRVE-G-VLP-A--QAK 371 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pg-tT~~~i~~~-~-~l~-~--~~~ 371 (413)
++....|++++ +|+||+|||||+++|+|+++|++|.+... ..+..+.... .+. |..+.+... . ... . ...
T Consensus 376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 454 (607)
T 3bk7_A 376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTE 454 (607)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 33446677766 99999999999999999999999986531 1222332221 122 222222110 0 000 0 123
Q ss_pred cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 455 ~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt 499 (607)
T 3bk7_A 455 LLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS 499 (607)
T ss_dssp THHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred HHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 55556664 34678899999999999999999 67899999884
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-10 Score=117.90 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=85.5
Q ss_pred EEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cc
Q 015085 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VS 345 (413)
Q Consensus 281 V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~ 345 (413)
+.+......|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+..++.. +.
T Consensus 342 i~~~~v~~~y~~~~~~~l~~v-~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 342 LEFRNVTFTYPGREVPALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEcCCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 555666667763 4678888 77778887666 99999999999999999999999976533221 22
Q ss_pred ccccc--CCCCCeeeeEeecc--cccc--cccccccc-----------ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 346 HLTEA--PVPGTTLGIVRVEG--VLPA--QAKLFDTP-----------GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 346 ~~t~s--~~pgtT~~~i~~~~--~l~~--~~~liDtp-----------Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
.+.+. -+++|..+.+.+.. .... ....++.. |+. .-+.....|||||+||+.+||++ .|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 421 LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 22222 13454455544311 0000 01112222 222 12334578999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 501 illlDEpt 508 (582)
T 3b60_A 501 ILILDEAT 508 (582)
T ss_dssp EEEEETTT
T ss_pred EEEEECcc
Confidence 99999884
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.1e-10 Score=116.07 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCee-eeEeec--cccc---cccc
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTL-GIVRVE--GVLP---AQAK 371 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~-~~i~~~--~~l~---~~~~ 371 (413)
++...+|+++. +|+||+|||||+++|+|+.+|.+|.+... ..+..+.... .+..|. +.+... .... ....
T Consensus 306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~ 384 (538)
T 1yqt_A 306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTE 384 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHH
Confidence 33446677766 99999999999999999999999976531 1222222221 122222 211110 0000 0123
Q ss_pred cccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 372 LFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 372 liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++..|+. ..++.+..|||||+||+++|++| .|+.+.||+|.
T Consensus 385 ~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 385 LLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp TTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred HHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 56666664 34688899999999999999999 67889999884
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-09 Score=115.76 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=67.7
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc---cccccc------------ccCC-----CCC-------
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---IVSHLT------------EAPV-----PGT------- 355 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~---~v~~~t------------~s~~-----pgt------- 355 (413)
...|+++. +|+||+|||||+|+|+|++.|++|.+..... .+.... .... +..
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 35677766 9999999999999999999999997631100 000000 0000 000
Q ss_pred eee-------eEeecccc--ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 TLG-------IVRVEGVL--PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T~~-------~i~~~~~l--~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+ .+...... .....+++..|+. ..++.+..||+||+||+++|++| .|+.+.||+|.
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 000 00000000 0112345556665 35788999999999999999999 68899999884
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.8e-09 Score=110.66 Aligned_cols=105 Identities=21% Similarity=0.227 Sum_probs=66.2
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc---CCCCCeeeeEeeccc--c-cc--cccccccccc
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA---PVPGTTLGIVRVEGV--L-PA--QAKLFDTPGL 378 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s---~~pgtT~~~i~~~~~--l-~~--~~~liDtpGl 378 (413)
++++ +|+||+|||||+++|+|+++|++|..... ..+..+... .++++..+.+..... . .. ...+++..|+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~-~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK-LNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCS-CCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccC-CcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 5555 99999999999999999999999852211 111111111 112222221110000 0 00 1124455566
Q ss_pred c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 379 L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 379 ~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. ..++.+..|||||+||+++||+| .|+.+.||+|.
T Consensus 458 ~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 458 DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4 35788999999999999999999 68899999984
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-10 Score=108.97 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=54.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC-------
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH------- 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~------- 380 (413)
.+.++|+||+|||||||+|+|...+.+|.+......+... ......+.+.....+.....++|++|+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 4677999999999999999999999988654322111100 00011111111111223456788887642
Q ss_pred ------------CCCCCCCCCHHHHHHHHHhhhhcCCccccCCC
Q 015085 381 ------------PNQITTRLTREEQKLVNINKELKPRTYRIKVS 412 (413)
Q Consensus 381 ------------~~~~~~~LS~ge~q~v~i~r~l~~~~~~l~~~ 412 (413)
.+.....||+|++|++.++|++.. .|.|+++
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~-lllldep 122 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC-LYFISPT 122 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE-EEEECCC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee-eEEEecC
Confidence 122346899999999999998765 7777765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-09 Score=117.12 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=85.9
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------ 343 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------ 343 (413)
.|.+-.....|+. ..+++.+ ++..++|+++. +|+||+|||||+++|+|+++|++|.+...+..
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGL-NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEE-EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 4666666677753 2478888 78778887666 99999999999999999999999976533322
Q ss_pred cccccccC--CCCCeeeeEeeccc-ccc-c----------cccc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEAP--VPGTTLGIVRVEGV-LPA-Q----------AKLF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s~--~pgtT~~~i~~~~~-l~~-~----------~~li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+.+.+ +++|..+.+.+... ... . ..++ ..| |+. ........|||||+||+++||+| .|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 22222222 34555555443110 000 0 0011 112 222 12344568999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|.
T Consensus 546 ~iliLDEpt 554 (1284)
T 3g5u_A 546 KILLLDEAT 554 (1284)
T ss_dssp SEEEEESTT
T ss_pred CEEEEECCC
Confidence 999999874
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.4e-08 Score=111.71 Aligned_cols=132 Identities=17% Similarity=0.289 Sum_probs=81.7
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------- 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------- 344 (413)
.+.+-.....|+.. .+++.+ ++...+|+++. +|+||+|||||+++|+|+++|.+|.+..+...+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~v-sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGL-SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSC-CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 35566666666532 477887 77778887666 999999999999999999999999765333222
Q ss_pred -ccccccC--CCCCeeeeEeecccc---cc-c----------ccccc-cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--
Q 015085 345 -SHLTEAP--VPGTTLGIVRVEGVL---PA-Q----------AKLFD-TP-GLL-HPNQITTRLTREEQKLVNINKEL-- 402 (413)
Q Consensus 345 -~~~t~s~--~pgtT~~~i~~~~~l---~~-~----------~~liD-tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l-- 402 (413)
..+.+.+ +.+|..+.+.+.... .. . ..+++ .| |+. .-......|||||+||+++||+|
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 2222221 233433433221000 00 0 01111 11 221 11223467999999999999999
Q ss_pred cCCccccCCC
Q 015085 403 KPRTYRIKVS 412 (413)
Q Consensus 403 ~~~~~~l~~~ 412 (413)
.|+.+.||+|
T Consensus 1189 ~p~iLiLDEp 1198 (1284)
T 3g5u_A 1189 QPHILLLDEA 1198 (1284)
T ss_dssp CCSSEEEESC
T ss_pred CCCEEEEeCC
Confidence 7899999987
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.5e-09 Score=117.92 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=84.7
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccc------------c
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN------------I 343 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~------------~ 343 (413)
.|.+-++.-.|.. ..+++.+ ++..++|+.++ ||++|+|||||+++|+|.+.|.+|.+.-++. .
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~i-sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGM-NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEE-EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeece-EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 4777777777743 3478888 77777787655 9999999999999999999999997653332 2
Q ss_pred cccccccCC--CCCeeeeEeecccccccc-------------cccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQA-------------KLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 344 v~~~t~s~~--pgtT~~~i~~~~~l~~~~-------------~liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
+..+.+.++ .||-++++.+.......- .+-..| |... -...-..|||||+||+++||++ .+
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 333333332 444455543311000000 011112 2211 1122356999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+++
T Consensus 574 ~IliLDE~t 582 (1321)
T 4f4c_A 574 KILLLDEAT 582 (1321)
T ss_dssp SEEEEESTT
T ss_pred CEEEEeccc
Confidence 899998874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=110.61 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=81.3
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHc-cCcCCCCCCcccccccccccc---cCCCC
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAK-SVDAGRGGDGEEKNIVSHLTE---APVPG 354 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g-~~~~~~G~~~~~~~~v~~~t~---s~~pg 354 (413)
.+...+....||...+++.+ ++...+|++++ +|+||+|||||+++|+| .. .|........+..+.. ...+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~v-sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKT-QLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred eeEEeeEEEEECCEEeEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEcccccccccC
Confidence 46666777888877888888 88888888776 99999999999999984 22 1110000000011111 11122
Q ss_pred Ce-eeeEeecc--ccccccccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TT-LGIVRVEG--VLPAQAKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT-~~~i~~~~--~l~~~~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.| .+.+.... .......+++..|+. ..++....|||||+||+.++++| .|+.+.||+|+
T Consensus 511 ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp SBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred CcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 22 22221100 000112356666773 34678899999999999999999 78999999884
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=113.14 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=83.5
Q ss_pred eEEEeEEEeecCc---chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCCccccccc-----------
Q 015085 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------- 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi---~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------- 344 (413)
.|.+-+..-.|.. ..+++.+ ++..++|+.+ +||++|+|||||+++|++++.|.+|.+..++..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGL-SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEE-EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccce-eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 4666666666632 2478888 7777777655 5999999999999999999999999865443222
Q ss_pred -ccccccC--CCCCeeeeEeeccccc-cc------c---------c-ccccc-cccC-CCCCCCCCCHHHHHHHHHhhhh
Q 015085 345 -SHLTEAP--VPGTTLGIVRVEGVLP-AQ------A---------K-LFDTP-GLLH-PNQITTRLTREEQKLVNINKEL 402 (413)
Q Consensus 345 -~~~t~s~--~pgtT~~~i~~~~~l~-~~------~---------~-liDtp-Gl~~-~~~~~~~LS~ge~q~v~i~r~l 402 (413)
..+.+.+ +.||-++++.+- ++ .. . . +-..| |+.. -...-..||+||+||+++||+|
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~g--ld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYG--LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSS--SCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCEeeCccHHHHHhcc--CCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 2233332 355655555431 11 00 0 0 11122 2221 0122356999999999999999
Q ss_pred --cCCccccCCC
Q 015085 403 --KPRTYRIKVS 412 (413)
Q Consensus 403 --~~~~~~l~~~ 412 (413)
+++.+.||++
T Consensus 1233 lr~~~ILiLDEa 1244 (1321)
T 4f4c_A 1233 VRNPKILLLDEA 1244 (1321)
T ss_dssp HSCCSEEEEESC
T ss_pred HhCCCEEEEeCc
Confidence 7888888875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-09 Score=114.20 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.9
Q ss_pred EeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcc
Q 015085 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE 339 (413)
Q Consensus 283 ~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~ 339 (413)
+.+....|+. ..+++.+ ++....|++++ +|+||+|||||+++|+|++.|++|.+..
T Consensus 674 v~nLs~~Y~g~~~~iL~dV-Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~ 732 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDI-NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732 (986)
T ss_dssp EEEEEECCTTCSSCSEEEE-EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEeeEEEeCCCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3444556643 4577777 77777887766 9999999999999999999999987643
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-08 Score=85.94 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=63.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+... ...+..++... ..+. . ....|+++|+||+|+............|. +
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i-----~~~~-~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 148 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDT--FVKLDNWLNEL-----ETYC-T--RNDIVNMLVGNKIDKENREVDRNEGLKFA----R 148 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHH-----TTCC-S--CSCCEEEEEEECTTSSSCCSCHHHHHHHH----H
T ss_pred HHhccCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHhc-C--cCCCcEEEEEECCcCcccccCHHHHHHHH----H
Confidence 34567899999999987421 12233333221 0000 0 01248999999999965544444444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
..+ ..++.+||+++.|++++++.|.+........+--+..|+||||
T Consensus 149 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 149 KHS----MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred HcC----CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 333 3588999999999999999887765554445556778999997
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-09 Score=104.97 Aligned_cols=73 Identities=32% Similarity=0.294 Sum_probs=47.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCCCCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQIT 385 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~~~~~ 385 (413)
..+.++|.+|||||||+|.|++... .+...+++|.+........ .....++||||+.. ...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~ 229 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP----------------EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD--RPI 229 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC----------------EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSS--SCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCeeeceeEEEEEecCceEEEEeCCCccc--cch
Confidence 3567799999999999999986431 1233455555432211111 22468999999975 345
Q ss_pred CCCCHHHHHHHH
Q 015085 386 TRLTREEQKLVN 397 (413)
Q Consensus 386 ~~LS~ge~q~v~ 397 (413)
..++.++.+.+.
T Consensus 230 ~~~~~~~~~~~~ 241 (357)
T 2e87_A 230 SERNEIEKQAIL 241 (357)
T ss_dssp TTSCHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 678888877654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.1e-08 Score=103.61 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=32.7
Q ss_pred cccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCC--ccccCCCC
Q 015085 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR--TYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~--~~~l~~~~ 413 (413)
++..|+.. .++.+..|||||+||+.+||+| .|+ .+.||+|.
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPt 232 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPS 232 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTT
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence 44456542 4688999999999999999999 455 89999984
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-08 Score=102.08 Aligned_cols=110 Identities=13% Similarity=0.034 Sum_probs=65.1
Q ss_pred hhcccCCcE-EEEcCCCCcHHHHHHHHHccCcCCCC-C-Ccccc---cccccccccC-----CC-CCeeeeEeeccc---
Q 015085 301 DLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRG-G-DGEEK---NIVSHLTEAP-----VP-GTTLGIVRVEGV--- 365 (413)
Q Consensus 301 ~l~~~~g~~-~~vG~ng~GKSTLin~L~g~~~~~~G-~-~~~~~---~~v~~~t~s~-----~p-gtT~~~i~~~~~--- 365 (413)
++....|++ .++|+||+|||||+++|+|+..+.+| . +..+. ..+..+.... .+ .+..+.+ +...
T Consensus 132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~ 210 (460)
T 2npi_A 132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQSLTS 210 (460)
T ss_dssp HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBS
T ss_pred ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-ccccccc
Confidence 444455654 45999999999999999999988888 6 43221 1111111110 00 0111111 1000
Q ss_pred ----ccccccccccccccCCCCCCCCCCHHHHHHHHHhhh--h--cCCc----cccCC-C
Q 015085 366 ----LPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE--L--KPRT----YRIKV-S 412 (413)
Q Consensus 366 ----l~~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~--l--~~~~----~~l~~-~ 412 (413)
......+++..|+..... ...||+|++||++++++ | .|+. +.||+ |
T Consensus 211 ~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 211 GATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp SCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred CcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 011234555566653322 67899999999999999 7 5667 88887 5
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.3e-09 Score=95.73 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=32.8
Q ss_pred cCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 290 WGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 290 ~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+|...+++.+ ..|++++ +|+||+|||||+++|+|+ .|++|.+.
T Consensus 10 ~g~~~~l~~i-----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~ 53 (208)
T 3b85_A 10 LGQKHYVDAI-----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS 53 (208)
T ss_dssp HHHHHHHHHH-----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred HhHHHHHHhc-----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence 3444455555 3456554 999999999999999999 99999764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-08 Score=100.19 Aligned_cols=88 Identities=17% Similarity=0.164 Sum_probs=53.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc-----
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL----- 379 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~----- 379 (413)
..+.+.++|+||||||||||+|+|+..+++|.+....... +. ...+... .......+.|+||+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~---t~-------~~~v~q~-~~~~~ltv~D~~g~~~~~~~ 136 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV---TM-------ERHPYKH-PNIPNVVFWDLPGIGSTNFP 136 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C-------CCEEEEC-SSCTTEEEEECCCGGGSSCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec---ce-------eEEeccc-cccCCeeehHhhcccchHHH
Confidence 3345666999999999999999999999999654222111 00 0111110 111233445555442
Q ss_pred -----------CCCCCCCCCCHH--HHHHHHHhhhhcC
Q 015085 380 -----------HPNQITTRLTRE--EQKLVNINKELKP 404 (413)
Q Consensus 380 -----------~~~~~~~~LS~g--e~q~v~i~r~l~~ 404 (413)
..+.... ||+| ++|++.++++|..
T Consensus 137 ~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 137 PDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp HHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHh
Confidence 1222223 8888 9999999999954
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.9e-07 Score=88.13 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=72.5
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCC-CCCC
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLL-PSSL 257 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl-~~~~ 257 (413)
..+.+.+.+.+...+..+|+|++|+|+.+.....+..+ .+.+... + .|+++|+||+|+. +.
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~----------~-----~pvilV~NK~Dl~~~~-- 138 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL----------N-----KPVIVVINKIDKIGPA-- 138 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG----------C-----CCEEEEEECGGGSSSG--
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc----------C-----CCEEEEEECccCCCCH--
Confidence 34556666777778888999999999987654333333 4444321 2 3899999999998 33
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
..+..+...+.+..+ .+..++.+||+++.|+++|++.|.+.....
T Consensus 139 --~~~~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 139 --KNVLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp --GGGHHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred --HHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 223344444444443 235799999999999999999997776543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-07 Score=81.66 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccc---cCCCCCC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL---LHPNQIT 385 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl---~~~~~~~ 385 (413)
+.++|+||+|||||+++|+|.+...-. ........ ....+...+++.+.. .....++...+. ...++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~-----g~~~~~~~-~~~~~~~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI-----GFWTEEVR-DPETKKRTGFRIITT--EGKKKIFSSKFFTSKKLVGSYG 74 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE-----EEEEEEEC-------CCEEEEEET--TCCEEEEEETTCCCSSEETTEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC-----CEEhhhhc-cccccceeEEEeecC--cHHHHHHHhhcCCccccccccc
Confidence 567999999999999999988731100 00000000 000011111111100 000001110011 1124556
Q ss_pred CCCCHHHHHHHHHhhh-----h--cCCccccCC
Q 015085 386 TRLTREEQKLVNINKE-----L--KPRTYRIKV 411 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~-----l--~~~~~~l~~ 411 (413)
..||+||+|++.++++ + .++.+.||+
T Consensus 75 ~~lSgG~~qr~~la~aa~~~~l~~~p~llilDE 107 (178)
T 1ye8_A 75 VNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107 (178)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCcCHHHHHHHHHHhhccccccccCCCEEEEeC
Confidence 7799999999999995 5 678888888
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-07 Score=82.63 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 386 TRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 386 ~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
...|+|++|++.+|+++ .|+.+.+|+|+
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt 111 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPE 111 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCH
Confidence 34589999999999999 57888888873
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-06 Score=76.43 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=62.3
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+........+++|++|+|+.+........+.+++... + .|+++|+||+|+.... ......+..+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~i~v~nK~Dl~~~~-~~~~~~~~~~ 159 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------N-----IPFTIVLTKMDKVKMS-ERAKKLEEHR 159 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------T-----CCEEEEEECGGGSCGG-GHHHHHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEEChhcCChH-HHHHHHHHHH
Confidence 3344445667999999999876544444555555432 2 3899999999998542 1122222233
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+...+ ...++.+||+++.|++++++.|.+..
T Consensus 160 ~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 160 KVFSKYG---EYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp HHHHSSC---CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhhcC---CCceEEEecCCCCCHHHHHHHHHHHh
Confidence 3333222 24689999999999999999886544
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=79.38 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=61.8
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
........+|+|++|+|+.+........+.+++... + .|+++|+||+|+...... ......+.+
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~----------~-----~p~i~v~nK~Dl~~~~~~-~~~~~~~~~ 171 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT----------G-----KPIHSLLTKCDKLTRQES-INALRATQK 171 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG----------C-----CCEEEEEECGGGSCHHHH-HHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc----------C-----CCEEEEEeccccCChhhH-HHHHHHHHH
Confidence 333445668899999999875443344455554421 2 389999999999853111 111111222
Q ss_pred HHHHc---CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 269 RARED---GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 269 ~~~~~---g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+... +......++.+||+++.|+++|++.|.+...
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 22221 1012357899999999999999999876554
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-06 Score=74.55 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=57.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
......|++++|+|+.+........+.+++... + .|+++|+||+|+.... .+.....+..+
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~i~v~nK~Dl~~~~----~~~~~~~~~~~ 161 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY----------G-----IPVIVIATKADKIPKG----KWDKHAKVVRQ 161 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------T-----CCEEEEEECGGGSCGG----GHHHHHHHHHH
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEECcccCChH----HHHHHHHHHHH
Confidence 334455999999999876443333444544321 2 3899999999998542 12221222222
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+......++.+||+++.|++++++.|.+.
T Consensus 162 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 162 TLNIDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp HHTCCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 1221123478999999999999999888544
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-06 Score=83.01 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=69.7
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
..+.+.+...+...+..+|++++|+|+.+.....+..+.+.+... ..+ .|+++|+||+|+...
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~--------~~~-----~p~ilV~NK~Dl~~~---- 132 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL--------VGK-----VPILLVGNKLDAAKY---- 132 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGG--------TTT-----SCEEEEEECGGGCSS----
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhh--------cCC-----CCEEEEEECcccCCc----
Confidence 345555667777889999999999999876443344444444321 002 389999999999754
Q ss_pred HH-HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 260 TR-FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 260 ~~-l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.. +.++++.. ..+..++.+||+++.|+++|++.|......
T Consensus 133 ~~~~~~~~~~~------~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 133 PEEAMKAYHEL------LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHT------STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred hHHHHHHHHHh------cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 22 33333322 134578999999999999999998765544
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-06 Score=86.49 Aligned_cols=57 Identities=30% Similarity=0.301 Sum_probs=42.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.|.+||.+|||||||||+|++.. ..++.+|+||++.+.-.... +....++||||+..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~----------------~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE----------------SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC----------------CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC----------------CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 57889999999999999999532 23467899998775432222 33578999999974
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.8e-07 Score=77.82 Aligned_cols=106 Identities=18% Similarity=0.046 Sum_probs=62.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....+|.+++|+|+.+.. + ...+..++..... .... ...|+++|+||+|+... ....+....+. +
T Consensus 74 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~ 139 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIK-S-FEVIKVIHGKLLD-----MVGK---VQIPIMLVGNKKDLHMERVISYEEGKALA----E 139 (181)
T ss_dssp GTTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----HC-------CCEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred HHhcCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----hcCC---CCCCEEEEEECccchhcceecHHHHHHHH----H
Confidence 456789999999998742 1 1223333221100 0000 12389999999999644 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
..+ ..++.+||+++.|++++++.|.+..... -|..++||||
T Consensus 140 ~~~----~~~~~~Sa~~~~~v~~l~~~l~~~~~~~-----~~~~~~gkss 180 (181)
T 3t5g_A 140 SWN----AAFLESSAKENQTAVDVFRRIILEAEKM-----DGACSQGKSS 180 (181)
T ss_dssp HTT----CEEEECCTTSHHHHHHHHHHHHHHHHTC----------CCBSC
T ss_pred HhC----CcEEEEecCCCCCHHHHHHHHHHHHHHh-----cCCcccCcCC
Confidence 344 3688999999999999999887655443 2677888875
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=3.9e-06 Score=85.46 Aligned_cols=96 Identities=22% Similarity=0.296 Sum_probs=64.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCC-ChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL-SPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~-~~~~l~~~~~~ 268 (413)
....++.+|++++|+|+.+.....+..+.+++... ++ ++++|+||+|+..... ..+.+.+++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~----------~~-----~~ilv~NK~Dl~~~~~~~~~~~~~~~~~ 335 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA----------GK-----AVVIVVNKWDAVDKDESTMKEFEENIRD 335 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT----------TC-----EEEEEEECGGGSCCCSSHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc----------CC-----CEEEEEEChhcCCCchHHHHHHHHHHHH
Confidence 34466778999999999885544444455444321 33 8999999999986532 22334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+... ....++.+||++|.|++++++.+.+..
T Consensus 336 ~~~~~---~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 336 HFQFL---DYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp HCGGG---TTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred hcccC---CCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 32222 235789999999999999999886544
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-07 Score=89.08 Aligned_cols=104 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------cccccc---CCCC-CeeeeE
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------SHLTEA---PVPG-TTLGIV 360 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~~~t~s---~~pg-tT~~~i 360 (413)
..+|++++ +|+||||||||++.|+|.+.+..|.+....... ..+... ..|. +..+.+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 34566665 999999999999999999988877644221111 010000 0000 001111
Q ss_pred eecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhhc--CC--ccccC
Q 015085 361 RVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKELK--PR--TYRIK 410 (413)
Q Consensus 361 ~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l~--~~--~~~l~ 410 (413)
...........++|+.|+.. .++...+|| +|++.++|++. |+ .+.+|
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 11000111245789999863 345566777 78999999995 66 66665
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=98.03 E-value=8.7e-07 Score=94.67 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=28.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcC-----CccccCCCC
Q 015085 381 PNQITTRLTREEQKLVNINKELKP-----RTYRIKVSL 413 (413)
Q Consensus 381 ~~~~~~~LS~ge~q~v~i~r~l~~-----~~~~l~~~~ 413 (413)
.++.+..|||||+||+.+||+|.. +.+.||+|.
T Consensus 537 ~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred ccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 367889999999999999999953 478999884
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-06 Score=72.91 Aligned_cols=91 Identities=23% Similarity=0.204 Sum_probs=60.3
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
+.+.....+..+|++++|+|+.+........+.+++... + .|+++|+||+|+.... +...++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------~-----~p~ilv~nK~Dl~~~~---~~~~~~ 130 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK----------G-----KPVILVATKVDDPKHE---LYLGPL 130 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH----------T-----CCEEEEEECCCSGGGG---GGCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc----------C-----CCEEEEEECcccccch---HhHHHH
Confidence 344455667889999999999885433334444444321 2 2899999999997431 122222
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
. ..+ ...++.+||+++.|++++++.+.+.
T Consensus 131 ----~-~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 131 ----Y-GLG---FGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp ----G-GGS---SCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred ----H-hCC---CCCeEEEecccCCChHHHHHHHHHh
Confidence 1 222 2357899999999999999887543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=72.01 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=58.2
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|++++|+|+.+...-.......++.... .. ....|+++|+||+|+..............+.+.+..
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~--------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIK--------SV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHH--------TC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHH--------Hh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence 56779999999998754322222233332210 00 012389999999999865322222223333344433
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+ ....++.+||+++.|++++++.|.+..
T Consensus 176 ~--~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 176 K--NPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp C--SCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred C--CCceEEEEecccCCCHHHHHHHHHHHH
Confidence 2 124689999999999999998885543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.98 E-value=5.3e-06 Score=72.52 Aligned_cols=58 Identities=34% Similarity=0.420 Sum_probs=38.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|+|.+... ..++..+++|.+.......+. ....++||||+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREA---------------AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------ceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 577799999999999999996431 112445777765533222222 2467899999864
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.7e-06 Score=77.57 Aligned_cols=58 Identities=28% Similarity=0.286 Sum_probs=42.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~~ 381 (413)
.+.++|.+|||||||+|.|+|.. ..++.+||+|.+.....+.. .....++||||+...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~----------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC----------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 57789999999999999999532 24567889988765433222 335679999999753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.7e-06 Score=78.35 Aligned_cols=57 Identities=30% Similarity=0.393 Sum_probs=41.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||||.|+|.. ..++.+||+|.+.....+... ....++||||+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~----------------~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~ 60 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN----------------QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYS 60 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccc
Confidence 57789999999999999998532 234577899977654332222 3567999999964
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=1e-05 Score=81.92 Aligned_cols=95 Identities=23% Similarity=0.306 Sum_probs=60.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-hHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~-~~~l~~~~~~~ 269 (413)
...++.+|++++|+|+.+.....+..+...+.. .++ ++++|+||+|+...... .+.+.+.+.
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~----------~~~-----~iiiv~NK~Dl~~~~~~~~~~~~~~~~-- 314 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----------AGK-----AVVIVVNKWDAVDKDESTMKEFEENIR-- 314 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----EEEEEEECGGGSCCCTTHHHHHHHHHH--
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH----------cCC-----cEEEEEECccCCCcchHHHHHHHHHHH--
Confidence 345667899999999998654333333333321 133 89999999999865321 122322222
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.........++.+||++|.|++++++.+.+..
T Consensus 315 -~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 315 -DHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp -HHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -HhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 222111224689999999999999998886544
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=6.5e-06 Score=78.17 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=40.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||||.|+|.. ..++.+||+|.+.....+.......++||||...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~----------------~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN----------------QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS 61 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC----------------CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence 57779999999999999999632 1235678888765443222233577999999864
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-06 Score=73.47 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.2
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+++.+ ++....|+++. +|+||+|||||+++|+|.+ +.+|.+.
T Consensus 21 ~~l~~v-sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 21 FAEILL-KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHH-HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHHhcc-ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 344455 66667787666 9999999999999999999 8888644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-06 Score=84.63 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=70.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.....+..+.+++.. .++ ++++|+||+|++.... ....++.+...+
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~----------~~~-----~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~ 321 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER----------RGR-----ASVVVFNKWDLVVHRE--KRYDEFTKLFRE 321 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----EEEEEEECGGGSTTGG--GCHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cCC-----CEEEEEECccCCCchh--hHHHHHHHHHHH
Confidence 44566899999999987543223333333322 133 8999999999986421 112223222222
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.........++.+||++|.|+++|++.+.+..... +.-=+|+.+|.+++..
T Consensus 322 ~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~--------~~~i~t~~ln~~l~~~ 372 (439)
T 1mky_A 322 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY--------TTKVPSSAINSALQKV 372 (439)
T ss_dssp HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH--------TCCCCHHHHHHHHHHH
T ss_pred HhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh--------cccCCHHHHHHHHHHH
Confidence 22211234689999999999999999886544321 1112789999888543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=6e-07 Score=88.67 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=60.7
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc------------------ccccccC---CCC-CeeeeE
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV------------------SHLTEAP---VPG-TTLGIV 360 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v------------------~~~t~s~---~pg-tT~~~i 360 (413)
..+|++++ +|+||||||||++.|+|++.+..|.+......+ ..+.... .|. +..+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l 233 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 233 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHH
Confidence 34566665 999999999999999999988877644221111 0110000 000 001111
Q ss_pred eecccccccccccccccccC-CCCCCCCCCHHHHHHHHHhhhhc--CC--ccccC
Q 015085 361 RVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKELK--PR--TYRIK 410 (413)
Q Consensus 361 ~~~~~l~~~~~liDtpGl~~-~~~~~~~LS~ge~q~v~i~r~l~--~~--~~~l~ 410 (413)
...........++|+.|+.. .++...+|| +|++.++|++. |+ .+.||
T Consensus 234 ~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 234 KRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred HHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 11000011235789999863 345566677 78999999985 66 66665
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=7.9e-06 Score=71.97 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=58.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch----HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFP----RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~----~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+...... ..+.+++... +.. ....|+++|+||+|+... ...+.+.++.
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--------~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~- 160 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--------GLT--LDDVPIVIQVNKRDLPDA-LPVEMVRAVV- 160 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--------TCC--TTSSCEEEEEECTTSTTC-CCHHHHHHHH-
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--------ccc--cCCCCEEEEEEchhcccc-cCHHHHHHHH-
Confidence 45678999999999985321111 2222333211 000 122489999999999654 3444454443
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ...++.+||+++.|++++++.|.+.
T Consensus 161 ---~~~~---~~~~~~~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 161 ---DPEG---KFPVLEAVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp ---CTTC---CSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred ---HhcC---CceEEEEecCCCcCHHHHHHHHHHH
Confidence 2333 2368999999999999999887554
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.91 E-value=1.5e-05 Score=68.22 Aligned_cols=93 Identities=20% Similarity=0.129 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC----CCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS----SLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~----~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+.. + ...+..++..... .. . ...|+++|+||+|+... .........+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~-~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~-- 137 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQ-S-FIKARHWVKELHE-----QA-S---KDIIIALVGNKIDXLQEGGERKVAREEGEKL-- 137 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----HS-C---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHH--
T ss_pred hhhccCcEEEEEEecCChH-H-HHHHHHHHHHHHH-----hc-C---CCCcEEEEEECCCccccccccCCCHHHHHHH--
Confidence 3456789999999998742 1 2233333322110 00 0 12389999999999754 1222233333
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 138 --~~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 138 --AEEKG----LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp --HHHHT----CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred --HHHcC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33334 3688999999999999998886543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.9e-07 Score=87.23 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc-CcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS-VDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~-~~~~~G 335 (413)
++.++|+||||||||||+|+|. ..+.+|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 5678999999999999999987 666655
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.1e-06 Score=75.76 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=35.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|+|......+. ...++|.+.......+ .....++||||+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT--------------AAKSITKKCEKRSSSWKETELVVVDTPGIFD 90 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC--------------CCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence 57889999999999999999755332220 0113443332221112 23568999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.7e-05 Score=69.93 Aligned_cols=110 Identities=20% Similarity=0.134 Sum_probs=58.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... ..+.. ...|+++|+||+|+.... ........| .
T Consensus 84 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 148 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQE-S-FNNVKQWLQEI-----DRYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEF----A 148 (196)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHH----H
T ss_pred HHHhhCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccccccccCHHHHHHH----H
Confidence 3456789999999998732 1 12233333221 00100 123899999999997653 222333333 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHH
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKST 321 (413)
+..+ ..++.+||+++.|++++++.|.+....... -.-+..|++||+
T Consensus 149 ~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~-~~~~~~~~~~s~ 194 (196)
T 3tkl_A 149 DSLG----IPFLETSAKNATNVEQSFMTMAAEIKKRMG-PGATAGGAEKSN 194 (196)
T ss_dssp HHTT----CCEEEECTTTCTTHHHHHHHHHHHHHHHC--------------
T ss_pred HHcC----CcEEEEeCCCCCCHHHHHHHHHHHHHHHhc-cccccCCCccCC
Confidence 3344 368899999999999998888665433211 113445666665
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=69.53 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=57.5
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+... ...+..++.... .... ...|+++|+||+|+............|. +.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 153 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERT--FTNIKQWFKTVN-----EHAN----DEAQLLLVGNKSDMETRVVTADQGEALA----KE 153 (213)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHHHHHHHHH-----HHTT----TCSEEEEEEECTTCSSCCSCHHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHH-----HhcC----CCCCEEEEEECCCCcccccCHHHHHHHH----HH
Confidence 4567899999999987421 122233332210 0000 1138999999999954444444444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 154 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 154 LG----IPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HT----CCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33 2588999999999999988886543
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=9.1e-06 Score=78.27 Aligned_cols=59 Identities=37% Similarity=0.356 Sum_probs=40.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
+.+.++|.+|||||||+|.|++.. ...++..|+||++.+..... -.....++||||+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~---------------~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK---------------VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC---------------CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---------------eeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc
Confidence 467889999999999999999532 11234567788765432111 123567999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=97.86 E-value=8.7e-06 Score=76.55 Aligned_cols=57 Identities=28% Similarity=0.301 Sum_probs=41.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|+|.. ..++.+||+|.+........ .....++||||...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~----------------~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~ 64 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK----------------QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 57789999999999999999532 22456789888765443222 23578999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.5e-06 Score=70.47 Aligned_cols=57 Identities=30% Similarity=0.340 Sum_probs=34.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|.+... ..+..|++|.+........ .....++||||...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV----------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 62 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS----------------SCC-----CCCCCEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe----------------eccCCCCcceeeeEEEEEECCcEEEEEECCCccc
Confidence 577799999999999999996431 1123455554432211111 23568999999864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.4e-06 Score=84.01 Aligned_cols=41 Identities=27% Similarity=0.240 Sum_probs=32.8
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|++ +|.+
T Consensus 113 ~~vL~~v-sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I 154 (305)
T 2v9p_A 113 INALKLW-LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV 154 (305)
T ss_dssp HHHHHHH-HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred hhhhccc-eEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence 3566676 67777777665 9999999999999999998 5754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1e-05 Score=78.11 Aligned_cols=61 Identities=38% Similarity=0.405 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--cccccccccccccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLLH 380 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~~ 380 (413)
..|.+.++|.+|||||||+|.|+|.. ...++..++||++.+...... .....++||||+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~---------------~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK---------------VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC---------------CSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC---------------ccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 34678889999999999999999532 112456678887654432222 33577999999975
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.7e-06 Score=71.20 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=56.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ....+.... ..
T Consensus 70 ~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~nK~Dl~~~~-~~~~~~~~~---~~ 135 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRD-RI-GISKSELVAMLEEE---ELRK-----AILVVFANKQDMEQAM-TSSEMANSL---GL 135 (171)
T ss_dssp GGCTTCSEEEEEEETTCCT-TH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHH---TG
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhch---hhCC-----CEEEEEEECCCCcCCC-CHHHHHHHh---Cc
Confidence 4567899999999998753 22 22233322211000 0012 3899999999997542 222222221 11
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
......-..++.+||+++.|++++++.|.+..
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 10000112688999999999999998886544
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=69.21 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=58.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCC-CCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH-
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGK-SGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR- 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k-~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~- 269 (413)
..+..+|++++|+|+.+.. + ...+.+++....... ...... .....|+++|+||+|+.... ....+...+...
T Consensus 82 ~~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~--~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~ 156 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHL-R-LCVVKSEIQAMLKHE--DIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTT 156 (199)
T ss_dssp GGCTTCSEEEEEEETTCGG-G-HHHHHHHHHHHHTSH--HHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHH
T ss_pred HHHhcCCEEEEEEECCcHH-H-HHHHHHHHHHHHhCh--hhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchh
Confidence 4567899999999998753 2 222333332211100 000000 00023899999999997552 223333332211
Q ss_pred H-HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 A-REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~-~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
. +..+ ..++.+||+++.|++++++.|.+..
T Consensus 157 ~~~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 157 LMGDHP----FVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp HHTTSC----EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hccCCe----eEEEEeeCCCccCHHHHHHHHHHHH
Confidence 1 1121 4688999999999999998886544
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.1e-05 Score=76.24 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=41.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|+|.. ..++.+||+|.+........ .....++||||...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR----------------QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC----------------EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 57789999999999999999542 13456788887764433222 23468999999874
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-05 Score=67.76 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=60.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+.. + ...+..++... ............|+++|+||+|+.......+.+..|.+.
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~- 144 (177)
T 1wms_A 73 RTPFYRGSDCCLLTFSVDDSQ-S-FQNLSNWKKEF-----IYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD- 144 (177)
T ss_dssp HGGGGTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-
T ss_pred HHHHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-
Confidence 345677899999999998743 1 12223332221 001000000123899999999997544444555555431
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.+.+..
T Consensus 145 --~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 145 --NGD----YPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp --TTC----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --cCC----ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 4689999999999999998886544
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.5e-05 Score=66.87 Aligned_cols=94 Identities=20% Similarity=0.266 Sum_probs=58.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC---CCChHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS---SLSPTRFEHWVR 267 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~---~~~~~~l~~~~~ 267 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+... ....+....+.
T Consensus 90 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~- 156 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRT-SF-DNISTKWEPEI-----KHYIDT-----AKTVLVGLKVDLRKDGSDDVTKQEGDDLC- 156 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----SEEEEEEECGGGCCTTTTCCCHHHHHHHH-
T ss_pred hhccCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhccCCCCcccHHHHHHHH-
Confidence 4567899999999998742 21 121 1222111 111112 389999999999753 23334444443
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+ ...++.+||+++.|++++++.|.+...
T Consensus 157 ---~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 157 ---QKLG---CVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp ---HHHT---CSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---HhcC---CCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 3333 234889999999999999988865543
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.2e-05 Score=78.45 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=32.6
Q ss_pred hhccchhhhcccCC-cEEEEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 294 SLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g-~~~~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
.+++.+ ++....| .+.++|+||+|||||+++|+|++++.+|.+
T Consensus 159 ~~l~~l-~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i 202 (330)
T 2pt7_A 159 QAISAI-KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 202 (330)
T ss_dssp HHHHHH-HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred HHHhhh-hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence 355666 4444444 456699999999999999999998887743
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=76.95 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.+..++..+|++++|+|+.+ ....+..+.+.+... + .|+++|+||+|+... ...+.+++..
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~----------~-----~P~ilvlNK~D~~~~---~~~~~~~l~~ 141 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG----------K-----APVILAVNKVDNVQE---KADLLPHLQF 141 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS----------S-----SCEEEEEESTTTCCC---HHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc----------C-----CCEEEEEECcccCcc---HHHHHHHHHH
Confidence 34567788999999999987 333334444433311 2 389999999999741 2345455554
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+.+..+ +..++.+||+++.|+++|++.|......
T Consensus 142 l~~~~~---~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 142 LASQMN---FLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHTTSC---CSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHhcC---cCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 443333 3468999999999999999998766544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=69.84 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=38.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|++.. ...+..|++|.+........ .....++||||...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN----------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCc
Confidence 57789999999999999999532 12234567766543222112 23467899999864
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.4e-05 Score=79.75 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.||||||||||+|+|.
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5666999999999999999963
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=70.43 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+... ...+..++..... ..........|+++|+||+|+.......+....|...
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~-----~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--- 145 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNT--FKTLDSWRDEFLI-----QASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS--- 145 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHH-----HHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---
T ss_pred HHHhCCcEEEEEEECCCHHH--HHHHHHHHHHHHH-----hcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---
Confidence 34567899999999987421 1222233221100 0000000013899999999998544444445544321
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 146 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 146 KNN----IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp TTS----CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCC----ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 122 3689999999999999998886543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.2e-06 Score=84.59 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=27.7
Q ss_pred hccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 295 LIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+++.+ ++....|-+.++|+||+||||||++|.++..
T Consensus 50 ~l~~v-~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQL-ELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEE-EEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeE-EEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 44555 5666777555599999999999999987764
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=80.33 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=57.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++|+|+|+.+.....+..+.+.+. + .|+++|+||+|+... ...+.+..+.
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~------------~-----~piivV~NK~DL~~~-~~~~~~~~~~-- 375 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIK------------N-----KRYLVVINKVDVVEK-INEEEIKNKL-- 375 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHT------------T-----SSEEEEEEECSSCCC-CCHHHHHHHH--
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhc------------C-----CCEEEEEECcccccc-cCHHHHHHHh--
Confidence 3445667799999999998754322222322221 2 289999999999753 2223333321
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ....++.+||+++.|+++|++.|.+.
T Consensus 376 -----~--~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 376 -----G--TDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp -----T--CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred -----c--CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 1 11358999999999999999988654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.6e-06 Score=81.26 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
++++++ +|+||||||||++.|++++.+..|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 345554 999999999999999999998877643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.8e-05 Score=68.50 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=54.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.... ...+.+... ...+ .|+++|+||+|+... ....+..++.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~---~~~~~l~~~-------~~~~-----~p~ilv~nK~Dl~~~--~~~~~~~~~~---- 132 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMP---QTVEAINHA-------KAAN-----VPIIVAINKMDKPEA--NPDRVMQELM---- 132 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCH---HHHHHHHHH-------GGGS-----CCEEEEEETTTSSCS--CHHHHHHHHT----
T ss_pred HHHhhCCEEEEEEECCCCCcH---HHHHHHHHH-------HhCC-----CCEEEEEECccCCcC--CHHHHHHHHH----
Confidence 345678999999998874322 222222211 0012 389999999999753 2233333321
Q ss_pred HcCCC--c---cceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGIS--K---ITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~--~---~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+.. . ...++.+||+++.|++++++.|.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 133 EYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp TTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 11110 1 1368899999999999998887543
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.7e-05 Score=69.97 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=34.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.++.++|.+|+|||||+|.|++... ....+..+|+|.+...+. .+....++||||+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~t~~~~~~~--~~~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRKN--------------LARTSSKPGKTQTLNFYI--INDELHFVDVPGYGF 81 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--ETTTEEEEECCCBCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--------------ccccCCCCCceeeEEEEE--ECCcEEEEECCCCCc
Confidence 4688899999999999999995320 112234567776554432 344678999999753
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=76.19 Aligned_cols=58 Identities=33% Similarity=0.255 Sum_probs=37.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~ 379 (413)
+.+.++|.+|||||||+|+|+|... ..++..++||++.+..... -.....++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~---------------~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKI---------------SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSE---------------EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc---------------cccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4577799999999999999996421 1124456777643221111 12346789999986
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=64.83 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=56.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... ..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 152 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPA-SF-QNVKEEWVPEL-----KEYAPN-----VPFLLIGTQIDLRDDPKTLARLNDMKEKPI 152 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred HhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhcccccchhhcccccCccc
Confidence 4567799999999998742 11 1222 222211 111112 389999999999753 12
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+....|. +..+ ...++.+||+++.|++++++.|.+.
T Consensus 153 ~~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 153 CVEQGQKLA----KEIG---ACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp CHHHHHHHH----HHHT---CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHH----HHcC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 223333333 3333 2368899999999999999887543
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-05 Score=68.75 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=37.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|.|.+.. ...+..||+|.+...+. .. ...++||||+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~----------------~~~~~~~~~t~~~~~~~--~~-~~~l~Dt~G~~ 55 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK----------------VRRGKRPGVTRKIIEIE--WK-NHKIIDMPGFG 55 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC----------------CSSSSSTTCTTSCEEEE--ET-TEEEEECCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhCcC----------------CccCCCCCccceeEEEe--cC-CEEEEECCCcc
Confidence 57889999999999999999532 12234456665544442 22 57899999974
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.6e-05 Score=79.79 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=57.9
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
++....+..+|+|++|+|+.+...... ....+++... .+ .|+++|+||+|+.+.. ....+.+
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------~~-----~piIvV~NK~Dl~~~~--~~~~~~l- 366 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---------PA-----AKFLTVANKLDRAANA--DALIRAI- 366 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------TT-----SEEEEEEECTTSCTTT--HHHHHHH-
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------CC-----CCEEEEEECcCCCCcc--chhHHHH-
Confidence 445667889999999999998654211 1222333221 12 3899999999997652 1111111
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+ .+ ...++.+||+++.|+++|++.|.+...
T Consensus 367 ---~~-~~---~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 367 ---AD-GT---GTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ---HH-HH---TSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ---Hh-cC---CCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 11 146899999999999999999866553
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.1e-05 Score=75.32 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred hhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH---
Q 015085 191 MSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV--- 266 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~--- 266 (413)
...+..+|++++|+|+.+.. .....+...++... +. +|+++|+||+|+... +....+.
T Consensus 93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~----------~~----~~iivviNK~Dl~~~----~~~~~~~~~i 154 (403)
T 3sjy_A 93 LSGAALMDGAILVVAANEPFPQPQTREHFVALGII----------GV----KNLIIVQNKVDVVSK----EEALSQYRQI 154 (403)
T ss_dssp HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------TC----CCEEEEEECGGGSCH----HHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc----------CC----CCEEEEEECccccch----HHHHHHHHHH
Confidence 34556789999999998753 22222222322221 21 389999999999753 2232222
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
++.++..+. ....++.+||+++.|+++|++.|.+..
T Consensus 155 ~~~l~~~~~-~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 155 KQFTKGTWA-ENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhhCC-CCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 222222221 124699999999999999999987644
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.70 E-value=5.5e-05 Score=64.69 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=57.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+... ...+..++.... ... . ...|+++|+||+|+.......+....+. +.
T Consensus 72 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 136 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERT--FTNIKQWFKTVN-----EHA-N---DEAQLLLVGNKSDMETRVVTADQGEALA----KE 136 (170)
T ss_dssp HHTTEEEEEEEEETTCHHH--HHTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCTTCCSCHHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHH-----Hhc-C---CCCcEEEEEECccCCcCccCHHHHHHHH----HH
Confidence 3457899999999987421 122333332210 000 0 1238999999999954444444444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 137 ~~----~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 137 LG----IPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp HT----CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33 3588999999999999998886544
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.7e-05 Score=78.42 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred EeecCcchhccchhhhcccCCcE---EEEcCCCCcHHHHHHHHHccC
Q 015085 287 VKNWGLKSLIDDVVDLAGKRGNV---WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 287 ~~~~Gi~~Ll~~I~~l~~~~g~~---~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+||... ++.+ ++....|.+ .++|+||+|||||||+|+|..
T Consensus 22 ~~~y~~~~-L~~v-sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP-DQLV-NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C-HHHH-HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee-cCCC-ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44555444 6666 677777875 459999999999999999874
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.3e-05 Score=71.74 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=21.1
Q ss_pred ccCCc-EEEEcCCCCcHHHHHHHHHccC
Q 015085 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 304 ~~~g~-~~~vG~ng~GKSTLin~L~g~~ 330 (413)
...+. +.++|++|||||||+|+|+|..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444 5669999999999999999754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-05 Score=70.22 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=59.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-------------CCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------------SSLS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-------------~~~~ 258 (413)
..+..+|++++|+|+.+.. ++...+..|+... .....+ .|+++|+||+|+.. ....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPE-TVDSALKKWRTEI-----LDYCPS-----TRVLLIGCKTDLRTDLSTLMELSHQKQAPIS 162 (214)
T ss_dssp GGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHH-----HHHCTT-----SEEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred HHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhccchhhhhhhcccccCccC
Confidence 4567899999999998742 2222123333221 011112 38999999999975 2233
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecC-cchhccchhhhc
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWG-LKSLIDDVVDLA 303 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~G-i~~Ll~~I~~l~ 303 (413)
.+....|.+ ..+ ...++.+||+++.| ++++++.+.+.+
T Consensus 163 ~~~~~~~~~----~~~---~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 163 YEQGCAIAK----QLG---AEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp HHHHHHHHH----HHT---CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcC---CCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 444445443 333 23688999999998 999998886554
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-05 Score=74.24 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=37.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
.+.++|.+|+|||||+|.|++... ..++..+++|.......... .....++||||+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERV---------------VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 577799999999999999996331 11234455555433322111 22478999999853
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.5e-05 Score=66.06 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=56.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++..... . .+ .|+++|+||+|+.......+.+.+|.+
T Consensus 112 ~~~~~~d~~i~v~D~~~~~-s-~~~~~~~~~~i~~-----~-~~-----~piilv~NK~D~~~~~~~~~~~~~~~~---- 174 (208)
T 3clv_A 112 LYYRGATCAIVVFDISNSN-T-LDRAKTWVNQLKI-----S-SN-----YIIILVANKIDKNKFQVDILEVQKYAQ---- 174 (208)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----H-SC-----CEEEEEEECTTCC-CCSCHHHHHHHHH----
T ss_pred HHhcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHh-----h-CC-----CcEEEEEECCCcccccCCHHHHHHHHH----
Confidence 3456789999999998742 1 2233333332100 0 12 389999999993223344455555543
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 175 ~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 175 DNN----LLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CcEEEEecCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999888543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=71.39 Aligned_cols=60 Identities=28% Similarity=0.268 Sum_probs=40.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc--ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV--LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~--l~~~~~liDtpGl~~ 380 (413)
-.+.++|.+|+|||||+|.|++... ...++..+|+|.+....... -.....++||||+..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQKR--------------LAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCSS--------------SSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc--------------ceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 3688899999999999999986421 11234567777765433211 123577999999754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=4e-05 Score=67.55 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=55.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+.+++....... ...+ .|+++|+||+|+.... ....+.+. ...
T Consensus 86 ~~~~~~d~ii~v~D~~~~~-s-~~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~~-~~~~~~~~---~~~ 151 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQE-K-IEASKNELHNLLDKP---QLQG-----IPVLVLGNKRDLPGAL-DEKELIEK---MNL 151 (188)
T ss_dssp HHHTTCSEEEEEEETTCGG-G-HHHHHHHHHHHHTCG---GGTT-----CCEEEEEECTTSTTCC-CHHHHHHH---TTG
T ss_pred HHHccCCEEEEEEECCCHH-H-HHHHHHHHHHHHhCc---ccCC-----CCEEEEEECCCCccCC-CHHHHHHH---hCh
Confidence 3456789999999998742 2 223333332211000 0012 3899999999997542 22222211 110
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+..
T Consensus 152 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 152 SAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00001123578999999999999999886554
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=97.67 E-value=1.1e-05 Score=68.89 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=56.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... .. ...|+++|+||+|+.... ....+..+. ..
T Consensus 63 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~-----~~~piilv~nK~Dl~~~~-~~~~~~~~~---~~ 128 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAED---EL-----RDAVLLVFANKQDLPNAM-NAAEITDKL---GL 128 (164)
T ss_dssp HHTTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GG-----TTCEEEEEEECTTSTTCC-CHHHHHHHT---TG
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhch---hh-----cCCeEEEEEECcCCcCCC-CHHHHHHHh---Cc
Confidence 4567899999999998752 22 22333332211000 00 123899999999996542 222222221 10
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+..
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 129 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 00000113588999999999999998886544
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=73.25 Aligned_cols=98 Identities=14% Similarity=0.236 Sum_probs=52.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. .....+...++... + .+++++|+||+|+..........+ .+++
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l----------~----~~~iivv~NK~Dl~~~~~~~~~~~-~i~~ 162 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL----------G----IDKIIIVQNKIDLVDEKQAEENYE-QIKE 162 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----------T----CCCEEEEEECTTSSCTTTTTTHHH-HHHH
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc----------C----CCeEEEEEEccCCCCHHHHHHHHH-HHHH
Confidence 345567889999999998753 21111212222111 2 137999999999986532112222 2223
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+++.... ....++.+||+++.|+++|++.|.+..
T Consensus 163 ~l~~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGTIA-ENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTSTT-TTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhcCC-CCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 3332211 124689999999999999999986644
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.4e-05 Score=82.45 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=30.9
Q ss_pred ccccc--CCCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 375 TPGLL--HPNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 375 tpGl~--~~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
..|+. ..++....|||||+||+.+||+|. ++.|.||+|.
T Consensus 791 ~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 791 DVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp HTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred HcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 34553 246788999999999999999995 3589999884
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.5e-05 Score=65.98 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++.... ....+ .|+++|+||+|+.... ........+ .
T Consensus 77 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~----~ 140 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAE-S-FVNVKRWLHEIN-----QNCDD-----VCRILVGNKNDDPERKVVETEDAYKF----A 140 (181)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHCTT-----SEEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhCCC-----CCEEEEEECCCCchhcccCHHHHHHH----H
Confidence 3456789999999998732 1 223333433221 01112 3899999999987542 222333333 2
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...+ ..++.+||+++.|++++++.|.+.
T Consensus 141 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (181)
T 3tw8_B 141 GQMG----IQLFETSAKENVNVEEMFNCITEL 168 (181)
T ss_dssp HHHT----CCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999888554
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00015 Score=62.70 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=58.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++.... .. .. ...|+++|+||+|+... ....+.+..|. +
T Consensus 81 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~--~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~ 145 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQA-S-FERAKKWVQELQ-----AQ--GN--PNMVMALAGNKSDLLDARKVTAEDAQTYA----Q 145 (181)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HH--SC--TTCEEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----Hh--cC--CCCcEEEEEECCcccccccCCHHHHHHHH----H
Confidence 456789999999998642 1 122333333211 00 10 12389999999999754 22334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 146 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 146 ENG----LFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HTT----CEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HcC----CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333 3688999999999999999886554
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.8e-05 Score=73.55 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=33.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccc---ccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA---QAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~---~~~liDtpGl~ 379 (413)
++.++|.+|+|||||+|+|++....... ....+....++++.+.........+ ...++||||+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~~~--------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYSPE--------YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccC--------CCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 5778999999999999999864321111 0000111123344443333222222 46899999984
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=62.90 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=54.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++.... ... . ...|+++|+||+|+... ....+....|.+
T Consensus 76 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--- 141 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEK-S-FDNIRNWIRNIE-----EHA-S---ADVEKMILGNKCDVNDKRQVSKERGEKLAL--- 141 (183)
T ss_dssp TTTTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHS-C---TTCEEEEEEEC--CCSCCCSCHHHHHHHHH---
T ss_pred HHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----Hhc-C---CCCCEEEEEECccCCccCcCCHHHHHHHHH---
Confidence 4566789999999998742 2 223333433211 010 0 12389999999999754 333444555433
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 142 -~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 142 -DYG----IKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp -HHT----CEEEECCC---CCHHHHHHHHHHH
T ss_pred -HcC----CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.5e-05 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=56.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++..... .... .....|+++|+||+|+... ...+.+.+++.. .
T Consensus 86 ~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~~-~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~--~ 154 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRL-R-MVVAKEELDTLLN-----HPDI-KHRRIPILFFANKMDLRDA-VTSVKVSQLLCL--E 154 (190)
T ss_dssp GGGGGCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----STTT-TTSCCCEEEEEECTTSTTC-CCHHHHHHHHTG--G
T ss_pred HHHhcCCEEEEEEECCCHH-H-HHHHHHHHHHHHh-----Chhh-ccCCCeEEEEEeCcCcccC-CCHHHHHHHhCh--h
Confidence 4456789999999998732 1 1222223222100 0000 0012389999999999753 233344443310 1
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... ....++.+||+++.|++++++.|.+..
T Consensus 155 ~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 155 NIKD-KPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp GCCS-SCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hccC-CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1110 113688999999999999998886543
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.7e-05 Score=66.79 Aligned_cols=56 Identities=32% Similarity=0.364 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|..|||||||+|.|++... ...++.+|+|.+..... ......++||||+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~ 79 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRKI---------------AFVSKTPGKTRSINFYL--VNSKYYFVDLPGYG 79 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSCC---------------SCCCSSCCCCCCEEEEE--ETTTEEEEECCCBS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCcc---------------ccccCCCCCccCeEEEE--ECCcEEEEECCCCc
Confidence 3688899999999999999996431 12234566666544332 33457799999964
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=97.64 E-value=6e-05 Score=65.41 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=55.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-----------CCh
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-----------LSP 259 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-----------~~~ 259 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... ...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~v~~ 142 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKA-SY-ENVSKKWIPEL-----KHYAPG-----VPIVLVGTKLDLRDDKQFFIDHPGAVPITT 142 (182)
T ss_dssp GGGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CCEEEEEECHHHHTCHHHHHHC--CCCCCH
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEechhhhcCcccccccccCCCCCH
Confidence 4567789999999998632 11 1222 222211 111112 3899999999997541 112
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.....| .+..+ ...++.+||+++.|++++++.|.+.
T Consensus 143 ~~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 143 VQGEEL----KKLIG---APAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp HHHHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHH----HHHcC---CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 223333 33333 2368899999999999999888554
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.1e-05 Score=72.71 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=37.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|+|||||+|+|++... ..++..+++|.......... .....++||||+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQV---------------VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCC---------------SCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---------------cccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 577899999999999999996331 12234455555443322122 22568999999853
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.63 E-value=2.1e-05 Score=68.65 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=55.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|++++|+|+.+........+...+... . ....|+++|+||+|+...... |.
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~----------~--~~~~p~ilv~NK~Dl~~~~~~------~~--- 135 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR----------L--PAKLPITVVRNKADITGETLG------MS--- 135 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH----------S--CTTCCEEEEEECHHHHCCCCE------EE---
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHh----------c--ccCCCEEEEEECccCCcchhh------hh---
Confidence 44556789999999999886543333232222211 0 011389999999998643110 10
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+. ....++.+||+++.|++++++.|.+..
T Consensus 136 -~~----~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 136 -EV----NGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp -EE----TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred -hc----cCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 00 114688999999999999999886554
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.4e-05 Score=67.33 Aligned_cols=91 Identities=25% Similarity=0.289 Sum_probs=55.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... .
T Consensus 97 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPA-SF-ENVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----CCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEechhhccchhhhhhhhccccccc
Confidence 4567899999999998742 11 1221 222211 111112 3899999999997541 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...... .+.+..+ ...++.+||++|.|++++++.|.+
T Consensus 165 ~~~~~~----~~~~~~~---~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 165 TYPQGL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CHHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cHHHHH----HHHHhcC---CcEEEEeeCCCCCCHHHHHHHHHH
Confidence 111222 2233333 245899999999999999988754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=59.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++.... ... . ...|+++|+||+|+... ....+.+.+|.
T Consensus 97 ~~~~~~d~iilv~D~~~~~-s-~~~~~~~~~~i~-----~~~-~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~---- 161 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRS-S-FLSVPHWIEDVR-----KYA-G---SNIVQLLIGNKSDLSELREVSLAEAQSLA---- 161 (201)
T ss_dssp HHHTTCSEEEEEEETTBHH-H-HHTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHHhhCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----Hhc-C---CCCCEEEEEECCccccccccCHHHHHHHH----
Confidence 4567799999999998642 1 122333332210 010 0 12389999999999753 33344454443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ...++.+||+++.|++++++.|.+..
T Consensus 162 ~~~~---~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 162 EHYD---ILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp HHTT---CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 23689999999999999998886543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=77.79 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
..+.++|.+|||||||||+|++.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46888999999999999999964
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.1e-05 Score=85.50 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.9
Q ss_pred ccccccC--CCCCCCCCCHHHHHHHHHhhhhcC-----CccccCCCC
Q 015085 374 DTPGLLH--PNQITTRLTREEQKLVNINKELKP-----RTYRIKVSL 413 (413)
Q Consensus 374 DtpGl~~--~~~~~~~LS~ge~q~v~i~r~l~~-----~~~~l~~~~ 413 (413)
+..|+.. .++.+..|||||+||+.+|++|.. +.|.||+|.
T Consensus 715 ~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 715 REVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred HHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 3345543 367889999999999999999965 789999884
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=8.9e-05 Score=65.06 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=58.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.......+.+.++.+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---- 153 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSK-S-FADINLYREQI-----KRVKDS---DDVPMVLVGNKCDLPTRTVDTKQAHELAK---- 153 (190)
T ss_dssp --CTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHHH----
T ss_pred HhhCcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHHhCC---CCCeEEEEEECCcCCcccCCHHHHHHHHH----
Confidence 4567799999999998743 1 22233333221 111110 11389999999999865444455555443
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 154 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 154 SYG----IPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp HHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333 2589999999999999998885543
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=64.27 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=55.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CCC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~~ 258 (413)
.+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... ...
T Consensus 88 ~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPS-SF-QNVSEKWVPEI-----RCHCPK-----APIILVGTQSDLREDVKVLIELDKCKEKPVP 155 (201)
T ss_dssp GGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----SCEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred hcCCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEECHhhhhchhhhhhhcccccccCC
Confidence 466789999999998742 11 2222 222211 111112 389999999999752 122
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+....|. +..+ ...++.+||+++.|++++++.|.+.
T Consensus 156 ~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 156 EEAAKLLA----EEIK---AASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp HHHHHHHH----HHHT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHH----HhcC---CcEEEEEecCCCCCHHHHHHHHHHH
Confidence 23333332 2333 2368899999999999999887543
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.6e-05 Score=69.92 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=57.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ..+.+.+++... .
T Consensus 80 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~~-~~~~i~~~~~~~--~ 146 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRE-RI-SVTREELYKMLAHE---DLRK-----AGLLIFANKQDVKECM-TVAEISQFLKLT--S 146 (187)
T ss_dssp HHTTCCEEEEEEETTCTT-TH-HHHHHHHHHHHTSG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHHTGG--G
T ss_pred HhcCCCEEEEEEeCCCHH-HH-HHHHHHHHHHHhch---hhCC-----CeEEEEEECCCCcCCC-CHHHHHHHhChh--h
Confidence 456789999999998853 22 23333332211000 0012 3899999999997532 233333332110 0
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
... .-..++.+||+++.|++++++.|.+..
T Consensus 147 ~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 147 IKD-HQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp CCS-SCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcC-CCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 110 113688999999999999999886554
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00014 Score=62.08 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=57.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++..... . .. ...|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~--~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEE-S-FARAKNWVKELQR-----Q--AS--PNIVIALSGNKADLANKRAVDFQEAQSYA---- 138 (170)
T ss_dssp HHHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----H--SC--TTCEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----h--cC--CCCcEEEEEECccCccccccCHHHHHHHH----
Confidence 3456789999999998742 1 2233333332110 0 00 12389999999999753 22333444433
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 139 ~~~~----~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 139 DDNS----LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHTT----CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3688899999999999999886544
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00022 Score=63.18 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-C-CCChHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-S-SLSPTRFEHWV 266 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-~-~~~~~~l~~~~ 266 (413)
.....+..+|++++|+|+.+.. + ...+..++... ....... ....|+++|+||+|+.. . ....+....|.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~~-~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSME-S-FESCKAWFELL-----KSARPDR-ERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHCSCT-TSCCEEEEEEECC-------CCCHHHHHHHH
T ss_pred HHHHHHhhCcEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhccc-ccCCcEEEEEECcccchhhccCCHHHHHHHH
Confidence 3456678899999999998743 1 22333333321 1111000 01238999999999976 3 33334454443
Q ss_pred HHHHHHcCCCccceEEEeEEEe-ecCcchhccchhhh
Q 015085 267 RQRAREDGISKITKLHFVSAVK-NWGLKSLIDDVVDL 302 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~-~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||++ +.|++++++.|.+.
T Consensus 161 ----~~~~----~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 161 ----TTNT----LDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp ----HHTT----CEEEECCC-------CHHHHHHHHH
T ss_pred ----HHcC----CEEEEeccCCCCcCHHHHHHHHHHH
Confidence 3343 3688999999 99999999888554
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.2e-05 Score=67.42 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=56.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+.+++.... .+... ...|+++|+||+|+... ....+....+. +.
T Consensus 87 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~---~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~ 152 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKA-S-FEHVDRFHQLIL-----RVKDR---ESFPMILVANKVDLMHLRKVTRDQGKEMA----TK 152 (183)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHTS---SCCCEEEEEECTTCSTTCCSCHHHHHHHH----HH
T ss_pred HhcCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcCC---CCCcEEEEEECCCchhccCcCHHHHHHHH----HH
Confidence 33579999999998742 1 122233322110 00001 12389999999999753 33344444443 33
Q ss_pred cCCCccceEEEeEEE-eecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAV-KNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+ ++.|++++++.|.+.
T Consensus 153 ~~----~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 153 YN----IPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HT----CCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred hC----CeEEEeccCCCCCCHHHHHHHHHHH
Confidence 33 358899999 999999999888554
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=3.5e-05 Score=67.46 Aligned_cols=95 Identities=11% Similarity=0.127 Sum_probs=55.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+... .....+.+++.. .
T Consensus 84 ~~~~~~d~ii~v~D~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~~-~~~~~i~~~~~~--~ 150 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRE-RI-SVTREELYKMLAHE---DLRK-----AGLLIFANKQDVKEC-MTVAEISQFLKL--T 150 (181)
T ss_dssp GGGTTCCEEEEEEETTCTT-TH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTC-CCHHHHHHHTTG--G
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhCh---hhCC-----CeEEEEEECCCcccC-CCHHHHHHHhCc--c
Confidence 4567789999999998753 32 23333332211000 0012 389999999999753 223333333210 0
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
... ..-..++.+||+++.|++++++.|.
T Consensus 151 ~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 151 SIK-DHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp GCC-SSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccc-CCceEEEEccCCCCcCHHHHHHHHH
Confidence 000 0112688999999999999998774
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=64.03 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=56.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... .
T Consensus 72 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 139 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPA-SF-ENVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139 (186)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----SCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HhccCCcEEEEEEECCChh-hH-HHHHHHHHHHH-----HHhCCC-----CCEEEEeEcccccccchhhhhhcccccccC
Confidence 3567899999999998732 11 1221 122211 011112 3899999999997531 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+...
T Consensus 140 ~~~~~~~----~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 140 TYPQGLA----MAKEIG---AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CHHHHHH----HHHhcC---CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 1122222 233333 236899999999999999988866543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.60 E-value=2.3e-05 Score=77.29 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.+|||||||||+|++.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5778999999999999999963
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=63.43 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... .... . ...|+++|+||+|+... ....+.+.+|.
T Consensus 83 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 147 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRS-T-YNHLSSWLTDA-----RNLT-N---PNTVIILIGNKADLEAQRDVTYEEAKQFA---- 147 (179)
T ss_dssp HHHHTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS-C---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEeCcCHH-H-HHHHHHHHHHH-----HHhc-C---CCCcEEEEEECcccccccccCHHHHHHHH----
Confidence 3456789999999998742 1 12233333221 0011 0 12389999999999743 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 148 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 148 EENG----LLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp HHTT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999887554
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=72.91 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=55.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC-------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH--
Q 015085 190 LMSASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT-- 260 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~-------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~-- 260 (413)
....+..+|++++|||+.+..+ ....+...++.. .+. +++++|+||+|+........
T Consensus 112 ~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------~~v----~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 112 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------AGV----KHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred HHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----------cCC----CeEEEEeecCCCcccchHHHHH
Confidence 3445667999999999987643 112222222221 132 24999999999964321122
Q ss_pred -HHHHHHHHHHHHcCCCc--cceEEEeEEEeecCcchhcc
Q 015085 261 -RFEHWVRQRAREDGISK--ITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 261 -~l~~~~~~~~~~~g~~~--~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
.+.+.+..+++..|... ...++.+||++|.|+.++.+
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22233333444454321 23689999999999988654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=62.87 Aligned_cols=92 Identities=25% Similarity=0.223 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|.+++|+|+.+.. + ...+..++.... .. ...+ .|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-~~---~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~---- 138 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDED-S-FQKVKNWVKELR-KM---LGNE-----ICLCIVGNKIDLEKERHVSIQEAESYA---- 138 (170)
T ss_dssp CSSTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-HH---HGGG-----SEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEECcCHH-H-HHHHHHHHHHHH-Hh---cCCC-----CeEEEEEECcccccccccCHHHHHHHH----
Confidence 4567889999999998742 1 223333333210 00 1112 389999999999753 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 139 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1z08_A 139 ESVG----AKHYHTSAKQNKGIEELFLDLCKR 166 (170)
T ss_dssp HHTT----CEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999888554
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=8e-05 Score=63.08 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.+.........++. +..
T Consensus 72 ~~~~~~~i~v~d~~~~~-~-~~~~~~~~~~i-----~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~ 137 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTK-S-FEDIHQYREQI-----KRVKDS---DDVPMVLVGNKSDLAARTVESRQAQDLA----RSY 137 (166)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEEchhhhhcccCHHHHHHHH----HHc
Confidence 34579999999988642 1 12233333221 111110 1238999999999987544444444443 333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~----~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 138 G----IPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp T----CCEEEECTTTCTTHHHHHHHHHHH
T ss_pred C----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3 358999999999999999888544
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00012 Score=65.90 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+... ...+..++... .........|+++|+||+|+... .........|.
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i--------~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-- 168 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQL--------QANAYCENPDIVLIGNKADLPDQREVNERQARELA-- 168 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTC--------CCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred HHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHH--------HHhcCcCCCCEEEEEECCccccccccCHHHHHHHH--
Confidence 3455678999999999987321 22333343321 00000012489999999999753 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 169 --~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 169 --DKYG----IPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp --HHTT----CCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred --HHCC----CcEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 358899999999999998887543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=64.18 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=55.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+.... .
T Consensus 92 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 159 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPD-SL-ENIPEKWTPEV-----KHFCPN-----VPIILVGNKKDLRQDEHTRRELAKMKQEPV 159 (201)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECGGGTTCHHHHHHHHTTTCCCC
T ss_pred HhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEecHHhhcCccchhhhcccccCcC
Confidence 3567899999999998632 11 112 1222111 111112 3899999999997641 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+.
T Consensus 160 ~~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 160 RSEEGRD----MANRIS---AFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHH----HHHhCC---CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 1112222 233333 2368899999999999999887543
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0001 Score=63.82 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=58.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+... ...+.+++... ..... ...|+++|+||+|+.... ...+....|.
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 143 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKAS--FDNIQAWLTEI-----HEYAQ----HDVALMLLGNKVDSAHERVVKREDGEKLA--- 143 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHSC----TTCEEEEEEECCSTTSCCCSCHHHHHHHH---
T ss_pred HHHccCCCEEEEEEECCCHHH--HHHHHHHHHHH-----HHhCC----CCCcEEEEEECcccCcccccCHHHHHHHH---
Confidence 345667899999999987421 12233333221 00110 123899999999998642 2333444443
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 144 -~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 144 -KEYG----LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp -HHHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3588999999999999998886544
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=7.2e-05 Score=63.81 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=57.0
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... ....+ .|+++|+||+|+... ....+.+..+. +
T Consensus 74 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~----~ 137 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRE-S-FEAISSWREKVV-----AEVGD-----IPTALVQNKIDLLDDSCIKNEEAEGLA----K 137 (168)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHCS-----CCEEEEEECGGGGGGCSSCHHHHHHHH----H
T ss_pred HhcCCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----HhCCC-----CCEEEEEECcccCcccccCHHHHHHHH----H
Confidence 345789999999998732 1 122333332211 11112 389999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~~~----~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 138 RLK----LRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp HHT----CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred HcC----CeEEEEecCCCCCHHHHHHHHHHH
Confidence 333 368999999999999999887543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.3e-05 Score=70.49 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=55.9
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. ++ ..+.+++..... .......|+++|+||+|+.... ....+.+... ..
T Consensus 86 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~--------~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~---~~ 151 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRD-RM-GVAKHELYALLD--------EDELRKSLLLIFANKQDLPDAA-SEAEIAEQLG---VS 151 (189)
T ss_dssp SSTTCCEEEEEEETTCCT-TH-HHHHHHHHHHHT--------CSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTT---GG
T ss_pred HhhcCCEEEEEEeCCCHH-HH-HHHHHHHHHHHh--------hhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhC---hh
Confidence 456789999999998753 22 222333222100 0000124899999999997542 2222222211 00
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........++.+||+++.|++++++.|.+..
T Consensus 152 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 152 SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 0000112688999999999999998886544
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2.8e-05 Score=69.05 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=55.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|++++|+|+.+.. + ...+.+++....... .. ...|+++|+||+|+.... ....+.... ...
T Consensus 93 ~~~~~d~iilv~D~~~~~-s-~~~~~~~l~~~~~~~---~~-----~~~piilv~NK~Dl~~~~-~~~~i~~~~---~~~ 158 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRE-R-VQESADELQKMLQED---EL-----RDAVLLVFANKQDMPNAM-PVSELTDKL---GLQ 158 (192)
T ss_dssp HHHTCCEEEEEEETTCGG-G-HHHHHHHHHHHHTCG---GG-----TTCEEEEEEECTTSTTCC-CHHHHHHHT---TGG
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHhccc---cc-----CCCeEEEEEECCCCCCCC-CHHHHHHHh---Ccc
Confidence 345789999999998753 2 223333332211000 00 124899999999996542 222222211 110
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........++.+||+++.|++++++.|.+..
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0000113588999999999999998886543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=5.8e-05 Score=77.41 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=60.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.....+..+|++++|+|+.+.......+...++.. .+. |+++|+||+|+.+.. ..+.+.+.++.
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~~i-----p~IvviNK~Dl~~~~-~~~~~~~~l~~ 152 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH----------FNI-----PIIVVITKSDNAGTE-EIKRTEMIMKS 152 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CBCEEEECTTSSCHH-HHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH----------cCC-----CEEEEEECCCcccch-hHHHHHHHHHH
Confidence 34456778999999999987543322222222221 133 779999999997521 11222233333
Q ss_pred HHHHc-CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RARED-GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~-g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+++.. ++ ....++.+||++|.|+++|++.|.+.
T Consensus 153 ~l~~~~~~-~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 153 ILQSTHNL-KNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp HHHHSSSG-GGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHhhhccc-ccceEEEEECcCCCCHHHHHHHHHHh
Confidence 44433 32 12468999999999999998888653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=65.62 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=53.5
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+... ...+.+++..... ....+ .|+++|+||+|+... .........+ .+.
T Consensus 82 ~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 146 (218)
T 4djt_A 82 YIGASGAILFFDVTSRIT--CQNLARWVKEFQA----VVGNE-----APIVVCANKIDIKNRQKISKKLVMEV----LKG 146 (218)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTHHHHHHHHHH----HHCSS-----SCEEEEEECTTCC----CCHHHHHHH----TTT
T ss_pred hhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHH----hcCCC-----CCEEEEEECCCCccccccCHHHHHHH----HHH
Confidence 456899999999987421 1223333322100 01112 389999999999754 2222222222 222
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 147 ~~----~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 147 KN----YEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp CC----CEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred cC----CcEEEEecCCCCCHHHHHHHHHHH
Confidence 22 468999999999999999887543
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00013 Score=64.30 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=57.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~ 269 (413)
...+..+|++++|+|+.+.. + ...+..++... .... ....|+++|+||+|+... .......+.+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~---- 154 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEE-S-FNAVQDWATQI-----KTYS----WDNAQVILVGNKCDMEEERVVPTEKGQLL---- 154 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHH----
T ss_pred HHHHccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhc----CCCCCEEEEEECCCCccccccCHHHHHHH----
Confidence 34567899999999998632 1 12233333221 0111 012489999999999654 2233334333
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 ~~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 155 AEQLG----FDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp HHHHT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHcC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 33334 368899999999999999887554
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00013 Score=64.10 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=58.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++... .... ....|+++|+||+|+... ....+..+.|.
T Consensus 90 ~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~i-----~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 154 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQE-S-FAAVQDWATQI-----KTYS----WDNAQVILVGNKCDLEDERVVPAEDGRRLA---- 154 (189)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhc----CCCCCEEEEEECcccccccCCCHHHHHHHH----
Confidence 4566789999999998642 1 12233333221 0110 012389999999999753 22333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 155 ~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 155 DDLG----FEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp HHHT----CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC----CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3334 3689999999999999998885543
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00022 Score=63.24 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=59.0
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+..++... ..+.. ...|+++|+||+|+... ....+....|.
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 140 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEE-S-FNAVQDWSTQI-----KTYSW----DNAQVLLVGNKCDMEDERVVSSERGRQLA-- 140 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHSC----SSCEEEEEEECTTCTTSCCSCHHHHHHHH--
T ss_pred HHHhhcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccCcccccCHHHHHHHH--
Confidence 345567899999999998742 1 22333333221 11110 12389999999999754 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 141 --~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 141 --DHLG----FEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp --HHHT----CEEEECBTTTTBSSHHHHHHHHHH
T ss_pred --HHCC----CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3334 368899999999999998887543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.55 E-value=3.2e-05 Score=69.88 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.0
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCc
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~ 331 (413)
..+|++++ +|+||||||||+|+|+|+++
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35677666 99999999999999999874
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=63.41 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=57.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+... ...+..++... ...... ..+. +++++|+||+|+... ....+....|. +
T Consensus 76 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i-~~~~~~-~~~~----~~iilv~nK~Dl~~~~~~~~~~~~~~~----~ 143 (178)
T 2hxs_A 76 YIYGAQGVLLVYDITNYQS--FENLEDWYTVV-KKVSEE-SETQ----PLVALVGNKIDLEHMRTIKPEKHLRFC----Q 143 (178)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHHHHHHHH-HHHHHH-HTCC----CEEEEEEECGGGGGGCSSCHHHHHHHH----H
T ss_pred HHhhCCEEEEEEECCCHHH--HHHHHHHHHHH-HHHhcc-cCCC----CeEEEEEEccccccccccCHHHHHHHH----H
Confidence 4567899999999987431 12223333221 000000 0122 248999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 144 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 144 ENG----FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp HHT----CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HcC----CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 333 3688999999999999998886544
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.3e-05 Score=67.61 Aligned_cols=101 Identities=19% Similarity=0.123 Sum_probs=58.9
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
...+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.... ..+.+.+++..
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~nK~Dl~~~~-~~~~~~~~~~~-- 146 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQ-RM-QDCQRELQSLLVEE---RLAG-----ATLLIFANKQDLPGAL-SCNAIQEALEL-- 146 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----CEEEEEEECTTSTTCC-CHHHHHHHTTG--
T ss_pred HHHhcCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhCh---hcCC-----CcEEEEEeCccCCCCC-CHHHHHHHhCh--
Confidence 45577899999999998753 22 23333332211000 0012 3899999999997542 22233222110
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.... .....++.+||+++.|++++++.|.+...+
T Consensus 147 ~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 147 DSIR-SHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GGCC-SSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hhcc-CCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 0000 011368899999999999999988665543
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.54 E-value=5.6e-05 Score=66.71 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=57.8
Q ss_pred cCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+...- ....+...+.... ....+ .|+++|+||+|+............+. +.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 142 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK-----GSVED-----IPVMLVGNKCDETQREVDTREAQAVA----QE 142 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH-----SCGGG-----SCEEEEEECTTCSSCSSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh-----cCCCC-----CCEEEEEECccCCccccCHHHHHHHH----HH
Confidence 3457999999999863210 0111222222110 00012 38999999999986544444444443 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.+ ..++.+||+++.|++++++.|.+....
T Consensus 143 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 143 WK----CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred hC----CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 33 368899999999999999998766544
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=9.8e-05 Score=65.24 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=59.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... ....+.+.+|. +
T Consensus 92 ~~~~~d~iilV~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piiiv~NK~Dl~~~~~v~~~~~~~~~----~ 156 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQD-S-FYTLKKWVKEL-----KEHGP----ENIVMAIAGNKCDLSDIREVPLKDAKEYA----E 156 (192)
T ss_dssp HHTTCSEEEEEEETTCTH-H-HHHHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred hhccCCEEEEEEeCCCHH-H-HHHHHHHHHHH-----HHhCC----CCCcEEEEEECcccccccccCHHHHHHHH----H
Confidence 456789999999998742 1 22333333321 01100 12489999999999753 33334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|++++++.|.+...
T Consensus 157 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 157 SIG----AIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp TTT----CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred HcC----CEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 333 36889999999999999998866543
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=7.2e-05 Score=63.60 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=56.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+....+.+ .
T Consensus 73 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 138 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----Q 138 (168)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHCC---TTSCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEECccccccCccCHHHHHHHHH----H
Confidence 44589999999998742 1 12233332221 111110 12389999999999753 233344444432 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.+.+.
T Consensus 139 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 139 WN----VNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp HT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999887544
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.5e-05 Score=64.98 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=57.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC--CCChHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS--SLSPTRFEHWVRQ 268 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~--~~~~~~l~~~~~~ 268 (413)
...+..+|.+++|+|+.+.. + ...+..++.... ...........|+++|+||+|+... .........|..
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~- 147 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNAS-S-FENIKSWRDEFL-----VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK- 147 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-
T ss_pred HHHhhcCCEEEEEEECCChH-H-HHHHHHHHHHHH-----HHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-
Confidence 34567899999999998742 1 122333332210 0000000012389999999999643 123344444432
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ...++.+||+++.|++++++.|.+.
T Consensus 148 ---~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 148 ---SLG---DIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp ---HTT---SCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ---hcC---CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 121 1468899999999999999888543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00014 Score=65.64 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------CC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~~ 258 (413)
.+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+.... ..
T Consensus 102 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 169 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPN-SF-DNIFNRWYPEV-----NHFCKK-----VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169 (214)
T ss_dssp ---CEEEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCSS-----CCEEEEEECGGGGSCHHHHHHHHHTTCCCCC
T ss_pred HhccCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEChhhhccchhhhhhcccccCccc
Confidence 456789999999998742 11 1222 222211 111112 3899999999997541 11
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+.... +.+..+ ...++.+||+++.|++++++.|.+..
T Consensus 170 ~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 170 YHRGQE----MARSVG---AVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHHHH----HHHHTT---CSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHH----HHHhcC---CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 122222 233333 23689999999999999998886543
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=62.48 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++..... ....+ .|+++|+||+|+... .........+. +.
T Consensus 84 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~~----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 148 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTN-S-FHQTSKWIDDVRT----ERGSD-----VIIMLVGNKTDLSDKRQVSTEEGERKA----KE 148 (179)
T ss_dssp HHTCSEEEEEEETTCHH-H-HHTHHHHHHHHHH----HHTTS-----SEEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hcCCCEEEEEEECCCHH-H-HHHHHHHHHHHHH----hcCCC-----CcEEEEEECCcccccCcCCHHHHHHHH----HH
Confidence 45689999999998632 1 1223333322100 00012 389999999999753 22333333333 23
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.|.+..
T Consensus 149 ~~----~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 149 LN----VMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp HT----CEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred cC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33 3688999999999999998886544
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0002 Score=64.14 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=55.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... .....+ .|+++|+||+|+.... .
T Consensus 92 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 159 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPD-SL-ENIPEKWVPEV-----KHFCPN-----VPIILVANKKDLRSDEHVRTELARMKQEPV 159 (207)
T ss_dssp GGCTTCCEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHSTT-----CCEEEEEECGGGGGCHHHHHHHHHTTCCCC
T ss_pred hhcCCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEEchhhhccccchhhhhhcccCCC
Confidence 3567799999999998632 11 122 1222111 111112 3899999999997541 1
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+.... +.+..+ ...++.+||+++.|++++++.|.+..
T Consensus 160 ~~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 160 RTDDGRA----MAVRIQ---AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CHHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHH----HHHhcC---CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1111122 222222 23688999999999999998886543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=9.3e-05 Score=63.95 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHcc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
...+.++|.+|||||||+|.|.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346888999999999999999863
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=2.9e-05 Score=78.13 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|+||||||||||+|++..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 56779999999999999999764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=63.75 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=56.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... .... ...|+++|+||+|+... ....+....|. +
T Consensus 90 ~~~~~d~ii~v~d~~~~~-s-~~~~~~~l~~i~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 154 (191)
T 2a5j_A 90 YYRGAAGALLVYDITRRE-T-FNHLTSWLEDAR-----QHSS----SNMVIMLIGNKSDLESRRDVKREEGEAFA----R 154 (191)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHSC----TTCEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcC----CCCCEEEEEECcccCCccccCHHHHHHHH----H
Confidence 345789999999998732 1 222333332210 0000 12389999999999753 23334444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 155 EHG----LIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=97.50 E-value=6.8e-05 Score=69.92 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC-CeeeeEeeccc-ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG-TTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg-tT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
..+.++|.+|||||||+|.|++..... .+..++ +|.+....... ......++||||+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQAFE---------------SKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFS 83 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSCCSC---------------CCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc---------------cCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCC
Confidence 368889999999999999999643111 111122 44433221111 123578999999864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00021 Score=62.30 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=59.1
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+... ...+..++... ..... ....|+++|+||+|+... ....+.+..+.
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i-----~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 154 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQS--FLNVRNWISQL-----QMHAY---SENPDIVLCGNKSDLEDQRAVKEEEARELA-- 154 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHSS---SSSCCEEEEEECTTCGGGCCSCHHHHHHHH--
T ss_pred HHHHHcCCCEEEEEEECCCHHH--HHHHHHHHHHH-----HHhcC---CCCCCEEEEEECcccccccccCHHHHHHHH--
Confidence 4456778999999999987421 12223333221 00110 011389999999999753 23334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.|.+.
T Consensus 155 --~~~~----~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 155 --EKYG----IPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp --HHHT----CCEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHcC----CCEEEEECCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999999887544
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00013 Score=74.78 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=55.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC--C--chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDG--S--FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEH 264 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~--s--~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~ 264 (413)
....+..+|++|+|+|+.+... . ......+.+... ...+ .+++|+|+||+|+.... ...+.+..
T Consensus 128 ~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-------~~~~----~~~iIvviNK~Dl~~~~~~~~~~i~~ 196 (483)
T 3p26_A 128 AIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSLG----IHNLIIAMNKMDNVDWSQQRFEEIKS 196 (483)
T ss_dssp HHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-------HHTT----CCCEEEEEECGGGGTTCHHHHHHHHH
T ss_pred HHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-------HHcC----CCcEEEEEECcCcccchHHHHHHHHH
Confidence 3455677999999999987421 1 112222222111 0012 23799999999997531 11223444
Q ss_pred HHHHHHHHcCCCc-cceEEEeEEEeecCcchhc
Q 015085 265 WVRQRAREDGISK-ITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 265 ~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll 296 (413)
++..+++..|... ...++.+||++|.|+.++.
T Consensus 197 ~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 197 KLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp HHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred HHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 5555555555421 2468999999999998653
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=63.12 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=57.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++..... .......|+++|+||+|+.... ....+.+++.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~--------~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~---- 145 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKD-RM-STASKELHLMLQ--------EEELQDAALLVFANKQDQPGAL-SASEVSKELN---- 145 (183)
T ss_dssp GTTTTEEEEEEEEETTCTT-TH-HHHHHHHHHHTT--------SSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTT----
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHc--------ChhhCCCeEEEEEECCCCCCCC-CHHHHHHHhC----
Confidence 4566789999999998753 22 233333322100 0000124899999999997542 2233333221
Q ss_pred HcCC-CccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGI-SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~-~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.... .....++.+||+++.|++++++.|.+..
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 1111 0113688999999999999998885543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=64.33 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=56.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++...... . + ....|+++|+||+|+.... ..+.+.+.+. .
T Consensus 79 ~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~~~----~--~--~~~~piilv~NK~Dl~~~~-~~~~~~~~~~---~ 144 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRK-RF-EETGQELTELLEE----E--K--LSCVPVLIFANKQDLLTAA-PASEIAEGLN---L 144 (181)
T ss_dssp HHHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHTTC----G--G--GTTCCEEEEEECTTSTTCC-CHHHHHHHTT---G
T ss_pred HHhCCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhC----h--h--hcCCCEEEEEECcCcccCC-CHHHHHHHhC---c
Confidence 4567799999999998743 22 2222222211000 0 0 0123899999999997542 2222222210 0
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..-......++.+||++|.|++++++.|.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 00000113588899999999999999886544
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00021 Score=62.23 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=56.9
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.......+....+. +..+
T Consensus 74 ~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTK-S-FEDIHHYREQI-----KRVKDS---EDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYG 139 (189)
T ss_dssp HHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHTTC---SCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHT
T ss_pred hcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCcEEEEEECccCcccccCHHHHHHHH----HHcC
Confidence 3479999999998742 1 12233332211 011111 1248999999999986544444554443 3333
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|++++++.|.+..
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 140 ----IPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp ----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3588999999999999998885543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00029 Score=62.72 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=58.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... ....+....|.
T Consensus 76 ~~~~~~d~vilv~d~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 140 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQE-S-FNGVKMWLQEI-----DRYAT----STVLKLLVGNKCDLKDKRVVEYDVAKEFA---- 140 (206)
T ss_dssp GGGTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECCCCccccccCHHHHHHHH----
Confidence 4466789999999998742 1 22333333221 01110 12389999999999764 23333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 141 ~~~~----~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 141 DANK----MPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp HHTT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcC----CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3333 3588999999999999998885543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=3.8e-05 Score=68.27 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC---hHHHHHH-HHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS---PTRFEHW-VRQR 269 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~---~~~l~~~-~~~~ 269 (413)
+..+|++++|+|+.+........+.+++.... ....+ .|+++|+||+||++.... ...+... ...+
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~-----~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~ 162 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAY-----KVNPD-----MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL 162 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHH-----HHCTT-----CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHH-----hcCCC-----CcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence 44689999999999841112233444443220 01112 399999999999753110 0111111 1222
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+.........++.+||++ .|++++++.+.+
T Consensus 163 ~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 163 ADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp HHTTCTTSCEEEEEECTTS-THHHHHHHHHHH
T ss_pred HHhhhhcCCcceEEEEech-hhHHHHHHHHHH
Confidence 2211000113678899999 999999887754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.48 E-value=3.8e-05 Score=70.15 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.2
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
++...+|++++ +|+||||||||+++|+|++
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45556666555 9999999999999999988
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=62.05 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=57.0
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++... ... +. ...|+++|+||+|+... ....+....| .+
T Consensus 75 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~l-----~~~--~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~----~~ 139 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEE-T-FSTLKNWVREL-----RQH--GP--PSIVVAIAGNKCDLTDVREVMERDAKDY----AD 139 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHH--SC--TTSEEEEEEECTTCGGGCCSCHHHHHHH----HH
T ss_pred hCcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHh--CC--CCCcEEEEEECCccccccccCHHHHHHH----HH
Confidence 456789999999998742 1 12223333221 001 11 12389999999999753 2233333333 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||+++.|++++++.|.+..
T Consensus 140 ~~~----~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 140 SIH----AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HTT----CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HcC----CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 333 3688999999999999998886543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00022 Score=62.34 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=56.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... ..+..+ .|+++|+||+|+... ..
T Consensus 74 ~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 141 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPE-TL-DSVLKKWKGEI-----QEFCPN-----TKMLLVGCKSDLRTDVSTLVELSNHRQTPV 141 (184)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred hhcCCCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHHCCC-----CCEEEEEEcchhhcchhhHhhhhhcccCCC
Confidence 3567899999999998742 21 122 2222211 111112 389999999999742 22
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEE-eecCcchhccchhhhc
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVDLA 303 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l~ 303 (413)
..+....|.+ ..+ ...++.+||+ .+.|++++++.+.+..
T Consensus 142 ~~~~~~~~~~----~~~---~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 142 SYDQGANMAK----QIG---AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CHHHHHHHHH----HHT---CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HcC---CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 3333444432 233 1368899998 7899999998875543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=64.43 Aligned_cols=95 Identities=20% Similarity=0.154 Sum_probs=59.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+.+++... ..... ...|+++|+||+|+... ....+....|.
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 158 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEE-S-FRCLPEWLREI-----EQYAS----NKVITVLVGNKIDLAERREVSQQRAEEFS-- 158 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCSSCHHHHHHHH--
T ss_pred HHHHHhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcC----CCCCEEEEEECCCCccccccCHHHHHHHH--
Confidence 446678899999999998742 1 12233333221 01111 12389999999999743 33334444443
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||+++.|++++++.|.+..
T Consensus 159 --~~~~----~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 159 --EAQD----MYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp --HHHT----CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --HHcC----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2233 3588999999999999998875443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.3e-05 Score=74.81 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=30.7
Q ss_pred EEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 286 AVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 286 a~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
....|+...+++.+ ++ .+.++|+||||||||||+|+|...+..|
T Consensus 17 l~~~y~~~~vl~~v-sf-----~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 17 LPNQVYRKSVKRGF-EF-----TLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp CCCCTTTTTCC-CC-CE-----EEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred cceeECCEEEecCC-CE-----EEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 34455555555554 22 4677999999999999999998764443
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00012 Score=65.59 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=56.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCC---------ChHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL---------SPTR 261 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~---------~~~~ 261 (413)
..+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+..... ....
T Consensus 76 ~~~~~~d~~ilv~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~v~~~~ 143 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKA-SY-ENVLKKWMPEL-----RRFAPN-----VPIVLVGTKLDLRDDKGYLADHTNVITSTQ 143 (212)
T ss_dssp GGGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CCEEEEEECHHHHTCHHHHHTCSSCCCHHH
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHhCCC-----CCEEEEEeCHHhhhCccccccccCCCCHHH
Confidence 4567799999999998742 11 1222 222211 111112 38999999999975310 2223
Q ss_pred HHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...| .+..+ ...++.+||+++.|++++++.|.+..
T Consensus 144 ~~~~----~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 144 GEEL----RKQIG---AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp HHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHH----HHHcC---CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 3333 33333 23688999999999999998886544
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.47 E-value=6.4e-05 Score=63.74 Aligned_cols=58 Identities=34% Similarity=0.379 Sum_probs=32.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|..|+|||||+|.|.+.... .....+++|.+........ .....++||||...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4778999999999999999964311 1123345554433221111 23567999999865
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=7.8e-05 Score=66.53 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=25.7
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHc
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g 328 (413)
.+++.+ ++..+..++.++|.+|||||||++.+.+
T Consensus 14 ~~l~~~-~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFL-GLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHH-TCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHh-hccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344444 3444556788899999999999999985
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=9.4e-05 Score=65.44 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=55.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++... ..... ...|+++|+||+|+... ....+..+.|. +
T Consensus 95 ~~~~~d~iilV~D~~~~~-s-~~~~~~~~~~i-----~~~~~----~~~piilV~NK~Dl~~~~~v~~~~~~~~~----~ 159 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKE-T-FDDLPKWMKMI-----DKYAS----EDAELLLVGNKLDCETDREITRQQGEKFA----Q 159 (192)
T ss_dssp HHHHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred HhcCCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCcEEEEEECcccccccccCHHHHHHHH----H
Confidence 345689999999998742 1 12222332211 01110 12389999999999753 22333343332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
... ...++.+||+++.|++++++.|.+.
T Consensus 160 ~~~---~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 160 QIT---GMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp TST---TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred hcC---CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 221 1468899999999999999888544
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.7e-05 Score=68.44 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=34.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
.++.++|.+|||||||+|.|++.. ......+++|.+........ .....++||||..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 87 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRAN----------------VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLL 87 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTC----------------EEEECC-----CEEEEEEEETTEEEEEEECTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------CccCCCCCcceeeeeeeeecCCCeEEEEECCCCc
Confidence 468889999999999999998522 11234566666543321111 1246789999984
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=97.45 E-value=8.9e-05 Score=74.16 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=50.2
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
...+..+|.+++|+|+.+.......++..++.. .+. | +++|+||+|+.......+.+...++.+
T Consensus 93 ~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~----------~~i-----p~iivviNK~Dl~~~~~~~~~~~~~~~~~ 157 (405)
T 2c78_A 93 ITGAAQMDGAILVVSAADGPMPQTREHILLARQ----------VGV-----PYIVVFMNKVDMVDDPELLDLVEMEVRDL 157 (405)
T ss_dssp HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----CCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----------cCC-----CEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence 345667899999999988653322233332221 132 5 899999999974210011222233344
Q ss_pred HHHcCCC-ccceEEEeEEEeecC
Q 015085 270 AREDGIS-KITKLHFVSAVKNWG 291 (413)
Q Consensus 270 ~~~~g~~-~~~~V~~vSa~~~~G 291 (413)
++..+.. ....++.+||+++.|
T Consensus 158 l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 158 LNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHhcccccCCCEEEccHHHhhh
Confidence 4544431 124689999999987
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=97.45 E-value=6.9e-05 Score=82.11 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=32.4
Q ss_pred ccccccc--CCCCCCCCCCHHHHHHHHHhhhhc-----CCccccCCCC
Q 015085 373 FDTPGLL--HPNQITTRLTREEQKLVNINKELK-----PRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l~-----~~~~~l~~~~ 413 (413)
++..|+. ..++.+..|||||+||+.+|++|. ++.|.||+|.
T Consensus 829 L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 876 (972)
T 2r6f_A 829 LYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876 (972)
T ss_dssp HHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTT
T ss_pred HHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 3344554 246788999999999999999997 3789999884
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00012 Score=65.38 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=56.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+++|+|+.+.. ++ ..+..++....... ...+ .|+++|+||+|+.. ....+.+.+++......
T Consensus 89 ~~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHE-RL-LESKEELDSLMTDE---TIAN-----VPILILGNKIDRPE-AISEERLREMFGLYGQT 157 (198)
T ss_dssp GGGGCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----SCEEEEEECTTSTT-CCCHHHHHHHHTCTTTC
T ss_pred HHhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHhCc---ccCC-----CcEEEEEECCCccc-cCCHHHHHHHhCccccc
Confidence 456789999999998753 22 22333332211000 0012 38999999999965 33445555543211000
Q ss_pred --cC---C----CccceEEEeEEEeecCcchhccchhh
Q 015085 273 --DG---I----SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 --~g---~----~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ + .....++.+||++|.|++++++.|.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 158 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 00 0 01236889999999999999988754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=61.16 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=58.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~ 268 (413)
....+..+|++++|+|+.+.. + ...+..++... ..... ...|+++|+||+|+... .........|.
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~-- 142 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-T-YNALTNWLTDA-----RMLAS----QNIVIILCGNKKDLDADREVTFLEASRFA-- 142 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH--
T ss_pred HHHHHhcCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcC----CCCcEEEEEECcccccccccCHHHHHHHH--
Confidence 445678899999999998732 1 12233333211 00100 12389999999999743 23333444433
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||+++.|++++++.+.+.
T Consensus 143 --~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 143 --QENE----LMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp --HHTT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --HHcC----CEEEEecCCCCCCHHHHHHHHHHH
Confidence 3333 368899999999999998887543
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.44 E-value=6.8e-05 Score=76.42 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=57.0
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
++....+..+|+|++|+|+.+........+.+.+. . .|+++|+||+|+.+.... ..+..|
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~------------~-----~piivV~NK~Dl~~~~~~-~~~~~~-- 354 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK------------H-----RPLILVMNKIDLVEKQLI-TSLEYP-- 354 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT------------T-----SCEEEEEECTTSSCGGGS-TTCCCC--
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc------------C-----CcEEEEEECCCCCcchhh-HHHHHh--
Confidence 44556788899999999998854433333333332 1 289999999999754211 001010
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. ....++.+||+++.|+++|++.|.+...
T Consensus 355 ------~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 355 ------E--NITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp ------T--TCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred ------c--cCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 0 1246889999999999999998866543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=97.44 E-value=4.7e-05 Score=76.71 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=58.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
+....+..+|++++|+|+ . .......+.+++... + .|+++|+||+|+...... +..++
T Consensus 106 ~~~~~l~~aD~vllVvD~-~-~~~~~~~~l~~l~~~----------~-----~piIvV~NK~Dl~~~~~~-~~~~~---- 163 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS-A-PTPYEDDVVNLFKEM----------E-----IPFVVVVNKIDVLGEKAE-ELKGL---- 163 (423)
T ss_dssp HHHHHHTSCSEEEEECSS-S-CCHHHHHHHHHHHHT----------T-----CCEEEECCCCTTTTCCCT-HHHHH----
T ss_pred HHHHHHhcCCEEEEEEeC-C-ChHHHHHHHHHHHhc----------C-----CCEEEEEeCcCCCCccHH-HHHHH----
Confidence 445567789999999998 2 222333444444321 2 389999999999865322 12222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 164 l~~~~g----~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 164 YESRYE----AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SSCCTT----CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHcC----CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 222222 3678899999999999999987766
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00017 Score=62.02 Aligned_cols=92 Identities=20% Similarity=0.121 Sum_probs=55.9
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|+.+.. + ...+.+++... ..... ....|+++|+||+|+... ....+....|. .
T Consensus 74 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~l-----~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~ 139 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRG-S-FESASELRIQL-----RRTHQ---ADHVPIILVGNKADLARCREVSVEEGRACA----V 139 (175)
T ss_dssp TTTSCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHCC-------CCEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred hcccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhc---cCCCCEEEEEEChhhccccccCHHHHHHHH----H
Confidence 456789999999998742 2 12222332211 00000 012389999999999754 23333444443 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 140 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 140 VFD----CKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp HHT----SEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HcC----CeEEEEecCCCCCHHHHHHHHHHH
Confidence 233 368899999999999999888543
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00017 Score=64.03 Aligned_cols=92 Identities=14% Similarity=0.016 Sum_probs=54.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC-------CCCChHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------SSLSPTRFEHW 265 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~-------~~~~~~~l~~~ 265 (413)
.+..+|++++|+|+.+... ...+..++... ..... ...|+++|+||+|+.. .....+....|
T Consensus 97 ~~~~~d~iilv~d~~~~~s--~~~~~~~~~~i-----~~~~~----~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~ 165 (199)
T 2p5s_A 97 YFRKADGVLLLYDVTCEKS--FLNIREWVDMI-----EDAAH----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL 165 (199)
T ss_dssp HHHHCSEEEEEEETTCHHH--HHTHHHHHHHH-----HHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH
T ss_pred HHhhCCEEEEEEECCChHH--HHHHHHHHHHH-----HHhcC----CCCCEEEEEECcccccccccccccccCHHHHHHH
Confidence 3456899999999986421 12223333211 00000 1138999999999962 22223333333
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+..+ ..++.+||+++.|++++++.|.+..
T Consensus 166 ----~~~~~----~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 ----AMTYG----ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ----HHHHT----CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----HHHcC----CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33333 3688999999999999998885543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00029 Score=59.98 Aligned_cols=92 Identities=20% Similarity=0.136 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|+.+.. + ...+..++..... .. . ....|+++|+||+|+.+.. ...+....+ .+
T Consensus 69 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~-~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~ 134 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKG-S-FEKASELRVQLRR-----AR-Q--TDDVPIILVGNKSDLVRSREVSVDEGRAC----AV 134 (166)
T ss_dssp ----CCEEEEEEETTCHH-H-HHHHHHHHHHHHH-----CC------CCCEEEEEECTTCCSSCCSCHHHHHHH----HH
T ss_pred hhhhCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----hc-C--CCCCCEEEEEeccccccccccCHHHHHHH----HH
Confidence 456789999999998742 1 2233333322100 00 0 0124899999999997642 233333333 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 135 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 135 VFD----CKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HTT----CEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HhC----CcEEEeccCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999888554
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00014 Score=63.08 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC---CCCChHHHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~---~~~~~~~l~~~~~~~~~~ 272 (413)
.+|++++|+|+.+.. ++ ..+..++... ....... ....|+++|+||+|+.. .....+....|.+ .
T Consensus 72 ~~d~~ilv~D~~~~~-s~-~~~~~~~~~i-----~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~ 139 (178)
T 2iwr_A 72 WADAVIFVFSLEDEN-SF-QAVSRLHGQL-----SSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXA----D 139 (178)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----H
T ss_pred hCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHH----h
Confidence 479999999998743 21 2233322110 0011100 01248999999999942 2333445555433 2
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ...++.+||+++.|++++++.+.+.
T Consensus 140 ~~---~~~~~~~Sa~~~~~i~~lf~~l~~~ 166 (178)
T 2iwr_A 140 MK---RCSYYETXATYGLNVDRVFQEVAQK 166 (178)
T ss_dssp HS---SEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hc---CCeEEEEeccccCCHHHHHHHHHHH
Confidence 21 1468899999999999998887543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=9.9e-05 Score=63.76 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.43 E-value=5.6e-05 Score=74.72 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=31.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
+.++|.+|||||||||+|++... .+...+++|++.......++ ....++||+|+.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~----------------~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i 237 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQ----------------KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBC
T ss_pred EEEECCCCCCHHHHHHHHHCCCc----------------cccCCcccccCCEEEEEEECCEEEEEEeCCCch
Confidence 66799999999999999996542 12234455554322111122 345788999974
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00027 Score=69.43 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++|.+|||||||||+|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6888999999999999999994
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=9.4e-05 Score=74.11 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=57.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|.+++|+|+.+.. .....+...++... +. +++++|+||+|+...... ....+.++.
T Consensus 100 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~----------~~----~~iivviNK~Dl~~~~~~-~~~~~~i~~ 164 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----------GQ----KNIIIAQNKIELVDKEKA-LENYRQIKE 164 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------TC----CCEEEEEECGGGSCHHHH-HHHHHHHHH
T ss_pred HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc----------CC----CcEEEEEECccCCCHHHH-HHHHHHHHH
Confidence 334556789999999998753 21112222222211 21 379999999999753100 011112222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+++.... ....++.+||+++.|+++|++.|.+...
T Consensus 165 ~l~~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 165 FIEGTVA-ENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHhcCc-CCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3322111 1246899999999999999999876443
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.42 E-value=8e-05 Score=63.45 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=54.7
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~~ 273 (413)
..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+.... ...+....+. +..
T Consensus 73 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~ 138 (167)
T 1c1y_A 73 KNGQGFALVYSITAQS-T-FNDLQDLREQI-----LRVKDT---EDVPMILVGNKCDLEDERVVGKEQGQNLA----RQW 138 (167)
T ss_dssp HHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHCC---SCCCEEEEEECTTCGGGCCSCHHHHHHHH----HHT
T ss_pred ccCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhhCc---CCCcEEEEEECccccccccCCHHHHHHHH----HHc
Confidence 3479999999998742 1 12222222211 001100 123899999999997532 2334444443 333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ...++.+||+++.|++++++.|.+.
T Consensus 139 ~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 139 C---NCAFLESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp T---SCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred c---CCcEEEecCCCCCCHHHHHHHHHHH
Confidence 1 1468999999999999999887543
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.6e-05 Score=78.82 Aligned_cols=58 Identities=33% Similarity=0.355 Sum_probs=26.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.+.++|.+|||||||+|.|++.. ...++..+|||++.+.....+. ....++||||+..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 57789999999999999998532 1234567889987754322222 2468999999854
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.42 E-value=5.4e-05 Score=75.70 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||||+|++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4678999999999999999953
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00012 Score=76.75 Aligned_cols=62 Identities=29% Similarity=0.234 Sum_probs=36.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEee--c--ccccccccccccccccCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRV--E--GVLPAQAKLFDTPGLLHPN 382 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~--~--~~l~~~~~liDtpGl~~~~ 382 (413)
.+.++|.+|+|||||||.|+|... + + .+.. ...++|.+...+ + ........++||||+....
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~~---~-~-----~~~~----tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKKK---G-F-----SLGS----TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS---C-S-----CCCC----SSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred EEEEECCCCCCHHHHHHhHcCCCC---c-c-----ccCC----CCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 456699999999999999997531 1 0 0000 112333333221 1 1123457899999998543
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=63.33 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=56.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ......+..+. +.
T Consensus 87 ~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 152 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRA----EQ 152 (187)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHHCC---TTCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECccccccCccCHHHHHHHH----HH
Confidence 44589999999998742 1 12233333221 111110 12389999999999753 23334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 153 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 153 WN----VNYVETSAKTRANVDKVFFDLMRE 178 (187)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999888554
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=71.58 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=56.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|+||+|+|+.+.. ++ ..+..++....... . ....|+++|+||+|+.... ....+... ...
T Consensus 228 ~~~~~ad~vilV~D~~~~~-s~-~~~~~~~~~~~~~~------~--~~~~piilV~NK~Dl~~~~-~~~~i~~~---~~~ 293 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAED------E--LRDAVLLVFANKQDLPNAM-NAAEITDK---LGL 293 (329)
T ss_dssp HHHTTEEEEEEEEETTCSS-SH-HHHHHHHHHHHTCG------G--GTTCEEEEEEECTTSTTCC-CHHHHHHH---HTC
T ss_pred HHhccCCEEEEEEECCchH-HH-HHHHHHHHHHHhhh------c--cCCCeEEEEEECccCCccc-CHHHHHHH---hch
Confidence 3456789999999998753 22 22222222110000 0 0123899999999997542 22222221 111
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||+++.|++++++.|.+.+
T Consensus 294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 00001123588999999999999999886554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00024 Score=71.75 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=53.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHH---HHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR---FEHWVRQ 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~---l~~~~~~ 268 (413)
..+..+|++++|+|+.+.......+...++... +. +++++|+||+|+.... .+. +.+.++.
T Consensus 123 ~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~----------~~----~~iIvviNK~Dl~~~~--~~~~~~i~~~~~~ 186 (434)
T 1zun_B 123 TGASTCDLAIILVDARYGVQTQTRRHSYIASLL----------GI----KHIVVAINKMDLNGFD--ERVFESIKADYLK 186 (434)
T ss_dssp HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT----------TC----CEEEEEEECTTTTTSC--HHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEEcCcCCccc--HHHHHHHHHHHHH
Confidence 345789999999999986432222222222211 22 3699999999997531 222 2233334
Q ss_pred HHHHcCC-CccceEEEeEEEeecCcchhc
Q 015085 269 RAREDGI-SKITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 269 ~~~~~g~-~~~~~V~~vSa~~~~Gi~~Ll 296 (413)
+++..+. .....++.+||++|.|+.++.
T Consensus 187 ~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 187 FAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHhCCCccCceEEEEeccCCCCccccc
Confidence 4444441 012468899999999998743
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00021 Score=63.20 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=35.8
Q ss_pred ccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 304 GKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 304 ~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
....++.++|.+|||||||++.+.+.... ...+..+.+...+.+. .-...++||||...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA---------------TLQPTWHPTSEELAIG---NIKFTTFDLGGHIQ 79 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC---------------CCCCCCSCEEEEEEET---TEEEEEEECCCSGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC---------------ccccCCCCCeEEEEEC---CEEEEEEECCCCHH
Confidence 34457888999999999999999853210 1112233344433332 23467899999753
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00035 Score=63.75 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=66.5
Q ss_pred ccccCCCCchhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEccc
Q 015085 172 TVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKID 251 (413)
Q Consensus 172 ~i~~~~p~~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~D 251 (413)
.++|+...+.|.. + .......++.+++|+|..+.. + ...+.+++..... .. + ...|++||+||+|
T Consensus 65 ~iwDtaGqe~~~~-l---~~~~~~~a~~~ilv~di~~~~-S-f~~i~~~~~~i~~-----~~-~---~~~piilVgNK~D 129 (216)
T 4dkx_A 65 QLWDTAGLERFRS-L---IPSYIRDSAAAVVVYDITNVN-S-FQQTTKWIDDVRT-----ER-G---SDVIIMLVGNKTD 129 (216)
T ss_dssp EEECCSCTTTCGG-G---HHHHHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HH-T---TSSEEEEEEECTT
T ss_pred EEEECCCchhhhh-H---HHHHhccccEEEEEeecchhH-H-HHHHHHHHHHHHH-----hc-C---CCCeEEEEeeccc
Confidence 3555444444442 2 223456789999999998742 2 2334444432211 00 1 1248999999999
Q ss_pred CCCC-CCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 252 LLPS-SLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 252 Ll~~-~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
|... ....++.++|.+ ..+ ...+.+||++|.|++++++.|...+
T Consensus 130 l~~~r~V~~~e~~~~a~----~~~----~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 130 LADKRQVSIEEGERKAK----ELN----VMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp CGGGCCSCHHHHHHHHH----HHT----CEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hHhcCcccHHHHhhHHH----HhC----CeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 9753 344455555543 344 2477899999999999998885543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00034 Score=63.37 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=57.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+.+++.... ... . ...|+++|+||+|+... ....+....|.
T Consensus 81 ~~~~~~d~vilV~D~~~~~-s-~~~~~~~l~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 145 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSS-S-YENCNHWLSELR-----ENA-D---DNVAVGLIGNKSDLAHLRAVPTEESKTFA---- 145 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHH-H-HHHHHHHHHHHH-----HHC-C-----CEEEEEECCGGGGGGCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEeCCCHH-H-HHHHHHHHHHHH-----HhC-C---CCCeEEEEEECcccccccccCHHHHHHHH----
Confidence 4466789999999998742 1 223333333210 000 0 11389999999999753 23334444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+..+ ..++.+||+++.|++++++.|.+.+..
T Consensus 146 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQ----LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTT----CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcC----CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333 368889999999999999888665443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.40 E-value=9.5e-05 Score=65.44 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=56.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
..+..+|++++|+|+.+.. ++ ..+.+++....... ...+ .|+++|+||+|+.. ....+++.+++.....
T Consensus 86 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~~---~~~~-----~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~ 154 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPE-RF-DEARVELDALFNIA---ELKD-----VPFVILGNKIDAPN-AVSEAELRSALGLLNT 154 (190)
T ss_dssp GGCTTCCEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---GGTT-----CCEEEEEECTTSTT-CCCHHHHHHHTTCSSC
T ss_pred HHHhcCCEEEEEEECCChH-HH-HHHHHHHHHHHcch---hhcC-----CCEEEEEECCCCcC-CCCHHHHHHHhCCccc
Confidence 4456889999999998753 22 22333332210000 0012 38999999999975 2233444333211000
Q ss_pred -H---cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 -E---DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 -~---~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
. ........++.+||+++.|++++++.|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 155 TGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 00001235888999999999999988743
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=61.60 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=35.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||+|.|.+..... ...+..|++.....+.... .....++||||..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSFDP--------------NINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCT--------------TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--------------CCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 57889999999999999998643110 1123344444332222111 1246789999975
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=62.69 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0003 Score=62.62 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=56.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... .... ...|+++|+||+|+... .........|. +
T Consensus 94 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 158 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRE-T-YNSLAAWLTDAR-----TLAS----PNIVVILCGNKKDLDPEREVTFLEASRFA----Q 158 (200)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHTC----TTCEEEEEEECGGGGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----HhcC----CCCcEEEEEECCCcccccccCHHHHHHHH----H
Confidence 456789999999998742 1 222333332210 0000 12389999999999743 22333444433 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 159 ~~~----~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 159 ENE----LMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999998887543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00029 Score=61.94 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=56.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+..++.... ... ....|+++|+||+|+... .........| .+
T Consensus 94 ~~~~~d~vi~v~D~~~~~-s-~~~~~~~l~~i~--------~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 158 (193)
T 2oil_A 94 YYRGAVGALLVFDLTKHQ-T-YAVVERWLKELY--------DHA-EATIVVMLVGNKSDLSQAREVPTEEARMF----AE 158 (193)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHTHHHHHHHHH--------TTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HH
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHH--------Hhc-CCCCeEEEEEECCCcccccccCHHHHHHH----HH
Confidence 456789999999998742 1 122333332210 000 012489999999999753 2233334433 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||+++.|++++++.|.+.
T Consensus 159 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 159 NNG----LLFLETSALDSTNVELAFETVLKE 185 (193)
T ss_dssp HTT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 368899999999999999887543
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=66.11 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=56.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+..+|++++|+|+.+.. + ...+..++... .....+ .|+++|+||+|+....... ....+. +..
T Consensus 85 ~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~-~~~~~~----~~~ 147 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRV-T-YKNVPNWHRDL-----VRVCEN-----IPIVLCGNKVDIKDRKVKA-KSIVFH----RKK 147 (221)
T ss_dssp HTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHSTT-----CCEEEEEECTTSSSCSSCG-GGCCHH----HHH
T ss_pred HhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhCCC-----CCEEEEEECCccccccccH-HHHHHH----HHc
Confidence 45689999999998742 1 22233333221 011112 3899999999997653322 222232 222
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+ ..++.+||+++.|++++++.|.+...
T Consensus 148 ~----~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 N----LQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp T----CEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred C----CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3 36889999999999999988855443
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00028 Score=63.34 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=55.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~ 257 (413)
..+..+|++++|+|+.+.. ++ ..+ ..++... ..+..+ .|+++|+||+|+... ..
T Consensus 95 ~~~~~~d~~ilv~D~~~~~-s~-~~~~~~~~~~i-----~~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 162 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPE-TL-DSVLKKWKGEI-----QEFCPN-----TKMLLVGCKSDLRTDVSTLVELSNHRQTPV 162 (205)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----CEEEEEEECGGGGGCHHHHHHHHTTTCCCC
T ss_pred hhccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HHHCCC-----CCEEEEEechhhccchhhhhhhcccccCCC
Confidence 3567899999999998732 21 122 2222211 111112 389999999999742 12
Q ss_pred ChHHHHHHHHHHHHHcCCCccceEEEeEEE-eecCcchhccchhhh
Q 015085 258 SPTRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVDL 302 (413)
Q Consensus 258 ~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~-~~~Gi~~Ll~~I~~l 302 (413)
..+....|. +..+ ...++.+||+ .+.|++++++.|.+.
T Consensus 163 ~~~~~~~~~----~~~~---~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 163 SYDQGANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp CHHHHHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH----HHcC---CCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 223333433 2333 1368899998 689999999887554
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=97.37 E-value=4.3e-05 Score=78.30 Aligned_cols=57 Identities=32% Similarity=0.446 Sum_probs=40.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
++.++|.+|||||||||.|++... ..++..||||++.+.....+. ....++||||+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 677899999999999999996421 224567888887643322222 246899999997
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00024 Score=73.55 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=36.3
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCc------------------EEEE----cCCCCcHHHHHHHHHccCc
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGN------------------VWAI----GAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~------------------~~~v----G~ng~GKSTLin~L~g~~~ 331 (413)
+|++.||.++.|+++|++.|.++.+.... ++=+ .++..|+-++++...|.+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~sG~l~ 325 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIASGQYQ 325 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEESCEE
T ss_pred EEEeccccCCccHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEecCeEc
Confidence 68888999999999999988776653221 1113 2347888888888877654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=64.07 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=56.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+.+..|.. .
T Consensus 83 ~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 148 (206)
T 2bov_A 83 FRSGEGFLCVFSITEME-S-FAATADFREQI-----LRVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----Q 148 (206)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHHTTC---SCCCEEEEEECTTCGGGCCSCHHHHHHHHH----H
T ss_pred HhhCCEEEEEEECCCHH-H-HHHHHHHHHHH-----HHhcCC---CCCCEEEEEeccCccccccccHHHHHHHHH----H
Confidence 44589999999998742 1 12233333221 111110 12489999999999753 333444555443 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 149 ~~----~~~~~~Sa~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 149 WN----VNYVETSAKTRANVDKVFFDLMRE 174 (206)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHHHH
T ss_pred hC----CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 33 368899999999999999888544
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0001 Score=72.28 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCC-chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGS-FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s-~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
...+.++.++++|+|+|++++... ....+..++... ..+.... ...|+++|+||+|+... .+.++.+
T Consensus 229 ~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL-----~~~~~~l--~~~p~ilV~NK~Dl~~~---~e~~~~l-- 296 (342)
T 1lnz_A 229 QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL-----SEYNLRL--TERPQIIVANKMDMPEA---AENLEAF-- 296 (342)
T ss_dssp HHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHH-----HHSCSST--TTSCBCBEEECTTSTTH---HHHHHHH--
T ss_pred HHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHH-----HHhhhhh--cCCCEEEEEECccCCCC---HHHHHHH--
Confidence 334445668999999999875321 122332222211 1111000 12389999999999742 1222222
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+.... ...++.+||+++.|+++|++.|.+.+.
T Consensus 297 --~~~l~~--~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 297 --KEKLTD--DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp --HHHCCS--CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred --HHHhhc--CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 222221 135788999999999999998866543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00024 Score=70.87 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=57.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....+..+|.+++|+|+.+.......+...++.. .+. | +++|+||+|+.......+.+.+-+++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~~v-----p~iivviNK~Dl~~~~~~~~~~~~~~~~ 147 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQ----------IGV-----EHVVVYVNKADAVQDSEMVELVELEIRE 147 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCC-----CeEEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4456778999999999998543222222222221 132 5 78999999997421001122233344
Q ss_pred HHHHcCCC-ccceEEEeEEEeecC----------cchhccchhhhc
Q 015085 269 RAREDGIS-KITKLHFVSAVKNWG----------LKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~-~~~~V~~vSa~~~~G----------i~~Ll~~I~~l~ 303 (413)
+++..+.. ....++.+||+++.+ +.+|++.|.++.
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 45555431 123689999999875 567777775533
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=63.01 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=64.34 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=54.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+... ...+..++... ...... ...|+++|+||+|+... ....+....| .
T Consensus 89 ~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~----~ 154 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMAS--FHSLPAWIEEC-----KQHLLA---NDIPRILVGNKCDLRSAIQVPTDLAQKF----A 154 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHH-----HHHCCC---SCCCEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHhcCCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECccccccceeCHHHHHHH----H
Confidence 34567899999999986321 11222332211 011000 12389999999999754 2233333333 3
Q ss_pred HHcCCCccceEEEeEEEee---cCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKN---WGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~---~Gi~~Ll~~I~~ 301 (413)
+..+ ..++.+||+++ .|++++++.|.+
T Consensus 155 ~~~~----~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 155 DTHS----MPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp HHTT----CCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred HHcC----CEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 3343 36889999999 888888877743
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.36 E-value=9.3e-05 Score=63.26 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=55.2
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+... ...+..++... ....... ...|+++|+||+|+.+. .........+ .+.
T Consensus 72 ~~~~~~~i~v~d~~~~~~--~~~~~~~~~~i-----~~~~~~~--~~~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~ 138 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQS--LEELKPIYEQI-----CEIKGDV--ESIPIMLVGNKCDESPSREVQSSEAEAL----ART 138 (172)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTTHHHHHHH-----HHHHC-----CCCEEEEEECGGGGGGCCSCHHHHHHH----HHH
T ss_pred cccCCEEEEEEECcCHHH--HHHHHHHHHHH-----HHHhCCC--CCCCEEEEEEccccccccccCHHHHHHH----HHH
Confidence 345799999999986321 11122222111 0010000 11389999999999754 2222333333 223
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+ ..++.+||+++.|++++++.|.+...
T Consensus 139 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 139 WK----CAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred hC----CeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 33 36889999999999999999866553
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=62.40 Aligned_cols=58 Identities=26% Similarity=0.171 Sum_probs=29.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|.+.+... ...+..+|++...........-...++||||...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED---------------GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-------------------------CEEEEEEEETTEEEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHcCccc---------------cCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 578899999999999999985321 1223445566542211101111356889999753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=62.66 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00022 Score=63.44 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=58.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|++++|+|+.+.. + ...+..++..... .. . ....|+++|+||+|+... .........|.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i~~-----~~-~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~---- 156 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLH-S-FQVIESLYQKLHE-----GH-G--KTRVPVVLVGNKADLSPEREVQAVEGKKLA---- 156 (201)
T ss_dssp GGTTTCCEEEEEEETTCHH-H-HHHHHHHHHHHHC-------------CCCEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHHhcCCEEEEEEeCCCHH-H-HHHHHHHHHHHHH-----hc-C--CCCCCEEEEEECccCccccccCHHHHHHHH----
Confidence 3456789999999998642 1 2233333322100 00 0 012389999999999754 23333444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
+..+ ..++.+||+++.|++++++.|.+...
T Consensus 157 ~~~~----~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 157 ESWG----ATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHT----CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhC----CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333 36889999999999999988865543
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=79.01 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCcEEEEEEeCCCCCCCchH-HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~-~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+.+|+|++|+|+.......+. .+.+.+... + .|+++|+||+|++++..... ..... +..
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~----------g-----~pvIlVlNKiDlv~~~~~~~---~il~~--~~~ 245 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQ----------G-----QRTIGVITKLDLMDEGTDAR---DVLEN--KLL 245 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTT----------C-----SSEEEEEECTTSSCTTCCSH---HHHTT--CSS
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhc----------C-----CCEEEEEeCcccCCcchhhH---HHHHH--Hhh
Confidence 678999999999876554444 455555432 3 38999999999986643221 11110 000
Q ss_pred CC-CccceEEEeEEEeecCcchhccchhh
Q 015085 274 GI-SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~-~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. .++..|+.+||+++.|+++|++.|..
T Consensus 246 ~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 246 PLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hhhccCCceEEecccccccchhHHHHHHH
Confidence 00 13356888999999999999998865
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00032 Score=62.39 Aligned_cols=92 Identities=23% Similarity=0.128 Sum_probs=56.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++.... .... ....|+++|+||+|+... ....+....|. +.
T Consensus 94 ~~~~d~~ilv~d~~~~~-s-~~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~a----~~ 159 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRR-S-FSKVPETLLRLR-----AGRP---HHDLPVILVGNKSDLARSREVSLEEGRHLA----GT 159 (195)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHST---TSCCCEEEEEECTTCTTTCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECCCHH-H-HHHHHHHHHHHH-----HhcC---CCCCCEEEEeechhccccCCcCHHHHHHHH----HH
Confidence 34579999999998742 1 122333332210 0000 012389999999999754 23334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||+++.|++++++.+.+..
T Consensus 160 ~~----~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 160 LS----CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TT----CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hC----CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 33 3688999999999999998886543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0002 Score=63.10 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=57.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|+.+.. + ...+..++..... .......+ .|+++|+||+|+... ....+....|.+
T Consensus 88 ~~~~~~~~ilv~d~~~~~-s-~~~~~~~~~~i~~-~~~~~~~~-----~piilv~nK~Dl~~~~~v~~~~~~~~~~---- 155 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQ-S-FDSSSSYLELLAL-HAKETQRS-----IPALLLGNKLDMAQYRQVTKAEGVALAG---- 155 (187)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-HHHHHCCC-----CCEEEEEECGGGGGGCSSCHHHHHHHHH----
T ss_pred HHhhCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-HhhccCCC-----CCEEEEEECcchhhcCccCHHHHHHHHH----
Confidence 345689999999998632 2 2233333332210 00000012 389999999999643 333444555443
Q ss_pred HcCCCccceEEEeEE-EeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSA-VKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa-~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+|| +++.|++++++.|.+.
T Consensus 156 ~~~----~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 156 RFG----CLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp HHT----CEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred HcC----CcEEEEeecCccccHHHHHHHHHHH
Confidence 333 36889999 8999999999887554
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=3e-05 Score=69.22 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=52.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchH---HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH------
Q 015085 193 ASGARSVVLMVVDAADFDGSFPR---KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE------ 263 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~---~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~------ 263 (413)
.+..+|++++|+|+.+... +.. .+.+.+... ..+ .|+++|+||+|+.......+.+.
T Consensus 98 ~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~--------~~~-----~piilv~NK~Dl~~~~~~~~~~~~~~~~~ 163 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHH--------CPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTP 163 (204)
Confidence 4567899999999987532 211 222222211 001 38999999999975421111000
Q ss_pred ---HHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 264 ---HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 264 ---~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+....+.+..+ ...++.+||+++.|++++++.|.+
T Consensus 164 v~~~~~~~~~~~~~---~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 164 ITYPQGLAMAKEIG---AVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 00111122222 125788999999999999988743
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00015 Score=61.78 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5778999999999999999864
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00018 Score=63.25 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999953
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00013 Score=64.19 Aligned_cols=90 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC---CCCChHHHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~---~~~~~~~l~~~~~~~~~~ 272 (413)
.+|++++|+|+.+.. + ...+..++.... .+. + ....|+++|+||+|+.. .....+....|. +.
T Consensus 85 ~~~~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~-~--~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~ 150 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEI-S-FQTVYNYFLRLC-----SFR-N--ASEVPMVLVGTQDAISAANPRVIDDSRARKLS----TD 150 (184)
T ss_dssp HCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----TTS-C--GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----HH
T ss_pred CCCEEEEEEECcCHH-H-HHHHHHHHHHHH-----Hhc-C--CCCCCEEEEEECcccccccccccCHHHHHHHH----HH
Confidence 479999999998742 1 222333333210 000 0 01138999999999952 223334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ...++.+||+++.|++++++.+.+.
T Consensus 151 ~~---~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 151 LK---RCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp TT---TCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cC---CCeEEEecCCCCCCHHHHHHHHHHH
Confidence 32 1367899999999999999887543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=76.25 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=22.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC-CCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA-GRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~-~~G~~~ 338 (413)
.+.++|+||||||||+++|+|+..| ++|.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt 78 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVT 78 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence 3777999999999999999999878 678654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.32 E-value=4.5e-05 Score=77.76 Aligned_cols=57 Identities=35% Similarity=0.480 Sum_probs=35.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
.+.++|.+|||||||+|.|++.. ...++..+|||++.+.....+. ....++||||+.
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~---------------~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~ 283 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD---------------RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---------------BSCCSCCTTCCHHHHHHEEEETTEEEEECC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC---------------cccccCCCCeeEEEEEEEEEECCEEEEEEECCccc
Confidence 57789999999999999999642 1223456888876643221122 246799999974
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00023 Score=60.86 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||+|.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999954
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00019 Score=62.50 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00026 Score=60.02 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=55.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|.+++|+|+.+... ...+..++... ..+... ...|+++|+||+|+... .........+. +.
T Consensus 72 ~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i-----~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 137 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQS--FQDIKPMRDQI-----IRVKRY---EKVPVILVGNKVDLESEREVSSSEGRALA----EE 137 (167)
T ss_dssp HHHCSEEEEEEETTCHHH--HHHHHHHHHHH-----HHHTTT---SCCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEeCCCHHH--HHHHHHHHHHH-----HHhcCC---CCCCEEEEEECCcccccccCCHHHHHHHH----HH
Confidence 445799999999987421 12222222211 011100 12389999999999753 22333334333 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++.|++++++.|.+.
T Consensus 138 ~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 138 WG----CPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HT----SCEEEECTTCHHHHHHHHHHHHHH
T ss_pred hC----CCEEEecCCCCcCHHHHHHHHHHH
Confidence 33 358899999999999999887543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00013 Score=74.64 Aligned_cols=43 Identities=16% Similarity=0.003 Sum_probs=33.8
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccc
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE 340 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~ 340 (413)
++.+ ++.... ++++ +|+||+|||||+++|+|++.|++|.+...
T Consensus 20 l~~v-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 20 FFAR-TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEEE-EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred ccce-EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 4455 555555 5554 99999999999999999999999986543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=5.9e-05 Score=65.07 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
.++++++|+|+.++. .+..++.... ..+ .|+++|+||+|+..........+.|. +..+
T Consensus 81 ~~~~~i~v~D~~~~~-----~~~~~~~~~~-------~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~- 138 (165)
T 2wji_A 81 KPDLVVNIVDATALE-----RNLYLTLQLM-------EMG-----ANLLLALNKMDLAKSLGIEIDVDKLE----KILG- 138 (165)
T ss_dssp CCSEEEEEEETTCHH-----HHHHHHHHHH-------HTT-----CCEEEEEECHHHHHHTTCCCCHHHHH----HHHT-
T ss_pred CCCEEEEEecCCchh-----HhHHHHHHHH-------hcC-----CCEEEEEEchHhccccChhhHHHHHH----HHhC-
Confidence 689999999998632 2222322210 013 38999999999863211111233332 2233
Q ss_pred CccceEEEeEEEeecCcchhccchhhh
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||+++.|++++++.+.+.
T Consensus 139 ---~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 139 ---VKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHHH
T ss_pred ---CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358899999999999999887543
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=68.11 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368889999999999999999764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=4.7e-05 Score=72.11 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=55.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|++++|+|+.+.. ....+...+... +. |+++|+||+|+............+ .+..
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~----------~~-----p~ivv~NK~Dl~~~~~~~~~~~~l----~~~l 141 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLEL----------GI-----PCIVALNMLDIAEKQNIRIEIDAL----SARL 141 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHH----------TC-----CEEEEEECHHHHHHTTEEECHHHH----HHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhc----------CC-----CEEEEEECccchhhhhHHHHHHHH----HHhc
Confidence 46899999999998732 112222222211 33 899999999986432111122222 2233
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
| ..++.+||++|.|+++|++.|.+....
T Consensus 142 g----~~~i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 142 G----CPVIPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp T----SCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred C----CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4 368999999999999999998665543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=8.7e-05 Score=68.01 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
+.|++++ +|+||||||||+++|+|..++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3456555 999999999999999999875
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00013 Score=64.65 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=55.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
+..+|++++|+|+.+.. + ...+..++... ..+... ...|+++|+||+|+... ....+....+.+ .
T Consensus 96 ~~~~d~iilv~D~~~~~-s-~~~~~~~~~~i-----~~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~ 161 (196)
T 2atv_A 96 MRWGEGFVLVYDITDRG-S-FEEVLPLKNIL-----DEIKKP---KNVTLILVGNKADLDHSRQVSTEEGEKLAT----E 161 (196)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHTT---SCCCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hccCCEEEEEEECcCHH-H-HHHHHHHHHHH-----HHhhCC---CCCcEEEEEECcccccccccCHHHHHHHHH----H
Confidence 44579999999998743 1 12222222211 001100 12389999999999753 333344444433 2
Q ss_pred cCCCccceEEEeEEEeec-Ccchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNW-GLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~-Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||+++. |++++++.|.+.
T Consensus 162 ~~----~~~~~~Sa~~g~~gi~~l~~~l~~~ 188 (196)
T 2atv_A 162 LA----CAFYECSACTGEGNITEIFYELCRE 188 (196)
T ss_dssp HT----SEEEECCTTTCTTCHHHHHHHHHHH
T ss_pred hC----CeEEEECCCcCCcCHHHHHHHHHHH
Confidence 33 368899999999 999999887544
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00043 Score=59.60 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~ 273 (413)
..+|.+++|+|+.+.. + ...+..++..... .. .. ...|+++|+||+|+... .........| .+..
T Consensus 79 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~----~~-~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 144 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQ-S-FNEVGKLFTQILR----VK-DR---DDFPVVLVGNKADLESQRQVPRSEASAF----GASH 144 (181)
T ss_dssp HHCSEEEEEEETTCHH-H-HHHHHHHHHHHHH----HH-TS---SCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred hhCCEEEEEEeCCCHH-H-HHHHHHHHHHHHH----hc-CC---CCCCEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 3479999999998732 1 1223333322100 00 01 12389999999999753 2333333333 2333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.|.+.
T Consensus 145 ~----~~~~~~Sa~~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 145 H----VAYFEASAKLRLNVDEAFEQLVRA 169 (181)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----CeEEEecCCCCCCHHHHHHHHHHH
Confidence 3 368899999999999999888554
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00026 Score=62.83 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00071 Score=71.06 Aligned_cols=119 Identities=21% Similarity=0.172 Sum_probs=75.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+++|+|+.+.............. ..+. |+++|+||+|+.... .... ..++...
T Consensus 91 ~l~~aD~aILVVDa~~gv~~qt~~~~~~~~----------~~~i-----piIvViNKiDl~~a~--~~~v---~~ei~~~ 150 (599)
T 3cb4_D 91 SLAACEGALLVVDAGQGVEAQTLANCYTAM----------EMDL-----EVVPVLNKIDLPAAD--PERV---AEEIEDI 150 (599)
T ss_dssp HHHHCSEEEEEEETTTCCCTHHHHHHHHHH----------HTTC-----EEEEEEECTTSTTCC--HHHH---HHHHHHH
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHH----------HCCC-----CEEEeeeccCccccc--HHHH---HHHHHHH
Confidence 345579999999998865432222211111 1133 899999999997542 2222 2222233
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcccC-------CcEEEEcC---CCCcHHHHHHHHHccCcC
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR-------GNVWAIGA---QNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~-------g~~~~vG~---ng~GKSTLin~L~g~~~~ 332 (413)
.+. ...+++.+||++|.|+++|++.|.+..... -...++.. ++.|+.++++.+.|.+..
T Consensus 151 lg~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~ 219 (599)
T 3cb4_D 151 VGI-DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRK 219 (599)
T ss_dssp TCC-CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEES
T ss_pred hCC-CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEec
Confidence 332 223589999999999999999987665432 12233333 789999999999887754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00022 Score=62.03 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999854
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=97.28 E-value=9.3e-05 Score=73.00 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=32.4
Q ss_pred cchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 297 DDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 297 ~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+.+ ++....|. +.++|+||+|||||+|+|++.+++..|.+.
T Consensus 166 ~~l-~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 166 SFL-RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHH-HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHH-HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 555 55555565 555999999999999999999998888643
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00029 Score=60.17 Aligned_cols=90 Identities=23% Similarity=0.141 Sum_probs=55.3
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~ 273 (413)
..+|++++|+|+.+.. + ...+..++..... ... ....|+++|+||+|+... ....+....+ .+..
T Consensus 74 ~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (169)
T 3q85_A 74 QTGDAFLIVFSVTDRR-S-FSKVPETLLRLRA-----GRP---HHDLPVILVGNKSDLARSREVSLEEGRHL----AGTL 139 (169)
T ss_dssp HHCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HST---TSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred ccCCEEEEEEECCChH-H-HHHHHHHHHHHHh-----ccc---CCCCCEEEEeeCcchhhcccCCHHHHHHH----HHHc
Confidence 3479999999998732 1 1223333322100 000 012489999999999743 3333444444 3333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ..++.+||+++.|++++++.+.+.
T Consensus 140 ~----~~~~~~Sa~~~~~v~~l~~~l~~~ 164 (169)
T 3q85_A 140 S----CKHIETSAALHHNTRELFEGAVRQ 164 (169)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----CcEEEecCccCCCHHHHHHHHHHH
Confidence 3 368899999999999999887554
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=64.12 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00025 Score=61.33 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999864
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=3.8e-05 Score=68.34 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=49.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~ 271 (413)
.+..+|++++|+|+.+.. + ...+.+++... . ... ....|+++|+||+|+.... ........+. +
T Consensus 102 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~i-----~---~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~ 166 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQE-S-FNNVKQWLQEI-----D---RYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA----D 166 (199)
T ss_dssp --CCCSEEEECC-CCCSH-H-HHHHHHHHHHH-----H---SCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHH----H
T ss_pred HhhcCCEEEEEEECCCHH-H-HHHHHHHHHHH-----H---Hhc-cCCCCEEEEEECccCCccccCCHHHHHHHH----H
Confidence 456789999999998742 2 23333333321 0 000 1124899999999997542 2222233332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|++++++.|.+...
T Consensus 167 ~~~----~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLG----IPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTT----CCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HcC----CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233 25778999999999999988865543
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=63.76 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=34.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|.+|||||||++.|.+... ....+..|++...+.+. .-...++||||..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~---------------~~~~~t~g~~~~~~~~~---~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDI---------------SHITPTQGFNIKSVQSQ---GFKLNVWDIGGQR 71 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCC---------------EEEEEETTEEEEEEEET---TEEEEEEECSSCG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---------------CcccCcCCeEEEEEEEC---CEEEEEEECCCCH
Confidence 4678899999999999999985310 01122344444444332 2346788999864
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00041 Score=72.85 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=57.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..+|.+|+|+|+.+.............. ..+. |+++|+||+|+.... .. ....++.+.
T Consensus 93 ~l~~aD~aILVVDa~~gv~~qt~~~~~~a~----------~~~i-----piIvviNKiDl~~a~--~~---~v~~el~~~ 152 (600)
T 2ywe_A 93 ALAACEGALLLIDASQGIEAQTVANFWKAV----------EQDL-----VIIPVINKIDLPSAD--VD---RVKKQIEEV 152 (600)
T ss_dssp HHHTCSEEEEEEETTTBCCHHHHHHHHHHH----------HTTC-----EEEEEEECTTSTTCC--HH---HHHHHHHHT
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHH----------HCCC-----CEEEEEeccCccccC--HH---HHHHHHHHh
Confidence 455689999999998864322111111111 1133 899999999997542 22 222333333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+. ...+++.+||++|.|+++|++.|.+...
T Consensus 153 lg~-~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 153 LGL-DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp SCC-CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCC-CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 343 2235899999999999999998876654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00049 Score=61.61 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=35.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
....++++++|+|+.++..+ ...+.+++...... .... ....|+++|+||+|+.... ....+.+++..
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~----~~~~--~~~~piilv~nK~Dl~~~~-~~~~~~~~l~~ 142 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQRE-VKDVAEFLYQVLID----SMAL--KNSPSLLIACNKQDIAMAK-SAKLIQQQLEK 142 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHH----HHTS--TTCCEEEEEEECTTSTTCC-CHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCcCHH-HHHHHHHHHHHHhh----hhhc--ccCCCEEEEEECCCCCCcc-cHHHHHHHHHH
Confidence 35678999999999863211 11222222211100 0000 0124899999999997653 23344444443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00024 Score=60.48 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00027 Score=60.65 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5788999999999999999953
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=97.25 E-value=4e-05 Score=71.91 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+.+.. ....+..++... + .|+++|+||+|+............+ .+..|
T Consensus 82 ~~~d~vi~VvDas~~~--~~~~l~~~l~~~----------~-----~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLE--RHLYLTSQLFEL----------G-----KPVVVALNMMDIAEHRGISIDTEKL----ESLLG 140 (256)
T ss_dssp SCCSEEEEEEEGGGHH--HHHHHHHHHTTS----------C-----SCEEEEEECHHHHHHTTCEECHHHH----HHHHC
T ss_pred CCCCEEEEEeeCCCch--hHHHHHHHHHHc----------C-----CCEEEEEEChhcCCcCCcHHHHHHH----HHHcC
Confidence 6799999999998731 112222222211 3 3899999999987542111222222 22334
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||+++.|+++|++.|.+.
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ----CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999998655
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.25 E-value=6.8e-05 Score=70.62 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=31.3
Q ss_pred hhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCC-CCCCc
Q 015085 294 SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAG-RGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~-~G~~~ 338 (413)
.+++.+ + ..+|.++ ++|+||+|||||+++|+|.+.+. +|.+.
T Consensus 15 ~vl~~i-~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~ 58 (261)
T 2eyu_A 15 DKVLEL-C--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII 58 (261)
T ss_dssp THHHHG-G--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHH-h--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence 455555 2 3455554 59999999999999999998876 77543
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00027 Score=62.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999863
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=6.5e-05 Score=73.43 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=33.5
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ ++...++.++. +|+||||||||+|+|+|.+.+..|.+
T Consensus 42 ~~~l~~i-~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 42 RDLIDAV-LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HHHHHHH-GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhC-CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 4566666 45455666555 99999999999999999887777754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=60.33 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999964
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0004 Score=64.77 Aligned_cols=89 Identities=19% Similarity=0.069 Sum_probs=53.0
Q ss_pred CCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 196 ARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
.+|++++|+|+.+.. .++ ..+.+++....... ...+ .|+++|+||+||... ..++ ..+.+.+...
T Consensus 162 ~ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~---~~~~-----~piilV~NK~Dl~~~----~~v~-~~~~~~~~~~ 227 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQL---AKTK-----KPIVVVLTKCDEGVE----RYIR-DAHTFALSKK 227 (255)
T ss_dssp ECCEEEEEEECBC----CH-HHHHHHHHHHHHHH---HHTT-----CCEEEEEECGGGBCH----HHHH-HHHHHHHTSS
T ss_pred cCCEEEEEEECCCCchhhH-HHHHHHHHHHHHHh---ccCC-----CCEEEEEEccccccc----HHHH-HHHHHHHhcC
Confidence 589999999998851 233 33444443221100 0012 389999999999632 2222 2223333221
Q ss_pred CCccceEEEeEEEeecCcchhccchhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...++.+||+++.|++++++.|.+
T Consensus 228 ---~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 228 ---NLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ---SCCEEECBTTTTBSHHHHHHHHHH
T ss_pred ---CCeEEEEECCCCCCHHHHHHHHHH
Confidence 135889999999999999988754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00037 Score=73.49 Aligned_cols=98 Identities=9% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHhhhcCCCcEEEEEEeCCCC--CCC--chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADF--DGS--FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRF 262 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~--~~s--~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l 262 (413)
+.....+..+|++|+|||+.+. ..+ ......+.+... ...+ .+++|+|+||+|+.... ...+.+
T Consensus 260 ~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-------~~lg----i~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 260 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSLG----IHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-------HTTT----CCEEEEEEECTTTTTTCHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-------HHcC----CCeEEEEEecccccchhHHHHHHH
Confidence 4556678889999999999862 111 111222221110 0012 23699999999998531 111233
Q ss_pred HHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhc
Q 015085 263 EHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 263 ~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll 296 (413)
...+..++...|... ...++.+||++|.|+.++.
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 444444555555321 2468999999999998763
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00027 Score=59.94 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00027 Score=59.84 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=62.44 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|.+|||||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999753
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00024 Score=68.00 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 368889999999999999999864
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=4.7e-05 Score=74.79 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.+.++|++|||||||||.|++...+..|
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~ 103 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGH 103 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence 4556999999999999999986544433
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00043 Score=66.26 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=56.6
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHH-HHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------C
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------S 256 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~-~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~ 256 (413)
...+..+|++++|+|+.+.. ++ ..+. .++... .....+ .|+++|+||+|+... .
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~~-----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 288 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPA-SF-HHVRAKWYPEV-----RHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTP 288 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-----HHHCTT-----SCEEEEEECHHHHTCHHHHHHHHHTTCCC
T ss_pred HHhccCCCEEEEEEeCCCHH-HH-HHHHHHHHHHH-----HhhCCC-----CcEEEEEEchhcccccchhhhcccccccc
Confidence 34567899999999998742 11 1221 121111 111112 389999999999653 1
Q ss_pred CChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 257 ~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........| .+..+ ...++.+||+++.|++++++.|.+..
T Consensus 289 v~~~~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 289 ITYPQGLAM----AKEIG---AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CCHHHHHHH----HHHTT---CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccHHHHHHH----HHHcC---CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 122223333 23333 23689999999999999998885543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00038 Score=67.29 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhhc------CCccccCCCC
Q 015085 382 NQITTRLTREEQKLVNINKELK------PRTYRIKVSL 413 (413)
Q Consensus 382 ~~~~~~LS~ge~q~v~i~r~l~------~~~~~l~~~~ 413 (413)
+.....||+||+|++.++++|. ++.+.||+|.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~ 251 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVD 251 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCC
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 4556789999999999999983 5788898874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00029 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999853
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00038 Score=61.39 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=35.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||+|.|.+.... ....+..|++.....+... ......++||||..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFD--------------HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCC--------------TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--------------CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 6788999999999999999864311 0112334444433322211 11246789999964
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00042 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.+.++|++|||||||+|.|++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 467799999999999999997653
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=66.24 Aligned_cols=95 Identities=14% Similarity=0.182 Sum_probs=55.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCch------HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH---
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFP------RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT--- 260 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~------~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~--- 260 (413)
....+..+|.+++|+|+.+. ++. ....+.+... ...+. +++++|+||+|+.......+
T Consensus 101 ~~~~~~~aD~~ilVvDa~~g--sfe~~~~~~~qt~~~~~~~-------~~~~~----~~iivviNK~Dl~~~~~~~~~~~ 167 (435)
T 1jny_A 101 MITGASQADAAILVVSAKKG--EYEAGMSVEGQTREHIILA-------KTMGL----DQLIVAVNKMDLTEPPYDEKRYK 167 (435)
T ss_dssp HHHTSSCCSEEEEEEECSTT--HHHHHHSTTCHHHHHHHHH-------HHTTC----TTCEEEEECGGGSSSTTCHHHHH
T ss_pred HHhhhhhcCEEEEEEECCCC--ccccccccchHHHHHHHHH-------HHcCC----CeEEEEEEcccCCCccccHHHHH
Confidence 34567889999999999973 221 1112211100 00122 36899999999986321222
Q ss_pred HHHHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhcc
Q 015085 261 RFEHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
.+.+.++.+++..+... ...++.+||++|.|+.++.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 168 EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 23334444555555311 14689999999999875543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00096 Score=65.42 Aligned_cols=93 Identities=13% Similarity=0.208 Sum_probs=56.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....+|.+++|+|+.+..+-......+++.... ....+ .|+++|+||+|+... ..+.+.. ..++
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~-----~~~~~-----~piilV~NK~Dl~~~----~~~~~~~-~~~~ 306 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH-----GEFKD-----LPFLVVINKIDVADE----ENIKRLE-KFVK 306 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH-----HHTTT-----SCEEEEECCTTTCCH----HHHHHHH-HHHH
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH-----HhcCC-----CCEEEEEECcccCCh----HHHHHHH-HHHH
Confidence 3444689999999988754311223333333210 00013 389999999999743 2232222 2233
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+||++|.|+++|++.|.+..
T Consensus 307 ~~~----~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 307 EKG----LNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp HTT----CCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred hcC----CCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 333 3588999999999999999886544
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0004 Score=58.99 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||+|.|.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999985
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00034 Score=62.09 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|++|||||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57779999999999999999754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=70.33 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
++.++|.+|+|||||+|+|++...
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 578899999999999999987543
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00044 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|+|||||+|.|.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3678899999999999999985
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00036 Score=60.48 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6888999999999999999953
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00065 Score=59.17 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=38.0
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCcc----ceEEEeEEEeecCcchhccchhhhc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKI----TKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~----~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
|+++|+||+|+.... ....+++ .+..+. .+ ..++.+||+++.|++++++.|.+..
T Consensus 124 piilv~nK~Dl~~~~--~~~~~~~----~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV--QEVINFL----AEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp CEEEEEECGGGCSCH--HHHHHHH----HHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEeehHhccCcH--HHHHHHH----HHHhhh-hhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 899999999997542 2233333 333442 11 2478999999999999998886544
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00037 Score=60.98 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999953
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00037 Score=61.12 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|+|||||+|.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57889999999999999999753
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00045 Score=58.73 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|+|||||+|.|++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999985
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00014 Score=71.94 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++|.+|||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47789999999999999999753
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=64.22 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.++++|+||||||||+++|++.++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 456699999999999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00042 Score=58.51 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00031 Score=62.06 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00029 Score=62.69 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00012 Score=66.15 Aligned_cols=28 Identities=39% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
.+|.+++ +|+||+|||||+++|++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4455554 999999999999999998875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00023 Score=63.47 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=21.5
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.|.+++ +|+||||||||+++|++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 455555 9999999999999999986
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00043 Score=71.75 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~~ 273 (413)
..+|++++|+|++++. ....+.+.+... ..+ .|+++|+||+|+.... ...+.+..+ +...
T Consensus 120 ~~~d~ii~V~D~s~~~--~~~~~~~~l~~~--------~~~-----~pvilV~NK~Dl~~~~~v~~~~~~~~----~~~~ 180 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDS--NKHYWLRHIEKY--------GGK-----SPVIVVMNKIDENPSYNIEQKKINER----FPAI 180 (535)
T ss_dssp HSSEEEEEEECGGGGG--GHHHHHHHHHHH--------SSS-----CCEEEEECCTTTCTTCCCCHHHHHHH----CGGG
T ss_pred cCCcEEEEEEeCCCch--hHHHHHHHHHHh--------CCC-----CCEEEEEECCCcccccccCHHHHHHH----HHhc
Confidence 4589999999998751 122333333221 112 3899999999997642 232233322 2223
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
+ ..++.+||+++.|+++|++.|.+....
T Consensus 181 ~----~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 181 E----NRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp T----TCEEECCC-----CTTHHHHHHHHHTC
T ss_pred C----CceEEEecCcccCHHHHHHHHHHHHhc
Confidence 3 358999999999999999988765543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0004 Score=62.20 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6788999999999999999853
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00062 Score=59.79 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999964
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=60.57 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00063 Score=67.10 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=58.2
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHH---HHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRK---VAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~---l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
.+...+..+|++++|+|+.+........ +.+++... +. ...|+++|+||+|++... .......
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----------~~--~~~p~ilV~NK~Dl~~~~--~~~~~~~ 315 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREI----------GV--SGKPILVTLNKIDKINGD--LYKKLDL 315 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----------TC--CSCCEEEEEECGGGCCSC--HHHHHHH
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----------Cc--CCCCEEEEEECCCCCCch--HHHHHHH
Confidence 3445677899999999998743111222 22222211 11 113899999999998542 1221122
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.....+..+. ....++.+||+++.|+++|++.|.+..
T Consensus 316 ~~~l~~~l~~-~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 316 VEKLSKELYS-PIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HHHHHHHHCS-CEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 2122232210 113578999999999999998886544
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=69.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|+|+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999854
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00039 Score=61.00 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999853
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00032 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|||||||+|.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368889999999999999999643
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00086 Score=58.73 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00064 Score=58.87 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 678899999999999999984
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00062 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00036 Score=60.51 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.-++.++|.+|||||||+|.+.+... ....+..|.+...+.+. .....++||||..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~---------------~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~ 73 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV---------------VTTKPTIGFNVETLSYK---NLKLNVWDLGGQT 73 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE---------------EEECSSTTCCEEEEEET---TEEEEEEEEC---
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc---------------CccCCcCccceEEEEEC---CEEEEEEECCCCH
Confidence 34678899999999999999984210 11122233333333331 2346789999975
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00022 Score=66.03 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=22.7
Q ss_pred CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
|...+++.+ ++....|.++. +|+||||||||+++|++.+
T Consensus 10 ~~~~~l~~i-sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 10 GVDLGTENL-YFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceeecce-eccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567777 67777777655 9999999999999999865
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=66.45 Aligned_cols=96 Identities=20% Similarity=0.141 Sum_probs=53.5
Q ss_pred HHHHhhhcCCCc-EEEEEEeCCCCCCCch-HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHH
Q 015085 187 GRKLMSASGARS-VVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEH 264 (413)
Q Consensus 187 ~~~~~~~~~~~d-lVl~VvD~~d~~~s~~-~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~ 264 (413)
...+...+..++ +|++|+|+.+.....+ ..+.+.+.. .+ .|+++|+||+|+...... ..+
T Consensus 152 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----------~~-----~~~i~V~NK~Dl~~~~~~---~~~ 213 (299)
T 2aka_B 152 RDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----------QG-----QRTIGVITKLDLMDEGTD---ARD 213 (299)
T ss_dssp HHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----------TC-----SSEEEEEECGGGSCTTCC---CHH
T ss_pred HHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----------CC-----CeEEEEEEccccCCCCch---HHH
Confidence 344445555555 5558999976432222 123333221 12 389999999999865321 122
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+++....... .+...++.+||+++.|++++++.|.+
T Consensus 214 ~~~~~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 214 VLENKLLPLR-RGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHTTCSSCCT-TCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHhCCcCcCC-CCcEEEECCChhhccccccHHHHHHH
Confidence 2221000000 01235778999999999999888743
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=59.80 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+|.|++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0005 Score=59.90 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=35.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~ 379 (413)
.++.++|..|||||||+|.|.+... ....+..|++...+.+. .....++||||..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~t~~~~~~~~~~~---~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV---------------VHTSPTIGSNVEEIVIN---NTRFLMWDIGGQE 76 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC---------------EEEECCSSSSCEEEEET---TEEEEEEEESSSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---------------CccCCcCceeeEEEEEC---CEEEEEEECCCCH
Confidence 3688899999999999999995321 11122334443333331 2346789999974
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=70.79 Aligned_cols=56 Identities=29% Similarity=0.192 Sum_probs=36.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc--cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP--AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~--~~~~liDtpGl~ 379 (413)
+|.++|.+|||||||||+|++.. ..++..+.||++.......++ ....++||||+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~----------------~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i 217 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK----------------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 217 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC----------------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC----------------CccccCCccccCceEEEEEeCCCceEEEecCCCCc
Confidence 68889999999999999998532 122344555543321111122 357899999974
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00022 Score=65.22 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=18.0
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHH-ccC
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIA-KSV 330 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~-g~~ 330 (413)
++....|.+++ +|+||||||||+++|+ +..
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44455677665 9999999999999999 887
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00049 Score=72.29 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=45.7
Q ss_pred hhcCCCcEEEEEEeCCCCC-------CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH-
Q 015085 192 SASGARSVVLMVVDAADFD-------GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE- 263 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~-------~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~- 263 (413)
..+..+|++|+|||+.+.. .........++... +. +++|+|+||+|+... ....+.
T Consensus 274 ~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l----------gi----p~iIvviNKiDl~~~--~~~~~~~ 337 (592)
T 3mca_A 274 AGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL----------GI----SEIVVSVNKLDLMSW--SEDRFQE 337 (592)
T ss_dssp C-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS----------SC----CCEEEEEECGGGGTT--CHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc----------CC----CeEEEEEeccccccc--cHHHHHH
Confidence 3455789999999998643 22223333332221 32 249999999999753 223332
Q ss_pred --HHHHHHH-HHcCCC-ccceEEEeEEEeecCcc
Q 015085 264 --HWVRQRA-REDGIS-KITKLHFVSAVKNWGLK 293 (413)
Q Consensus 264 --~~~~~~~-~~~g~~-~~~~V~~vSa~~~~Gi~ 293 (413)
..+..++ +..|.. ....++.+||++|.|+.
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2233333 333431 11268999999999997
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00025 Score=75.86 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..-.+.++|..|+|||||+|+|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34467889999999999999999754
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00072 Score=57.57 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999996
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00059 Score=60.32 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3678899999999999999995
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00014 Score=68.22 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=53.6
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+.++. ....++.... ..+ .|+++|+||+|+............+ .+..|
T Consensus 82 ~~~d~ii~V~D~t~~~-----~~~~~~~~l~-------~~~-----~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg 140 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-----QSLYLLLEIL-------EME-----KKVILAMTAIDEAKKTGMKIDRYEL----QKHLG 140 (258)
T ss_dssp SCCSEEEEEEETTSCH-----HHHHHHHHHH-------TTT-----CCEEEEEECHHHHHHTTCCBCHHHH----HHHHC
T ss_pred cCCCEEEEEeCCCchh-----hHHHHHHHHH-------hcC-----CCEEEEEECcCCCCccchHHHHHHH----HHHcC
Confidence 5789999999998742 1112221110 013 3899999999986431111112333 33344
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|+++|++.+.+..
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 141 ----IPVVFTSSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp ----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CCEEEEEeeCCcCHHHHHHHHHHHh
Confidence 3689999999999999999886654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00063 Score=71.40 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=56.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC-------------
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS------------- 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~------------- 258 (413)
+.+..+|.+++|+|+.+..........+++.. .+. |+++|+||+|+.+....
T Consensus 89 r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~----------~~v-----PiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 89 RGGALADLAILIVDINEGFKPQTQEALNILRM----------YRT-----PFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH----------TTC-----CEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHHhhCCEEEEEEECCCCccHhHHHHHHHHHH----------cCC-----eEEEEecccccccccccccCCchHHHHHHh
Confidence 34567899999999998543222222233221 133 89999999999753210
Q ss_pred hHHH----HHHHH---HHHHHcCCC-----------ccceEEEeEEEeecCcchhccchhhh
Q 015085 259 PTRF----EHWVR---QRAREDGIS-----------KITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l----~~~~~---~~~~~~g~~-----------~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...+ .+.+. ..+...++. ....++.+||++|.|+++|++.|..+
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0111 11111 112222221 22368999999999999998888643
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00063 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g 328 (413)
..++.++|..|||||||+|.|.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34678899999999999999994
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00044 Score=70.37 Aligned_cols=97 Identities=6% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCC--ch--HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH---H
Q 015085 189 KLMSASGARSVVLMVVDAADFDGS--FP--RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT---R 261 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s--~~--~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~---~ 261 (413)
.....+..+|++|+|+|+.+.... +. ....+.+... ...+. +++++|+||+|+... ..+ .
T Consensus 101 ~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-------~~~~v----~~iivviNK~Dl~~~--~~~~~~~ 167 (458)
T 1f60_A 101 NMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-------FTLGV----RQLIVAVNKMDSVKW--DESRFQE 167 (458)
T ss_dssp HHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-------HHTTC----CEEEEEEECGGGGTT--CHHHHHH
T ss_pred HHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-------HHcCC----CeEEEEEEccccccC--CHHHHHH
Confidence 344567889999999999863210 00 0111111110 00122 259999999999742 122 2
Q ss_pred HHHHHHHHHHHcCCCc-cceEEEeEEEeecCcchhccc
Q 015085 262 FEHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLIDD 298 (413)
Q Consensus 262 l~~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll~~ 298 (413)
+.+.++.+++..+... ...++.+||++|.|+.++...
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~ 205 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTN 205 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSS
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCcCccccccc
Confidence 3333344445555311 136899999999999877654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00077 Score=59.66 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999853
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00064 Score=59.74 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.++.++|..|||||||++.|++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36788999999999999999853
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=66.66 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=36.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~ 379 (413)
++.++|.+|||||||+|.+++.... ..+..+++|++.......+ .-...++||||..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~~~---------------~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNYSA---------------FDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCCCT---------------GGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC---------------ccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 5788999999999999999854211 1223456666543322111 2246789999975
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00075 Score=59.02 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g 328 (413)
.-++.++|.+|||||||+|.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34688899999999999999963
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00021 Score=78.45 Aligned_cols=97 Identities=15% Similarity=0.200 Sum_probs=52.2
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCC-CCCcccccccccccccCCCCCeeeeEeecccccccccc
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR-GGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~-G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~l 372 (413)
+.+.+ ++....|++++ +|+||+||||||+++.+...... | ..+|..... +.+ . ..+
T Consensus 662 V~ndv-sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------------~~vpa~~~~-i~~---~---d~i 719 (918)
T 3thx_B 662 VPNNT-DLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------------SYVPAEEAT-IGI---V---DGI 719 (918)
T ss_dssp CCEEE-EECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------------CCBSSSEEE-EEC---C---SEE
T ss_pred ecccc-cccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------------ccccchhhh-hhH---H---HHH
Confidence 33444 45555677666 99999999999999875321100 1 111211111 111 1 123
Q ss_pred ccccccc-CCCCCCCCCCHHHHHHHHHhhhh-cCCccccCCCC
Q 015085 373 FDTPGLL-HPNQITTRLTREEQKLVNINKEL-KPRTYRIKVSL 413 (413)
Q Consensus 373 iDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l-~~~~~~l~~~~ 413 (413)
+...|+. ...+..+.+|+|+++++.+.+++ .+..+.||+|+
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~ 762 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELG 762 (918)
T ss_dssp EEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTT
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 3333433 22345677889999998888765 67778888774
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00053 Score=58.51 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|.+|||||||+|.|.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57789999999999999998543
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00043 Score=60.86 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999963
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=73.57 Aligned_cols=99 Identities=16% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCc-EEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPR-VVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~-vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.....+..+|.+|+|||+.+.......+...++... +. | +|+|+||+|+.......+.+..-++
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l----------gI-----P~IIVVINKiDLv~d~e~le~i~eEi~ 439 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV----------GV-----PYIIVFLNKCDMVDDEELLELVEMEVR 439 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH----------TC-----SCEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc----------CC-----CeEEEEEeecccccchhhHHHHHHHHH
Confidence 344567889999999999986544333333333221 33 5 8999999999752100111222333
Q ss_pred HHHHHcCCC-ccceEEEeEEEee--------cCcchhccchhhh
Q 015085 268 QRAREDGIS-KITKLHFVSAVKN--------WGLKSLIDDVVDL 302 (413)
Q Consensus 268 ~~~~~~g~~-~~~~V~~vSa~~~--------~Gi~~Ll~~I~~l 302 (413)
.+++..+.. ....++.+||++| .|+.+|++.|.+.
T Consensus 440 elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 440 ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 445555431 1246899999998 3567787777553
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00081 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|.+|||||||+|.+.+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46788999999999999999853
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=60.53 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHcc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~ 329 (413)
.+|.+++ +|+||||||||+++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3455544 999999999999999987
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00077 Score=58.67 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999963
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0005 Score=62.25 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+++++|..|||||||++.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00081 Score=58.77 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6888999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00078 Score=57.13 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 477899999999999999985
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=59.24 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|..+.. ++ ..+..+.... ...... ...|+++|+||+||... ....+..+.|. .
T Consensus 108 ~~~~a~~~ilVydvt~~~-sf-~~~~~~~~~l-----~~~~~~---~~~piilVgNK~DL~~~r~v~~~e~~~~a----~ 173 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRA-SF-EKASELRIQL-----RRARQT---EDIPIILVGNKSDLVRCREVSVSEGRACA----V 173 (211)
T ss_dssp CCCCCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HTSGGG---TTSCEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HHhhCCEEEEEEECCCHH-HH-HHHHHHHHHH-----HHHhCC---CCCcEEEEEEChHHhcCceEeHHHHHHHH----H
Confidence 345689999999988632 22 2222222111 000000 11389999999999743 23333333332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|.|++++++.|.+.
T Consensus 174 ~~~----~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 174 VFD----CKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp HHT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 233 357889999999999999887543
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00053 Score=64.62 Aligned_cols=84 Identities=11% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCcEEEEEEeCCC-CCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH---HHHHHH
Q 015085 196 ARSVVLMVVDAAD-FDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VRQRAR 271 (413)
Q Consensus 196 ~~dlVl~VvD~~d-~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~---~~~~~~ 271 (413)
++|++++++|... .....+..+.+.+.. + .|+++|+||+|++.. ..+..+ +.+.+.
T Consensus 115 r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----------~-----~pvi~V~nK~D~~~~----~e~~~~~~~i~~~l~ 174 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----------K-----VNIIPLIAKADTLTP----EECQQFKKQIMKEIQ 174 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHHHHHHHHHTT-----------T-----SCEEEEESSGGGSCH----HHHHHHHHHHHHHHH
T ss_pred ceeEEEEEecCCCCCCCHHHHHHHHHHhc-----------c-----CCEEEEEeccCCCCH----HHHHHHHHHHHHHHH
Confidence 3568888887654 222233344443321 2 389999999999743 333332 233333
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ..++.+|+.++.|+.++.+.|.+..
T Consensus 175 ~~~----i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 175 EHK----IKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HTT----CCCCCC-----------CHHHHHTC
T ss_pred HcC----CeEEcCCCCCChhHHHHHHHHhcCC
Confidence 444 2467789999999999998886543
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00024 Score=67.90 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=57.1
Q ss_pred hhHHHHHHHhhhcCCCcEEEEEEeCCCCC-C-CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh
Q 015085 182 FDHTVGRKLMSASGARSVVLMVVDAADFD-G-SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (413)
Q Consensus 182 ~~~~l~~~~~~~~~~~dlVl~VvD~~d~~-~-s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~ 259 (413)
+.+.+...+...+..+|++++|+|+.+.. . .....+.+++... + .|+++|+||+|+......
T Consensus 153 ~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~----------~-----~~~i~v~NK~Dl~~~~~~- 216 (315)
T 1jwy_B 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE----------G-----KRTIGVITKLDLMDKGTD- 216 (315)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS----------C-----SSEEEEEECTTSSCSSCC-
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC----------C-----CcEEEEEcCcccCCcchH-
Confidence 33445566777788899999999974322 2 2223455544321 2 389999999999865321
Q ss_pred HHHHHHHHHHHHHcCCCccceEEEeEEEe---ecCcchhccchhhhc
Q 015085 260 TRFEHWVRQRAREDGISKITKLHFVSAVK---NWGLKSLIDDVVDLA 303 (413)
Q Consensus 260 ~~l~~~~~~~~~~~g~~~~~~V~~vSa~~---~~Gi~~Ll~~I~~l~ 303 (413)
..++++......+ ..+..+..+|+.. +.|+.++++.+..+.
T Consensus 217 --~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 217 --AMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp --CHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred --HHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 1222221100000 1223445556655 566677776665544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00011 Score=64.45 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=51.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHH----HHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE----HWVRQRAR 271 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~----~~~~~~~~ 271 (413)
.++++++|+|+++...++ ..+..++..... ...+ .|+++|+||+|+... ..+. .....+.+
T Consensus 79 ~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~-----~~~~-----~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~ 143 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEV-DAMKPWLFNIKA-----RASS-----SPVILVGTHLDVSDE----KQRKACMSKITKELLN 143 (184)
T ss_dssp HSEEEEEEEEGGGCHHHH-HTHHHHHHHHHH-----HCTT-----CEEEEEEECGGGCCH----HHHHHHHHHHHHHTTT
T ss_pred CCcEEEEEEeCCcchhHH-HHHHHHHHHHHh-----hCCC-----CcEEEEEECCCcccc----hhhHHHHHHHHHHHHH
Confidence 478999999998742222 233344332110 0012 389999999999642 2221 11222222
Q ss_pred HcCCCccceEEEeEEEeec-Ccchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNW-GLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~-Gi~~Ll~~I~~l 302 (413)
..+......++.+||+++. ++++|++.|.+.
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 144 KRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred hcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 2232111247889999996 888888877544
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00096 Score=58.51 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6788999999999999999853
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00098 Score=59.11 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6788999999999999999963
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00043 Score=61.49 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5788999999999999999753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00045 Score=71.22 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=27.5
Q ss_pred cCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 305 ~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..|. +.++|+||||||||+++|+++.++..|.+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii 291 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV 291 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence 4444 66699999999999999999998887743
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0003 Score=62.94 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=24.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+.++|+||+|||||++.|+|.+. .+| +.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~ 31 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VP 31 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EE
Confidence 356699999999999999999987 777 54
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00019 Score=67.95 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
..+|+|++|+|+++.. ....+..... ..+. |+++|+||+|+............+. +..|
T Consensus 79 ~~~d~vi~V~D~t~~e-----~~~~~~~~l~-------~~~~-----p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg 137 (272)
T 3b1v_A 79 QRADSILNVVDATNLE-----RNLYLTTQLI-------ETGI-----PVTIALNMIDVLDGQGKKINVDKLS----YHLG 137 (272)
T ss_dssp TCCSEEEEEEEGGGHH-----HHHHHHHHHH-------HTCS-----CEEEEEECHHHHHHTTCCCCHHHHH----HHHT
T ss_pred CCCCEEEEEecCCchH-----hHHHHHHHHH-------hcCC-----CEEEEEEChhhCCcCCcHHHHHHHH----HHcC
Confidence 4689999999998631 2222221110 0133 8999999999864311111233332 2234
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhc
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..++.+||+++.|++++++.|.+..
T Consensus 138 ----~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ----VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ----SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ----CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3689999999999999999886644
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.001 Score=59.41 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999953
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00046 Score=60.73 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.1
Q ss_pred CcEE-EEcCCCCcHHHHHHHHHccCc
Q 015085 307 GNVW-AIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 307 g~~~-~vG~ng~GKSTLin~L~g~~~ 331 (413)
|+++ ++|+||||||||++.|++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444 499999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00095 Score=57.88 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00031 Score=68.87 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
.+++.+ +...+|+++. +|+||+|||||+++|+|...++.|.
T Consensus 60 ~ald~l--l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~ 101 (347)
T 2obl_A 60 RAIDGL--LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIV 101 (347)
T ss_dssp HHHHHH--SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEE
T ss_pred EEEEee--eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEE
Confidence 455555 3445566555 9999999999999999999887764
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00031 Score=60.57 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999953
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00041 Score=66.98 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=58.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccccc--CCCCCeeeeEeecc--cccc------ccccc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPGTTLGIVRVEG--VLPA------QAKLF 373 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s--~~pgtT~~~i~~~~--~l~~------~~~li 373 (413)
.+|.+++ +|+||||||||+++|.|++.+..|. ..+..+... .++.+.++.+.... .... ...++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4556555 9999999999999999999876552 011111111 12222222211100 0000 01222
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 374 DTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 374 DtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+..+-...+.....||+|++|++.+++++ .++.+.+++|+
T Consensus 163 ~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~ 204 (312)
T 3aez_A 163 TSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLN 204 (312)
T ss_dssp HHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTT
T ss_pred HHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCcc
Confidence 22221122355678999999999998887 46777777663
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=58.33 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 678899999999999999986
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00076 Score=59.73 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|++.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36888999999999999999864
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0011 Score=58.18 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.|.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999999999999954
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0016 Score=59.79 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 184 HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 184 ~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
+.+.+.+......++++|+|+|+.++.. .+..+.+.+....... .. .|+++|+||+|++..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-----~~-----~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-----AR-----SFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-----HG-----GGEEEEEECGGGC--
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-----cc-----ceEEEEEeCCccCCc
Confidence 3455555566678899999999986543 2223333322111110 01 289999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00021 Score=62.44 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=53.4
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~ 275 (413)
.++++++|+|+.++ ..+..++.... ..+ .|+++|+||+|+..........+.+. +..+
T Consensus 85 ~~~~~i~v~d~~~~-----~~~~~~~~~~~-------~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATAL-----ERNLYLTLQLM-------EMG-----ANLLLALNKMDLAKSLGIEIDVDKLE----KILG- 142 (188)
T ss_dssp CCSEEEEEEEGGGH-----HHHHHHHHHHH-------TTT-----CCEEEEEECHHHHHHTTCCCCHHHHH----HHHT-
T ss_pred CCCEEEEEecchhH-----HHHHHHHHHHH-------hcC-----CCEEEEEEhhhccccccchHHHHHHH----HHhC-
Confidence 57999999999763 22223322210 012 38999999999864311112233332 2233
Q ss_pred CccceEEEeEEEeecCcchhccchhhhccc
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
..++.+||+++.|++++++.+.+....
T Consensus 143 ---~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 143 ---VKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp ---SCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred ---CCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 368899999999999999988665544
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00084 Score=73.88 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.8
Q ss_pred hhcccCCcEEE-EcCCCCcHHHHHHHHH
Q 015085 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIA 327 (413)
Q Consensus 301 ~l~~~~g~~~~-vG~ng~GKSTLin~L~ 327 (413)
++....|++++ +|+||+||||||+++.
T Consensus 656 sl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 656 YFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 45555667766 9999999999999983
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00033 Score=71.58 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=29.0
Q ss_pred ccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 304 ~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
..+|.+++ +|+||||||||++.|+|++.+..|.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~ 325 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM 325 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence 45566665 999999999999999999988777644
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0018 Score=65.87 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=52.1
Q ss_pred hhhcCCCcEEEEEEeCCCCCC-------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH-
Q 015085 191 MSASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF- 262 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~-------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l- 262 (413)
...+..+|++|+|||+.+..+ ....+...++.. .+. +++++|+||+|+.......+.+
T Consensus 139 ~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----------~~v----p~iivviNK~Dl~~~~~~~~~~~ 204 (467)
T 1r5b_A 139 INGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------QGI----NHLVVVINKMDEPSVQWSEERYK 204 (467)
T ss_dssp ---TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------TTC----SSEEEEEECTTSTTCSSCHHHHH
T ss_pred HhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----------cCC----CEEEEEEECccCCCccccHHHHH
Confidence 345678999999999987531 112222222211 132 2399999999996432222222
Q ss_pred --HHHHHHHHHHc-CCC--ccceEEEeEEEeecCcchhcc
Q 015085 263 --EHWVRQRARED-GIS--KITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 263 --~~~~~~~~~~~-g~~--~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
..-++.+++.. |+. .-..++.+||++|.|+.++++
T Consensus 205 ~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 205 ECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 22233344444 432 023588999999999987653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00097 Score=57.70 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999853
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00028 Score=73.05 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=52.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccccccccccccccc-CCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL-HPN 382 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~-~~~ 382 (413)
.+|++++ +|+||+|||||++.|++...+. |.. +-.+.....+..-.... ....+. ...+. ..|+. ..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~------vi~~~~ee~~~~l~~~~-~~~g~~-~~~~~-~~g~~~~~~ 348 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-KER------AILFAYEESRAQLLRNA-YSWGMD-FEEME-RQNLLKIVC 348 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCC------EEEEESSSCHHHHHHHH-HTTSCC-HHHHH-HTTSEEECC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCC------EEEEEEeCCHHHHHHHH-HHcCCC-HHHHH-hCCCEEEEE
Confidence 4567666 9999999999999999987653 520 00000000000000000 000000 00000 12222 223
Q ss_pred CCCCCCCHHHHHHHHHhhhh--cCCccccC
Q 015085 383 QITTRLTREEQKLVNINKEL--KPRTYRIK 410 (413)
Q Consensus 383 ~~~~~LS~ge~q~v~i~r~l--~~~~~~l~ 410 (413)
..+..||+|++|++++++++ .|+.+.||
T Consensus 349 ~~p~~LS~g~~q~~~~a~~l~~~p~llilD 378 (525)
T 1tf7_A 349 AYPESAGLEDHLQIIKSEINDFKPARIAID 378 (525)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred eccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 45678999999999999997 57777777
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00026 Score=65.90 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=59.2
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEE-cccCCCCCCChHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVT-KIDLLPSSLSPTRFEH 264 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViN-K~DLl~~~~~~~~l~~ 264 (413)
+.+.+...+..+|++|+|+|+.++ ......+.+++....... .+ .++++|+| |+|+.... +..
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~-~~~~~~~~~~l~~~~~~~-----~~-----~~~i~vv~nK~Dl~~~~-----~~~ 158 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRY-TSQDQQAAQRVKEIFGED-----AM-----GHTIVLFTHKEDLNGGS-----LMD 158 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCC-CHHHHHHHHHHHHHHCGG-----GG-----GGEEEEEECGGGGTTCC-----HHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCC-CHHHHHHHHHHHHHhCch-----hh-----ccEEEEEEcccccCCcc-----HHH
Confidence 345555677889999999999863 222333444443221000 01 26788888 99997431 222
Q ss_pred HH--------HHHHHHcCCC-c-cceEEEeEEEeecCcchhccchhhhccc
Q 015085 265 WV--------RQRAREDGIS-K-ITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 265 ~~--------~~~~~~~g~~-~-~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
|+ +..++..+.. . +.. +.+||+++.|++++++.|.++...
T Consensus 159 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 159 YMHDSDNKALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHCCCHHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 22 1233333311 0 112 568999999999998888665543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0004 Score=67.78 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=27.4
Q ss_pred cchhccchhhhcccCCc-EEEEcCCCCcHHHHHHHHHccCcCC
Q 015085 292 LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG 333 (413)
Q Consensus 292 i~~Ll~~I~~l~~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~ 333 (413)
...++..+ .+...++. +.++|++|+|||||+|.|++...+.
T Consensus 42 ~~~~~~~l-~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 42 STQLLDAI-MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHHHHHH-GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34445444 33334444 4459999999999999999766443
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3678899999999999999985
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00043 Score=67.98 Aligned_cols=87 Identities=20% Similarity=0.050 Sum_probs=51.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH---HHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VRQRA 270 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~---~~~~~ 270 (413)
+..+|+|++|+|+...... ..+...+. + .|+++|+||+|+.+. ...... +...+
T Consensus 190 ~~~aD~vl~V~d~~~~~~~--~~l~~~~~------------~-----~p~ivVlNK~Dl~~~----~~~~~~~~~l~~~l 246 (355)
T 3p32_A 190 ANMVDTFVLLTLARTGDQL--QGIKKGVL------------E-----LADIVVVNKADGEHH----KEARLAARELSAAI 246 (355)
T ss_dssp HTTCSEEEEEEESSTTCTT--TTCCTTSG------------G-----GCSEEEEECCCGGGH----HHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEECCCCCccH--HHHHHhHh------------h-----cCCEEEEECCCCcCh----hHHHHHHHHHHHHH
Confidence 4779999999998653221 11111111 1 278999999998642 222222 22222
Q ss_pred HHcCC--Cc-cceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGI--SK-ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~--~~-~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...+. .. ...|+.+||+++.|+++|++.|.++.
T Consensus 247 ~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 247 RLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 21110 00 13689999999999999999986654
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=71.43 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=48.6
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHccCc-CCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCCCCC
Q 015085 307 GNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQI 384 (413)
Q Consensus 307 g~~~~-vG~ng~GKSTLin~L~g~~~-~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~~~~ 384 (413)
|++++ +|+||+|||||+++|+|... +..|.+. |... ..+.+ .+ .++...|+. +.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--------------pa~~-~~i~~---v~---~i~~~~~~~--d~l 632 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV--------------PAEE-AHLPL---FD---GIYTRIGAS--DDL 632 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--------------SSSE-EEECC---CS---EEEEECCC------
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee--------------ehhc-cceee---HH---HhhccCCHH--HHH
Confidence 56555 99999999999999998763 4445211 1111 01111 11 122222222 234
Q ss_pred CCCCCHHHHHHHHHhhhh----cCCccccCCC
Q 015085 385 TTRLTREEQKLVNINKEL----KPRTYRIKVS 412 (413)
Q Consensus 385 ~~~LS~ge~q~v~i~r~l----~~~~~~l~~~ 412 (413)
...+|.++.+++.+++.+ .+..+.||+|
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 556788988888888887 6778888877
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00022 Score=61.97 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=9.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.|.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999984
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00066 Score=60.48 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5788999999999999999853
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0012 Score=58.91 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578899999999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00053 Score=68.93 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=27.7
Q ss_pred cCCc-EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 305 ~~g~-~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
..+. +.++|+||+|||||+++|++.+.+..|.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~ 199 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL 199 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence 3445 455999999999999999999988877643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00039 Score=67.64 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.6
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
.+|++++ +|+||||||||++.|++.+.+..|.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~ 161 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence 4566665 999999999999999999988877644
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00055 Score=60.17 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6888999999999999999963
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0013 Score=57.88 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6788999999999999999863
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0004 Score=62.66 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=36.2
Q ss_pred cEEEEcCCCCcHHHHHHHHH-ccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIA-KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~-g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|.++ +... ....+..|+|.....+..... -...++||||...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE---------------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT---------------CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---------------CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 57889999999999999944 3211 112344566665544322111 1367899999653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0001 Score=76.42 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=55.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCC--hHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS--PTRFEHWVRQR 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~--~~~l~~~~~~~ 269 (413)
..+..+|++++|+|+.+..+.......+.+.. .+ .|+++|+||+|+...... ...+..+. ..
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~----------~~-----vPiIVViNKiDl~~~~~~~v~~~l~~~~-~~ 134 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKD----------AH-----VPIVLAINKCDKAEADPEKVKKELLAYD-VV 134 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT----------TT-----CCEEECCBSGGGTTTSCCSSSSHHHHTT-SC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHH----------cC-----CcEEEEEecccccccchHHHHHHHHhhh-hh
Confidence 35567899999999998554333333332221 13 289999999999753211 11121110 00
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
...++ ....++.+||++|.|+++|++.|..+
T Consensus 135 ~e~~~--~~~~iv~vSAktG~GI~eLle~I~~l 165 (537)
T 3izy_P 135 CEDYG--GDVQAVHVSALTGENMMALAEATIAL 165 (537)
T ss_dssp CCCSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred HHhcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence 00111 12368889999999999998888554
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0012 Score=57.85 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6788999999999999999853
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.001 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36888999999999999999854
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0011 Score=59.13 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||+|.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36888999999999999999963
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00063 Score=61.00 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999953
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=59.65 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.|.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 678899999999999999985
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00084 Score=60.22 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||+|.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678899999999999999984
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00077 Score=59.95 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.|.++ ++|++||||||+++.|.+...+..|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45554 4999999999999999998754433
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0007 Score=61.16 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
..|++++ +|+||+|||||++.|++...+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4567666 999999999999999986544
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00054 Score=69.28 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=33.1
Q ss_pred chhccchhhhcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCCC
Q 015085 293 KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~~ 337 (413)
..+++.+ +...+|+++ ++|+||+|||||+++|+|+..++.|.+
T Consensus 145 ~~vld~v--l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 145 VRAINAL--LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp CHHHHHH--SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred ceEEeee--EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 3456666 444556655 599999999999999999998887754
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00087 Score=66.25 Aligned_cols=92 Identities=5% Similarity=0.002 Sum_probs=52.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcE-EEEEE-cccCCCCCCChHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRV-VLVVT-KIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~v-ilViN-K~DLl~~~~~~~~l~~~~~~~ 269 (413)
..+..+|.+++|+| .+.......+...++... +. |. ++|+| |+|+ ... ..+.+.+-++++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~----------~i-----~~~ivvvNNK~Dl-~~~-~~~~~~~~i~~~ 140 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLL----------GF-----KHGIIALTRSDST-HMH-AIDELKAKLKVI 140 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT----------TC-----CEEEEEECCGGGS-CHH-HHHHHHHHHHHH
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc----------CC-----CeEEEEEEeccCC-CHH-HHHHHHHHHHHH
Confidence 34567899999999 653322222222222211 32 55 99999 9999 421 001111222222
Q ss_pred HHHcCCCccceEEE--eEEEe---ecCcchhccchhhh
Q 015085 270 AREDGISKITKLHF--VSAVK---NWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~--vSa~~---~~Gi~~Ll~~I~~l 302 (413)
++..+. ....++. +||++ +.|+++|++.|.++
T Consensus 141 l~~~~~-~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 141 TSGTVL-QDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp TTTSTT-TTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHhcCC-CceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 222221 1247899 99999 99999888877544
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00092 Score=57.73 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|+|||||++.+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46888999999999999999853
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00078 Score=64.74 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=26.8
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCc--CCCCCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVD--AGRGGD 337 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~--~~~G~~ 337 (413)
.++.+++ +|+||||||||+++|.+++. +.+|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 3455554 99999999999999999887 777764
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=67.90 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|..|+|||||||.|+|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=58.42 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999964
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0009 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+.++|.+|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 367889999999999999999643
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00059 Score=67.27 Aligned_cols=103 Identities=16% Similarity=0.245 Sum_probs=61.4
Q ss_pred hhhcCCCcEEEEEEeCCCCCCC--------chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------
Q 015085 191 MSASGARSVVLMVVDAADFDGS--------FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------- 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s--------~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------- 255 (413)
....+.++.||+|+|+++++.. .......++...... .+-.+ .|+|+|+||+||...
T Consensus 219 ~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~---~~~~~-----~piILv~NK~DL~~~ki~~~~l 290 (362)
T 1zcb_A 219 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN---RVFSN-----VSIILFLNKTDLLEEKVQVVSI 290 (362)
T ss_dssp TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC---GGGTT-----SEEEEEEECHHHHHHHTTTCCG
T ss_pred HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc---hhhCC-----CCEEEEEEChhhhhhhccccch
Confidence 3456788999999999986421 122233333221110 01112 389999999998621
Q ss_pred ----------CCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhh
Q 015085 256 ----------SLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 256 ----------~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
....+....|+...+..... .....++.+||+++.|++.+++.+.+
T Consensus 291 ~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 291 KDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp GGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 13445666666544332211 11235788999999999998887754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00067 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~ 334 (413)
.+.++|+||+|||||+++|+|++.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 455599999999999999999998887
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36888999999999999999963
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=58.09 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
..+-..++|+||+|||||+++|.+.+.+..|
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 4454556999999999999999987765544
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00021 Score=67.29 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=53.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...+|+|++|+|+.++. .. ..+.... ...+ ..|+++|+||+|+............+ .+..
T Consensus 79 ~~~~d~vi~v~D~~~~~----~~-~~~~~~~-------~~~~----~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~l 138 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM----RN-LFLTLEL-------FEME----VKNIILVLNKFDLLKKKGAKIDIKKM----RKEL 138 (271)
T ss_dssp TTCCSEEEEEEEGGGHH----HH-HHHHHHH-------HHTT----CCSEEEEEECHHHHHHHTCCCCHHHH----HHHH
T ss_pred ccCCcEEEEEecCCcch----hh-HHHHHHH-------HhcC----CCCEEEEEEChhcCcccccHHHHHHH----HHHc
Confidence 36799999999998742 11 1111111 0112 03899999999986431111112222 2233
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
| ..++.+||+++.|++++++.+.....
T Consensus 139 g----~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 139 G----VPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp S----SCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred C----CcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4 36899999999999999998866543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0028 Score=55.93 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=20.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-++.++|..|||||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368889999999999999998643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00079 Score=60.35 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCcE-EEEcCCCCcHHHHHHHHHccCc
Q 015085 306 RGNV-WAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 306 ~g~~-~~vG~ng~GKSTLin~L~g~~~ 331 (413)
++.+ .++|+||||||||+++|.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3454 4499999999999999998764
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0013 Score=66.42 Aligned_cols=68 Identities=26% Similarity=0.223 Sum_probs=40.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccc-------------------cccccccccCCCCCeeeeEeecccc-c
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-------------------NIVSHLTEAPVPGTTLGIVRVEGVL-P 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~-------------------~~v~~~t~s~~pgtT~~~i~~~~~l-~ 367 (413)
++.++|..|+|||||++.|++.. |.+.... ...........+|+|++.....+.. .
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~~----~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYLT----GMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc----CCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 57789999999999999997543 2211100 0011122223478888764433222 2
Q ss_pred cccccccccccc
Q 015085 368 AQAKLFDTPGLL 379 (413)
Q Consensus 368 ~~~~liDtpGl~ 379 (413)
....++||||..
T Consensus 95 ~~~~iiDTPGh~ 106 (439)
T 3j2k_7 95 KHFTILDAPGHK 106 (439)
T ss_pred eEEEEEECCChH
Confidence 357899999964
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00057 Score=67.24 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
++-+.++|+||+|||||+++|++.+.+..|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~ 152 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCC
Confidence 344555999999999999999998877643
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=59.39 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccCcC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~~~ 332 (413)
+|.+++ +|+||||||||++.|++.+++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 456555 999999999999999988754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0019 Score=55.70 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678899999999999999986
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0022 Score=55.86 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00066 Score=67.14 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccCCc-EEEEcCCCCcHHHHHHHHHccCcCC-CCCC
Q 015085 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG-RGGD 337 (413)
Q Consensus 304 ~~~g~-~~~vG~ng~GKSTLin~L~g~~~~~-~G~~ 337 (413)
...|. +.++|+||+|||||+++|++.+.+. +|.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 34455 4559999999999999999998776 6654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00069 Score=62.58 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHH---ccCcCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGGD 337 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~---g~~~~~~G~~ 337 (413)
.+.++|+||||||||+++|+ |...++.|.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 35569999999999999999 8887766653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0015 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCcEE-EEcCCCCcHHHHHHHHHccCc
Q 015085 306 RGNVW-AIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 306 ~g~~~-~vG~ng~GKSTLin~L~g~~~ 331 (413)
+|.++ ++|++|||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35554 499999999999999998764
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00077 Score=70.79 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=26.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCC--------------CCCcc-cccccccccccCCCCCeeeeEeeccccc-cccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGR--------------GGDGE-EKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAK 371 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~--------------G~~~~-~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~ 371 (413)
++.++|..|+|||||++.|++...... |.... .............+|+|++.....+... ....
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~ 258 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYE 258 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEE
Confidence 477799999999999999975321000 00000 0000111112235788887654433222 3567
Q ss_pred cccccccc
Q 015085 372 LFDTPGLL 379 (413)
Q Consensus 372 liDtpGl~ 379 (413)
++||||..
T Consensus 259 iiDTPGh~ 266 (592)
T 3mca_A 259 IGDAPGHR 266 (592)
T ss_dssp CCEEESSS
T ss_pred EEECCChH
Confidence 99999964
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00039 Score=60.88 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
.++++|+||+|||||+++|++...+..|
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 4566999999999999999988755555
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0045 Score=55.30 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=32.8
Q ss_pred HHHhhhcCCCcEEEEEEeCC-CCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 188 RKLMSASGARSVVLMVVDAA-DFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~-d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
..+......++.+++|+|+. +. .++ ..+.+++.............+ .|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDP-KKL-TTTAEFLVDILSITESSCENG-----IDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCT-TCC-HHHHHHHHHHHHHHHHHSTTC-----CCEEEEEECTTSTTC
T ss_pred HHHHhccccCCEEEEEEECCCCh-HHH-HHHHHHHHHHHhcccccccCC-----CCEEEEEEchHhccc
Confidence 33333334579999999998 43 232 223333322111000000112 389999999999765
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00054 Score=60.60 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=4.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|||||||+|.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999854
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=67.93 Aligned_cols=68 Identities=24% Similarity=0.277 Sum_probs=37.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-------------------ccccccccccCCCCCeeeeEeecccc-c
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-------------------KNIVSHLTEAPVPGTTLGIVRVEGVL-P 367 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-------------------~~~v~~~t~s~~pgtT~~~i~~~~~l-~ 367 (413)
++.++|..|+|||||++.|++.. |.+... .......+....+|+|.+.....+.. .
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~~----~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYDL----NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHHT----TSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc----CCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 57789999999999999998653 211100 00112233344567777553332222 2
Q ss_pred cccccccccccc
Q 015085 368 AQAKLFDTPGLL 379 (413)
Q Consensus 368 ~~~~liDtpGl~ 379 (413)
....++||||..
T Consensus 111 ~~~~iiDTPG~~ 122 (483)
T 3p26_A 111 ANFTIVDAPGHR 122 (483)
T ss_dssp CEEEEECCCCCG
T ss_pred ceEEEEECCCcH
Confidence 256799999974
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00019 Score=63.66 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||+|.|++
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678899999999999999884
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0016 Score=57.54 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 4678899999999999999974
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0008 Score=60.24 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=24.0
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
..+.+++ +|++|+|||||++.|.+.+.+..|.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~ 52 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS 52 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence 3455444 9999999999999999876544443
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0003 Score=70.82 Aligned_cols=58 Identities=31% Similarity=0.340 Sum_probs=33.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc--ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP--AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~--~~~~liDtpGl~~ 380 (413)
++.++|..|+|||||+|.|++.. ...++..+|+|.+.......+. ....++||||...
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~---------------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN---------------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC---------------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 67889999999999999998532 1123455677766543322222 2568999999864
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00045 Score=70.97 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=54.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH---
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ--- 268 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~--- 268 (413)
..+..+|++++|+|+.+..+....+....+.. .+. |+++|+||+|+..... +.+...+..
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~----------~~v-----PiIVviNKiDl~~~~~--~~v~~~l~~~~~ 132 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA----------AQV-----PVVVAVNKIDKPEADP--DRVKNELSQYGI 132 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH----------TTC-----CEEEEEECSSSSTTCC--CCTTCCCCCCCC
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh----------cCc-----eEEEEEEeccccccCH--HHHHHHHHHhhh
Confidence 34667899999999987544333333332221 133 8999999999964311 111100000
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..+.++ ....++.+||++|.|+++|++.|..
T Consensus 133 ~~~~~~--~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 133 LPEEWG--GESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CTTCCS--SSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred hHHHhC--CCccEEEEeeeeccCcchhhhhhhh
Confidence 000111 1236899999999999999988753
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0039 Score=66.98 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEeEEEeecCcchhccchhhhc-----------ccCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLA-----------GKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~-----------~~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+...++..+.|+++++..+.++. ..-..+.++|..|+|||||||+|+|..
T Consensus 15 ~~~~~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 15 VPRGSHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp ----------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455666677666555443321 122378889999999999999999864
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0029 Score=58.44 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=56.6
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+...+.. ++|++|+|+....... .+...+..... .....++ |+++|+||+|+.... ....+.+|++
T Consensus 130 ~~~~~~~~~-~~iv~vvD~~~~~~~~--~~~~~~~~~~~---~~~~~~~-----p~~iv~NK~D~~~~~-~~~~~~~~l~ 197 (262)
T 1yrb_A 130 VRLMENLPY-PLVVYISDPEILKKPN--DYCFVRFFALL---IDLRLGA-----TTIPALNKVDLLSEE-EKERHRKYFE 197 (262)
T ss_dssp HHHHHTSSS-CEEEEEECGGGCCSHH--HHHHHHHHHHH---HHHHHTS-----CEEEEECCGGGCCHH-HHHHHHHHHH
T ss_pred HHHHHHHhh-ceEEeccchhhhcCHH--HHHHHHHHHHH---HhcccCC-----CeEEEEecccccccc-cHHHHHHHHh
Confidence 334455566 9999999987654321 11111100000 0011122 899999999997431 0112233321
Q ss_pred H------H------------------HHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 Q------R------------------AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~------~------------------~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. . ++..+ ....++.+||+++.|+++|++.|.+...
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 198 DIDYLTARLKLDPSMQGLMAYKMCSMMTEVL--PPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS--CCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccccchhHhHHHHHHHHhc--CcccceEEEecCcccHHHHHHHHHHHhc
Confidence 1 0 12222 1126789999999999999998865543
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.003 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999964
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00093 Score=65.63 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=63.4
Q ss_pred hhhcCCCcEEEEEEeCCCCCC--------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------
Q 015085 191 MSASGARSVVLMVVDAADFDG--------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------- 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~--------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------- 255 (413)
....+.++.||+|+|+++++. ........++...... .+-.+ .|++||+||+||...
T Consensus 211 ~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~---~~~~~-----~piiLv~NK~DL~~~ki~~~~l 282 (353)
T 1cip_A 211 IHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWFTD-----TSIILFLNKKDLFEEKIKKSPL 282 (353)
T ss_dssp GGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC---GGGTT-----SEEEEEEECHHHHHHHHTTSCG
T ss_pred HHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC---ccccC-----CcEEEEEECcCchhhhccccch
Confidence 356678999999999998642 1122333333322110 01112 389999999998521
Q ss_pred ---------CCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhhh
Q 015085 256 ---------SLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 256 ---------~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
....+....|+...+..... .....++.+||+++.|+.++++.+.+.
T Consensus 283 ~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~ 341 (353)
T 1cip_A 283 TICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 341 (353)
T ss_dssp GGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHH
Confidence 12445667776654433210 012357889999999999998887543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00065 Score=62.57 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccCcCCCCCCc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~~~~~G~~~ 338 (413)
+.++|+||+|||||+++|++.+.+++|.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 345899999999999999999999988754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0054 Score=54.39 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=55.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
....+.+++|+|+.+........+.+++... +. ++++|.||+|++.... .......++..+...
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~----------~~-----~~~~v~nK~D~~s~~~-~~~~~~~~~~~~~~~ 169 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS----------NI-----AVLVLLTKADKLASGA-RKAQLNMVREAVLAF 169 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TC-----CEEEEEECGGGSCHHH-HHHHHHHHHHHHGGG
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHc----------CC-----CeEEEEecccCCCchh-HHHHHHHHHHHHHhc
Confidence 3567889999999875432233344444321 22 7899999999975310 001012222333333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+ ....++.+||+++.|++++++.|.++.
T Consensus 170 ~--~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 170 N--GDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp C--SCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred C--CCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 2 123578899999999999999886654
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.003 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|||||||+|.|.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999998654
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00078 Score=70.97 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-++.++|..|+|||||+|.|++..
T Consensus 168 lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CEEEEECCSSSCHHHHHHHHHSCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHhc
Confidence 368889999999999999999653
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0036 Score=56.28 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
-++.++|..|||||||++.|.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36888999999999999999853
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0013 Score=62.46 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=30.5
Q ss_pred ccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCC
Q 015085 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 296 l~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
++.+ .....+|++++ +|+||+|||||++.|++...+..|
T Consensus 25 Ld~i-~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 25 INDK-TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp HHHH-HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHH-hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 4444 24456677766 999999999999999998877766
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=57.18 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 015085 309 VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g 328 (413)
++++|+||||||||++.|++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 34599999999999999987
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0086 Score=61.91 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=33.3
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
...+..+|.+|+|+|+.+........+.+.+.. .+ .|+++|+||+|+...
T Consensus 100 ~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~----------~~-----ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 100 YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL----------RD-----TPILTFMNKLDRDIR 149 (529)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT----------TT-----CCEEEEEECTTSCCS
T ss_pred HHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH----------cC-----CCEEEEEcCcCCccc
Confidence 345677999999999988643323333333221 12 389999999999754
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=64.20 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
|.++|+.++|||||||.|+|.
T Consensus 70 VsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 70 VSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhh
Confidence 444999999999999999986
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0021 Score=62.01 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccC--------cCCCCCCc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV--------DAGRGGDG 338 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~--------~~~~G~~~ 338 (413)
+.++|.+|||||||||.|++.. .++.|.+.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~ 44 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS 44 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCC
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccC
Confidence 3449999999999999999986 56777654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0018 Score=61.10 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=26.6
Q ss_pred hccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 295 LIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+++.+ .+...+| +.++|+||+|||||+++|++...
T Consensus 35 ~l~~~-~l~~~~G-vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 35 QFKAL-GLVTPAG-VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp HHHHT-TCCCCSE-EEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHHc-CCCCCCe-EEEECCCCCcHHHHHHHHHHHcC
Confidence 44444 4444555 77799999999999999998764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0019 Score=66.88 Aligned_cols=57 Identities=28% Similarity=0.331 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc--ccccccccccccc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLL 379 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l--~~~~~liDtpGl~ 379 (413)
..+.++|..|+|||||++.|.+.. ......+|+|.+.......+ .....++||||..
T Consensus 5 pkV~IvG~~~vGKTSLl~~L~~~~----------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLDKLRKTQ----------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CBCEEEESTTTTHHHHHHHHHHHH----------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 467889999999999999998532 11123455555443222222 2246789999964
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0076 Score=64.35 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=31.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
..+..+|.+|+|+|+.+........+.+.+.. .+. |+++|+||+|+...
T Consensus 96 ~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~----------~~~-----p~ivviNKiD~~~~ 144 (691)
T 1dar_A 96 RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK----------YKV-----PRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----------TTC-----CEEEEEECTTSTTC
T ss_pred HHHHHCCEEEEEEECCCCcchhhHHHHHHHHH----------cCC-----CEEEEEECCCcccC
Confidence 34455899999999987654322223222221 133 89999999999754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0015 Score=67.39 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=33.3
Q ss_pred hhccchhhh-cccCCcEEE-EcCCCCcHHHHHHH--HHccCcCCCCCCc
Q 015085 294 SLIDDVVDL-AGKRGNVWA-IGAQNAGKSTLLNA--IAKSVDAGRGGDG 338 (413)
Q Consensus 294 ~Ll~~I~~l-~~~~g~~~~-vG~ng~GKSTLin~--L~g~~~~~~G~~~ 338 (413)
..++.+ .+ ...+|++++ +|+||+|||||+++ +.|+.++++|.+.
T Consensus 26 ~~Ld~i-~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~ 73 (525)
T 1tf7_A 26 EGFDDI-SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 73 (525)
T ss_dssp TTHHHH-TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred hhHHHh-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 345555 45 456777776 99999999999999 6798887777543
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0016 Score=58.59 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=51.4
Q ss_pred CcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHcCC
Q 015085 197 RSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDGI 275 (413)
Q Consensus 197 ~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~g~ 275 (413)
++.+++|+|+..... ....+.... + .++++|+||+|+... ......+.++++. .+
T Consensus 130 ~~~~i~vvd~~~~~~----~~~~~~~~~----------~-----~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~----~~- 185 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD----VVEKHPEIF----------R-----VADLIVINKVALAEAVGADVEKMKADAKL----IN- 185 (221)
T ss_dssp CSEEEEEEEGGGCTT----HHHHCHHHH----------H-----TCSEEEEECGGGHHHHTCCHHHHHHHHHH----HC-
T ss_pred cCcEEEEEeCCCcch----hhhhhhhhh----------h-----cCCEEEEecccCCcchhhHHHHHHHHHHH----hC-
Confidence 577899999987532 111111110 1 278999999998642 1233444444432 22
Q ss_pred CccceEEEeEEEeecCcchhccchhhhc
Q 015085 276 SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 276 ~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
....++.+||+++.|++++++.|.+..
T Consensus 186 -~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 186 -PRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp -TTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred -CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 124689999999999999998886543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0019 Score=57.62 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCcE-EEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNV-WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~-~~vG~ng~GKSTLin~L~g~~ 330 (413)
.|.+ +++|+||||||||+++|.+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3454 459999999999999998765
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=63.72 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCcEEEEEEeCCCCCCCchH-HHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~-~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
..+++|++|+|+.......+. .+.+.+.. .+ .++++|+||+|++..... ...+++......
T Consensus 166 ~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~----------~~-----~~~i~V~NK~Dl~~~~~~---~~~~~~~~~~~l 227 (353)
T 2x2e_A 166 KENCLILAVSPANSDLANSDALKVAKEVDP----------QG-----QRTIGVITKLDLMDEGTD---ARDVLENKLLPL 227 (353)
T ss_dssp STTEEEEEEEETTSCGGGCHHHHHHHHHCT----------TC-----TTEEEEEECGGGSCTTCC---CHHHHTTCSSCC
T ss_pred CCCeEEEEEecCCCccchhHHHHHHHHhCc----------CC-----CceEEEeccccccCcchh---HHHHHhCCcccc
Confidence 456788888888642221111 23332221 12 389999999999865321 122221100000
Q ss_pred CCCccceEEEeEEEeecCcchhccchhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
. .++..++.+||+++.|++++++.+..
T Consensus 228 ~-~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 228 R-RGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp T-TCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred c-CCceEEEeCCcccccccccHHHHHHH
Confidence 0 12335778999999999999888754
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0029 Score=63.12 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=33.9
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhcc-chhhhc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLID-DVVDLA 303 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~-~I~~l~ 303 (413)
|+++|+||+|+. . ...+..+.+ .....+ ..++.+||+.+.++.+|++ .+.++.
T Consensus 216 P~i~v~NK~D~~-~---~~~l~~l~~-~~~~~~----~~vv~iSA~~e~~l~~L~~~~l~~~~ 269 (397)
T 1wxq_A 216 PMVIAANKADAA-S---DEQIKRLVR-EEEKRG----YIVIPTSAAAELTLRKAAKAGFIEYI 269 (397)
T ss_dssp CEEEEEECGGGS-C---HHHHHHHHH-HHHHTT----CEEEEECHHHHHHHHSCSSSCCCCSC
T ss_pred CEEEEEeCcccc-c---hHHHHHHHH-HHhhcC----CcEEEEeccchhhHHHHHhhhhhhhc
Confidence 999999999986 2 222333222 111112 3689999999999988766 443333
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0037 Score=56.57 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999863
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.016 Score=61.97 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=31.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+..+|.+|+|+|+.+........+.+.+.. .+. |+++|+||+|+...
T Consensus 95 ~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~----------~~~-----p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQATT----------YGV-----PRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHHH----------TTC-----CEEEEEECTTSTTC
T ss_pred HHHHCCEEEEEECCCCCCcHHHHHHHHHHHH----------cCC-----CEEEEEECCCcccc
Confidence 4455899999999987544333333333221 132 89999999999764
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0018 Score=57.78 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=25.3
Q ss_pred hcccCCcEE-EEcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 302 LAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 302 l~~~~g~~~-~vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
+...+|.++ ++|++|+|||||.++|.+.+. ..|.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 334455654 499999999999999998775 3453
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0038 Score=59.55 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|.+|+|||||++.+.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCChHHHHHHHHh
Confidence 3678899999999999999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0014 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
..++++|++|+|||||+++|++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34666999999999999999987754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0088 Score=52.70 Aligned_cols=89 Identities=22% Similarity=0.191 Sum_probs=51.2
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHcC
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~g 274 (413)
.++.+++|+|..+.. ++ ..+..++... ...... ...|+++|.||+|+... .........| ....+
T Consensus 80 ~~~~~i~v~dv~~~~-s~-~~~~~~~~~l-----~~~~~~---~~~piilV~NK~Dl~~~r~v~~~~~~~~----a~~~~ 145 (192)
T 2cjw_A 80 VGDAYLIVYSITDRA-SF-EKASELRIQL-----RRARQT---EDIPIILVGNKSDLVRXREVSVSEGRAX----AVVFD 145 (192)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHTTT---SCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred cCCEEEEEEECCCHH-HH-HHHHHHHHHH-----HHhhCC---CCCeEEEEEechhhhccccccHHHHHHH----HHHhC
Confidence 368899999988642 22 2222222111 001000 11389999999998643 2222222222 22232
Q ss_pred CCccceEEEeEEEeecCcchhccchhhh
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..++.+||++|.|++++++.+.+.
T Consensus 146 ----~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 146 ----XKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp ----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ----CceEEeccccCCCHHHHHHHHHHH
Confidence 357889999999999999887543
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0032 Score=67.31 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=57.6
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHH-HHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CCh---HHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRK-VAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSP---TRF 262 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~-l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~---~~l 262 (413)
+.+...+..+|+||+|+|+.+.....+.. +.+.+.. .+ .|+++|+||+|+.... ... +.+
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----------~~-----~~iiiVlNK~Dl~~~~~~~~ee~e~l 256 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----------RG-----LTVFFLVNAWDQVRESLIDPDDVEEL 256 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----------SC-----CCEEEEEECGGGGGGGCSSTTCHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----------hC-----CCEEEEEECcccccccccChhhHHHH
Confidence 44556677899999999997653322221 1122221 12 2799999999997542 111 111
Q ss_pred -------HHHHHHHHHHc-C---C-CccceEEEeEEE--------------eecCcchhccchhhhc
Q 015085 263 -------EHWVRQRARED-G---I-SKITKLHFVSAV--------------KNWGLKSLIDDVVDLA 303 (413)
Q Consensus 263 -------~~~~~~~~~~~-g---~-~~~~~V~~vSa~--------------~~~Gi~~Ll~~I~~l~ 303 (413)
...+...+... + . .....++.+||+ ++.|+++|.+.+.+..
T Consensus 257 ~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 257 QASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 11111112111 1 0 012368999999 8899999988886544
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=96.11 E-value=0.011 Score=63.23 Aligned_cols=49 Identities=14% Similarity=0.016 Sum_probs=31.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.++..+|.+|+|+|+.+........+.+.+.. .+ .|+++|+||+|+...
T Consensus 101 ~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~----------~~-----ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 101 RSMRVLDGAVMVYCAVGGVQPQSETVWRQANK----------YK-----VPRIAFVNKMDRMGA 149 (704)
T ss_pred HHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH----------cC-----CCEEEEEeCCCcccc
Confidence 34556899999999997643322233222211 13 289999999998754
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++|||||||.+.|.+.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46779999999999999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0008 Score=59.13 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAG 333 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~ 333 (413)
.+.++|++|+|||||++.|++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 35669999999999999999998776
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0021 Score=62.71 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH---HHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR---QRA 270 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~---~~~ 270 (413)
...+|++++|+|+..... . +.+.... .+. |.++|+||+|+... ..+..++. ..+
T Consensus 167 ~~~aD~vl~Vvd~~~~~~--~----~~l~~~~--------~~~-----p~ivv~NK~Dl~~~----~~~~~~~~~l~~~l 223 (341)
T 2p67_A 167 ARMVDCFISLQIAGGGDD--L----QGIKKGL--------MEV-----ADLIVINKDDGDNH----TNVAIARHMYESAL 223 (341)
T ss_dssp HTTCSEEEEEECC------------CCCCHHH--------HHH-----CSEEEECCCCTTCH----HHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEEeCCccHH--H----HHHHHhh--------hcc-----cCEEEEECCCCCCh----HHHHHHHHHHHHHH
Confidence 467999999999865321 0 0111000 011 78999999999642 22322222 222
Q ss_pred HHcCCC-c--cceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGIS-K--ITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~-~--~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
...+.. . ...++.+||+++.|+++|++.|.+..
T Consensus 224 ~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 224 HILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 222210 0 24688999999999999999886543
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0089 Score=62.09 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=38.0
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+|...+. +++.-+|-+|+|||+.+.....-..+.+...+. +. |.++++||+|....
T Consensus 111 vDF~~Ev~----raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~----------~l-----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFSEDTY----RVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR----------AT-----PVMTFVNKMDREAL 167 (548)
T ss_dssp GGCSHHHH----HHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT----------TC-----CEEEEEECTTSCCC
T ss_pred HHHHHHHH----HHHHhcCceEEEeecCCCcccccHHHHHHHHHh----------CC-----ceEEEEecccchhc
Confidence 44554333 344568999999999987665444454444332 33 89999999998644
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0076 Score=59.18 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=22.2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHH---HHHHHHcCCCccceEEEeEEEeecCcchhcc
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWV---RQRAREDGISKITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~---~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
|+|+|+||+|++.. ..+..+. ...++..+ ..++.+||+.+.+ ++.+.
T Consensus 176 piIlV~NK~Dl~~~----~ev~~~k~~i~~~~~~~~----i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 176 NIVPVIAKADTLTL----KERERLKKRILDEIEEHN----IKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp CEEEEEECCSSSCH----HHHHHHHHHHHHHTTCC-----CCSCCCC----------CH
T ss_pred CEEEEEECCCCCCH----HHHHHHHHHHHHHHHHCC----CCEEeCCCcCCCc-chhHH
Confidence 89999999999743 3333322 22222222 3577899999887 44433
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.021 Score=54.57 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=52.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHH---HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChH----HHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKV---AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT----RFEH 264 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l---~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~----~l~~ 264 (413)
..+..+|++++|+|+.+... ...+ .+++... .....+ .|+++|+||+|+..... .. ....
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s--~~~l~~~~~~l~~l-----~~~~~~-----~piilv~NK~Dl~~~~~-r~~~~~v~~~ 142 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEV--LKDIEIFAKALKQL-----RKYSPD-----AKIFVLLHKMDLVQLDK-REELFQIMMK 142 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCH--HHHHHHHHHHHHHH-----HHHCTT-----CEEEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred HHhccCCEEEEEEECCChhh--HHHHHHHHHHHHHH-----HHhCCC-----CeEEEEEecccccchhh-hhHHHHHHHH
Confidence 44568999999999988532 2222 2223221 011112 39999999999975210 11 1112
Q ss_pred HHHHHHHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 265 WVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 265 ~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
...++.+..|.. ...++.+||++ .++.+++..+.
T Consensus 143 ~~~~~~~~~g~~-~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 143 NLSETSSEFGFP-NLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp HHHHHHHTTTCC-SCEEEECCTTS-SHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CeEEEEeeecC-ChHHHHHHHHH
Confidence 333444444421 14688999988 66666555543
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.0013 Score=58.35 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 677899999999999999984
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.019 Score=57.54 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=54.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
+.++.++.+++|+|+. . .....+..+.... ......+. . .|.++|+||+|+... ..+..+. ..++
T Consensus 231 ~~~era~~lL~vvDls--~-~~~~~ls~g~~el-~~la~aL~-~-----~P~ILVlNKlDl~~~----~~~~~l~-~~l~ 295 (416)
T 1udx_A 231 RHIARTRVLLYVLDAA--D-EPLKTLETLRKEV-GAYDPALL-R-----RPSLVALNKVDLLEE----EAVKALA-DALA 295 (416)
T ss_dssp HHHTSSSEEEEEEETT--S-CHHHHHHHHHHHH-HHHCHHHH-H-----SCEEEEEECCTTSCH----HHHHHHH-HHHH
T ss_pred HHHHHHHhhhEEeCCc--c-CCHHHHHHHHHHH-HHHhHHhh-c-----CCEEEEEECCChhhH----HHHHHHH-HHHH
Confidence 3456789999999997 1 1122222211110 00000011 2 289999999998632 2233332 2333
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
..+ ..++.+||+++.|+++|++.|.+.+.
T Consensus 296 ~~g----~~vi~iSA~~g~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 296 REG----LAVLPVSALTGAGLPALKEALHALVR 324 (416)
T ss_dssp TTT----SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcC----CeEEEEECCCccCHHHHHHHHHHHHH
Confidence 333 36899999999999999998866543
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=63.74 Aligned_cols=63 Identities=25% Similarity=0.300 Sum_probs=30.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
.+.++|..|+|||||++.|++.... ..+........+|+|.+.....+... ....++||||..
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~~~~---------~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~ 84 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEIAST---------SAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA 84 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHH
T ss_pred EEEEECCCCChHHHHHHHHHCCCcc---------cccccccccccCccEEecceEEEEECCEEEEEEECCChH
Confidence 5778999999999999999864310 00111223344666665422111122 256899999963
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0054 Score=55.74 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 688899999999999999874
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0026 Score=59.12 Aligned_cols=31 Identities=29% Similarity=0.182 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHH---ccCcCCCCCCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGGDG 338 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~---g~~~~~~G~~~ 338 (413)
.+.++|++||||||++++|+ |...+++|.+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 35669999999999999999 87777766543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.003 Score=62.82 Aligned_cols=71 Identities=30% Similarity=0.336 Sum_probs=38.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCccc-ccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~-~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
++.++|..|+|||||++.|++.... .|..... .......+.....|+|.+.....+.. .....++||||..
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAE-GGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhh-cCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 5777999999999999999964211 1210000 00011111222456776643322222 2356799999974
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0056 Score=58.93 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=48.2
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc------------cCCcE
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG------------KRGNV 309 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~------------~~g~~ 309 (413)
...+|++|.|..++ .+. +.+++.+ ..|+.++..+...+..|...+..... .+..+
T Consensus 81 ~P~IIltrg~~~pe-----eli----e~A~~~~----IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~v 147 (314)
T 1ko7_A 81 TPAIIVTRDLEPPE-----ELI----EAAKEHE----TPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGV 147 (314)
T ss_dssp CCCEEECTTCCCCH-----HHH----HHHHHTT----CCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEE
T ss_pred CCEEEEeCCCCCCH-----HHH----HHHHHCC----CeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEE
Confidence 45788899998642 222 2334444 35777777777666666665543211 12346
Q ss_pred EEEcCCCCcHHHHHHHHHc
Q 015085 310 WAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g 328 (413)
.++|++|+||||+...|.+
T Consensus 148 l~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHh
Confidence 6699999999999999986
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=48.69 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHhhhcCCCcEEEEEEeCC-CCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAA-DFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~-d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.+...+..+|.+++|+|+. +. .+ ...+..++.............+ .|+++|+||+|+.... ....+.+.+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~~-~~~~~~~~l~ 182 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDP-KK-LTTTAEFLVDILSITESSCENG-----IDILIACNKSELFTAR-PPSKIKDALE 182 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCH-HH-HHHHHHHHHHHHHHHHHHSTTC-----CCEEEEEECTTSTTCC-CHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCCc-hh-HHHHHHHHHHHHhhhhhccccC-----CCEEEEEEchHhcCCC-CHHHHHHHHH
Confidence 3344445689999999998 32 11 1223333322111000000012 3899999999998653 2344444443
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0019 Score=62.59 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=24.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC----cCCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV----DAGRGGD 337 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~----~~~~G~~ 337 (413)
.+.++|+||+|||||+++|++.+ .+.+|.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 46679999999999999999887 4445543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0062 Score=62.47 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
..+.++|..|+|||||++.|.+
T Consensus 5 ~~V~IvGhvd~GKTTLl~~L~~ 26 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLEYIRS 26 (501)
T ss_dssp CCEEEEESTTSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4678899999999999999985
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0043 Score=57.25 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=23.4
Q ss_pred hcccCCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 302 l~~~~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+...+| ++++|++|+|||||+++|++...
T Consensus 46 ~~~~~g-~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 46 ARIPKG-VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCCCSE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCe-EEEECCCCCCHHHHHHHHHHHhC
Confidence 333444 77899999999999999998763
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0063 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=19.8
Q ss_pred Cc-EEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GN-VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~-~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+. ++++|++||||||+.+.|.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 44 4559999999999999998754
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0072 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|+|||||++.|+|..
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~~ 34 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGVW 34 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 56779999999999999999653
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0049 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.7
Q ss_pred cCCcEE-EEcCCCCcHHHHHHHHHcc
Q 015085 305 KRGNVW-AIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 305 ~~g~~~-~vG~ng~GKSTLin~L~g~ 329 (413)
.+|.++ ++|++|||||||+++|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345544 4999999999999999987
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0051 Score=59.66 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=62.5
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCC--------chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC------
Q 015085 190 LMSASGARSVVLMVVDAADFDGS--------FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS------ 255 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s--------~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~------ 255 (413)
.....+.++.|++|+|.++++.. ...+..+++..... ..+-.+ .|+++|+||+||...
T Consensus 184 w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~---~~~~~~-----~~iiL~~NK~DL~~~ki~~~~ 255 (327)
T 3ohm_A 184 WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT---YPWFQN-----SSVILFLNKKDLLEEKIMYSH 255 (327)
T ss_dssp GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT---SGGGTT-----CEEEEEEECHHHHHHHTTTSC
T ss_pred HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh---hhccCC-----ceEEEEEECchhhhhhhccch
Confidence 33567789999999988743321 11222333322110 011112 389999999998642
Q ss_pred -----------CCChHHHHHHHHHHHHHcCCC--ccceEEEeEEEeecCcchhccchhhhc
Q 015085 256 -----------SLSPTRFEHWVRQRAREDGIS--KITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 256 -----------~~~~~~l~~~~~~~~~~~g~~--~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
....+....|+...+...... .....+.+||+.+.+++.+++.+.+..
T Consensus 256 l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 256 LVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp GGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 124456667766554432110 112467899999999999988886543
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0034 Score=63.21 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||++.|++.
T Consensus 8 ~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 8 NLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5777999999999999999854
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.007 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++||+||||+||++.|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6779999999999999998654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=53.57 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999863
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0062 Score=64.74 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=0.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC--CCCCCcccccccccccccCCCCCeeeeEeecccccc-ccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA--GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPG 377 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~--~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~-~~~liDtpG 377 (413)
.+.++|.+|+|||||++.|++.... ..|.+................|.|............ ...++||||
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred EEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.023 Score=51.62 Aligned_cols=92 Identities=9% Similarity=-0.040 Sum_probs=55.1
Q ss_pred CCcEEEEEEeCCCCCCCch-HHH---HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcc-cCCCCCCChHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFP-RKV---AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKI-DLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~-~~l---~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~-DLl~~~~~~~~l~~~~~~~~ 270 (413)
.+|.||||||++|-....- .++ .+++... . ...+. |++|..||. |+ +......++.+.+. +
T Consensus 125 ~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee---~---~L~ga-----pLLVlANKqqDl-p~Ams~~EI~e~L~--L 190 (227)
T 3l82_B 125 VVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPA---F---GSSGR-----PLLVLSCISQGD-VKRMPCFYLAHELH--L 190 (227)
T ss_dssp HCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTT---S---SCSCS-----CEEEEEEESSTT-SCBCCHHHHHHHTT--G
T ss_pred CCCEEEEEeccccHhHHHHHHHHHHHHHHhcch---h---hhCCC-----eEEEEeCCCcCc-cCCCCHHHHHHHcC--C
Confidence 4799999999998643211 122 1222110 0 00132 899999996 66 44445455544332 1
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
... .+...|..+||.+|.|+.+-++++.+..
T Consensus 191 ~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 191 NLL--NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp GGG--CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCC--CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 111 2456799999999999999888875544
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.006 Score=59.61 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=47.6
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
.+.+|++++|+|+.+... ...+...+. . .+.++|+||+|+.+..........+.. .++..
T Consensus 185 ~~~~d~vl~V~d~~~~~~--~~~i~~~il------------~-----~~~ivVlNK~Dl~~~~~~~~~~~~l~~-~l~~~ 244 (349)
T 2www_A 185 ADMVDMFVLLLPPAGGDE--LQGIKRGII------------E-----MADLVAVTKSDGDLIVPARRIQAEYVS-ALKLL 244 (349)
T ss_dssp HTTCSEEEEEECCC--------------C------------C-----SCSEEEECCCSGGGHHHHHHHHHHHHH-HHTTC
T ss_pred HhhCCEEEEEEcCCcchh--HHHhHHHHH------------h-----cCCEEEEeeecCCCchhHHHHHHHHHH-HHHhc
Confidence 457899999999875321 111111010 1 267999999999632100001112211 11100
Q ss_pred CC---CccceEEEeEEEeecCcchhccchhhhc
Q 015085 274 GI---SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 274 g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.. .....++.+||+++.|+++|++.|.++.
T Consensus 245 ~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 245 RKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp C-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 0013688899999999999999986654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 413 | ||||
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 4e-05 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 3e-04 | |
| d1t9ha2 | 231 | c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C | 0.002 |
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 38/188 (20%)
Query: 199 VVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS 258
+V +VDA S + ++ + ++++ K D ++++
Sbjct: 18 IVYELVDARIPMSSRNPMIEDILKNK-----------------PRIMLLNKADKADAAVT 60
Query: 259 PTRFEHWVRQRAREDGISKITK----LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGA 314
EH+ Q R I+ + ++ + K + + IG
Sbjct: 61 QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGI 120
Query: 315 QNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFD 374
N GKSTL+N +A + P T+ V+ + + +L D
Sbjct: 121 PNVGKSTLINRLA----------KKNIAKTGDR---PGITTSQQWVK----VGKELELLD 163
Query: 375 TPGLLHPN 382
TPG+L P
Sbjct: 164 TPGILWPK 171
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.1 bits (93), Expect = 3e-04
Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 20/142 (14%)
Query: 259 PTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDLAGKRG----NVWA 311
P+ F + ++ I + + ++ ++ + D + NV
Sbjct: 4 PSSFTGYFKKFNTGRKIISQEILNLIE--LRMRAGNIQLTNSAISDALKEIDSSVLNVAV 61
Query: 312 IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371
G +GKS+ +N + RG EE+ + V T+ +
Sbjct: 62 TGETGSGKSSFINTL-------RGIGNEEEGAA----KTGVVEVTMERHPYKHPNIPNVV 110
Query: 372 LFDTPGLLHPNQITTRLTREEQ 393
+D PG+ N + +
Sbjct: 111 FWDLPGIGSTNFPPDTYLEKMK 132
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 37.0 bits (85), Expect = 0.002
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 21/137 (15%)
Query: 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301
+ ++ +TK+DL+ + + + ED + ++ S+ L +I
Sbjct: 43 QPIICITKMDLIEDQDTEDTIQAYA-----EDYRNIGYDVYLTSSKDQDSLADIIP---- 93
Query: 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR 361
+ G GKS+LLNAI+ + E H T
Sbjct: 94 -HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR-----------H 141
Query: 362 VEGVLPAQAKLFDTPGL 378
VE + + + DTPG
Sbjct: 142 VELIHTSGGLVADTPGF 158
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 413 | |||
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.82 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.77 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 99.75 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.52 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.52 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.5 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.48 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.45 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.44 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.44 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.42 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.42 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.41 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.4 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.38 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.37 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.32 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.3 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.29 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.28 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.2 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.18 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.11 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 98.82 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 98.62 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 98.55 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.5 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 98.47 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 98.34 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 98.27 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 98.26 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 98.2 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 98.18 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 98.13 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 98.1 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 98.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 98.02 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 98.02 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 98.0 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 97.99 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 97.96 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.81 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 97.81 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 97.78 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 97.77 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.77 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 97.72 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.64 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.63 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.6 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.59 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 97.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.56 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 97.54 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 97.53 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 97.51 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.46 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.44 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 97.43 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.43 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 97.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 97.38 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.37 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.36 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.34 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 97.33 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 97.32 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 97.31 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 97.3 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 97.3 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.28 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 97.26 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 97.26 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 97.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 97.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 97.21 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 97.19 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 97.19 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 97.15 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 97.15 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 97.1 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.09 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 97.09 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 97.07 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 97.06 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 97.06 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 97.05 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 97.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 97.0 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 97.0 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.97 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.96 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 96.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.91 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.9 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 96.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 96.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.8 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 96.77 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.72 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.67 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.65 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.6 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.58 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 96.55 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.52 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.49 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.44 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.44 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 96.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 96.36 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.36 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 96.33 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.28 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.28 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 96.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.2 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.14 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.12 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.11 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 96.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.03 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 96.0 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.99 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.93 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 95.89 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 95.88 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.83 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.77 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.76 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.75 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 95.7 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.68 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.61 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.61 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.48 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.45 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.39 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.37 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.33 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.26 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.21 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.13 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.08 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.08 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.08 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.07 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.03 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.94 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.94 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.92 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.9 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 94.89 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.84 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.84 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.78 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.77 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.7 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 94.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.55 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.48 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.43 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 94.36 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.36 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.33 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.3 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.29 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.22 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.11 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.99 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.96 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.85 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.83 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.8 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.78 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.77 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.69 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.64 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.62 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.49 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.48 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.36 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.32 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.19 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.17 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.03 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 93.01 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.97 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.82 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 92.74 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.7 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.69 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.57 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.53 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.51 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.49 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.44 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.43 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.34 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.32 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.25 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.23 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.14 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.11 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.92 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.88 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.87 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.84 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.79 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.78 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.66 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.44 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.29 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.21 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.06 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.0 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.83 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.78 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.43 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 90.12 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.07 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 90.01 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.94 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.86 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.8 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 89.79 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.65 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.16 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.98 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.73 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.36 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.7 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.63 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.25 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.17 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.06 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.74 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 86.26 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.96 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.93 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 85.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.87 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 84.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 84.72 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.7 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.28 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 84.23 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.2 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.93 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.79 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 83.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 83.49 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 82.87 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 82.83 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.59 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 82.54 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.5 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 82.46 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.33 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.71 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.61 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.32 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 81.17 |
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=1.8e-20 Score=177.21 Aligned_cols=151 Identities=24% Similarity=0.339 Sum_probs=106.5
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+++.+.++.+|+|++|+|++++..+.++.+.+++. +| |+|+|+||+||++. ...+.|.+
T Consensus 7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~------------~K-----p~IlVlNK~DLv~~----~~~~~w~~ 65 (273)
T d1puja_ 7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK------------NK-----PRIMLLNKADKADA----AVTQQWKE 65 (273)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS------------SS-----CEEEEEECGGGSCH----HHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc------------CC-----CeEEEEECccCCch----HHHHHHHH
Confidence 56677888999999999999999998888888764 22 89999999999864 56778876
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc-------------cCCcEEEEcCCCCcHHHHHHHHHccCcCCC
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-------------KRGNVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~-------------~~g~~~~vG~ng~GKSTLin~L~g~~~~~~ 334 (413)
.+. ..+ ...+.+|+.++.+...+.+.+.++.. ..-.++++|.+|||||||||+|.|..
T Consensus 66 ~f~-~~~----~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~---- 136 (273)
T d1puja_ 66 HFE-NQG----IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN---- 136 (273)
T ss_dssp HHH-TTT----CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSC----
T ss_pred HHH-hcC----CccceeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchhhhhhhhhccc----
Confidence 543 222 35788999999998876665533221 12246779999999999999999642
Q ss_pred CCCcccccccccccccCCCCCeeeeEeecccccccccccccccccCC
Q 015085 335 GGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (413)
Q Consensus 335 G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~~ 381 (413)
...++..||+|++...+ .......++||||+..+
T Consensus 137 -----------~~~~~~~pG~Tr~~~~i--~~~~~~~l~DTPGi~~p 170 (273)
T d1puja_ 137 -----------IAKTGDRPGITTSQQWV--KVGKELELLDTPGILWP 170 (273)
T ss_dssp -----------CC------------CCE--EETTTEEEEECCCCCCS
T ss_pred -----------eEEECCcccccccceEE--ECCCCeEEecCCCcccc
Confidence 34567899999987655 35677999999999864
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=9.1e-19 Score=159.62 Aligned_cols=163 Identities=21% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHcC
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g 274 (413)
...|.|+.|+.+.++..+ ...+.++|... +..+. +.++|+||+||+.. +..+.|.... ....
T Consensus 9 ANiD~vliV~s~~~P~~~-~~~ldR~Lv~a-------~~~~i-----~pvIvlnK~DL~~~----~~~~~~~~~~-~~~~ 70 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETS-TYIIDKFLVLA-------EKNEL-----ETVMVINKMDLYDE----DDLRKVRELE-EIYS 70 (225)
T ss_dssp ESCCEEEEEECSSTTCCC-HHHHHHHHHHH-------HHTTC-----EEEEEECCGGGCCH----HHHHHHHHHH-HHHT
T ss_pred ccCCEEEEEEeCCCCCCC-HHHHHHHHHHH-------HHcCC-----CEEEEEeCcccCCH----HHHHHHHHhh-cccc
Confidence 456889999987665433 45567777543 22344 89999999999853 4444444322 2211
Q ss_pred CCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCC
Q 015085 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (413)
Q Consensus 275 ~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pg 354 (413)
....++.+|++++.|+++|.+.+ .+...+++|.+|||||||||+|.+......|++++....++|.|+.
T Consensus 71 --~~~~v~~vSa~~~~g~~~L~~~l-----~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~---- 139 (225)
T d1u0la2 71 --GLYPIVKTSAKTGMGIEELKEYL-----KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT---- 139 (225)
T ss_dssp --TTSCEEECCTTTCTTHHHHHHHH-----SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCS----
T ss_pred --cceeEEEeccccchhHhhHHHHh-----cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccc----
Confidence 12478999999999999988776 2234566999999999999999988777777666555555555443
Q ss_pred CeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 355 tT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
... + .++.+++++||||+.... ...++.++..
T Consensus 140 --~~l--~--~l~~gg~iiDTPG~r~~~--l~~~~~~~l~ 171 (225)
T d1u0la2 140 --AQL--L--KFDFGGYVVDTPGFANLE--INDIEPEELK 171 (225)
T ss_dssp --CCE--E--ECTTSCEEESSCSSTTCC--CCSSCHHHHG
T ss_pred --eeE--E--EECCCcEEEeCCcccccc--ccccCcchhh
Confidence 122 2 356678999999997533 3446665543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=9.2e-19 Score=160.08 Aligned_cols=165 Identities=19% Similarity=0.213 Sum_probs=98.4
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
+...|.+++|+.+.+++.+ ...|.++|..+ +..+. +.++|+||+||++.......+..|.. ..+..
T Consensus 8 vANiD~~~iV~s~~~P~~~-~~~idR~Lv~a-------~~~~i-----~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~ 73 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFS-TALLDRFLVLV-------EANDI-----QPIICITKMDLIEDQDTEDTIQAYAE-DYRNI 73 (231)
T ss_dssp EECCCEEEEEEESTTTTCC-HHHHHHHHHHH-------HTTTC-----EEEEEEECGGGCCCHHHHHHHHHHHH-HHHHH
T ss_pred ccccCEEEEEEECCCCCCC-HHHHHHHHHHH-------HHcCC-----CEEEEEecccccccHHHHHHHHHHHH-HHhhc
Confidence 3457889999998776533 45677777643 22344 78999999999865211122333332 23334
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCC
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~p 353 (413)
| .+|+.+|+.++.|+++|.+.+ .+...+++|.+|||||||||+|.+......|++++....++|.|+.
T Consensus 74 g----~~v~~~Sa~~~~gl~~L~~~l-----~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~--- 141 (231)
T d1t9ha2 74 G----YDVYLTSSKDQDSLADIIPHF-----QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRH--- 141 (231)
T ss_dssp T----CCEEECCHHHHTTCTTTGGGG-----TTSEEEEEESHHHHHHHHHHHHCC-------------------CCC---
T ss_pred c----ccceeeecCChhHHHHHHHhh-----ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeee---
Confidence 4 479999999999999998877 2345566999999999999999998777777776665566565433
Q ss_pred CCeeeeEeecccccccccccccccccCCCCCCCCCCHHHHH
Q 015085 354 GTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQK 394 (413)
Q Consensus 354 gtT~~~i~~~~~l~~~~~liDtpGl~~~~~~~~~LS~ge~q 394 (413)
..++. . .+++++||||+.... ...++.++..
T Consensus 142 ---~~l~~----~-~gg~iiDTPG~r~~~--l~~~~~~~l~ 172 (231)
T d1t9ha2 142 ---VELIH----T-SGGLVADTPGFSSLE--FTDIEEEELG 172 (231)
T ss_dssp ---CCEEE----E-TTEEEESSCSCSSCC--CTTCCHHHHG
T ss_pred ---EEEEe----c-CCCEEEECCcccccc--ccccCcccch
Confidence 12221 2 357899999997532 3346666543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.9e-15 Score=137.01 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=69.8
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccc----------cccccc--
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV----------SHLTEA-- 350 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v----------~~~t~s-- 350 (413)
-+..+.||...+++.+ ++...+|+++. +|+||||||||+|+|+|+.+|++|.+......+ ..+.+.
T Consensus 4 ~nv~k~yg~~~~l~~i-sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 82 (232)
T d2awna2 4 QNVTKAWGEVVVSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYA 82 (232)
T ss_dssp EEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCC
T ss_pred EEEEEEECCEEEEeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccc
Confidence 3455778888889998 88888898777 999999999999999999999999865332222 222222
Q ss_pred CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 351 PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 351 ~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
-+|. |..+.+.+.....+ ...+++..|+. ..++.+..|||||+||+++||+| .|+.+.+|+|.
T Consensus 83 l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 83 LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp C---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTT
T ss_pred cccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1233 33444443222111 12466777775 45789999999999999999999 78889999884
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=4.8e-15 Score=136.05 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=92.4
Q ss_pred eEEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc----------
Q 015085 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT---------- 348 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t---------- 348 (413)
.|.+-...+.||...+++.+ ++..++|+++. +|+||||||||+++|+|+++|++|.+..+...+....
T Consensus 6 ~I~v~nlsk~yg~~~al~~v-sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEcce-eEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 35566677888988889999 88888898777 9999999999999999999999998654433322211
Q ss_pred cc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+. -+|. |..+.+.+.....+ ..++++..|+. ..++.+..|||||+||+++||+| .|+...+|+|+
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPt 164 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 164 (239)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred echhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCc
Confidence 11 1122 11222221111110 02356666765 45788999999999999999999 78899999884
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.50 E-value=8.1e-15 Score=134.72 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=91.6
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------- 343 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------- 343 (413)
|.+....+.||...+++.+ ++..++|+++. +|+||||||||+++|+|+..|++|.+......
T Consensus 4 i~v~nl~k~yg~~~al~~v-sl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 4 VRLVDVWKVFGEVTAVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEeEEEEECCEEEEcce-eeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 4455667788888888988 88888888777 99999999999999999999999986533222
Q ss_pred ccccccc--CCCCCe-eeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccc
Q 015085 344 VSHLTEA--PVPGTT-LGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYR 408 (413)
Q Consensus 344 v~~~t~s--~~pgtT-~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~ 408 (413)
+..+.+. -+|..| .+.+.+...+.+ ..++++..|+. ..++.+..|||||+||+++||+| .|+...
T Consensus 83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl 162 (240)
T d1g2912 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (240)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred ceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2222111 123222 222222111110 12455666665 35788999999999999999999 788899
Q ss_pred cCCCC
Q 015085 409 IKVSL 413 (413)
Q Consensus 409 l~~~~ 413 (413)
+|+|.
T Consensus 163 lDEPt 167 (240)
T d1g2912 163 MDEPL 167 (240)
T ss_dssp EECTT
T ss_pred ecCCC
Confidence 98884
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.48 E-value=1.1e-14 Score=133.83 Aligned_cols=132 Identities=16% Similarity=0.224 Sum_probs=90.9
Q ss_pred EEEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc--------------
Q 015085 281 LHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-------------- 343 (413)
Q Consensus 281 V~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-------------- 343 (413)
|.+-+..+.| |...+++.+ ++..++|+++. +|+||||||||+++|.|+..|++|.+......
T Consensus 4 i~v~nlsk~y~~g~~~aL~~v-sl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 4 IIVKNVSKVFKKGKVVALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp EEEEEEEEEEGGGTEEEEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECCCCEEEEece-EEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 3444555556 545667888 78888888777 99999999999999999999999986533222
Q ss_pred -ccccccc--CCCC-CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 344 -VSHLTEA--PVPG-TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 344 -v~~~t~s--~~pg-tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+..+.+. -+|. |..+.+.+.....+ ..++++..|+. ..++.++.|||||+||+++||+| .|+..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll 162 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence 2222222 1333 22343333211111 12567777775 45799999999999999999999 68888
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 163 llDEPt 168 (242)
T d1oxxk2 163 LLDEPF 168 (242)
T ss_dssp EEESTT
T ss_pred eecCCc
Confidence 888874
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.45 E-value=1.9e-14 Score=132.69 Aligned_cols=130 Identities=26% Similarity=0.311 Sum_probs=88.2
Q ss_pred EeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------------ccc
Q 015085 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------------HLT 348 (413)
Q Consensus 283 ~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------------~~t 348 (413)
.-...+.||...+++.+ ++...+|+++. +|+||+|||||+|+|+|+++|++|.+......+. ...
T Consensus 9 v~~l~k~yg~~~al~~v-s~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~ 87 (240)
T d1ji0a_ 9 VQSLHVYYGAIHAIKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP 87 (240)
T ss_dssp EEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred EeeEEEEECCEEEEeee-eEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccC
Confidence 34556788888889999 88889999877 9999999999999999999999998653322221 111
Q ss_pred c--cCCCCCee-eeEeecccccc--------ccccccc-cccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 E--APVPGTTL-GIVRVEGVLPA--------QAKLFDT-PGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~--s~~pgtT~-~~i~~~~~l~~--------~~~liDt-pGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
. .-++..|. +.+.+...... ..++++. +++. ..++.+..|||||+||+.+||+| .|+.+.||+|.
T Consensus 88 q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt 167 (240)
T d1ji0a_ 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPS 167 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred cccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCC
Confidence 1 12333332 22211110000 0122332 2454 45788999999999999999999 68889999884
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.44 E-value=2.9e-14 Score=130.02 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=86.4
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc----------ccc--cC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH----------LTE--AP 351 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~----------~t~--s~ 351 (413)
+..+.||.. .++.| ++...+|+++. +|+||||||||+++|+|+..|++|.+......+.. +.+ +-
T Consensus 6 nlsk~y~~~-aL~~v-s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l 83 (229)
T d3d31a2 6 SLSRKWKNF-SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (229)
T ss_dssp EEEEECSSC-EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEEEEeCCE-EEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecccccc
Confidence 445667653 56777 78888898877 99999999999999999999999986543322221 111 12
Q ss_pred CCCCe-eeeEeecccccc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVLPA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|..| .+.+.+...+.+ ...+++..|+. ..++.+..|||||+||+++||+| .|+.+.+|+|+
T Consensus 84 ~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt 155 (229)
T d3d31a2 84 FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (229)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred CccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence 33322 233322111110 12344555665 35788999999999999999999 78889999884
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.44 E-value=1.7e-14 Score=131.81 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=81.8
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------------ccccccc--CCCCC
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------------VSHLTEA--PVPGT 355 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------------v~~~t~s--~~pgt 355 (413)
+++.+ ++..++|+++. +|+||||||||+++|+|+..|++|.+...... +..+.+. -+|..
T Consensus 20 al~~i-sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~ 98 (230)
T d1l2ta_ 20 ALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (230)
T ss_dssp EEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred EEece-EEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCc
Confidence 57777 78888888777 99999999999999999999999986533221 2222222 13443
Q ss_pred e-eeeEeeccccc------------ccccccccccccC--CCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 356 T-LGIVRVEGVLP------------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 356 T-~~~i~~~~~l~------------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
| .+.+.+..... ....+++..|+.. .++.++.|||||+|||++||+| .|+...+|+|.
T Consensus 99 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPT 173 (230)
T d1l2ta_ 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPT 173 (230)
T ss_dssp CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCc
Confidence 3 23322211100 0124667777752 4778899999999999999999 67888888874
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2e-14 Score=131.99 Aligned_cols=119 Identities=21% Similarity=0.302 Sum_probs=83.8
Q ss_pred hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc---------------ccccccc--CCCC-
Q 015085 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI---------------VSHLTEA--PVPG- 354 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~---------------v~~~t~s--~~pg- 354 (413)
.+++.+ ++..++|+++. +|+||||||||+++|+|+.+|++|.+...... +..+.+. -+|.
T Consensus 19 ~al~~v-sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~ 97 (240)
T d3dhwc1 19 QALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 97 (240)
T ss_dssp EEEEEE-EEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTS
T ss_pred EEeece-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCc
Confidence 457777 78888888777 99999999999999999999999986532222 2222222 1333
Q ss_pred CeeeeEeecccccc---------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTLGIVRVEGVLPA---------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~~~i~~~~~l~~---------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
|..+.+.+...+.+ ...+++..|+. ..++.+..|||||+|||++||+| .|+...+|+|.
T Consensus 98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt 168 (240)
T d3dhwc1 98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (240)
T ss_dssp BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGG
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEecccc
Confidence 33343332211111 12567777876 45788999999999999999999 78888888873
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.42 E-value=2.9e-14 Score=132.58 Aligned_cols=129 Identities=24% Similarity=0.332 Sum_probs=89.2
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc-------------c
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT-------------E 349 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t-------------~ 349 (413)
-+..+.||...+++.+ ++...+|+++. +|+||||||||+|+|+|+++|++|.+......+.... .
T Consensus 8 ~nlsk~yg~~~aL~~v-s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q 86 (254)
T d1g6ha_ 8 ENIVKYFGEFKALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 86 (254)
T ss_dssp EEEEEEETTEEEEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCC
T ss_pred EEEEEEECCeEEEcce-EEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCC
Confidence 3445678888889999 88889999877 9999999999999999999999998664433222111 1
Q ss_pred c--CCCCCe-eeeEeecccc----------------------ccccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh-
Q 015085 350 A--PVPGTT-LGIVRVEGVL----------------------PAQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL- 402 (413)
Q Consensus 350 s--~~pgtT-~~~i~~~~~l----------------------~~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l- 402 (413)
. .++..| .+.+.+.... .....+++..|+. ..++.+..||||++||+.+||+|
T Consensus 87 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~ 166 (254)
T d1g6ha_ 87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM 166 (254)
T ss_dssp CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHH
Confidence 1 112222 1222110000 0012356666765 45788999999999999999999
Q ss_pred -cCCccccCCCC
Q 015085 403 -KPRTYRIKVSL 413 (413)
Q Consensus 403 -~~~~~~l~~~~ 413 (413)
.|+.+.||+|.
T Consensus 167 ~~P~llilDEPt 178 (254)
T d1g6ha_ 167 TNPKMIVMDEPI 178 (254)
T ss_dssp TCCSEEEEESTT
T ss_pred hCcCchhhcCCc
Confidence 78899999884
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.41 E-value=1.1e-13 Score=126.70 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=83.7
Q ss_pred eEEEeecCcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccc----------ccccccc--C
Q 015085 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI----------VSHLTEA--P 351 (413)
Q Consensus 284 vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~----------v~~~t~s--~ 351 (413)
+...+.+|...+ .+ ++...++-+.++|+||||||||+++|+|+++|++|.+...... +..+.+. -
T Consensus 5 v~~~k~~g~~~~--~v-s~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l 81 (240)
T d2onka1 5 VRAEKRLGNFRL--NV-DFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81 (240)
T ss_dssp EEEEEEETTEEE--EE-EEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC
T ss_pred EEEEEEECCEEE--EE-EEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccchhh
Confidence 355666765544 34 4544433344599999999999999999999999986533222 2222222 2
Q ss_pred CCCCe-eeeEeecccc-c------cccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTT-LGIVRVEGVL-P------AQAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT-~~~i~~~~~l-~------~~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+|..| .+.+.+.... . ...++++..|+. ..++.+..|||||+|||++||+| .|+...||+|+
T Consensus 82 ~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt 154 (240)
T d2onka1 82 FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred cccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence 34433 2333321110 0 013466677776 46789999999999999999999 68889999884
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=7.6e-14 Score=128.36 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=92.0
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc-----------ccccc
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI-----------VSHLT 348 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~-----------v~~~t 348 (413)
|..-...+.||...+++.+ ++....|+++. +|+||+|||||||+|+|+..|++|.+...... +..+.
T Consensus 3 I~v~nl~k~yg~~~vl~~v-s~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEeEEEEECCEEEEccc-eeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 4556678899999999999 88888899887 99999999999999999999999975432211 11221
Q ss_pred cc--CCCCCe-eeeEeecccc---cc------ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 349 EA--PVPGTT-LGIVRVEGVL---PA------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 349 ~s--~~pgtT-~~~i~~~~~l---~~------~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.. .++..| .+.+.+...+ .. ...+++..|+. ..++.+..||+|++||+.+|++| .|+.+.||+|.
T Consensus 82 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt 161 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 161 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred eccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 11 112222 1222111000 00 01355666775 45678999999999999999999 67889999884
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=1.5e-13 Score=127.76 Aligned_cols=132 Identities=22% Similarity=0.279 Sum_probs=90.9
Q ss_pred EEEeEEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccc-------------
Q 015085 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSH------------- 346 (413)
Q Consensus 281 V~~vSa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~------------- 346 (413)
+...+..+.||...+++.| ++...+|+++. +|+||||||||+++|+|+++|++|.+......+..
T Consensus 3 Lev~nl~k~yg~~~al~~v-s~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEEEECCEEEEcce-eeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 3345556778888899999 88888898877 99999999999999999999999986533322211
Q ss_pred ------------ccc--cCCCCCe-eeeEeecc----ccc------ccccccccccccC--CCCCCCCCCHHHHHHHHHh
Q 015085 347 ------------LTE--APVPGTT-LGIVRVEG----VLP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (413)
Q Consensus 347 ------------~t~--s~~pgtT-~~~i~~~~----~l~------~~~~liDtpGl~~--~~~~~~~LS~ge~q~v~i~ 399 (413)
+.+ +-+|..| .+.+.+.. ... ....+++..|+.. .++++..|||||+|||++|
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA 161 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 161 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence 111 1123222 22221110 000 0124567777753 3677899999999999999
Q ss_pred hhh--cCCccccCCCC
Q 015085 400 KEL--KPRTYRIKVSL 413 (413)
Q Consensus 400 r~l--~~~~~~l~~~~ 413 (413)
|+| .|+...+|+|.
T Consensus 162 raL~~~P~llilDEPT 177 (258)
T d1b0ua_ 162 RALAMEPDVLLFDEPT 177 (258)
T ss_dssp HHHHTCCSEEEEESTT
T ss_pred HHHhcCCCEEEecccc
Confidence 999 78888888874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.37 E-value=3.1e-13 Score=121.07 Aligned_cols=127 Identities=15% Similarity=0.233 Sum_probs=81.9
Q ss_pred EEEeecCcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-------cccccC-C-CC
Q 015085 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-------HLTEAP-V-PG 354 (413)
Q Consensus 285 Sa~~~~Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~-------~~t~s~-~-pg 354 (413)
....+|+. .+++.+ ++...+|++++ +|+||+|||||+++|+|+++|.+|.+......+. .+.... + ..
T Consensus 7 ~ls~~y~~-~vl~~i-s~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~ 84 (200)
T d1sgwa_ 7 DLSVGYDK-PVLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRK 84 (200)
T ss_dssp EEEEESSS-EEEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTT
T ss_pred EEEEEeCC-eEEece-EEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecccCCCC
Confidence 34456654 578888 88888888776 9999999999999999999999998654332221 111111 1 12
Q ss_pred Cee-eeEeecc-----ccc--ccccccccccccCCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 355 TTL-GIVRVEG-----VLP--AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 355 tT~-~~i~~~~-----~l~--~~~~liDtpGl~~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
.|. +.+.... ... .....++..++...++.+..||+||+||+.++++| .|+.+.||+|+
T Consensus 85 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt 153 (200)
T d1sgwa_ 85 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 153 (200)
T ss_dssp SBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred cCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 221 1111100 000 01123344444434466789999999999999999 67889999884
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.32 E-value=2.3e-12 Score=118.61 Aligned_cols=125 Identities=10% Similarity=0.190 Sum_probs=77.9
Q ss_pred eec-CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------cccccccC--
Q 015085 288 KNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSHLTEAP-- 351 (413)
Q Consensus 288 ~~~-Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~~t~s~-- 351 (413)
..| +...+++.| ++...+|+++. +|+||+|||||+++|+|++.|.+|.+...... +..+.+.+
T Consensus 9 f~Y~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 87 (242)
T d1mv5a_ 9 FAYDDSEQILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAI 87 (242)
T ss_dssp ECSSSSSCSEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCC
T ss_pred EECCCCCceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEcccccc
Confidence 345 334678888 78888888666 99999999999999999999999986533222 22232222
Q ss_pred CCCCeeeeEeecccc--cc-c-ccccccccc-----------c-CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 352 VPGTTLGIVRVEGVL--PA-Q-AKLFDTPGL-----------L-HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 352 ~pgtT~~~i~~~~~l--~~-~-~~liDtpGl-----------~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
+++|..+.+.+.... .. . ....+..++ . .-......|||||+||+++||+| .|+.+.||+|.
T Consensus 88 f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpt 167 (242)
T d1mv5a_ 88 MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167 (242)
T ss_dssp CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 244333333221000 00 0 001111111 1 01122356999999999999999 78999999874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=9.7e-13 Score=121.93 Aligned_cols=133 Identities=16% Similarity=0.196 Sum_probs=84.7
Q ss_pred eEEEeEEEeecCcc--hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccc-----------
Q 015085 280 KLHFVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS----------- 345 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~--~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~----------- 345 (413)
+|.+-+....|+.. .+++.| ++...+|++++ +|+||||||||+++|+|++.|.+|.+......+.
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~i-sl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEEEeCCCCCceeece-EEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence 46666666677543 478888 78888887666 9999999999999999999999998653332222
Q ss_pred -cccccC--CCCCeeeeEeeccc--ccc-c-------c---cccc-cc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cC
Q 015085 346 -HLTEAP--VPGTTLGIVRVEGV--LPA-Q-------A---KLFD-TP-GLL-HPNQITTRLTREEQKLVNINKEL--KP 404 (413)
Q Consensus 346 -~~t~s~--~pgtT~~~i~~~~~--l~~-~-------~---~liD-tp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~ 404 (413)
.+...+ +.+|..+.+.+... ... . . .+++ .| |+. ........|||||+||+++||+| .|
T Consensus 92 ~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p 171 (253)
T d3b60a1 92 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 171 (253)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 222211 23444333222100 000 0 0 1111 12 333 12344678999999999999999 78
Q ss_pred CccccCCCC
Q 015085 405 RTYRIKVSL 413 (413)
Q Consensus 405 ~~~~l~~~~ 413 (413)
+.+.||+|.
T Consensus 172 ~ililDEpt 180 (253)
T d3b60a1 172 PILILDEAT 180 (253)
T ss_dssp SEEEEETTT
T ss_pred CEEEecccc
Confidence 999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=9.9e-13 Score=121.74 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=85.6
Q ss_pred eEEEeEEEeecCcc---hhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------
Q 015085 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------ 343 (413)
Q Consensus 280 ~V~~vSa~~~~Gi~---~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------ 343 (413)
.|.+-+....|+.. .+++.+ ++..++|++++ +|+||||||||+++|+|++.|.+|.+..+...
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 89 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGL-TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 89 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred eEEEEEEEEECCCCCCCEeEece-EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHH
Confidence 36666666677532 378888 88888888666 99999999999999999999999986533222
Q ss_pred cccccccC--CCCCeeeeEeeccccccc-------------cccc-ccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--c
Q 015085 344 VSHLTEAP--VPGTTLGIVRVEGVLPAQ-------------AKLF-DTP-GLL-HPNQITTRLTREEQKLVNINKEL--K 403 (413)
Q Consensus 344 v~~~t~s~--~pgtT~~~i~~~~~l~~~-------------~~li-Dtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~ 403 (413)
+..+.+.+ +++|..+.+.+....... ..++ ..| |+. ..++....|||||+||+++||+| .
T Consensus 90 i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~ 169 (251)
T d1jj7a_ 90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRK 169 (251)
T ss_dssp EEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTC
T ss_pred hhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccC
Confidence 22222222 244444444331110000 0111 112 232 22455678999999999999999 7
Q ss_pred CCccccCCCC
Q 015085 404 PRTYRIKVSL 413 (413)
Q Consensus 404 ~~~~~l~~~~ 413 (413)
|+.+.+|+|.
T Consensus 170 p~ililDEpT 179 (251)
T d1jj7a_ 170 PCVLILDDAT 179 (251)
T ss_dssp CSEEEEESTT
T ss_pred CcEEEecCcC
Confidence 8889998874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.7e-12 Score=119.28 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=83.0
Q ss_pred EEeEEEeec--CcchhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------ccc
Q 015085 282 HFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------VSH 346 (413)
Q Consensus 282 ~~vSa~~~~--Gi~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v~~ 346 (413)
.+-.....| +...+++.| ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+...... +..
T Consensus 3 ~~~nvsf~Y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 3 TFRNIRFRYKPDSPVILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEESSTTSCEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEEeCCCCcceEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 333444455 445578888 78888887665 99999999999999999999999986543322 222
Q ss_pred ccccC--CCCCeeeeEeeccccccc------------cccc-cccc-cc-CCCCCCCCCCHHHHHHHHHhhhh--cCCcc
Q 015085 347 LTEAP--VPGTTLGIVRVEGVLPAQ------------AKLF-DTPG-LL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (413)
Q Consensus 347 ~t~s~--~pgtT~~~i~~~~~l~~~------------~~li-DtpG-l~-~~~~~~~~LS~ge~q~v~i~r~l--~~~~~ 407 (413)
+.+.+ +++|.++.+.+....... ...+ ..|. +. ........|||||+||+++||+| .|+.+
T Consensus 82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~il 161 (241)
T d2pmka1 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161 (241)
T ss_dssp ECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchh
Confidence 22222 345555554431110000 0011 1121 11 12344578999999999999999 68899
Q ss_pred ccCCCC
Q 015085 408 RIKVSL 413 (413)
Q Consensus 408 ~l~~~~ 413 (413)
.+|+|.
T Consensus 162 ilDEpt 167 (241)
T d2pmka1 162 IFDEAT 167 (241)
T ss_dssp EECCCC
T ss_pred hhhCCc
Confidence 999874
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.20 E-value=2.5e-12 Score=119.18 Aligned_cols=133 Identities=15% Similarity=0.246 Sum_probs=85.8
Q ss_pred eEEEeEEEeecCc--chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccc------------c
Q 015085 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI------------V 344 (413)
Q Consensus 280 ~V~~vSa~~~~Gi--~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~------------v 344 (413)
.|.+-+....|+. ..+++.| ++..++|+.++ +|+||+|||||+++|+|++.|.+|.+...... +
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 94 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 94 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred EEEEEEEEEEeCCCCCcceece-EEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhee
Confidence 4666666666754 4588888 88888887666 99999999999999999999999986533222 2
Q ss_pred cccccc--CCCCCeeeeEeecccccc--c-ccc----------cccc-ccc-CCCCCCCCCCHHHHHHHHHhhhh--cCC
Q 015085 345 SHLTEA--PVPGTTLGIVRVEGVLPA--Q-AKL----------FDTP-GLL-HPNQITTRLTREEQKLVNINKEL--KPR 405 (413)
Q Consensus 345 ~~~t~s--~~pgtT~~~i~~~~~l~~--~-~~l----------iDtp-Gl~-~~~~~~~~LS~ge~q~v~i~r~l--~~~ 405 (413)
..+... -+++|.++.+.+...... . ... .+.| |+. .-......|||||+||+++||+| .|+
T Consensus 95 ~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ 174 (255)
T d2hyda1 95 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 174 (255)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred eeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence 222222 235555555543111000 0 011 1112 222 11233457999999999999999 789
Q ss_pred ccccCCCC
Q 015085 406 TYRIKVSL 413 (413)
Q Consensus 406 ~~~l~~~~ 413 (413)
.+.||+|.
T Consensus 175 ililDEpt 182 (255)
T d2hyda1 175 ILILDEAT 182 (255)
T ss_dssp EEEEESTT
T ss_pred EEEEeCcc
Confidence 99998874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=2.5e-12 Score=120.91 Aligned_cols=119 Identities=15% Similarity=0.221 Sum_probs=75.2
Q ss_pred chhccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccC--CCCCeeeeEeeccccccc
Q 015085 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP--VPGTTLGIVRVEGVLPAQ 369 (413)
Q Consensus 293 ~~Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~--~pgtT~~~i~~~~~l~~~ 369 (413)
..+++.+ ++...+|++++ +|+||+|||||+++|+|++.|++|.+.... .+..+...+ +++|..+.+.+.......
T Consensus 49 ~pvL~~i-sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 49 NPVLKNI-NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-RVSFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp CEEEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-CEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CeEEeCe-EEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-EEEEEeccccccCceeeccccccccccch
Confidence 3466777 77778888766 999999999999999999999999755332 223333222 345444443321111100
Q ss_pred ------------cccccccccc--CCCCCCCCCCHHHHHHHHHhhhh--cCCccccCCCC
Q 015085 370 ------------AKLFDTPGLL--HPNQITTRLTREEQKLVNINKEL--KPRTYRIKVSL 413 (413)
Q Consensus 370 ------------~~liDtpGl~--~~~~~~~~LS~ge~q~v~i~r~l--~~~~~~l~~~~ 413 (413)
..+...+... ........|||||+||+++||+| .|+.+.||+|+
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPt 186 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 186 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcc
Confidence 0011111111 01233456999999999999999 78899999884
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.7e-11 Score=111.89 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=72.5
Q ss_pred hccchhhhcccCCcEEE-EcCCCCcHHHHHHHHHccCcCCCCCCccccccccccc------------ccCC--CCCeee-
Q 015085 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT------------EAPV--PGTTLG- 358 (413)
Q Consensus 295 Ll~~I~~l~~~~g~~~~-vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t------------~s~~--pgtT~~- 358 (413)
.++.| ++...+|+++. +|+||+|||||+++|+|+. +.+|.+......+.... .... ..++..
T Consensus 14 ~l~~i-sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 91 (231)
T d1l7vc_ 14 RLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 91 (231)
T ss_dssp TSCSE-EEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHH
T ss_pred eecCE-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHH
Confidence 35555 67778889888 9999999999999999976 57787543322221111 1000 111110
Q ss_pred eEeecccccc-----ccccccccccc-CCCCCCCCCCHHHHHHHHHhhhh---------cCCccccCCCC
Q 015085 359 IVRVEGVLPA-----QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL---------KPRTYRIKVSL 413 (413)
Q Consensus 359 ~i~~~~~l~~-----~~~liDtpGl~-~~~~~~~~LS~ge~q~v~i~r~l---------~~~~~~l~~~~ 413 (413)
.+... .... ...+.+..|+. ..++....|||||+||+.+|++| .|+.+.||+|+
T Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt 160 (231)
T d1l7vc_ 92 YLTLH-QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 160 (231)
T ss_dssp HHHHH-CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCS
T ss_pred Hhhhc-cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCC
Confidence 00000 0000 01344455664 35677889999999999999998 34899999985
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=2.8e-09 Score=92.31 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=70.4
Q ss_pred hHHHHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH
Q 015085 183 DHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF 262 (413)
Q Consensus 183 ~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l 262 (413)
...+.+++.+++..+|+|++|+|+.+.....+..+.+++... . ...|+++|+||+|+... .+
T Consensus 71 ~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~----------~---~~~piilv~NK~Dl~~~---~~-- 132 (178)
T d1wf3a1 71 GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL----------V---GKVPILLVGNKLDAAKY---PE-- 132 (178)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGG----------T---TTSCEEEEEECGGGCSS---HH--
T ss_pred chhcccccccccccccceeeeechhhhhcccccchhhheecc----------c---cchhhhhhhcccccccC---HH--
Confidence 344566777888999999999999886554455566655432 1 12389999999999754 12
Q ss_pred HHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 263 EHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 263 ~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
++.....+.. +...++.+||+++.|+++|++.|.+++++
T Consensus 133 -~~~~~~~~~~---~~~~~~~iSA~~~~gi~~L~~~i~~~lpe 171 (178)
T d1wf3a1 133 -EAMKAYHELL---PEAEPRMLSALDERQVAELKADLLALMPE 171 (178)
T ss_dssp -HHHHHHHHTS---TTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred -HHHHHHHhhc---ccCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 2222222222 23578899999999999999999877654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=98.62 E-value=2.6e-08 Score=87.20 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=68.1
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 187 ~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
.....+....+++|++|+|+.......+..+.+++... ++ |+++|+||+|+++. ..+.+..
T Consensus 96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~----------~~-----piivv~NK~D~~~~----~~~~~~~ 156 (195)
T d1svia_ 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY----------GI-----PVIVIATKADKIPK----GKWDKHA 156 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TC-----CEEEEEECGGGSCG----GGHHHHH
T ss_pred Hhhhhccccchhhhhhhhhccccccccccccccccccc----------cC-----cceechhhccccCH----HHHHHHH
Confidence 34555667778999999999877665566666666542 33 89999999999754 2233333
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+...+..+......++.+||++|+|+++|++.|.++.
T Consensus 157 ~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 157 KVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3333333332345789999999999999999886553
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.55 E-value=2.4e-08 Score=86.61 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=65.2
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
+.+..++..+|++++|+|+.+........+..++... ++ |+++|+||+|+...+. ........+
T Consensus 74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~----------~~-----p~iiv~NKiD~~~~~~-~~~~~~~~~ 137 (179)
T d1wb1a4 74 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF----------NI-----PIIVVITKSDNAGTEE-IKRTEMIMK 137 (179)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT----------TC-----CBCEEEECTTSSCHHH-HHHHHHHHH
T ss_pred cchhhhhhhccccccccccccccchhhhhhhhhhhhc----------CC-----cceeccccccccCHHH-HHHHHHHHH
Confidence 4556677889999999999986544334444443321 33 8999999999975410 111222233
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
...+........+++++||++|+|+++|++.|.+...
T Consensus 138 ~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~ 174 (179)
T d1wb1a4 138 SILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 174 (179)
T ss_dssp HHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCC
Confidence 3333322112347899999999999999999866554
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.50 E-value=2.9e-08 Score=85.63 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=41.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.|.++|.+|||||||||+|+|.. +.++..||||++...+. .....++||||+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~----------------~~~~~~~g~T~~~~~~~---~~~~~ivDtpG~~~ 55 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK----------------VRRGKRPGVTRKIIEIE---WKNHKIIDMPGFGF 55 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC----------------CSSSSSTTCTTSCEEEE---ETTEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------ceeeCCCCEeecccccc---cccceecccCCcee
Confidence 47789999999999999999532 23467899998876653 23567899999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.47 E-value=6.2e-08 Score=82.88 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
....+...+..+|++++++|+.+.....+..+.+++... ++ |+++|+||+|++.. .-.+.
T Consensus 70 ~~~~~~~~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~----------~~-----pviiv~NK~Dl~~~-----~~~~~ 129 (171)
T d1mkya1 70 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS----------TV-----DTILVANKAENLRE-----FEREV 129 (171)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TC-----CEEEEEESCCSHHH-----HHHHT
T ss_pred cccccccccccCcEEEEeecccccccccccccccccccc----------cc-----cccccchhhhhhhh-----hhhHH
Confidence 334555667889999999999876655555566665532 43 89999999998632 11111
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
..+ +...+ ..+++++||++|.|+++|++.|.+.+.+
T Consensus 130 ~~~-~~~~~---~~~~i~iSAk~g~gid~L~~~i~~~l~e 165 (171)
T d1mkya1 130 KPE-LYSLG---FGEPIPVSAEHNINLDTMLETIIKKLEE 165 (171)
T ss_dssp HHH-HGGGS---SCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHH-HHhcC---CCCeEEEecCCCCCHHHHHHHHHHhCCC
Confidence 111 22222 3567899999999999999988766544
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=98.34 E-value=1.6e-07 Score=81.11 Aligned_cols=94 Identities=23% Similarity=0.326 Sum_probs=60.8
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~ 268 (413)
+...++.+|+|++|+|+..........+..++... + .|+|+|+||+|+.... .....+.+++++
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~----------~-----~~~i~v~nK~D~~~~~~~~~~~~~~~~~~ 149 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR----------G-----RASVVVFNKWDLVVHREKRYDEFTKLFRE 149 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT----------T-----CEEEEEEECGGGSTTGGGCHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEeecccccchhhHHHHHHHHHHc----------C-----CceeeeccchhhhcchhhhhhhHHHHHHH
Confidence 33445568999999999876544444444444321 3 3899999999997542 122333333333
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. ......+++.+||++|+|+++|++.|..
T Consensus 150 ~~---~~~~~~~i~~vSa~~g~gv~~L~~~i~~ 179 (186)
T d1mkya2 150 KL---YFIDYSPLIFTSADKGWNIDRMIDAMNL 179 (186)
T ss_dssp HC---GGGTTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred Hh---cccCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 22 1123457999999999999999998843
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=4.1e-07 Score=78.09 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=60.0
Q ss_pred HHHHHhhhcCCCcEEEEEEeCCCCC-----------CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCC
Q 015085 186 VGRKLMSASGARSVVLMVVDAADFD-----------GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP 254 (413)
Q Consensus 186 l~~~~~~~~~~~dlVl~VvD~~d~~-----------~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~ 254 (413)
+...+....+.+|++++|+|+.+.. ...+..+.+++... ++ |+++|+||+|++.
T Consensus 71 ~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~----------~~-----p~iiv~NK~D~~~ 135 (184)
T d2cxxa1 71 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL----------DI-----PTIVAVNKLDKIK 135 (184)
T ss_dssp HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT----------TC-----CEEEEEECGGGCS
T ss_pred hhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc----------CC-----CEEEEEeeeehhh
Confidence 3444556677889999999986421 12223333333221 33 8999999999875
Q ss_pred CCCChHHHHHHHHHHHHHcCCC-ccceEEEeEEEeecCcchhccchhhhcc
Q 015085 255 SSLSPTRFEHWVRQRAREDGIS-KITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 255 ~~~~~~~l~~~~~~~~~~~g~~-~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
. .+....+..+... .... ....++.+||++|+|+++|++.|.+.+.
T Consensus 136 ~---~~~~~~~~~~~~~-~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~ 182 (184)
T d2cxxa1 136 N---VQEVINFLAEKFE-VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 182 (184)
T ss_dssp C---HHHHHHHHHHHHT-CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHhc-ccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence 4 2222232222211 1110 1124778999999999999998876654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.26 E-value=1.9e-07 Score=85.74 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=40.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccccc-ccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~-~~~~liDtpGl~~ 380 (413)
.++++|.+|+|||||+|+|+|... ..++..+++|.+......... ....++||||+..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~---------------~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~ 92 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV---------------VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 92 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc---------------eeecCCCCcceeEEEEEEEeccEEEEEEeeecccC
Confidence 577899999999999999996431 223455677765544432222 3478999999974
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=4e-07 Score=88.98 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
-+|.++|.+|||||||||+|.|...-..| .......+||.+...+.....+...++||||+..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~~~~~-----------~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~ 119 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGNEEEG-----------AAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 119 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTT-----------SCCCCC----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCc-----------cCCCCCCCCceeeeeeeccCCCeEEEEeCCCccc
Confidence 36888999999999999999975422222 1223445677776666544445678999999964
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=98.18 E-value=9.5e-07 Score=77.71 Aligned_cols=88 Identities=22% Similarity=0.167 Sum_probs=53.9
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
...+++..+|++++|||+.+.......+...++... +. +++|+++||+|+...+...+.+..-++.
T Consensus 82 ~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~----------~~----~~iIv~iNK~D~~~~~~~~~~i~~~i~~ 147 (196)
T d1d2ea3 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI----------GV----EHVVVYVNKADAVQDSEMVELVELEIRE 147 (196)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT----------TC----CCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh----------cC----CcEEEEEecccccccHHHHHHHHHHHHH
Confidence 345678889999999999987654344444443322 22 4799999999998542111223333344
Q ss_pred HHHHcCCC-ccceEEEeEEEeec
Q 015085 269 RAREDGIS-KITKLHFVSAVKNW 290 (413)
Q Consensus 269 ~~~~~g~~-~~~~V~~vSa~~~~ 290 (413)
++...+.. .-..++.+||.+|.
T Consensus 148 ~l~~~~~~~~~~pii~iSa~~g~ 170 (196)
T d1d2ea3 148 LLTEFGYKGEETPIIVGSALCAL 170 (196)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHH
T ss_pred HHHHhCCCcccCEEEEEEccccc
Confidence 44444431 11358899998883
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=9e-07 Score=74.17 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=57.3
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
++.+.+..+|+|++|+|+.+........+...+. . .++++++||+|+..+. ..+.+ ..
T Consensus 73 ~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~------------~-----~~~i~~~~k~d~~~~~-~~~~~----~~ 130 (160)
T d1xzpa2 73 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIK------------N-----KRYLVVINKVDVVEKI-NEEEI----KN 130 (160)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHT------------T-----SSEEEEEEECSSCCCC-CHHHH----HH
T ss_pred HHHHHHHhCCEEEEEEeCCCCcchhhhhhhhhcc------------c-----ccceeeeeeccccchh-hhHHH----HH
Confidence 4445566789999999999865543444333322 1 2799999999998653 22211 11
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
..+ ...+++.+||++|.|+++|++.|.
T Consensus 131 ---~~~--~~~~~~~vSA~~g~gi~~L~~~I~ 157 (160)
T d1xzpa2 131 ---KLG--TDRHMVKISALKGEGLEKLEESIY 157 (160)
T ss_dssp ---HHT--CSTTEEEEEGGGTCCHHHHHHHHH
T ss_pred ---HhC--CCCcEEEEECCCCCCHHHHHHHHH
Confidence 122 225689999999999999998874
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.10 E-value=1.6e-06 Score=76.37 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=62.0
Q ss_pred HHhhhcCCCcEEEEEEeCCCCC-CCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~-~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~ 267 (413)
.+..++..+|++|+|||+.+.. .....+...++... +. +++|+++||+|+...... ........
T Consensus 102 ~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~----------~i----~~iIV~vNK~Dl~~~~~~-~~~~~~~~ 166 (205)
T d2qn6a3 102 TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII----------GV----KNLIIVQNKVDVVSKEEA-LSQYRQIK 166 (205)
T ss_dssp HHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----------TC----CCEEEEEECGGGSCHHHH-HHHHHHHH
T ss_pred hhhcceeccccccccccccccccchhHHHHHHHHHHc----------CC----ceeeeccccCCCccchHH-HHHHHHHH
Confidence 3456778899999999998753 22222333333221 32 478999999999754211 11112222
Q ss_pred HHHHHcCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 268 ~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
..+..... .-..++.+||++|.|+++|++.|.++.+.
T Consensus 167 ~~l~~~~~-~~~p~ipiSA~~g~nI~~L~e~i~~~ip~ 203 (205)
T d2qn6a3 167 QFTKGTWA-ENVPIIPVSALHKINIDSLIEGIEEYIKT 203 (205)
T ss_dssp HHHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHhccccC-CCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence 22222221 12358899999999999999998776543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.03 E-value=5.5e-07 Score=77.67 Aligned_cols=56 Identities=29% Similarity=0.238 Sum_probs=35.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeee-Eeec-cccccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI-VRVE-GVLPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~-i~~~-~~l~~~~~liDtpGl~ 379 (413)
+|.++|.+|||||||||+|+|.. ..+...+++|.+. +... ........++||||+.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~----------------~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~ 60 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK----------------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC----------------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCC----------------CceecCCCceEeeeeceeEecCCcEEEEecCCCcc
Confidence 58889999999999999998532 1223344444332 2211 1112246789999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=2.2e-06 Score=73.44 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=59.5
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.....+..++++++++|....+......+..++.... ....++ |+++|+||+|++.+ +.++... +
T Consensus 72 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----p~iiv~NK~D~~~~----~~~~~~~-~ 136 (180)
T d1udxa2 72 EFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYD-----PALLRR-----PSLVALNKVDLLEE----EAVKALA-D 136 (180)
T ss_dssp HHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHC-----HHHHHS-----CEEEEEECCTTSCH----HHHHHHH-H
T ss_pred HHHHHHHhhhhhhhhcccccccccchhhhhhhhhccc-----cccchh-----hhhhhhhhhhhhhH----HHHHHHH-H
Confidence 3445567889999999987653322222233322110 011122 89999999999753 3333332 2
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+...+ ..++.+||++|+|+++|++.|.++.
T Consensus 137 ~~~~~~----~~~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 137 ALAREG----LAVLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp HHHTTT----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhcC----CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 233222 4689999999999999999886544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=7.5e-07 Score=74.74 Aligned_cols=88 Identities=18% Similarity=0.186 Sum_probs=58.9
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCchHHH-HHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH
Q 015085 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (413)
Q Consensus 187 ~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l-~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~ 265 (413)
.+++......+|++++++|+.+........+ .+++... ..+ .|+++|+||+||.+......
T Consensus 71 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--------~~~-----~~iilv~NK~Dl~~~~~~~~----- 132 (161)
T d2gj8a1 71 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--------PAK-----LPITVVRNKADITGETLGMS----- 132 (161)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS--------CTT-----CCEEEEEECHHHHCCCCEEE-----
T ss_pred HHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhc--------ccc-----cceeeccchhhhhhhHHHHH-----
Confidence 3556667788999999999987655433332 2232211 112 38999999999876532111
Q ss_pred HHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 266 ~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+. ...+++.+||+++.|+++|++.|.+
T Consensus 133 ------~~---~~~~~~~iSAk~~~gi~~L~~~l~~ 159 (161)
T d2gj8a1 133 ------EV---NGHALIRLSARTGEGVDVLRNHLKQ 159 (161)
T ss_dssp ------EE---TTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ------Hh---CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 11 2257899999999999999988853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.00 E-value=2.3e-06 Score=73.21 Aligned_cols=59 Identities=37% Similarity=0.356 Sum_probs=40.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
|.|.++|.+|||||||+|+|+|.. ...++..++||.+....... ......++||||+..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~---------------~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~ 65 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVK---------------VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 65 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC---------------CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---------------ceeecccCCcccccccceeeeeeeeeeecccccccc
Confidence 467889999999999999999632 12234567777655432211 223567899999853
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.99 E-value=3.8e-06 Score=75.21 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=60.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh------------
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP------------ 259 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~------------ 259 (413)
.++..+|++++|||+.+........+.+++... ++ |+|+|+||+|++......
T Consensus 89 ~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----------~~-----p~iivlNK~D~~~~~~~~~~~~~~~~~~~~ 153 (227)
T d1g7sa4 89 RGGALADLAILIVDINEGFKPQTQEALNILRMY----------RT-----PFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (227)
T ss_dssp SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT----------TC-----CEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred hcccccceEEEEEecccCcccchhHHHHHhhcC----------CC-----eEEEEEECccCCCchhhhhhHHHHHhhhcc
Confidence 466779999999999987665566666655432 33 899999999998653110
Q ss_pred -HHHHHHHHHHH-------HHcCC-----------CccceEEEeEEEeecCcchhccchhhh
Q 015085 260 -TRFEHWVRQRA-------REDGI-----------SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 260 -~~l~~~~~~~~-------~~~g~-----------~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+..+..... ...+. .....++.+||.+|.|+++|++.|..+
T Consensus 154 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l 215 (227)
T d1g7sa4 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (227)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 11111111111 11111 112368889999999999988887544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=97.96 E-value=4e-06 Score=73.10 Aligned_cols=100 Identities=11% Similarity=0.152 Sum_probs=60.1
Q ss_pred HHHhhhcCCCcEEEEEEeCCCCCCCc-hHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 188 RKLMSASGARSVVLMVVDAADFDGSF-PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 188 ~~~~~~~~~~dlVl~VvD~~d~~~s~-~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
..+.+.+..+|.+++|||+.+..... ..+...++... ++ +++++|+||+|+.+.... ......+
T Consensus 93 ~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~----------~~----~~iiv~inK~D~~d~~~~-~~~~~~~ 157 (195)
T d1kk1a3 93 TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII----------GQ----KNIIIAQNKIELVDKEKA-LENYRQI 157 (195)
T ss_dssp HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------TC----CCEEEEEECGGGSCHHHH-HHHHHHH
T ss_pred HHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh----------cC----ccceeeeecccchhhHHH-HHHHHHH
Confidence 34555667799999999998864321 22223333221 32 368999999999754110 1111122
Q ss_pred HHHHHHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 267 ~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+++...+. ....++.+||.+|.|+++|++.|.++.
T Consensus 158 ~~~~~~~~~-~~~~iIpiSA~~G~ni~~Ll~~I~~~i 193 (195)
T d1kk1a3 158 KEFIEGTVA-ENAPIIPISALHGANIDVLVKAIEDFI 193 (195)
T ss_dssp HHHHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHhccccC-CCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence 223322221 123578999999999999999886654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=5.4e-06 Score=69.27 Aligned_cols=58 Identities=34% Similarity=0.414 Sum_probs=38.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||||+|+|... ..++..||++...+...... .....++|+||+..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 61 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGREA---------------AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC---------------SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------eEeecccccccceEeeeeeccCceeeecccccccc
Confidence 578899999999999999996431 11234566665544332222 23567899999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.81 E-value=1.2e-05 Score=68.59 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+|.++|.+|||||||||+|+|.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5788999999999999999854
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.81 E-value=1.1e-06 Score=73.53 Aligned_cols=58 Identities=31% Similarity=0.433 Sum_probs=38.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-cccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~~ 380 (413)
++.++|.+|||||||+|+|+|... ..++..+++|...+...... .....++||||+..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 60 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------eeeeccccccccceeEEEEeCCeeEEecccccccc
Confidence 477899999999999999996431 22345566665443322112 23466889999863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.78 E-value=4.1e-06 Score=78.75 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+|.+||.+|||||||||+|++.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4778999999999999999964
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=1.3e-05 Score=67.40 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=57.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
++.++.+++|+|..+.. + ...+.+++... ..+..+ .|+++|+||+|+... ....+..+.|.+ .
T Consensus 72 ~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~~~~-----~~iilVgnK~Dl~~~~~v~~~~~~~~~~----~ 135 (164)
T d1z2aa1 72 YRGAQACVLVFSTTDRE-S-FEAISSWREKV-----VAEVGD-----IPTALVQNKIDLLDDSCIKNEEAEGLAK----R 135 (164)
T ss_dssp HTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHHCS-----CCEEEEEECGGGGGGCSSCHHHHHHHHH----H
T ss_pred hccCceEEEEEeccchh-h-hhhcccccccc-----cccCCC-----ceEEEeeccCCcccceeeeehhhHHHHH----H
Confidence 56789999999998743 2 22344444322 111223 389999999999754 334455555543 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ..++.+||++|.|++++++.|.+
T Consensus 136 ~~----~~~~e~Sak~g~~v~e~f~~l~~ 160 (164)
T d1z2aa1 136 LK----LRFYRTSVKEDLNVSEVFKYLAE 160 (164)
T ss_dssp HT----CEEEECBTTTTBSSHHHHHHHHH
T ss_pred cC----CEEEEeccCCCcCHHHHHHHHHH
Confidence 33 25788999999999999887743
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=97.77 E-value=1.5e-05 Score=67.55 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=56.4
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
....+..+|.+++|+|+.|.. ++ ..+..++....... .. ...|+++|+||+|+.... ....+.+.+.
T Consensus 77 ~~~~~~~~~~ii~v~d~~d~~-s~-~~~~~~~~~~~~~~---~~-----~~~pillv~nK~Dl~~~~-~~~~~~~~~~-- 143 (176)
T d1fzqa_ 77 WRSYFENTDILIYVIDSADRK-RF-EETGQELTELLEEE---KL-----SCVPVLIFANKQDLLTAA-PASEIAEGLN-- 143 (176)
T ss_dssp HHHHHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHTTCG---GG-----TTCCEEEEEECTTSTTCC-CHHHHHHHTT--
T ss_pred HHHHhhccceeEEeecccccc-ch-hhhhhhhhhhhhhh---cc-----CCCeEEEEEEeccccccc-cHHHHHHHHH--
Confidence 345567899999999998753 22 22222222110000 00 123899999999997542 2222222211
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..........++.+||++|.|++++++.|.+
T Consensus 144 -~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 144 -LHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp -GGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred -HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 0111112346888999999999999987743
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.72 E-value=1.1e-05 Score=74.99 Aligned_cols=58 Identities=38% Similarity=0.473 Sum_probs=39.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeee----Eeecc--------------ccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGI----VRVEG--------------VLPAQ 369 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~----i~~~~--------------~l~~~ 369 (413)
++.+||.+|||||||||+|++...+ .++.+|+||++. +.++- .....
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~---------------~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~ 76 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLG---------------NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF 76 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTT---------------STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---------------CcCCCCccCccCCeEEEeccccchhhhhhcccCCceeccc
Confidence 5778999999999999999964321 235678888653 33210 01123
Q ss_pred ccccccccccC
Q 015085 370 AKLFDTPGLLH 380 (413)
Q Consensus 370 ~~liDtpGl~~ 380 (413)
..++|.||+..
T Consensus 77 i~~~DvaGLv~ 87 (296)
T d1ni3a1 77 LTVFDIAGLTK 87 (296)
T ss_dssp EEEECTGGGCC
T ss_pred ceeeecccccc
Confidence 57899999975
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.64 E-value=1.3e-05 Score=69.30 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=31.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l~~~~~liDtpGl~~ 380 (413)
.|.++|.+|||||||||+|+|... ...++..+++|....... ......++|++|+..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~~--------------~~~~~~~~~~t~~~~~~~--~~~~~~~~d~~~~~~ 81 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRKN--------------LARTSSKPGKTQTLNFYI--INDELHFVDVPGYGF 81 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--ETTTEEEEECCCBCC
T ss_pred EEEEECCCCCCHHHHHHHhcCCCc--------------eEEeecccceeeeccccc--ccccceEEEEEeecc
Confidence 578899999999999999996431 112345566666554432 223345677776643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=1.5e-05 Score=68.15 Aligned_cols=57 Identities=39% Similarity=0.431 Sum_probs=33.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-cccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~ 379 (413)
+|.++|.+|||||||+|+|++.. ...++..+++|......... .+....++|+||+.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~ 67 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE---------------RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST---------------TEEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---------------cceeecccccccccceeeeccCCceeeeeccCCcc
Confidence 57889999999999999999632 11233445555543222111 23346788999875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=2.9e-05 Score=65.79 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=60.9
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
.......++.+++++|..+.. ++ ..+.+++... ..+.........|+++|.||+|+.......++.++|.++
T Consensus 72 ~~~~~~~~~~~i~~~d~~~~~-s~-~~~~~~~~~i-----~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~- 143 (174)
T d1wmsa_ 72 RTPFYRGSDCCLLTFSVDDSQ-SF-QNLSNWKKEF-----IYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD- 143 (174)
T ss_dssp HGGGGTTCSEEEEEEETTCHH-HH-HTHHHHHHHH-----HHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-
T ss_pred hhhhhhccceEEEEEeeeccc-cc-chhhhHHHHH-----HHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH-
Confidence 445677899999999998642 22 2222332211 011111111224899999999997655556666666542
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ...++.+||++++|++++++.+.+
T Consensus 144 ---~~---~~~~~e~Sak~~~gI~e~f~~l~~ 169 (174)
T d1wmsa_ 144 ---NG---DYPYFETSAKDATNVAAAFEEAVR 169 (174)
T ss_dssp ---TT---CCCEEECCTTTCTTHHHHHHHHHH
T ss_pred ---cC---CCeEEEEcCCCCcCHHHHHHHHHH
Confidence 22 135788999999999999877643
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.60 E-value=2.6e-05 Score=66.77 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=56.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....++.+++|+|..+... ...+.+++..... . . ........|+++|+||+||.......+....+... .
T Consensus 71 ~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~i~~-~---~-~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~---~ 140 (184)
T d1vg8a_ 71 FYRGADCCVLVFDVTAPNT--FKTLDSWRDEFLI-Q---A-SPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---K 140 (184)
T ss_dssp GGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHH-H---H-CCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---T
T ss_pred cccCccEEEEeecccchhh--hhcchhhHHHHHH-H---h-ccccccCCCEEEEEEeecccccchhHHHHHHHHHH---h
Confidence 3557899999999976321 1223333221100 0 0 00000113899999999987655444444444321 2
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ..++.+||++|+|++++++.+.+
T Consensus 141 ~~----~~~~e~Sak~~~gI~e~f~~l~~ 165 (184)
T d1vg8a_ 141 NN----IPYFETSAKEAINVEQAFQTIAR 165 (184)
T ss_dssp TS----CCEEECBTTTTBSHHHHHHHHHH
T ss_pred cC----CeEEEEcCCCCcCHHHHHHHHHH
Confidence 22 35788999999999999887744
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.59 E-value=1.7e-05 Score=67.91 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
.+...+..++.++++++................... . ..+..+ ...+|+++|+||+|+... ...++.+
T Consensus 72 ~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~-~---~~~~~~--~~~kp~ivv~NK~Dl~~~---~~~~~~~--- 139 (185)
T d1lnza2 72 QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE-L---SEYNLR--LTERPQIIVANKMDMPEA---AENLEAF--- 139 (185)
T ss_dssp HHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHH-H---HHSCSS--TTTSCBCBEEECTTSTTH---HHHHHHH---
T ss_pred HHHHHHHHhhhhhheeeecccccchhhhhhhhhhhc-c---chhhhh--ccCCcchhhccccchHhH---HHHHHHH---
Confidence 344455667899999988766544322211111100 0 000011 012389999999999743 1222222
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhhhcc
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG 304 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~ 304 (413)
.+..+ .-.+++.+||++|.|+++|++.|.+.+.
T Consensus 140 -~~~~~--~~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 140 -KEKLT--DDYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp -HHHCC--SCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -HHHhc--cCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence 22222 2246889999999999999998866543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2e-05 Score=66.58 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=57.9
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...+|++++|+|+.+... ...+..++.... ..+.. ....|+++|+||+|+... ....++.++|. +.
T Consensus 71 ~~~a~~~ilv~d~~~~~s--~~~~~~~~~~~~-----~~~~~--~~~~piilVgnK~Dl~~~~~v~~~e~~~~~----~~ 137 (171)
T d2erxa1 71 ISKGHAFILVYSITSRQS--LEELKPIYEQIC-----EIKGD--VESIPIMLVGNKCDESPSREVQSSEAEALA----RT 137 (171)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTTHHHHHHHH-----HHHC-----CCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred ccceeEEEEEeecccccc--hhcccchhhhhh-----hhhcc--CCCCcEEEEeecccccccccccHHHHHHHH----HH
Confidence 445799999999987421 122222221110 00000 012389999999998654 33444555553 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhccc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~ 305 (413)
.+ ..++.+||++|.|++++++.|.++..+
T Consensus 138 ~~----~~~~e~Sak~~~~v~e~f~~l~~~~~~ 166 (171)
T d2erxa1 138 WK----CAFMETSAKLNHNVKELFQELLNLEKR 166 (171)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred cC----CeEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 44 257889999999999999988776543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=97.57 E-value=2.1e-05 Score=67.20 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=55.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....++.+++|+|+.|... + ....+++..... .......|+++|+||+|+.... ....+.+.+. ...
T Consensus 81 ~~~~~~~ii~v~d~~d~~s-~-~~~~~~l~~~~~--------~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~--~~~ 147 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDR-M-STASKELHLMLQ--------EEELQDAALLVFANKQDQPGAL-SASEVSKELN--LVE 147 (182)
T ss_dssp TTTTEEEEEEEEETTCTTT-H-HHHHHHHHHHTT--------SSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTT--TTT
T ss_pred hhccceeEEEEeeeccccc-c-hhHHHHHHHHHH--------hhccCCcceEEEEEeecccccc-CHHHHHHHHH--HHH
Confidence 4567899999999998643 2 223333321100 0001224999999999986431 2233322110 000
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
. ......++.+||++|.|++++++.|.+..
T Consensus 148 ~-~~~~~~~~e~SA~~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 148 L-KDRSWSIVASSAIKGEGITEGLDWLIDVI 177 (182)
T ss_dssp C-CSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred H-hhCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 01123578899999999999988876543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=97.56 E-value=2e-05 Score=66.83 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHH
Q 015085 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (413)
Q Consensus 189 ~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~ 268 (413)
........++.+++|+|+.+... ...+.+++....... . ....|+++|+||+|+.... ....+...+.
T Consensus 72 ~~~~~~~~~~~ii~v~D~s~~~~--~~~~~~~l~~~~~~~---~-----~~~~piiiv~NK~Dl~~~~-~~~~i~~~~~- 139 (173)
T d1e0sa_ 72 LWRHYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDR---E-----MRDAIILIFANKQDLPDAM-KPHEIQEKLG- 139 (173)
T ss_dssp HHGGGTTTCCEEEEEEETTCGGG--HHHHHHHHHHHHTSG---G-----GTTCEEEEEEECTTSTTCC-CHHHHHHHTT-
T ss_pred HHHhhhcccceEEEEEecccchh--HHHHHHHHHHHhhhc---c-----cccceeeeeeecccccccc-cHHHHHHHHH-
Confidence 34457788999999999987432 222333332211000 0 0124999999999986432 2222222110
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+.... .....++.+||++|.|++++++.|.+
T Consensus 140 -~~~~~-~~~~~~~e~SA~tg~gv~e~~~~l~~ 170 (173)
T d1e0sa_ 140 -LTRIR-DRNWYVQPSCATSGDGLYEGLTWLTS 170 (173)
T ss_dssp -GGGCC-SSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred -HHHHH-hCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence 00010 01235778999999999999988854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.54 E-value=1.5e-05 Score=73.44 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.+||-+|||||||||+|++.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5778999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.53 E-value=2.6e-05 Score=65.99 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=57.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC--CChHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS--LSPTRFEHWVRQR 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~--~~~~~l~~~~~~~ 269 (413)
.....++.+++|+|..+.. ++ ..+..++.... .+.........|+++|+||+|+.... ...+..++|.
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-s~-~~~~~~~~~i~-----~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~--- 140 (175)
T d1ky3a_ 71 AFYRGADCCVLVYDVTNAS-SF-ENIKSWRDEFL-----VHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA--- 140 (175)
T ss_dssp CCSTTCCEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHH---
T ss_pred HHhhccceEEEEeeccccc-cc-chhhhcchhhh-----hhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHH---
Confidence 4567789999999998743 22 22333332110 00011111224899999999987532 2333444443
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ...++.+||++|.|++++++.|.+.
T Consensus 141 -~~~~---~~~~~e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 141 -KSLG---DIPLFLTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp -HHTT---SCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -HHcC---CCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 3333 2357889999999999998877543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00015 Score=61.89 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=54.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~~ 258 (413)
.....+|++++|+|+++.. ++......+... ......+ .|+++|.||+||.+. ...
T Consensus 76 ~~~~~a~~~ilv~d~t~~~-Sf~~~~~~~~~~-----~~~~~~~-----~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~ 144 (185)
T d2atxa1 76 LSYPMTDVFLICFSVVNPA-SFQNVKEEWVPE-----LKEYAPN-----VPFLLIGTQIDLRDDPKTLARLNDMKEKPIC 144 (185)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHH-----HHHHSTT-----CCEEEEEECTTSTTCHHHHHHHTTTTCCCCC
T ss_pred hcccccceeeeccccchHH-HHHHHHHHHHHH-----HHhcCCC-----CCeeEeeeccccccchhhhhhhhhccccccc
Confidence 3567799999999998743 222111111111 1111112 389999999998752 112
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.++..+| ++..+. ...+.+||++|.|++++++.+..
T Consensus 145 ~~~~~~~----a~~~~~---~~~~E~SAk~~~gv~e~F~~li~ 180 (185)
T d2atxa1 145 VEQGQKL----AKEIGA---CCYVECSALTQKGLKTVFDEAII 180 (185)
T ss_dssp HHHHHHH----HHHHTC---SCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHH----HHHcCC---CEEEEecCCCCcCHHHHHHHHHH
Confidence 2333333 333332 24567899999999999887643
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.48 E-value=2.3e-05 Score=66.14 Aligned_cols=58 Identities=31% Similarity=0.325 Sum_probs=30.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeeccc-ccccccccccccccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV-LPAQAKLFDTPGLLH 380 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~-l~~~~~liDtpGl~~ 380 (413)
.|.++|.+|||||||+|.|+|... ..++..+++|...+...+. ......++|++|+..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~---------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 60 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK---------------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 60 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc---------------ceecccCceeeccccccccccccccccccccceee
Confidence 467899999999999999996431 1123445666543332111 122356788888753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=97.46 E-value=2.9e-05 Score=65.01 Aligned_cols=98 Identities=18% Similarity=0.069 Sum_probs=55.5
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~ 270 (413)
......++.+++|+|+.|... + ......+...... . . ....|+++|+||+|+.... ........+. .
T Consensus 64 ~~~~~~~~~~i~v~d~~d~~~-~-~~~~~~~~~~~~~----~--~--~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~--~ 130 (165)
T d1ksha_ 64 RNYFESTDGLIWVVDSADRQR-M-QDCQRELQSLLVE----E--R--LAGATLLIFANKQDLPGAL-SCNAIQEALE--L 130 (165)
T ss_dssp GGGCTTCSEEEEEEETTCGGG-H-HHHHHHHHHHHTC----G--G--GTTCEEEEEEECTTSTTCC-CHHHHHHHTT--G
T ss_pred Hhhhhhhhcceeeeecccchh-H-HHHHHhhhhhhhh----c--c--cCCCceEEEEecccccccc-CHHHHHHHHH--h
Confidence 346678899999999988532 2 2222222111000 0 0 0124899999999986432 2222222110 1
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.... .....++.+||++|.|++++++.|.+.
T Consensus 131 ~~~~-~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 161 (165)
T d1ksha_ 131 DSIR-SHHWRIQGCSAVTGEDLLPGIDWLLDD 161 (165)
T ss_dssp GGCC-SSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hhhh-cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 1111 122358889999999999999887544
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00017 Score=61.04 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=54.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~~ 258 (413)
..+..+|.+++|+|..+.. ++. .+.++..... .....+ .|+++|.||+|+.... ..
T Consensus 69 ~~~~~~~~~ilv~d~~~~~-Sf~-~~~~~~~~~~----~~~~~~-----~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~ 137 (177)
T d1kmqa_ 69 LSYPDTDVILMCFSIDSPD-SLE-NIPEKWTPEV----KHFCPN-----VPIILVGNKKDLRNDEHTRRELAKMKQEPVK 137 (177)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH----HHHSTT-----SCEEEEEECGGGTTCHHHHHHHHHTTCCCCC
T ss_pred hhcccchhhhhhcccchhH-HHH-HHHHHHHHHH----HHhCCC-----CceEEeeecccccchhhHHHHHHHhhccccc
Confidence 4567899999999998732 222 2222211111 111112 3899999999996431 11
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.++... +++..+. ...+.+||++|.|++++++.+.+
T Consensus 138 ~~e~~~----~a~~~~~---~~~~E~SAkt~~gi~e~F~~i~~ 173 (177)
T d1kmqa_ 138 PEEGRD----MANRIGA---FGYMECSAKTKDGVREVFEMATR 173 (177)
T ss_dssp HHHHHH----HHHHTTC---SEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHH----HHHHcCC---cEEEEecCCCCcCHHHHHHHHHH
Confidence 122222 3333331 35678999999999999887754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.44 E-value=4.1e-05 Score=66.33 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
..|.++|.+|||||||||.|.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999963
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=8.1e-05 Score=62.14 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=57.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|..+... ...+.+++.... .... ...|+++|.||+|+... ....+.... +.+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s--~~~i~~~~~~~~-----~~~~----~~~~iilvgnK~Dl~~~~~~~~~~~~~----~~~ 133 (164)
T d1yzqa1 69 YIRDSAAAVVVYDITNVNS--FQQTTKWIDDVR-----TERG----SDVIIMLVGNKTDLADKRQVSIEEGER----KAK 133 (164)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHTHHHHHHHHH-----HHHT----TSSEEEEEEECTTCGGGCCSCHHHHHH----HHH
T ss_pred HhhccceEEEeeccccccc--hhhhHhhHHHHH-----HhcC----CCceEEEEecccchhhhhhhhHHHHHH----HHH
Confidence 4567899999999987421 223333333210 0110 12489999999998643 223233333 344
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
..+ ...+.+||++|.|++++++.|...+
T Consensus 134 ~~~----~~~~e~SAk~g~~v~e~f~~i~~~l 161 (164)
T d1yzqa1 134 ELN----VMFIETSAKAGYNVKQLFRRVAAAL 161 (164)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred HcC----CEEEEecCCCCcCHHHHHHHHHHhh
Confidence 444 3578899999999999999886543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.43 E-value=6.9e-05 Score=61.52 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
|++.++|.+|||||||+|.|.+.
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999963
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.43 E-value=0.00015 Score=60.99 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=58.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|.+++|+|..+... ...+.++.... ... . ....++++|+||+|+... ....+..+.+ .
T Consensus 73 ~~~~~ad~~ilv~d~~~~~s--~~~~~~~~~~~-----~~~--~--~~~~~iivv~nK~D~~~~~~v~~~~~~~~----~ 137 (169)
T d3raba_ 73 AYYRGAMGFILMYDITNEES--FNAVQDWSTQI-----KTY--S--WDNAQVLLVGNKCDMEDERVVSSERGRQL----A 137 (169)
T ss_dssp TTTTTCCEEEEEEETTCHHH--HHTHHHHHHHH-----HHH--C--CSCCEEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHHhcCCEEEEEEECccchh--hhhhhhhhhhh-----hcc--c--CCcceEEEEEeecccccccccchhhhHHH----H
Confidence 35778999999999987421 11222222111 011 1 122489999999998654 2333444444 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
+..+ ..++.+||++|.|++++++.|.+..
T Consensus 138 ~~~~----~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 138 DHLG----FEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp HHHT----CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHcC----CEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3444 3588999999999999998886544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00012 Score=61.53 Aligned_cols=91 Identities=19% Similarity=0.133 Sum_probs=56.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|+.+.. + ...+..++.... ... + ....|+++|+||+||... .....+.++|. +
T Consensus 68 ~~~~~d~~ilv~d~t~~~-s-~~~~~~~~~~i~-----~~~-~--~~~~piilvgnK~Dl~~~~~v~~~~~~~~~----~ 133 (168)
T d2gjsa1 68 CMAMGDAYVIVYSVTDKG-S-FEKASELRVQLR-----RAR-Q--TDDVPIILVGNKSDLVRSREVSVDEGRACA----V 133 (168)
T ss_dssp HHTSCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHC-C----CCCEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred chhhhhhhceeccccccc-c-ccccccccchhh-----ccc-c--cccceEEEeecccchhhhcchhHHHHHHHH----H
Confidence 456789999999998742 2 233334433210 000 1 122389999999999754 33344444443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..+ ..++.+||++|.|++++++.|.+
T Consensus 134 ~~~----~~~~e~Sak~~~~v~~~f~~l~~ 159 (168)
T d2gjsa1 134 VFD----CKFIETSAALHHNVQALFEGVVR 159 (168)
T ss_dssp HHT----SEEEECBTTTTBSHHHHHHHHHH
T ss_pred hcC----CEEEEEeCCCCcCHHHHHHHHHH
Confidence 333 35778999999999998887754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=7.8e-05 Score=62.50 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=57.8
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...++++++|+|..+.. + ...+.+++.... ... +. ...|+++|.||+|+.......+.++.|.+ ..
T Consensus 72 ~~~~~~~iiv~d~~~~~-s-~~~~~~~~~~i~-----~~~-~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 137 (166)
T d1ctqa_ 72 MRTGEGFLCVFAINNTK-S-FEDIHQYREQIK-----RVK-DS--DDVPMVLVGNKCDLAARTVESRQAQDLAR----SY 137 (166)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHH-TC--SSCCEEEEEECTTCSCCCSCHHHHHHHHH----HH
T ss_pred hhcccccceeecccccc-c-HHHHHHHHHHHH-----Hhc-CC--CCCeEEEEecccccccccccHHHHHHHHH----Hh
Confidence 44579999999998742 1 223334433210 011 11 12389999999999766555555555543 33
Q ss_pred CCCccceEEEeEEEeecCcchhccchhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+ ..++.+||++|.|+++++..|.+
T Consensus 138 ~----~~~~e~Sak~g~gi~e~f~~i~~ 161 (166)
T d1ctqa_ 138 G----IPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp T----CCEEECCTTTCTTHHHHHHHHHH
T ss_pred C----CeEEEEcCCCCcCHHHHHHHHHH
Confidence 3 25789999999999999887754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.37 E-value=2e-05 Score=66.61 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGG 336 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~ 336 (413)
++.++|+||+|||||+++|++.+.+..|.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~ 30 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIG 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcce
Confidence 47789999999999999999998877664
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=5.5e-05 Score=63.86 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
|.|.++|.+|||||||||+|+|.
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45777999999999999999964
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00014 Score=61.99 Aligned_cols=92 Identities=17% Similarity=0.181 Sum_probs=59.1
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
..+.++.+++|+|+.+.. + ...+..++... .........|+++|+||+|+... ....++..+|. +
T Consensus 84 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~--------~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~----~ 149 (186)
T d2f7sa1 84 FFRDAMGFLLMFDLTSQQ-S-FLNVRNWMSQL--------QANAYCENPDIVLIGNKADLPDQREVNERQARELA----D 149 (186)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHHHHHHHHTC--------CCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HHhcCCEEEEEEeccccc-c-ceeeeeccchh--------hhhccCCCceEEEEeeeccchhhhcchHHHHHHHH----H
Confidence 467899999999997742 1 23344443321 00111123489999999999643 34445555554 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|.|++++++.+.+.
T Consensus 150 ~~~----~~~~e~Sak~~~~i~e~f~~l~~~ 176 (186)
T d2f7sa1 150 KYG----IPYFETSAATGQNVEKAVETLLDL 176 (186)
T ss_dssp HTT----CCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 344 257899999999999998887654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=9.5e-05 Score=62.35 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=57.4
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...++++++++|+.+.... ...+...+... . .+.++|+||+|++.. ...+...........
T Consensus 83 ~~~~~~~l~~~d~~~~~~~-~~~~~~~l~~~----------~-----~~~i~v~~k~d~~~~---~~~~~~~~~~~~~~~ 143 (179)
T d1egaa1 83 IGDVELVIFVVEGTRWTPD-DEMVLNKLREG----------K-----APVILAVNKVDNVQE---KADLLPHLQFLASQM 143 (179)
T ss_dssp CCCEEEEEEEEETTCCCHH-HHHHHHHHHSS----------S-----SCEEEEEESTTTCCC---HHHHHHHHHHHHTTS
T ss_pred hhhcceeEEEEecCccchh-HHHHHHHhhhc----------c-----Cceeeeeeeeeccch---hhhhhhHhhhhhhhc
Confidence 3467888899998753221 22222222211 1 379999999998754 233333333333333
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhhcccC
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR 306 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~~~~ 306 (413)
+..+++.+||++|+|+++|++.|.+.++++
T Consensus 144 ---~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~ 173 (179)
T d1egaa1 144 ---NFLDIVPISAETGLNVDTIAAIVRKHLPEA 173 (179)
T ss_dssp ---CCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred ---CCCCEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence 335799999999999999999997776543
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.00011 Score=61.89 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=57.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....++.+++|+|+.+.. ++ ..+.+++.... ....+ .|+++|+||+||.......+ ...|. +
T Consensus 71 ~~~~~~~~~ilv~d~~~~~-Sf-~~~~~~~~~~~-----~~~~~-----~piilvgnK~Dl~~~~~~~~-~~~~~----~ 133 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRV-TY-KNVPNWHRDLV-----RVCEN-----IPIVLCGNKVDIKDRKVKAK-SIVFH----R 133 (170)
T ss_dssp GGTTTCCEEEEEEETTSGG-GG-TTHHHHHHHHH-----HHHCS-----CCEEEEEECCCCSCSCCTTT-SHHHH----S
T ss_pred hhcccccchhhcccccccc-cc-chhHHHHHHHh-----hccCC-----CceeeecchhhhhhhhhhhH-HHHHH----H
Confidence 3466789999999998853 22 33444443221 11112 39999999999976543222 22332 2
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ...+.+||++|.|++++++.|.+.
T Consensus 134 ~~~----~~~~e~Sak~~~~v~e~f~~l~~~ 160 (170)
T d1i2ma_ 134 KKN----LQYYDISAKSNYNFEKPFLWLARK 160 (170)
T ss_dssp SCS----SEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 222 357889999999999998887543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00012 Score=61.94 Aligned_cols=93 Identities=19% Similarity=0.125 Sum_probs=57.5
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
..+..+|.+++|+|+++.. + ...+.++...... .. + ....|+++|+||+||... ....+..+++ .
T Consensus 73 ~~~~~~~~~ilvfd~t~~~-s-~~~~~~~~~~i~~-----~~-~--~~~~piilvgnK~Dl~~~~~v~~~~~~~~----a 138 (172)
T d2g3ya1 73 HCMQVGDAYLIVYSITDRA-S-FEKASELRIQLRR-----AR-Q--TEDIPIILVGNKSDLVRCREVSVSEGRAC----A 138 (172)
T ss_dssp CCCCCCSEEEEEEETTCHH-H-HHHHHHHHHHHHT-----SG-G--GTTSCEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred ccccccceeeeeecccccc-h-hhhhhhhhhhhhh-----cc-c--cCCceEEEEeccccccccccccHHHHHHH----H
Confidence 4577899999999998732 2 2233333321100 00 0 012489999999998654 3344444443 3
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ...+.+||++|.|++++++.|.+.
T Consensus 139 ~~~~----~~~~e~Sak~g~~i~~~f~~l~~~ 166 (172)
T d2g3ya1 139 VVFD----CKFIETSAAVQHNVKELFEGIVRQ 166 (172)
T ss_dssp HHHT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEEeCCCCcCHHHHHHHHHHH
Confidence 3333 256779999999999988877543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=0.00014 Score=61.03 Aligned_cols=91 Identities=12% Similarity=0.122 Sum_probs=56.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..++.+++|+|..+... ...+..+..... .. . ....|+++|.||+|+..+ ....+..+.| .+
T Consensus 75 ~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~~~----~~---~--~~~~~iilvgnK~Dl~~~~~v~~e~~~~~----~~ 139 (170)
T d1r2qa_ 75 YYRGAQAAIVVYDITNEES--FARAKNWVKELQ----RQ---A--SPNIVIALSGNKADLANKRAVDFQEAQSY----AD 139 (170)
T ss_dssp HHTTCSEEEEEEETTCHHH--HHHHHHHHHHHH----HH---S--CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HH
T ss_pred HhhCcceEEEEeccchhhH--HHHHHHHhhhhh----hc---c--CCCceEEeecccccccccccccHHHHHHH----HH
Confidence 3567899999999887421 122222222110 00 1 122489999999998644 3333444444 33
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ..++.+||++|+|++++++.|.+.
T Consensus 140 ~~~----~~~~e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 140 DNS----LLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hcC----CEEEEeeCCCCCCHHHHHHHHHHH
Confidence 333 368889999999999999887543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=97.32 E-value=4.8e-05 Score=64.97 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+|.++|.+|+|||||+|+|++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 57889999999999999999643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.31 E-value=0.00016 Score=60.54 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=56.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....++.+++|+|+.+.. + ...+..++... ... . ....|+++|+||+|+... ....++.+++. +
T Consensus 73 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~--~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~ 137 (167)
T d1z0ja1 73 YYRGSAAAIIVYDITKEE-T-FSTLKNWVREL-----RQH--G--PPSIVVAIAGNKCDLTDVREVMERDAKDYA----D 137 (167)
T ss_dssp HHTTCSEEEEEEETTCHH-H-HHHHHHHHHHH-----HHH--S--CTTSEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HHhhccceEEEeeechhh-h-hhhHHHhhhhh-----hhc--c--CCcceEEEecccchhccccchhHHHHHHHH----H
Confidence 345689999999997632 1 22333332211 000 1 122489999999999643 33444455443 3
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..+ ...+.+||++|.|+++++..|.+.
T Consensus 138 ~~~----~~~~e~SAk~~~nV~e~f~~l~~~ 164 (167)
T d1z0ja1 138 SIH----AIFVETSAKNAININELFIEISRR 164 (167)
T ss_dssp HTT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HcC----CEEEEEecCCCCCHHHHHHHHHHh
Confidence 333 357889999999999998887543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.0002 Score=60.36 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=55.4
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...+|++++|+|..+.. + ...+.+++... ..+ . ....|+++|.||+|+... ....+....|. +.
T Consensus 73 ~~~~d~~ilv~d~~~~~-s-f~~~~~~~~~~-----~~~--~--~~~~piilv~nK~D~~~~~~~~~~~~~~~a----~~ 137 (173)
T d2a5ja1 73 YRGAAGALLVYDITRRE-T-FNHLTSWLEDA-----RQH--S--SSNMVIMLIGNKSDLESRRDVKREEGEAFA----RE 137 (173)
T ss_dssp HTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHH--S--CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HH
T ss_pred hhccCEEEEEEeecChH-H-HHhHHHHHHHH-----HHh--C--CCCCeEEEEecCCchhhhhhhHHHHHHHHH----HH
Confidence 45689999999998742 2 22333333221 001 1 122489999999998543 33344455543 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ..++.+||++|.|+++++..+.+
T Consensus 138 ~~----~~~~e~Sa~tg~~V~e~f~~i~~ 162 (173)
T d2a5ja1 138 HG----LIFMETSAKTACNVEEAFINTAK 162 (173)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHHH
T ss_pred cC----CEEEEecCCCCCCHHHHHHHHHH
Confidence 33 35788999999999998877644
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00011 Score=61.42 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=57.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
....+|.+++|+|..+.. + ...+.+++..... .. +. ...|+++|+||+|+... ....+..+.|.+
T Consensus 72 ~~~~~d~~ilv~d~~~~~-s-~~~~~~~~~~i~~-----~~-~~--~~~piilvgnK~Dl~~~r~v~~~~~~~~a~---- 137 (167)
T d1xtqa1 72 YSIDINGYILVYSVTSIK-S-FEVIKVIHGKLLD-----MV-GK--VQIPIMLVGNKKDLHMERVISYEEGKALAE---- 137 (167)
T ss_dssp GTSSCCEEEEEEETTCHH-H-HHHHHHHHHHHHH-----HH-CS--SCCCEEEEEECTTCGGGCCSCHHHHHHHHH----
T ss_pred hhhhhhhhhhhcccchhh-h-hhhhhhhhhhhhh-----cc-cc--cccceeeeccccccccccchhHHHHHHHHH----
Confidence 456789999999998742 2 2333444332111 00 11 12489999999998643 334455555543
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..+ ...+.+||++|.|++++++.|..
T Consensus 138 ~~~----~~~~e~Sak~~~~v~~~f~~li~ 163 (167)
T d1xtqa1 138 SWN----AAFLESSAKENQTAVDVFRRIIL 163 (167)
T ss_dssp HHT----CEEEECCTTCHHHHHHHHHHHHH
T ss_pred HcC----CEEEEEecCCCCCHHHHHHHHHH
Confidence 333 24677999999999999887643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=97.28 E-value=5.9e-05 Score=63.16 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=54.6
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....++.+++|+|+.+.. ++ ..+..++....... . ....|+++|+||.|+.... ....+.+.+ ..
T Consensus 66 ~~~~~~~~~i~v~d~~~~~-~~-~~~~~~~~~~~~~~---~-----~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~---~~ 131 (164)
T d1zd9a1 66 RYCRGVSAIVYMVDAADQE-KI-EASKNELHNLLDKP---Q-----LQGIPVLVLGNKRDLPGAL-DEKELIEKM---NL 131 (164)
T ss_dssp HHHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG---G-----GTTCCEEEEEECTTSTTCC-CHHHHHHHT---TG
T ss_pred ccccccchhhccccccccc-cc-chhhhhhhhhhhhh---c-----ccCCcEEEEEeccccchhh-hHHHHHHHH---HH
Confidence 3456789999999998742 22 22222222111000 0 0124899999999986432 222222211 11
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.........++.+||++|.|++++++.|.+
T Consensus 132 ~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 132 SAIQDREICCYSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHhCCCEEEEEeCcCCcCHHHHHHHHHH
Confidence 111112246788999999999999888754
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=97.26 E-value=0.0002 Score=63.50 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=54.2
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHH---HH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VR 267 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~---~~ 267 (413)
.+.+..+|.+++|||+.+.......+...++... |. +.+|+++||+|+.... ....... +.
T Consensus 107 ~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~----------gv----~~iiv~vNK~D~~~~~--~~~~~~~~~~l~ 170 (222)
T d1zunb3 107 ATGASTCDLAIILVDARYGVQTQTRRHSYIASLL----------GI----KHIVVAINKMDLNGFD--ERVFESIKADYL 170 (222)
T ss_dssp HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT----------TC----CEEEEEEECTTTTTSC--HHHHHHHHHHHH
T ss_pred ccccccCceEEEEeccccCcccchHHHHHHHHHc----------CC----CEEEEEEEcccccccc--ceehhhhHHHHh
Confidence 3456778999999999987654444444433322 32 4699999999998642 2222222 22
Q ss_pred HHHHHcCCCccc--eEEEeEEEeecCcchhc
Q 015085 268 QRAREDGISKIT--KLHFVSAVKNWGLKSLI 296 (413)
Q Consensus 268 ~~~~~~g~~~~~--~V~~vSa~~~~Gi~~Ll 296 (413)
.+++..+.. .. .++.+||.+|.|+.+.-
T Consensus 171 ~~~~~~~~~-~~~i~~IPiSA~~G~ni~~~s 200 (222)
T d1zunb3 171 KFAEGIAFK-PTTMAFVPMSALKGDNVVNKS 200 (222)
T ss_dssp HHHHTTTCC-CSEEEEEECCTTTCTTTSSCC
T ss_pred hhhHhhccC-CCceEEEEEEcccCccCCcCc
Confidence 334444431 12 35788999998875543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00016 Score=60.55 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=55.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...++++++|+|..+.. + ...+.++..... ... . ....|+++|+||+|+... .......+.|. +.
T Consensus 72 ~~~a~~~ilv~d~~~~~-s-~~~~~~~~~~~~-----~~~-~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~ 137 (167)
T d1kaoa_ 72 IKNGQGFILVYSLVNQQ-S-FQDIKPMRDQII-----RVK-R--YEKVPVILVGNKVDLESEREVSSSEGRALA----EE 137 (167)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHT-T--TSCCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hhcccceeeeeeecchh-h-hhhhhchhhhhh-----hhc-c--CCCCCEEEEEEccchhhcccchHHHHHHHH----HH
Confidence 44579999999998742 1 223333332210 000 1 122489999999998653 33334444443 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ..++.+||++|.|++++++.|.+
T Consensus 138 ~~----~~~~e~Sak~g~~i~e~f~~i~~ 162 (167)
T d1kaoa_ 138 WG----CPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp HT----SCEEEECTTCHHHHHHHHHHHHH
T ss_pred cC----CeEEEECCCCCcCHHHHHHHHHH
Confidence 33 24788999999999998877643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.26 E-value=0.00023 Score=59.76 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=56.4
Q ss_pred hhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHH
Q 015085 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (413)
Q Consensus 191 ~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~ 269 (413)
...+..++.+++|+|..+.. + ...+.+++... ... . ....|+++|.||+|+... ....++.++|.
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~i-----~~~--~--~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~--- 137 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEE-S-FRCLPEWLREI-----EQY--A--SNKVITVLVGNKIDLAERREVSQQRAEEFS--- 137 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHH-H-HHTHHHHHHHH-----HHH--S--CTTCEEEEEEECGGGGGGCSSCHHHHHHHH---
T ss_pred HHHHhccceEEEeeecccch-h-hhhhhhhhhhh-----ccc--c--cccccEEEEEeecccccccchhhhHHHHHH---
Confidence 34567899999999998742 1 22222332211 001 1 122489999999998654 33344455543
Q ss_pred HHHcCCCccceEEEeEEEeecCcchhccchh
Q 015085 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 270 ~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
+..+ ..++.+||++|+|+++++..|.
T Consensus 138 -~~~~----~~~~~~SAktg~gV~e~f~~l~ 163 (171)
T d2ew1a1 138 -EAQD----MYYLETSAKESDNVEKLFLDLA 163 (171)
T ss_dssp -HHHT----CCEEECCTTTCTTHHHHHHHHH
T ss_pred -HhCC----CEEEEEccCCCCCHHHHHHHHH
Confidence 3333 2578899999999999877654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=97.24 E-value=0.00015 Score=61.05 Aligned_cols=90 Identities=17% Similarity=0.079 Sum_probs=56.2
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...++.+++|+|..+.. + ...+..++.... ..... ...|+++|+||+|+... ....+..+.|.+ .
T Consensus 73 ~~~~~~~ilv~d~~~~~-s-~~~~~~~~~~i~-----~~~~~---~~~piiivgnK~Dl~~~~~v~~~~~~~~~~----~ 138 (168)
T d1u8za_ 73 FRSGEGFLCVFSITEME-S-FAATADFREQIL-----RVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----Q 138 (168)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHHCC---TTSCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred ccccceeEEEeeccchh-h-hhhHHHHHHHHH-----HhhCC---CCCcEEEEeccccccccccccHHHHHHHHH----H
Confidence 44589999999998743 2 233334433211 01111 12389999999998643 334455555543 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ...+.+||++|.|++++++.|.+
T Consensus 139 ~~----~~~~e~Sak~g~gv~e~f~~l~~ 163 (168)
T d1u8za_ 139 WN----VNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HT----CEEEECCTTTCTTHHHHHHHHHH
T ss_pred cC----CeEEEEcCCCCcCHHHHHHHHHH
Confidence 33 35788999999999998877643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.00017 Score=60.62 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=38.5
Q ss_pred cEEEEEEcccCCCCCCChHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 242 ~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
++++|+||+|++........... +++.++..+ ...+++.+||++|+|+++|++.|.++
T Consensus 129 ~~~~v~~k~D~~~~~~~~~~~~~-~~~~l~~~~--~~~~~i~vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 129 AVLVLLTKADKLASGARKAQLNM-VREAVLAFN--GDVQVETFSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp CEEEEEECGGGSCHHHHHHHHHH-HHHHHGGGC--SCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cccchhhhhhccCHHHHHHHHHH-HHHHHHhhC--CCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 79999999999854211112222 223333332 23578999999999999999988654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00018 Score=62.94 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=47.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~ 269 (413)
+.+++..+|++|+|||+.+.......+...++... |. +++++++||+|++......+.+..-++.+
T Consensus 84 ~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~----------gi----~~iiv~iNK~D~~~~~~~~~~~~~~i~~~ 149 (204)
T d2c78a3 84 MITGAAQMDGAILVVSAADGPMPQTREHILLARQV----------GV----PYIVVFMNKVDMVDDPELLDLVEMEVRDL 149 (204)
T ss_dssp HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT----------TC----CCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc----------CC----CeEEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 34567789999999999886554444444444332 32 35788899999976421112233333344
Q ss_pred HHHcCCC-ccceEEEeEEE
Q 015085 270 AREDGIS-KITKLHFVSAV 287 (413)
Q Consensus 270 ~~~~g~~-~~~~V~~vSa~ 287 (413)
+...+.. ....++..|+.
T Consensus 150 l~~~~~~~~~i~~i~~sa~ 168 (204)
T d2c78a3 150 LNQYEFPGDEVPVIRGSAL 168 (204)
T ss_dssp HHHTTSCTTTSCEEECCHH
T ss_pred HHhcCCCcccceeeeeech
Confidence 4443331 12345555554
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.21 E-value=0.00028 Score=59.25 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=57.0
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...+|++++|+|..+.. + ...+.+++..... .... ...|+++|+||+|+... ....+..++|. +.
T Consensus 74 ~~~~~~~ilv~d~~~~~-s-~~~~~~~~~~~~~----~~~~----~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~----~~ 139 (171)
T d2erya1 74 MRTGEGFLLVFSVTDRG-S-FEEIYKFQRQILR----VKDR----DEFPMILIGNKADLDHQRQVTQEEGQQLA----RQ 139 (171)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHHH----HHTS----SCCSEEEEEECTTCTTSCSSCHHHHHHHH----HH
T ss_pred ccccceEEEeecccccc-c-hhhHHHHhHHHHh----hccc----CCCCEEEEEeccchhhhccchHHHHHHHH----HH
Confidence 44589999999998742 2 2233333322110 0001 12489999999998644 33445555554 33
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ...+.+||++|.|+++++..|.+.
T Consensus 140 ~~----~~~~e~Sak~~~~i~e~f~~l~~~ 165 (171)
T d2erya1 140 LK----VTYMEASAKIRMNVDQAFHELVRV 165 (171)
T ss_dssp TT----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cC----CEEEEEcCCCCcCHHHHHHHHHHH
Confidence 44 256789999999999998887554
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00037 Score=58.23 Aligned_cols=92 Identities=25% Similarity=0.228 Sum_probs=58.2
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
.....+|++++|+|..+.. + ...+..++..... ..... .++++|.||+|+... ....++.+.|.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~-S-f~~~~~~~~~~~~----~~~~~-----~~~ilvgnK~Dl~~~~~v~~~e~~~~a---- 135 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDED-S-FQKVKNWVKELRK----MLGNE-----ICLCIVGNKIDLEKERHVSIQEAESYA---- 135 (167)
T ss_dssp CSSTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH----HHGGG-----SEEEEEEECGGGGGGCCSCHHHHHHHH----
T ss_pred hhccCCceeEEEEeCCchh-H-HHhhhhhhhhccc----ccccc-----cceeeeccccccccccccchHHHHHHH----
Confidence 3566789999999998743 2 2333333332100 00111 378999999998643 34445555553
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ...+.+||++|.|+++++..|.+.
T Consensus 136 ~~~~----~~~~e~Sak~~~~v~e~F~~l~~~ 163 (167)
T d1z08a1 136 ESVG----AKHYHTSAKQNKGIEELFLDLCKR 163 (167)
T ss_dssp HHTT----CEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHcC----CeEEEEecCCCcCHHHHHHHHHHH
Confidence 3344 257789999999999998877543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00032 Score=59.18 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=53.7
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCCh-HHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP-TRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~-~~l~~~~~~~~~~ 272 (413)
...++++++|+|..+.. + ...+.+++.... .+ .. ...|+++|+||+|+....... ..... ..+.
T Consensus 74 ~~~~~~~i~v~d~~~~~-S-~~~~~~~~~~i~-----~~--~~--~~~piilvgnK~Dl~~~~~~~~~~~~~----~~~~ 138 (175)
T d2f9la1 74 YRGAVGALLVYDIAKHL-T-YENVERWLKELR-----DH--AD--SNIVIMLVGNKSDLRHLRAVPTDEARA----FAEK 138 (175)
T ss_dssp HTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HH--SC--TTCEEEEEEECTTCGGGCCSCHHHHHH----HHHH
T ss_pred hhccCeEEEEEECCCcc-c-chhHHHHHHHHH-----Hh--cC--CCCcEEEEEeeecccccccchHHHHHH----hhcc
Confidence 46789999999998742 2 222333332210 00 10 123899999999997542222 22222 2333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ ..++.+||++|.|++++++.+.+
T Consensus 139 ~~----~~~~e~Sa~~g~~i~e~f~~l~~ 163 (175)
T d2f9la1 139 NN----LSFIETSALDSTNVEEAFKNILT 163 (175)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHHH
T ss_pred cC----ceEEEEecCCCcCHHHHHHHHHH
Confidence 33 46888999999999988776643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=4.8e-05 Score=66.75 Aligned_cols=67 Identities=25% Similarity=0.200 Sum_probs=39.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCC--CCCCcccccccccccccCC-----CCCeeeeEeeccccc-cccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAG--RGGDGEEKNIVSHLTEAPV-----PGTTLGIVRVEGVLP-AQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~--~G~~~~~~~~v~~~t~s~~-----pgtT~~~i~~~~~l~-~~~~liDtpGl~ 379 (413)
++.++|..++|||||+++|+...... .|.+. ...+.... .|+|++.....+.+. ....++||||..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~------~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~ 78 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVK------DYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 78 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCC------CHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhhhccCCcchh------hhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCch
Confidence 57789999999999999997543110 11111 01111222 377765544333333 357899999975
Q ss_pred C
Q 015085 380 H 380 (413)
Q Consensus 380 ~ 380 (413)
.
T Consensus 79 d 79 (204)
T d2c78a3 79 D 79 (204)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.00029 Score=58.97 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC----CCChHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS----SLSPTRFEHWVRQ 268 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~----~~~~~~l~~~~~~ 268 (413)
.+..+|.+++|+|..+.. ++ ..+..+.... .. .. ....++++|+||+|+... ....++..+|.+
T Consensus 72 ~~~~~~~~ilv~d~~~~~-s~-~~~~~~~~~~----~~-~~----~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~- 139 (170)
T d1ek0a_ 72 YYRNAQAALVVYDVTKPQ-SF-IKARHWVKEL----HE-QA----SKDIIIALVGNKIDMLQEGGERKVAREEGEKLAE- 139 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-HH-HHHHHHHHHH----HH-HS----CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHH-
T ss_pred HHhccceEEEEEeCCccc-ch-hhhhhhhhhh----cc-cc----ccccceeeeecccccccccchhhhhHHHHHHHHH-
Confidence 466789999999998742 22 2233332211 00 01 122489999999998643 233345555543
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..+ ..++.+||++|.|+++++..|.+
T Consensus 140 ---~~~----~~~~e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 140 ---EKG----LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp ---HHT----CEEEECCTTTCTTHHHHHHHHHT
T ss_pred ---HcC----CEEEEecCCCCcCHHHHHHHHHH
Confidence 333 35788999999999999887744
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.15 E-value=0.00053 Score=57.50 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=56.5
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...++.+++|+|+.|.. + ...+..++..... .. +. ...|+++|+||+|+... ....++.++|.+ .
T Consensus 73 ~~~~~~~llv~d~~d~~-S-f~~~~~~~~~i~~-----~~-~~--~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~----~ 138 (169)
T d1x1ra1 73 MRTGDGFLIVYSVTDKA-S-FEHVDRFHQLILR-----VK-DR--ESFPMILVANKVDLMHLRKVTRDQGKEMAT----K 138 (169)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HH-TS--SCCCEEEEEECTTCSTTCCSCHHHHHHHHH----H
T ss_pred hhhccEEEEecccccch-h-hhccchhhHHHHh-----hc-cc--cCccEEEEecccchhhhceeehhhHHHHHH----H
Confidence 34579999999998742 2 2223333332100 00 11 12489999999999755 345556666644 3
Q ss_pred cCCCccceEEEeEEEee-cCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKN-WGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~-~Gi~~Ll~~I~~l 302 (413)
.+ ...+.+||+++ .|+++++..+.+.
T Consensus 139 ~~----~~~~e~Sak~~~~nV~~~F~~l~~~ 165 (169)
T d1x1ra1 139 YN----IPYIETSAKDPPLNVDKTFHDLVRV 165 (169)
T ss_dssp HT----CCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred cC----CEEEEEcCCCCCcCHHHHHHHHHHH
Confidence 33 25788999876 4999988877543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.00019 Score=60.00 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|.+|||||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999885
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=97.09 E-value=0.00026 Score=59.31 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=53.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHHc
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~~ 273 (413)
...++.+++|+|..|... +........... . .... ...|+++|+||+|+.... ....+.+... ...
T Consensus 80 ~~~~~~~i~v~d~~d~~~-~~~~~~~~~~~~-~---~~~~-----~~~p~iiv~nK~Dl~~~~-~~~~i~~~~~---~~~ 145 (177)
T d1zj6a1 80 YTNTEFVIVVVDSTDRER-ISVTREELYKML-A---HEDL-----RKAGLLIFANKQDVKECM-TVAEISQFLK---LTS 145 (177)
T ss_dssp HTTCCEEEEEEETTCTTT-HHHHHHHHHHHH-T---SGGG-----TTCEEEEEEECTTSTTCC-CHHHHHHHHT---GGG
T ss_pred hccceeeeeecccccccc-hhhhhhhhhhhh-h---cccc-----cceEEEEEEEcccccccC-cHHHHHHHHH---HHh
Confidence 456899999999987542 221111111000 0 0001 124899999999985442 2233333221 111
Q ss_pred CCCccceEEEeEEEeecCcchhccchhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
-......++.+||++|.|++++++.|.+
T Consensus 146 ~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~ 173 (177)
T d1zj6a1 146 IKDHQWHIQACCALTGEGLCQGLEWMMS 173 (177)
T ss_dssp CCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred hHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 1112246889999999999999988754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00044 Score=58.69 Aligned_cols=93 Identities=24% Similarity=0.203 Sum_probs=53.4
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCC-------------C
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL-------------S 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~-------------~ 258 (413)
..+..+|.+++|+|+.+.. ++ ..+..+.... ......+ .|+++|+||+|+..... .
T Consensus 72 ~~~~~~~~~ilv~d~~~~~-sf-~~i~~~~~~~----~~~~~~~-----~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~ 140 (183)
T d1mh1a_ 72 LSYPQTDVSLICFSLVSPA-SF-ENVRAKWYPE----VRHHCPN-----TPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (183)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHH----HHHHSTT-----SCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred hcccccceeeeeeccchHH-HH-HHHHHHHHHH----HHHhCCC-----CcEEEEeecccchhhhhhhhhhhhccccchh
Confidence 3467799999999998642 22 2222211111 1111112 38999999999864310 0
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
..... .+++..+ ....+.+||++|+|++++++.+.+.
T Consensus 141 ~~~~~----~~a~~~~---~~~~~E~SAk~~~~V~e~F~~l~~~ 177 (183)
T d1mh1a_ 141 YPQGL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIRA 177 (183)
T ss_dssp HHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred hHHHH----HHHHHcC---CceEEEcCCCCCcCHHHHHHHHHHH
Confidence 01111 1223332 1356789999999999998877543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00047 Score=57.98 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHHc
Q 015085 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (413)
Q Consensus 195 ~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~~ 273 (413)
..++++++|+|..+.. + ...+.+++.... ... +. ...|+++|+||+|+... ....+..+.|. +..
T Consensus 76 ~~~~~~i~v~d~~~~~-s-~~~~~~~~~~i~-----~~~-~~--~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~----~~~ 141 (173)
T d2fn4a1 76 RAGHGFLLVFAINDRQ-S-FNEVGKLFTQIL-----RVK-DR--DDFPVVLVGNKADLESQRQVPRSEASAFG----ASH 141 (173)
T ss_dssp HHCSEEEEEEETTCHH-H-HHHHHHHHHHHH-----HHH-TS--SCCCEEEEEECGGGGGGCCSCHHHHHHHH----HHT
T ss_pred ccceeeeeeccccccc-c-cchhhhhhHHHH-----HHh-cc--CCCceEEEEEeechhhccccchhhhhHHH----Hhc
Confidence 3579999999998742 2 223334332210 011 11 22489999999998643 22334444443 334
Q ss_pred CCCccceEEEeEEEeecCcchhccchhhh
Q 015085 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 274 g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+ ...+.+||++|.|++++++.+.+.
T Consensus 142 ~----~~~~e~Sak~g~gv~e~f~~l~~~ 166 (173)
T d2fn4a1 142 H----VAYFEASAKLRLNVDEAFEQLVRA 166 (173)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHH
T ss_pred C----CEEEEEeCCCCcCHHHHHHHHHHH
Confidence 3 356789999999999998887554
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.00029 Score=58.87 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=54.9
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~ 272 (413)
...++++++|+|+.+.. + ...+..++..... .. +. ...|+++|.||+|+.... ...+....+. +.
T Consensus 72 ~~~~~~~ilv~d~~~~~-s-f~~~~~~~~~~~~-----~~-~~--~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~----~~ 137 (167)
T d1c1ya_ 72 MKNGQGFALVYSITAQS-T-FNDLQDLREQILR-----VK-DT--EDVPMILVGNKCDLEDERVVGKEQGQNLA----RQ 137 (167)
T ss_dssp HHHCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----HH-CC--SCCCEEEEEECTTCGGGCCSCHHHHHHHH----HH
T ss_pred ccccceeEEeeeccchh-h-hHhHHHHHHHHHH-----hc-CC--CCCeEEEEEEecCcccccccchhHHHHHH----HH
Confidence 34579999999998742 2 2334444332110 00 11 124899999999997542 2333334433 22
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+ . ...+.+||++|.|++++++.|.+
T Consensus 138 ~~--~-~~~~e~Sak~g~gv~e~F~~l~~ 163 (167)
T d1c1ya_ 138 WC--N-CAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp TT--S-CEEEECBTTTTBSHHHHHHHHHH
T ss_pred hC--C-CEEEEEcCCCCcCHHHHHHHHHH
Confidence 22 1 35678999999999999887743
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.06 E-value=0.00062 Score=56.43 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~ 271 (413)
.+..+|.+++|+|..+.. + ...+.+++... .... . ....|+++|+||+||... ....+..++|. +
T Consensus 72 ~~~~~d~~ilv~d~~~~~-s-~~~~~~~~~~i-----~~~~-~--~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~----~ 137 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMA-S-FHSLPAWIEEC-----KQHL-L--ANDIPRILVGNKCDLRSAIQVPTDLAQKFA----D 137 (165)
T ss_dssp HHTTCCEEEEEEETTCHH-H-HHTHHHHHHHH-----HHHC-C--CSCCCEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred eecCCCceEEEEEeehhh-h-hhhhhhhhHHH-----Hhhc-c--CCCCeEEEEeccccchhccchhHHHHHHHH----H
Confidence 456799999999998752 2 22233333221 0000 1 122489999999999754 34445555554 3
Q ss_pred HcCCCccceEEEeEEEeec---Ccchhccch
Q 015085 272 EDGISKITKLHFVSAVKNW---GLKSLIDDV 299 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~---Gi~~Ll~~I 299 (413)
..+ ..++.+||+++. |++++++.|
T Consensus 138 ~~~----~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 138 THS----MPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp HTT----CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred HCC----CEEEEEecccCCcCcCHHHHHHHh
Confidence 444 257889998754 666666543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.05 E-value=0.00033 Score=60.62 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
.|.++|..|||||||||.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 477899999999999999986
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00025 Score=59.53 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999985
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=97.01 E-value=0.00033 Score=58.18 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..||||||||+.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5788999999999999999753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00054 Score=57.09 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=54.3
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~~~ 272 (413)
...+|++++|+|..+.. + ...+..++..... . . ....|+++|.||+|+.... ...+..+.+ ++.
T Consensus 74 ~~~~d~~ilv~d~~~~~-s-~~~~~~~~~~~~~-----~--~--~~~~~iilvgnK~Dl~~~~~~~~~~~~~~----~~~ 138 (166)
T d1z0fa1 74 YRGAAGALMVYDITRRS-T-YNHLSSWLTDARN-----L--T--NPNTVIILIGNKADLEAQRDVTYEEAKQF----AEE 138 (166)
T ss_dssp HHTCSEEEEEEETTCHH-H-HHTHHHHHHHHHH-----H--S--CTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHH
T ss_pred hcCCcEEEEEeccCchH-H-HHHHHHHHHHHHh-----h--c--cccceEEEEcccccchhhcccHHHHHHHH----HHH
Confidence 45689999999998742 2 2233333321100 0 1 1224899999999986442 233344443 333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~ 300 (413)
.+ ..++.+||++|.|++++++.|.
T Consensus 139 ~~----~~~~e~Saktg~~v~e~f~~i~ 162 (166)
T d1z0fa1 139 NG----LLFLEASAKTGENVEDAFLEAA 162 (166)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 43 3578899999999999987764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.00 E-value=0.0007 Score=57.36 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-------------CCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------------~~~ 258 (413)
.....+|++++|+|+.+.. ++ ..+.++.... ..... ...|+++|+||+|+... ...
T Consensus 69 ~~~~~~~~~ilv~d~~~~~-Sf-~~~~~~~~~~----~~~~~-----~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~ 137 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPE-TL-DSVLKKWKGE----IQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 137 (179)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHH----HHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred chhhhhhhhheeeecccCC-CH-HHHHHHHHHH----HhccC-----CcceEEEEEecccccccchhhHHHhhhhcCcch
Confidence 3467899999999998742 22 2222222111 01111 12499999999998532 122
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeec-Ccchhccchhhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNW-GLKSLIDDVVDL 302 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~-Gi~~Ll~~I~~l 302 (413)
.++...|. +..+ ....+.+||++|+ |++++++.+...
T Consensus 138 ~~e~~~~a----~~~~---~~~y~E~SAk~~~n~i~~~F~~~~~~ 175 (179)
T d1m7ba_ 138 YDQGANMA----KQIG---AATYIECSALQSENSVRDIFHVATLA 175 (179)
T ss_dssp HHHHHHHH----HHHT---CSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHhC---CCeEEEEeCCCCCcCHHHHHHHHHHH
Confidence 23333333 3333 1346779999998 589888776443
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0004 Score=58.32 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=56.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQ 268 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~ 268 (413)
.......++.+++|+|..+.. + ...+..++.... ... . ...|+++|+||+|+.... ........
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~-----~~~-~---~~~piivv~nK~D~~~~~~~~~~~~~~---- 135 (174)
T d2bmea1 71 TRSYYRGAAGALLVYDITSRE-T-YNALTNWLTDAR-----MLA-S---QNIVIILCGNKKDLDADREVTFLEASR---- 135 (174)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-H-HHTHHHHHHHHH-----HHS-C---TTCEEEEEEECGGGGGGCCSCHHHHHH----
T ss_pred HHHHhhhCCEEEEEEecccch-h-HHHHhhhhcccc-----ccc-C---CceEEEEEEecccccchhchhhhHHHH----
Confidence 345577899999999998742 1 222333322110 000 1 124999999999986432 22223333
Q ss_pred HHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 269 ~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+.+..+ ..++.+||++|.|+++++..+.+
T Consensus 136 ~~~~~~----~~~~e~Sak~~~gi~e~f~~l~~ 164 (174)
T d2bmea1 136 FAQENE----LMFLETSALTGENVEEAFVQCAR 164 (174)
T ss_dssp HHHHTT----CEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHhCC----CEEEEeeCCCCcCHHHHHHHHHH
Confidence 333333 35788999999999998877643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.97 E-value=0.0002 Score=60.21 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|..|||||||+|.|.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3688899999999999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.96 E-value=0.00037 Score=58.36 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 478899999999999999885
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.0014 Score=54.89 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=51.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
..+..++.+++|+|+++.. + ...+..+..... .. .. ...++++|.||.|+.... ........+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~~----~~---~~--~~~~iilv~~k~D~~~~~~~~~~~~~~~~---- 138 (173)
T d2fu5c1 74 AYYRGAMGIMLVYDITNEK-S-FDNIRNWIRNIE----EH---AS--ADVEKMILGNKCDVNDKRQVSKERGEKLA---- 138 (173)
T ss_dssp TTTTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH----HH---SC--TTCEEEEEEEC--CCSCCCSCHHHHHHHH----
T ss_pred HhccCCCEEEEEEECCChh-h-HHHHHHHHHHhh----hh---cc--CCceEEEEEecccchhhcccHHHHHHHHH----
Confidence 3467789999999998743 2 122333222110 00 11 224899999999987653 2223333333
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
+..+ ..++.+||++|.|++++++.|.+.
T Consensus 139 ~~~~----~~~~e~Sa~~g~gv~e~f~~l~~~ 166 (173)
T d2fu5c1 139 LDYG----IKFMETSAKANINVENAFFTLARD 166 (173)
T ss_dssp HHHT----CEEEECCC---CCHHHHHHHHHHH
T ss_pred HhcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333 357889999999999998877543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.0013 Score=56.38 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=55.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-CChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-~~~~~l~~~~~~~~ 270 (413)
.....++.+++|+|..+... ...+.++.... ... . ....|+++|.||+|+.... ...+....|.
T Consensus 74 ~~~~~a~~~i~v~d~t~~~s--~~~~~~~~~~~-----~~~--~--~~~~~iilv~nK~D~~~~~~~~~~~~~~~~---- 138 (194)
T d2bcgy1 74 SYYRGSHGIIIVYDVTDQES--FNGVKMWLQEI-----DRY--A--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA---- 138 (194)
T ss_dssp GGGTTCSEEEEEEETTCHHH--HHHHHHHHHHH-----HHH--S--CTTCEEEEEEECTTCTTTCCSCHHHHHHHH----
T ss_pred HHhccCCEEEEEEeCcchhh--hhhHhhhhhhh-----hhc--c--cCCceEEEEEeccccccccchhHHHHhhhh----
Confidence 34567899999999976421 12222222111 000 1 1224899999999997643 3333333433
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+..+ ...+.+||++|+|++++++.+.+
T Consensus 139 ~~~~----~~~~e~SAk~g~gi~e~f~~l~~ 165 (194)
T d2bcgy1 139 DANK----MPFLETSALDSTNVEDAFLTMAR 165 (194)
T ss_dssp HHTT----CCEEECCTTTCTTHHHHHHHHHH
T ss_pred hccC----cceEEEecCcCccHHHHHHHHHH
Confidence 2233 35788999999999998877743
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.0014 Score=55.91 Aligned_cols=92 Identities=24% Similarity=0.242 Sum_probs=54.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------------CC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~-------------~~ 258 (413)
.....+|.+++|+|+.+.. ++ ..+.++...... ....+ .|+++|.||+||.... ..
T Consensus 70 ~~~~~~~~~ilv~d~~~~~-Sf-~~~~~~~~~~~~----~~~~~-----~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~ 138 (191)
T d2ngra_ 70 LSYPQTDVFLVCFSVVSPS-SF-ENVKEKWVPEIT----HHCPK-----TPFLLVGTQIDLRDDPSTIEKLAKNKQKPIT 138 (191)
T ss_dssp GGCTTCSEEEEEEETTCHH-HH-HHHHHTHHHHHH----HHCTT-----CCEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred hcccccceeecccccchHH-HH-HHHHHHHHHHHh----hcCCC-----CceEEEeccccccccchhhhhhhhccccccc
Confidence 3466899999999998753 22 233332221111 11112 3899999999986431 12
Q ss_pred hHHHHHHHHHHHHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 259 ~~~l~~~~~~~~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.+..+.| ++..+. ...+.+||++|.|++++++.+..
T Consensus 139 ~~~~~~~----~~~~~~---~~~~e~SAk~~~~V~e~f~~l~~ 174 (191)
T d2ngra_ 139 PETAEKL----ARDLKA---VKYVECSALTQKGLKNVFDEAIL 174 (191)
T ss_dssp HHHHHHH----HHHTTC---SCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHH----HHHcCC---CeEEEEeCCCCcCHHHHHHHHHH
Confidence 2233333 333321 24678999999999999876643
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.90 E-value=0.00044 Score=57.84 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=25.9
Q ss_pred hccchhhhcccC-CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 295 LIDDVVDLAGKR-GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 295 Ll~~I~~l~~~~-g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
|+..++.+...+ -++.++|.+|||||||++.|.+.
T Consensus 3 ~~~~~~~~~~~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 3 LFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp HHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence 444555554433 46788999999999999999863
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.00015 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHcc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+|.++|.+|||||||||+|++.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46888999999999999999864
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=96.86 E-value=0.00016 Score=62.92 Aligned_cols=72 Identities=29% Similarity=0.342 Sum_probs=40.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCCCCcccccccccccccCCCCCeeeeEeecccc-ccccccccccccc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLL 379 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G~~~~~~~~v~~~t~s~~pgtT~~~i~~~~~l-~~~~~liDtpGl~ 379 (413)
++.++|..++|||||+++|++...-..+................-.|.|++.....+.. .....++||||..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~ 77 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchH
Confidence 57789999999999999998654221111110000111122223356776653332222 3457899999864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00057 Score=57.61 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=58.4
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
....++.+++|+|+.+... ...+..++... .........+++++.||.|............++ .+.
T Consensus 76 ~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i--------~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~----~~~ 141 (177)
T d1x3sa1 76 YYRGAQGVILVYDVTRRDT--FVKLDNWLNEL--------ETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----ARK 141 (177)
T ss_dssp HHTTCCEEEEEEETTCHHH--HHTHHHHHHHH--------TTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH----HHH
T ss_pred HHhcCCEEEEEEECCCccc--cccchhhhhhh--------cccccccceeeEEEeeccccccccccHHHHHHH----HHH
Confidence 3567899999999887321 22333333221 011111234899999999987665555555444 333
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.+ ..++.+||++|.|++++++.+.+.
T Consensus 142 ~~----~~~~e~Sa~tg~gv~e~f~~l~~~ 167 (177)
T d1x3sa1 142 HS----MLFIEASAKTCDGVQCAFEELVEK 167 (177)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44 357889999999999998877543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00084 Score=56.06 Aligned_cols=90 Identities=19% Similarity=0.095 Sum_probs=54.1
Q ss_pred cCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHHHH
Q 015085 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 194 ~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~~~ 272 (413)
...++.+++|+|..+... ...+.++.... ... . . ....|+++|.||+||... ....++.++|.+ .
T Consensus 70 ~~~~~~~ilv~d~~~~~s--~~~~~~~~~~~-~~~---~--~--~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~----~ 135 (168)
T d2atva1 70 MRWGEGFVLVYDITDRGS--FEEVLPLKNIL-DEI---K--K--PKNVTLILVGNKADLDHSRQVSTEEGEKLAT----E 135 (168)
T ss_dssp HHHCSEEEEEEETTCHHH--HHTHHHHHHHH-HHH---H--T--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hcccccceeecccCCccc--hhhhhhhcccc-ccc---c--c--ccCcceeeeccchhhhhhccCcHHHHHHHHH----H
Confidence 345799999999987532 12222221110 000 0 1 122489999999999643 344555555543 3
Q ss_pred cCCCccceEEEeEEEeecC-cchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWG-LKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~G-i~~Ll~~I~~ 301 (413)
.+ ...+.+||++|.| +++++..+.+
T Consensus 136 ~~----~~~~e~Saktg~gnV~e~F~~l~~ 161 (168)
T d2atva1 136 LA----CAFYECSACTGEGNITEIFYELCR 161 (168)
T ss_dssp HT----SEEEECCTTTCTTCHHHHHHHHHH
T ss_pred hC----CeEEEEccccCCcCHHHHHHHHHH
Confidence 33 3578899999986 8888876644
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=96.77 E-value=0.0012 Score=59.15 Aligned_cols=96 Identities=20% Similarity=0.207 Sum_probs=54.7
Q ss_pred HhhhcCCCcEEEEEEeCCCCCC-------CchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH
Q 015085 190 LMSASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF 262 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~-------s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l 262 (413)
..+.+..+|.+++|||+.+... ..-.+...++.. .+. +.+++++||+|+........++
T Consensus 119 ~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----------~~i----~~iiv~iNKmD~~~~~~~e~~~ 184 (245)
T d1r5ba3 119 MINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------QGI----NHLVVVINKMDEPSVQWSEERY 184 (245)
T ss_dssp ----TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------TTC----SSEEEEEECTTSTTCSSCHHHH
T ss_pred hhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----------cCC----CeEEEEEEcCCCCccchhHHHH
Confidence 3456678999999999986421 011122222221 132 3689999999997654344444
Q ss_pred HHHHH---HHHHHcCCCc---cceEEEeEEEeecCcchhccch
Q 015085 263 EHWVR---QRAREDGISK---ITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 263 ~~~~~---~~~~~~g~~~---~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
++.+. ..++..+... -..++.+||.+|.|+.++++..
T Consensus 185 ~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~ 227 (245)
T d1r5ba3 185 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS 227 (245)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT
T ss_pred HHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhcc
Confidence 43322 2223222111 1257889999999999988765
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00092 Score=57.25 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 478899999999999999884
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.67 E-value=0.00069 Score=55.21 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=53.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
.....++.+++++|..+.. ++ ..+..++....... . ....++++|.||.|+.... ....+... ...
T Consensus 63 ~~~~~~~~~i~~~d~~~~~-~~-~~~~~~~~~~~~~~------~--~~~~~i~~v~~k~d~~~~~-~~~~i~~~---~~~ 128 (160)
T d1r8sa_ 63 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAED------E--LRDAVLLVFANKQDLPNAM-NAAEITDK---LGL 128 (160)
T ss_dssp HHTTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTCG------G--GTTCEEEEEEECTTSTTCC-CHHHHHHH---TTG
T ss_pred hhhccceeEEEEEEecChH-HH-HHHHHHHHHHHHhh------c--ccCceEEEEeecccccccc-cHHHHHHH---HHH
Confidence 4566789999999998743 22 22222222110000 0 0124899999999987542 11222111 111
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.........++.+||++|+|++++++.|.+
T Consensus 129 ~~~~~~~~~~~~~SAktg~gi~e~~~~l~~ 158 (160)
T d1r8sa_ 129 HSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (160)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHhhCCCEEEEeECCCCCCHHHHHHHHHh
Confidence 111011235788999999999999988743
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00086 Score=55.99 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999874
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00064 Score=57.17 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999885
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.0014 Score=54.27 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=59.3
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.+..++.+++|+|..+.. + ...+..+.... ... . ....+++++.||.|+.......+...+|.. .
T Consensus 71 ~~~~~~~~i~v~d~~~~~-s-~~~~~~~~~~~-----~~~--~--~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~----~ 135 (166)
T d1g16a_ 71 YYRGAMGIILVYDITDER-T-FTNIKQWFKTV-----NEH--A--NDEAQLLLVGNKSDMETRVVTADQGEALAK----E 135 (166)
T ss_dssp HHTTEEEEEEEEETTCHH-H-HHTHHHHHHHH-----HHH--S--CTTCEEEEEEECTTCTTCCSCHHHHHHHHH----H
T ss_pred HHhcCCEEEEEEECCCcc-C-HHHHHhhhhhh-----hcc--c--cCcceeeeecchhhhhhhhhhHHHHHHHHH----h
Confidence 456789999999998743 1 12222222111 000 0 122378999999999876655565555543 3
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.+ ..++.+||++++|++++++.|.+..
T Consensus 136 ~~----~~~~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 136 LG----IPFIESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp HT----CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cC----CeEEEECCCCCCCHHHHHHHHHHHH
Confidence 33 3688999999999999998876544
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00092 Score=56.26 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..||||||||+.|.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588899999999999999885
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.60 E-value=0.00034 Score=58.56 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=21.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+..++.+||.+||||||||+.|.+..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578889999999999999998643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00077 Score=56.07 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999985
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.002 Score=53.57 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=56.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC-CCChHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-~~~~~~l~~~~~~~~ 270 (413)
.....+|.+++|+|..+.. + ...+..+.... .. . . ....++++|.||+|+... ....+....+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~----~~-~--~--~~~~~iilv~~k~d~~~~~~v~~~~~~~~~---- 139 (170)
T d2g6ba1 75 AYYRDAHALLLLYDVTNKA-S-FDNIQAWLTEI----HE-Y--A--QHDVALMLLGNKVDSAHERVVKREDGEKLA---- 139 (170)
T ss_dssp CCGGGCSEEEEEEETTCHH-H-HHTHHHHHHHH----HH-H--S--CTTCEEEEEEECCSTTSCCCSCHHHHHHHH----
T ss_pred HhhcCCceeEEEecCCccc-c-hhhhhhhhhhh----hh-c--c--CCCceEEEEEeeechhhcccccHHHHHHHH----
Confidence 3456789999999998642 1 12222222111 00 0 0 122489999999998765 33444444443
Q ss_pred HHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 271 ~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
+..+ ..++.+||++|.|++++++.|.+
T Consensus 140 ~~~~----~~~~e~Sak~g~gi~e~f~~l~~ 166 (170)
T d2g6ba1 140 KEYG----LPFMETSAKTGLNVDLAFTAIAK 166 (170)
T ss_dssp HHHT----CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHcC----CEEEEEeCCCCcCHHHHHHHHHH
Confidence 3333 36889999999999999887743
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.52 E-value=0.0012 Score=54.82 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.|.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999975
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.49 E-value=0.00087 Score=54.95 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=55.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~ 271 (413)
......+.+++++|..+.... . ...+.+..... .... ...++++|.||.|+..... ...+.. ....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~----~~~~----~~~~i~iv~nk~Dl~~~~~-~~~i~~---~~~~ 133 (169)
T d1upta_ 68 CYYSNTDAVIYVVDSCDRDRI-G-ISKSELVAMLE----EEEL----RKAILVVFANKQDMEQAMT-SSEMAN---SLGL 133 (169)
T ss_dssp GGCTTCSEEEEEEETTCCTTH-H-HHHHHHHHHHT----CGGG----TTCEEEEEEECTTSTTCCC-HHHHHH---HHTG
T ss_pred hhhhhhhhhhhhhhhhhcchh-h-hccchhhhhhh----hhcc----ccceEEEEEeecccccccc-HHHHHH---HHHH
Confidence 345567899999998865432 2 11111111000 0001 2248999999999975421 222221 1111
Q ss_pred HcCCCccceEEEeEEEeecCcchhccchhhhc
Q 015085 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 272 ~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
.........++.+||++|+|++++++.|.+..
T Consensus 134 ~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 134 PALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165 (169)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111224688999999999999998886544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.0014 Score=54.24 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.44 E-value=0.00064 Score=55.41 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|.+|||||||+|.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4778999999999999999854
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.39 E-value=0.0015 Score=54.12 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999884
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.37 E-value=0.0012 Score=60.65 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++||.-++|||||||+|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58889999999999999999865
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.36 E-value=0.0016 Score=59.51 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|.-++|||||||+|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58889999999999999999865
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.36 E-value=0.00076 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|.+|||||||||.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999998643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=96.33 E-value=0.0012 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..++|||||+|+|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 46779999999999999999754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0023 Score=53.29 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 478899999999999999885
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.28 E-value=0.0012 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
-++.++|.+|||||||++.|.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3678899999999999999864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0021 Score=53.67 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999874
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0027 Score=53.08 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999884
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.14 E-value=0.0012 Score=55.26 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|.+||||||||+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 678899999999999999874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.12 E-value=0.0014 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=19.8
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
|.+++ +||+|||||||++.|....
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 44545 9999999999999998655
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.11 E-value=0.0044 Score=52.11 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999885
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=96.04 E-value=0.0027 Score=57.61 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..|+|||||+.+|+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5788999999999999999743
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0015 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|.+|||||||++.|+..+
T Consensus 5 i~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5669999999999999998543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.00053 Score=57.59 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=8.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.|++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478899999999999999884
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.99 E-value=0.0015 Score=61.07 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.3
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHccCcCC
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~~~~~ 333 (413)
++...++.....+.++.+.|++|+|||||+|+|++..++.
T Consensus 154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 154 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3444444444556678889999999999999999888653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0034 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0012 Score=55.29 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999998864
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.89 E-value=0.02 Score=49.96 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=53.2
Q ss_pred HhhhcCCCcEEEEEEeCCCCCCC----chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHH---
Q 015085 190 LMSASGARSVVLMVVDAADFDGS----FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF--- 262 (413)
Q Consensus 190 ~~~~~~~~dlVl~VvD~~d~~~s----~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l--- 262 (413)
....+.-+|.+|+|||+.+.... ......+.+... ...+. +++|+++||+|+.........+
T Consensus 98 ~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-------~~~~~----~~iIv~iNK~D~~~~~~~~~~~~~v 166 (224)
T d1jnya3 98 MITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-------KTMGL----DQLIVAVNKMDLTEPPYDEKRYKEI 166 (224)
T ss_dssp HHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-------HHTTC----TTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred HHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-------HHhCC----CceEEEEEcccCCCccccHHHHHHH
Confidence 34567789999999999875211 011222221110 00122 3789999999998643333322
Q ss_pred HHHHHHHHHHcCCC-ccceEEEeEEEeecCcchhcc
Q 015085 263 EHWVRQRAREDGIS-KITKLHFVSAVKNWGLKSLID 297 (413)
Q Consensus 263 ~~~~~~~~~~~g~~-~~~~V~~vSa~~~~Gi~~Ll~ 297 (413)
...+..+....+.. ....++.+||..|.|+...-+
T Consensus 167 ~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~s~ 202 (224)
T d1jnya3 167 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 202 (224)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHhHHHhcCCCcccCeEEEEEccCCCCcccccc
Confidence 22233333444331 123567899988887755443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0044 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999985
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0054 Score=54.54 Aligned_cols=103 Identities=10% Similarity=0.136 Sum_probs=56.7
Q ss_pred chhhHHHHHHHhhhcCCCcEEEEEEeCCCCCCC----chHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGS----FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~dlVl~VvD~~d~~~s----~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+|... ..+.+..+|.+|+|||+.+..+. ...+..+.+... ...|. +++|+++||+|+...
T Consensus 95 ~df~~~----~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-------~~~gv----~~iiv~iNKmD~~~~ 159 (239)
T d1f60a3 95 RDFIKN----MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-------FTLGV----RQLIVAVNKMDSVKW 159 (239)
T ss_dssp TTHHHH----HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-------HHTTC----CEEEEEEECGGGGTT
T ss_pred HHHHHH----HHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-------HHcCC----CeEEEEEECCCCCCC
Confidence 445543 34677889999999999753110 011111111100 11133 468899999999865
Q ss_pred CCChHHHH---HHHHHHHHHcCCCc-cceEEEeEEEeecCcchhccch
Q 015085 256 SLSPTRFE---HWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLIDDV 299 (413)
Q Consensus 256 ~~~~~~l~---~~~~~~~~~~g~~~-~~~V~~vSa~~~~Gi~~Ll~~I 299 (413)
+.+++. ..+..++...+... ...++.+|+..|.|+.+.....
T Consensus 160 --d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~~s~~~ 205 (239)
T d1f60a3 160 --DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNA 205 (239)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSC
T ss_pred --CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcceeccccC
Confidence 233332 23334454444321 1245789999888876655443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.83 E-value=0.0018 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.|+++|++|+|||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0037 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 578899999999999999874
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.0036 Score=52.71 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC---CCChHHHHHHHHHHHHH
Q 015085 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS---SLSPTRFEHWVRQRARE 272 (413)
Q Consensus 196 ~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~---~~~~~~l~~~~~~~~~~ 272 (413)
.+|++++|+|..+.. ++ ..+..+.... ..++ .......|+++|+||.|+-.. .....+.+.|.++
T Consensus 70 ~ad~~ilVfd~~~~~-Sf-~~~~~~~~~i-----~~~~-~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~---- 137 (175)
T d2bmja1 70 WADAVIFVFSLEDEN-SF-QAVSRLHGQL-----SSLR-GEGRGGLALALVGTQDRISASSPRVVGDARARALCAD---- 137 (175)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHC-C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT----
T ss_pred ccceeEEEeecccch-hh-hhhHHHHHHH-----HHHh-hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH----
Confidence 479999999998742 21 2233332211 0011 111123489999999997533 2233445555322
Q ss_pred cCCCccceEEEeEEEeecCcchhccchhh
Q 015085 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. ....+.+||+++.|+++++..+.+
T Consensus 138 ~~---~~~~~e~SAk~~~~v~~~F~~l~~ 163 (175)
T d2bmja1 138 MK---RCSYYETCATYGLNVDRVFQEVAQ 163 (175)
T ss_dssp ST---TEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred hC---CCeEEEeCCCCCcCHHHHHHHHHH
Confidence 21 134677899999999998776643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0043 Score=51.39 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999884
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0046 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|.+|||||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688899999999999999885
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.70 E-value=0.0025 Score=58.04 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|+|||||+.+|+-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 688899999999999999973
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0026 Score=51.43 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..|+++|++||||||+-+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368889999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0095 Score=47.88 Aligned_cols=99 Identities=13% Similarity=0.017 Sum_probs=54.3
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHH--
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR-- 269 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~-- 269 (413)
.....++.+++++|..+... ......+...... .......+++++.||.|+.... ....+.+.+...
T Consensus 63 ~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~i~i~~~k~d~~~~~-~~~~i~~~~~~~~~ 131 (166)
T d2qtvb1 63 DYFPEVNGIVFLVDAADPER--FDEARVELDALFN--------IAELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNT 131 (166)
T ss_dssp GGCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHT--------CTTTTTCCEEEEEECTTSSSCC-CHHHHHHHHTCSSC
T ss_pred hhhhheeeeeeeccccchhh--hhhhhHHHHhhhh--------hhccCCceEEEEeccccccccC-CHHHHHHHhhhhhh
Confidence 44567899999999987532 1222222211100 0001224899999999986432 223332221100
Q ss_pred --HHHcCCCccceEEEeEEEeecCcchhccchhh
Q 015085 270 --AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 270 --~~~~g~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
...........++.+||++|+|++++++.|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 132 TGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp CC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred hHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence 00011112236889999999999999988743
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.61 E-value=0.0095 Score=53.78 Aligned_cols=47 Identities=23% Similarity=0.126 Sum_probs=33.1
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLL 253 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl 253 (413)
.++..+|.+|+|||+.+.....-..+.+++... +. |.++++||+|..
T Consensus 86 ~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~----------~~-----p~~i~iNk~D~~ 132 (267)
T d2dy1a2 86 GALEAADAALVAVSAEAGVQVGTERAWTVAERL----------GL-----PRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT----------TC-----CEEEEEECGGGC
T ss_pred hhhcccCceEEEeeccCCccchhHHHHHhhhhc----------cc-----cccccccccccc
Confidence 345558999999999987654445555544432 33 899999999973
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0025 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.520 Sum_probs=21.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~ 332 (413)
.++++|++|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4778999999999999999977643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0032 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..||||||||+.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999863
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0067 Score=51.35 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999884
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0035 Score=58.49 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=24.1
Q ss_pred hhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHcc
Q 015085 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 294 ~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++++.+.......-.+.+.|++|||||||++.|...
T Consensus 42 ~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 344444333333334566999999999999999754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.02 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEEcCCCCcHHHHHHHHHccC
Q 015085 310 WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++|+.++|||||+|.|+|..
T Consensus 36 si~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 36 AIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEBTTSSHHHHHHHHTTCS
T ss_pred EEECCCCCCHHHHHHHHcCCC
Confidence 349999999999999999643
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0041 Score=51.53 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999885
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.28 E-value=0.0043 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 015085 309 VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g 328 (413)
++++|++|||||||.+.|..
T Consensus 5 Iii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45599999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0041 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+++++|..||||||||+.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4788999999999999998853
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0047 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=20.0
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
|.+++ +||+|||||||++.|+...
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 45555 9999999999999998654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.0043 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+++++|..|||||||++.+++.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5888999999999999999853
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.21 E-value=0.0035 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEcCCCCcHHHHHHHHHccCc
Q 015085 310 WAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.++|.+|||||||++.|+..+.
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999986553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.13 E-value=0.005 Score=51.82 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478899999999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.08 E-value=0.005 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+.++|+.|||||||++.|+...
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHH
Confidence 4559999999999999998543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0049 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|.+|||||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 477899999999999999875
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.08 E-value=0.0048 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|++||||||+.+.|+..+
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999765
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.005 Score=50.81 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588899999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.03 E-value=0.0099 Score=51.65 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.8
Q ss_pred ceEEEeEEEeecCcchhccchhh
Q 015085 279 TKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 279 ~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
..++.+||.+|.|+++|++.|.+
T Consensus 217 ~~~v~vSa~~geGi~~L~~~l~e 239 (244)
T d1yrba1 217 VRVLYLSAKTREGFEDLETLAYE 239 (244)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999988754
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.00 E-value=0.0067 Score=49.84 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=20.7
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
+|++++ +|++||||||+-+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356555 8999999999999998765
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0054 Score=50.91 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|.+||||||||+.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588899999999999999875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.006 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
+++++|..|||||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4778999999999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.0057 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..||||||||+.+++
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999885
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.94 E-value=0.0061 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+-+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999997654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.94 E-value=0.007 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-.++++|++||||||+.+.|...+
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357789999999999999998655
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.0059 Score=50.44 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0058 Score=51.67 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++||+|+||+||++.|+...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6669999999999999998543
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=94.89 E-value=0.0042 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..++|||||++.|+...
T Consensus 11 ~i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 11 RFLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 46779999999999999997543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.84 E-value=0.12 Score=43.28 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=36.3
Q ss_pred HHHHhhhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 187 ~~~~~~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
.+....+....+.+++++|+.+...++. .+.+++.............+ .|+++|+||+|+...
T Consensus 64 ~~~~~~~~~~~~~~i~~vd~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~-----~piiiv~NK~D~~~~ 126 (209)
T d1nrjb_ 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSITESSCENG-----IDILIACNKSELFTA 126 (209)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCH-HHHHHHHHHHHHHHHHSTTC-----CCEEEEEECTTSTTC
T ss_pred HHHHHHHhhhccccceEEEEecccccHH-HHHHHHHHHHHHHHHHHhcc-----CCeEEEEEeeccccc
Confidence 3444456667789999999987655543 23333321110000111112 389999999999765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.008 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+++ +|++||||||+.+.|...+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345666 9999999999999998755
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0067 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 477899999999999999884
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.78 E-value=0.0067 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999874
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0069 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|+++||+||||+||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999998654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0073 Score=50.27 Aligned_cols=23 Identities=48% Similarity=0.484 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..|||||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 57889999999999999998643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.70 E-value=0.0069 Score=53.08 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
|.++|..|+|||||+|+|++.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHhh
Confidence 777999999999999999874
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.62 E-value=0.0082 Score=49.23 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|+++|.+||||||+-++|+..+
T Consensus 9 I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5569999999999999998554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.55 E-value=0.0084 Score=50.88 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|.+|||||||.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4559999999999999998644
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.43 E-value=0.024 Score=46.52 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=52.8
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHHHHHHHH
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~~~~~~~ 272 (413)
.....+.+++++|..+... .. .....+...... ....+ .|++++.||.|+... .....+.+........
T Consensus 77 ~~~~~~~~~~~~d~~d~~~-~~-~~~~~~~~~~~~---~~~~~-----~~~li~~~K~D~~~~-~~~~~i~~~~~~~~~~ 145 (186)
T d1f6ba_ 77 YLPAINGIVFLVDCADHER-LL-ESKEELDSLMTD---ETIAN-----VPILILGNKIDRPEA-ISEERLREMFGLYGQT 145 (186)
T ss_dssp GGGGCSEEEEEEETTCGGG-HH-HHHHHHHHHHTC---GGGTT-----SCEEEEEECTTSTTC-CCHHHHHHHHTCTTTC
T ss_pred hhcccceeeeeeeccCccc-hH-HHHHHHHHhhcc---cccCC-----CceEEEEeccCcccc-CCHHHHHHHHhhcccc
Confidence 4456789999999887432 11 111111111000 00112 389999999998643 2333333332110000
Q ss_pred ----cC-----CCccceEEEeEEEeecCcchhccchhh
Q 015085 273 ----DG-----ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (413)
Q Consensus 273 ----~g-----~~~~~~V~~vSa~~~~Gi~~Ll~~I~~ 301 (413)
.. ......++.+||++|+|++++++.|.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~ 183 (186)
T d1f6ba_ 146 TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183 (186)
T ss_dssp CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred hhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 00 001125788999999999999987754
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.36 E-value=0.0067 Score=55.02 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+++|+||+||||+|.+|.-.
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 355999999999999998543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.36 E-value=0.01 Score=48.97 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|++.|++||||||+.+.|...+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999997654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.01 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578899999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0099 Score=49.14 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578899999999999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.30 E-value=0.0096 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|++.|++||||||+-+.|...+
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4447999999999999999876
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.0041 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+++|+||+||||+|.+|.-.
T Consensus 27 tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 445899999999999999643
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.29 E-value=0.01 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|+++||+||||+||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999997543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.18 E-value=0.011 Score=49.47 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.7
Q ss_pred EEcCCCCcHHHHHHHHHcc
Q 015085 311 AIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 311 ~vG~ng~GKSTLin~L~g~ 329 (413)
+.|++|||||||-+.|...
T Consensus 27 I~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 27 IDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4899999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.11 E-value=0.01 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++.|++|+||||++++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 36779999999999999998654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.99 E-value=0.013 Score=54.37 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.+.|++|||||||++.|...
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHH
Confidence 3556999999999999999854
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.049 Score=46.16 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=34.8
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch---HHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCCCChHHHHHHH
Q 015085 192 SASGARSVVLMVVDAADFDGSFP---RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~---~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~~~~~~l~~~~ 266 (413)
.....++.+++|+|+.+...... ..+.+++... ... .+..|+++|+||+|+.... ..+.+.+.+
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~-----~~~-----~~~~pilvv~NK~Dl~~a~-~~~~i~~~l 133 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS-----MAL-----KNSPSLLIACNKQDIAMAK-SAKLIQQQL 133 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH-----HTS-----TTCCEEEEEEECTTSTTCC-CHHHHHHHH
T ss_pred hhhhhccccceEEEcccccccHHHHHHHHHHHHHhH-----HHh-----hcCCcEEEEEECcccCCCC-CHHHHHHHH
Confidence 34567899999999987432111 1122222211 000 1224899999999997532 334444443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.014 Score=48.26 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999999885
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.014 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.||+|+||||+.++|++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999755
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.015 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..|||||||++.+++
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 678899999999999999885
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.78 E-value=0.016 Score=47.72 Aligned_cols=23 Identities=48% Similarity=0.602 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+++++|++||||||+-+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998655
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.77 E-value=0.012 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.1
Q ss_pred EEEcCCCCcHHHHHHHHHccC
Q 015085 310 WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.|.+||||||+.+.|...+
T Consensus 5 vi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 5 IVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 448999999999999998655
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.69 E-value=0.016 Score=48.35 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCcCCCC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~~~~G 335 (413)
+++++|..|||||||++.+.....+..|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 5788999999999999998755444444
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.015 Score=48.84 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.0
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q 015085 308 NVWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~ 327 (413)
++.++|..|||||||++.+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57889999999999999983
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.64 E-value=0.017 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578899999999999998874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.021 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+++.|++|+||||++++|+..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 4677999999999999999865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.017 Score=48.36 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=18.2
Q ss_pred cEEE-EcCCCCcHHHHHHHHHcc
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~ 329 (413)
.+++ +|.+||||||+.+.++..
T Consensus 15 ~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 4444 999999999999998754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.48 E-value=0.019 Score=47.61 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+-+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999997544
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.45 E-value=0.019 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+++++|.+||||||+-+.|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.36 E-value=0.02 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|+++|++||||||+.+.|+..+
T Consensus 9 I~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4559999999999999998543
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.32 E-value=0.02 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+-+.|+..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999997654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.19 E-value=0.017 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+++.|++|+|||||.++|++.+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6669999999999999999765
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.17 E-value=0.022 Score=47.81 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+-+.|...+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.021 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|++||||||+-+.|+..+
T Consensus 11 I~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999998765
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.017 Score=53.97 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHH
Q 015085 308 NVWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~ 327 (413)
++.++|..++|||||+.+|+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 58889999999999999997
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.97 E-value=0.025 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998655
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.82 E-value=0.013 Score=51.16 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
++.++|..++|||||+..|+.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 577899999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.76 E-value=0.027 Score=48.98 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.+.+.||+|+||||+.++|+..+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 467799999999999999997653
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.74 E-value=0.019 Score=50.96 Aligned_cols=22 Identities=45% Similarity=0.403 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..++|||||+..|+..
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll~~ 47 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNILFL 47 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHHHH
T ss_pred EEEEEeeCCCCHHHHHHHHHHH
Confidence 4677999999999999999643
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.017 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|+++|.+||||||+-+.|...+
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4559999999999999997543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.69 E-value=0.033 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
-.++++|++||||||+-+.|+..+
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 367789999999999999998433
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.03 Score=52.54 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015085 309 VWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~ 327 (413)
.+++|+||+||||+|.+|.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4569999999999999985
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.53 E-value=0.033 Score=48.63 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=24.7
Q ss_pred CcchhccchhhhcccCCcEEEEcCCCCcHHHHHHHHHcc
Q 015085 291 GLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~~~g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
|.++.++.+.+. .+..+.+.|+.|+|||||++.++..
T Consensus 16 GR~~el~~l~~~--~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 16 DREKEIEKLKGL--RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CCHHHHHHHHHT--CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHhc--cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 555555555332 2224556899999999999988743
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.51 E-value=0.033 Score=47.55 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.++|..++|||||++.|++..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 57779999999999999999755
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.49 E-value=0.015 Score=53.69 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
++.+.++|++|+|||||.++|.+.++
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCC
Confidence 35688899999999999999988764
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.44 E-value=0.032 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
+++++|..|||||||++.+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578899999999999999864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.43 E-value=0.023 Score=47.81 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|++-|..||||||+++.|...+
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4458999999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.34 E-value=0.031 Score=48.41 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHH-ccCcCCCC
Q 015085 307 GNVWAIGAQNAGKSTLLNAIA-KSVDAGRG 335 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~-g~~~~~~G 335 (413)
.+++++|..|||||||++.+. +...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 468889999999999999875 33334444
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.32 E-value=0.034 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=19.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||.-+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999997544
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.011 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHcc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~ 329 (413)
++.++|..++|||||+..|+..
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~ 29 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYK 29 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5778999999999999999743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.23 E-value=0.035 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|++||||||+-+.|+..+
T Consensus 11 I~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5569999999999999998654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.07 Score=44.48 Aligned_cols=103 Identities=16% Similarity=0.272 Sum_probs=56.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCch-----HHHHH---HhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC-------
Q 015085 192 SASGARSVVLMVVDAADFDGSFP-----RKVAK---MVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS------- 256 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~-----~~l~~---~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~------- 256 (413)
...+.++.+++++|..+...-.. ..+.+ ++....... .. ...|+++|+||+|++...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~-----~~~piilv~NK~Dl~~~~~~~~~~~ 134 (200)
T d1zcba2 63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VF-----SNVSIILFLNKTDLLEEKVQVVSIK 134 (200)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GG-----TTSEEEEEEECHHHHHHHTTTCCGG
T ss_pred ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhCh---hh-----cCceEEEEeccchhhhhhccccHHH
Confidence 45567789999999987643211 11111 111110000 11 124999999999985320
Q ss_pred ----------CChHHHHHHHHHHHHHcCCC---ccceEEEeEEEeecCcchhccchhhh
Q 015085 257 ----------LSPTRFEHWVRQRAREDGIS---KITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 257 ----------~~~~~l~~~~~~~~~~~g~~---~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.......+++....+..... +....+.+||+++.+++.+++.+.+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~ 193 (200)
T d1zcba2 135 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDT 193 (200)
T ss_dssp GTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHH
Confidence 11234445555544432110 11235679999999999988877543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.11 E-value=0.037 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+++++|++||||||+-+.|+..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999997554
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.058 Score=50.15 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=33.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCC
Q 015085 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLL 253 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl 253 (413)
.++.-+|.+++|||+.+........+.+.... .+. |+++|+||+|.+
T Consensus 115 ~al~~~D~allVVda~eGv~~qT~~~~~~a~~----------~~~-----p~i~viNKiDr~ 161 (341)
T d1n0ua2 115 AALRVTDGALVVVDTIEGVCVQTETVLRQALG----------ERI-----KPVVVINKVDRA 161 (341)
T ss_dssp HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----------TTC-----EEEEEEECHHHH
T ss_pred HHHhhcCceEEEEecccCcchhHHHHHHHHHH----------cCC-----CeEEEEECcccc
Confidence 44556899999999998776555555554332 133 899999999975
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.039 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++.|++|+||||++++|+..+
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHh
Confidence 36679999999999999998653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.87 E-value=0.04 Score=48.06 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHccCc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
+.+++.|++|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4577799999999999999987653
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.041 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++++|++||||||.-+.|+..+
T Consensus 4 I~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6679999999999999997543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.042 Score=45.70 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+.+.|+..+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998644
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.79 E-value=0.043 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++.||+|+||||+.++|+..+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45669999999999999999765
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.045 Score=47.13 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+||||+.++|+..+
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHHH
Confidence 36679999999999999987543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.66 E-value=0.24 Score=44.41 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=33.6
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~ 255 (413)
++..+|..|+|||+.+.....-..+.+..... +. |.++++||+|....
T Consensus 91 ~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~----------~l-----P~i~fINKmDr~~a 138 (276)
T d2bv3a2 91 SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY----------KV-----PRIAFANKMDKTGA 138 (276)
T ss_dssp HHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT----------TC-----CEEEEEECTTSTTC
T ss_pred HHHhhhheEEeccccCCcchhHHHHHHHHHHc----------CC-----CEEEEEeccccccc
Confidence 34457999999999987654444454444332 33 89999999998644
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.44 E-value=0.077 Score=48.97 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=34.7
Q ss_pred EEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhhhc
Q 015085 243 VVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 243 vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
=++|+||+|+...........++. ..++.... .-..+|+.+||.+|.|+++|++.|.++.
T Consensus 195 Di~VvNKaD~~~~~~~~~~~~~~~-~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 195 DLIVINKDDGDNHTNVAIARHMYE-SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHH-HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred cEEEEEeecccchHHHHHHHHHHH-HHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 378899999864310001112221 11111110 0113699999999999999999996543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.43 E-value=0.045 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++.|++|+||||++++++..+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 36779999999999999998653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.29 E-value=0.046 Score=51.98 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=54.2
Q ss_pred hcCCCcEEEEEEeCCCCCCCchHHHHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC--------CCChH----
Q 015085 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS--------SLSPT---- 260 (413)
Q Consensus 193 ~~~~~dlVl~VvD~~d~~~s~~~~l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~--------~~~~~---- 260 (413)
....+|++++++|.. + ...+..+.+.+... ++ |+++|+||+|.... ....+
T Consensus 132 ~~~~~d~~l~~~~~~-~-~~~d~~l~~~l~~~----------~k-----~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~ 194 (400)
T d1tq4a_ 132 KFYEYDFFIIISATR-F-KKNDIDIAKAISMM----------KK-----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 194 (400)
T ss_dssp TGGGCSEEEEEESSC-C-CHHHHHHHHHHHHT----------TC-----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred hhhcceEEEEecCCC-C-CHHHHHHHHHHHHc----------CC-----CEEEEEeCcccccchhhhcccccccHHHHHH
Confidence 455789998888753 2 23344555555432 43 99999999996411 11111
Q ss_pred HHHHHHHHHHHHcCCCccceEEEeEEE--eecCcchhccchhhhccc
Q 015085 261 RFEHWVRQRAREDGISKITKLHFVSAV--KNWGLKSLIDDVVDLAGK 305 (413)
Q Consensus 261 ~l~~~~~~~~~~~g~~~~~~V~~vSa~--~~~Gi~~Ll~~I~~l~~~ 305 (413)
.+.+.....++..+. ....|+++|.. ..||+..|.+.+.+.+..
T Consensus 195 ~ir~~~~~~l~~~~~-~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~ 240 (400)
T d1tq4a_ 195 DIRLNCVNTFRENGI-AEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 240 (400)
T ss_dssp HHHHHHHHHHHHTTC-SSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHcCC-CCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence 122222333444443 23468888864 356778888877665543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.21 E-value=0.052 Score=46.67 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=19.4
Q ss_pred cCCc-EEEEcCCCCcHHHHHHHHHc
Q 015085 305 KRGN-VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 305 ~~g~-~~~vG~ng~GKSTLin~L~g 328 (413)
.+|. +|+.|.+|||||||-+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3443 66699999999999999874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.06 E-value=0.056 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.++||+|+|||.|.++|++.+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 4567789999999999999998754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.063 Score=45.79 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+.++.+||++|+|||+++..|+...
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEecCCcccHHHHHHHHHHH
Confidence 4467889999999999999998644
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.94 E-value=0.038 Score=51.06 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=35.2
Q ss_pred EEEEEEcccCCCCCCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhhhc
Q 015085 243 VVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 243 vilViNK~DLl~~~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
=++|+||+|+.+............+..+..... .....|+.+||.++.|+++|++.|.++.
T Consensus 192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred heeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 389999999865411111111111111111110 0123699999999999999999996553
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.83 E-value=0.06 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.++++|++||||||+-+.|+..+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.061 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|.+.|++|||||||-+.|...+
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4458999999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.43 E-value=0.072 Score=47.75 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=26.7
Q ss_pred Ccchhccchhhhcc--cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 291 GLKSLIDDVVDLAG--KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 291 Gi~~Ll~~I~~l~~--~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|.++-++.+...+. .+.++.+||++|||||+++..|+...
T Consensus 22 gRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 22 GREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence 44433333333332 33468889999999999999998643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.27 E-value=0.08 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.6
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccC
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.+++ +|++||||||.+--|+..+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 4544 9999999999998887554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=90.12 E-value=0.089 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+.++|++||||||.+=-|+...
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4459999999999997777544
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.07 E-value=0.085 Score=46.88 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+|||+|.++|+...
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHHHc
Confidence 46679999999999999998654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.046 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|++-|+-||||||+++.|...+
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5568999999999999998765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.95 E-value=0.086 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.7
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
+..+++ +|++||||||.+=-|+..+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344544 9999999999987777544
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.94 E-value=0.071 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+|||+|+++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 46779999999999999999744
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.86 E-value=0.09 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.5
Q ss_pred cEE-EEcCCCCcHHHHHHHHHccC
Q 015085 308 NVW-AIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~-~vG~ng~GKSTLin~L~g~~ 330 (413)
.++ ++|++||||||.+--|+..+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 444 49999999999998887554
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.80 E-value=0.22 Score=41.00 Aligned_cols=100 Identities=16% Similarity=0.271 Sum_probs=54.9
Q ss_pred hhcCCCcEEEEEEeCCCCCCC---------chHH---HHHHhhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCCC---
Q 015085 192 SASGARSVVLMVVDAADFDGS---------FPRK---VAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS--- 256 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s---------~~~~---l~~~l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~~--- 256 (413)
.....++.+++++|..+...- ..+. +..++... ...+ .++++|+||+|+....
T Consensus 64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-------~~~~-----~~~~~v~NK~Dl~~~~~~~ 131 (200)
T d2bcjq2 64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP-------WFQN-----SSVILFLNKKDLLEEKIMY 131 (200)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-------GGSS-----SEEEEEEECHHHHHHHTTT
T ss_pred ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhh-------hccC-----ccEEEecchhhhhhhcccc
Confidence 345678999999999875321 0111 22222110 0112 3899999999975321
Q ss_pred --------------CChHHHHHHHHHHHHHcCCC--ccceEEEeEEEeecCcchhccchhhhc
Q 015085 257 --------------LSPTRFEHWVRQRAREDGIS--KITKLHFVSAVKNWGLKSLIDDVVDLA 303 (413)
Q Consensus 257 --------------~~~~~l~~~~~~~~~~~g~~--~~~~V~~vSa~~~~Gi~~Ll~~I~~l~ 303 (413)
........++.......... +...++.+||+++.+++++++.|.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 132 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp SCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 11122233333333222211 122366789999999999998875543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.80 E-value=0.083 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|.+-|.-||||||+++.|...+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999988543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=89.79 E-value=0.08 Score=50.23 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.|=+.+.|++|+||||++.+++...
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hceEEEEcCCCCCccHHHHHHhhhh
Confidence 4556669999999999999998755
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.65 E-value=0.049 Score=47.75 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.8
Q ss_pred EEEcCCCCcHHHHHHHHHccC
Q 015085 310 WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~ 330 (413)
++.|++|+||||+++.++..+
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHHH
Confidence 346999999999999998653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.35 E-value=0.088 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++.++||+|||||-|.++|++.+
T Consensus 48 ~ksNILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccccEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999865
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.16 E-value=0.091 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46779999999999999998653
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.98 E-value=0.11 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=18.9
Q ss_pred CcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 307 GNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 307 g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
|..++ -|..||||||+++.|...+
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44444 7999999999999988543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.73 E-value=0.12 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
+|.+++ -|+.||||||+++.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355444 6999999999999987543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.68 E-value=0.095 Score=45.20 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=14.1
Q ss_pred cEEE-EcCCCCcHHHHHHHHHccC
Q 015085 308 NVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.+++ +|++||||||.+=-|+..+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 9999999999987777544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.36 E-value=0.1 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 46779999999999999999754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.70 E-value=0.27 Score=40.19 Aligned_cols=103 Identities=16% Similarity=0.264 Sum_probs=54.7
Q ss_pred hhcCCCcEEEEEEeCCCCCCCc-----hHHHHHH---hhhhHhHhHHHhhcCCCCCCCcEEEEEEcccCCCC--------
Q 015085 192 SASGARSVVLMVVDAADFDGSF-----PRKVAKM---VSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------- 255 (413)
Q Consensus 192 ~~~~~~dlVl~VvD~~d~~~s~-----~~~l~~~---l~~~~~~~~~~~~~~k~~~~~~vilViNK~DLl~~-------- 255 (413)
.....++.+++|+|..+...-. ...+.+. ....... ... ...|+++|+||+|+...
T Consensus 61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~---~~~-----~~~~~~lv~Nk~d~~~~~~~~~~~~ 132 (195)
T d1svsa1 61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN---KWF-----TDTSIILFLNKKDLFEEKIKKSPLT 132 (195)
T ss_dssp GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTC---GGG-----TTSEEEEEEECHHHHHHHTTTSCGG
T ss_pred hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcc---ccc-----CCCCEEEEeccchhhhhhccchHHH
Confidence 4567889999999987654211 1111111 1110000 001 12389999999996321
Q ss_pred --------CCChHHHHHHHHHHHHHcCC---CccceEEEeEEEeecCcchhccchhhh
Q 015085 256 --------SLSPTRFEHWVRQRAREDGI---SKITKLHFVSAVKNWGLKSLIDDVVDL 302 (413)
Q Consensus 256 --------~~~~~~l~~~~~~~~~~~g~---~~~~~V~~vSa~~~~Gi~~Ll~~I~~l 302 (413)
.........++......... .+...++.+||+++.+++++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~ 190 (195)
T d1svsa1 133 ICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDV 190 (195)
T ss_dssp GTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHH
Confidence 11122333444433332211 011235679999999999999887554
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.63 E-value=0.16 Score=43.49 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.1
Q ss_pred CCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 306 RGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 306 ~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
+|..++ -|.-||||||+++.|...+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 355444 8999999999999998655
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.25 E-value=0.13 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.+.|++|+|||+|.++|++..
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcchhHHHHHHHHh
Confidence 46679999999999999999765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.17 E-value=0.15 Score=42.38 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 015085 309 VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g 328 (413)
+.+.|..||||||+.+.|..
T Consensus 6 IgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 34489999999999998864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.06 E-value=0.17 Score=41.69 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=19.7
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g 328 (413)
..|.++. .|++|+|||||...++.
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3467777 99999999999987764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.74 E-value=0.16 Score=43.62 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|++-|.-||||||+++.|...+
T Consensus 5 IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 5558999999999999998655
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.26 E-value=0.21 Score=43.54 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=16.9
Q ss_pred cEE-EEcCCCCcHHHHHHHHH
Q 015085 308 NVW-AIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 308 ~~~-~vG~ng~GKSTLin~L~ 327 (413)
.++ +.|+|.+||||+++++.
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHH
Confidence 444 48999999999999875
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.96 E-value=0.19 Score=46.88 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=22.7
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
..+++.++||+|||||-|-++|+...
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcceeeeCCCCccHHHHHHHHHhhc
Confidence 45678889999999999999998754
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.93 E-value=0.32 Score=43.27 Aligned_cols=26 Identities=38% Similarity=0.799 Sum_probs=22.0
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
++..+++.|+.++|||+|+++|...+
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34456779999999999999999876
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=85.55 E-value=0.21 Score=41.96 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
|.+.|++||||||+=+.|+..+
T Consensus 6 I~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4446999999999999998544
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.87 E-value=0.28 Score=40.13 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.4
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g~~ 330 (413)
.+|.+++ .|.=|||||||.+.++..+
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4555555 8999999999999999766
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=84.81 E-value=0.23 Score=42.98 Aligned_cols=19 Identities=47% Similarity=0.553 Sum_probs=16.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015085 309 VWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~ 327 (413)
+++.|+|.+||||+++.+.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEESCSSSSHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhH
Confidence 4459999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=84.72 E-value=0.24 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=19.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g 328 (413)
.+|++++ .|.+|+|||||+..|+-
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4577777 89999999999876653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.70 E-value=0.2 Score=43.21 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=18.0
Q ss_pred EEE-EcCCCCcHHHHHHHHHcc
Q 015085 309 VWA-IGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~-vG~ng~GKSTLin~L~g~ 329 (413)
+++ .|--|||||||||.|+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 444 899999999999999864
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.28 E-value=0.2 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHcc
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~ 329 (413)
.+.++.+||++|||||+++..|+..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHHH
Confidence 3456888999999999999887753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=84.23 E-value=0.25 Score=41.68 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 015085 309 VWAIGAQNAGKSTLLNAIA 327 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~ 327 (413)
+.+.|..||||||+.+.|.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4459999999999999886
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.20 E-value=0.27 Score=41.54 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+.+-|++||||||+-+.|+..+
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4456999999999999998654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.93 E-value=0.27 Score=45.74 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 305 KRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 305 ~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+..+.+.||+|+|||++.++|++.+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCeEEEECCCCCCHHHHHHHHHHHc
Confidence 33345669999999999999999765
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.79 E-value=0.27 Score=41.65 Aligned_cols=20 Identities=45% Similarity=0.499 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 015085 309 VWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g 328 (413)
+.++|..||||||..+.|..
T Consensus 6 IgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 34599999999999998863
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=83.74 E-value=0.19 Score=42.89 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.1
Q ss_pred cccCCcEEEEcCCCCcHHHHHHHHHccC
Q 015085 303 AGKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 303 ~~~~g~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+++..++++|++|+|||++..+|++.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence 3455567779999999999999998776
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=83.49 E-value=0.22 Score=42.27 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.3
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHH
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIA 327 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~ 327 (413)
..|.+++ .|++|+|||+|.-.++
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4567777 8999999999987776
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.87 E-value=0.31 Score=43.32 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcc
Q 015085 309 VWAIGAQNAGKSTLLNAIAKS 329 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~ 329 (413)
+.++|..|+|||||.+.+...
T Consensus 47 v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 47 LFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 445999999999999988643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=82.83 E-value=0.32 Score=41.54 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+++.|++|+|||-|++++....
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7889999999999999998543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.59 E-value=0.32 Score=44.19 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHccC
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.++||+|+|||.|.++|+..+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 45569999999999999998754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=82.54 E-value=0.31 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.4
Q ss_pred EEEcCCCCcHHHHHHHHHccC
Q 015085 310 WAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 310 ~~vG~ng~GKSTLin~L~g~~ 330 (413)
.+.|++||||||+-+.|...+
T Consensus 84 GIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 84 SIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCcHHHHHHHHHH
Confidence 348999999999988887654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.50 E-value=0.33 Score=40.44 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
.+.+.|++|+|||||.-.|..
T Consensus 17 gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 466699999999999988874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.46 E-value=0.32 Score=41.18 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=19.4
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHHHc
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L~g 328 (413)
.+|.+++ .|++|+|||||.-.++-
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4566666 89999999999987763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.33 E-value=0.32 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHc
Q 015085 307 GNVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 307 g~~~~vG~ng~GKSTLin~L~g 328 (413)
..++++|.+|+|||++++.|+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 3588899999999999976653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.71 E-value=0.37 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHccC
Q 015085 309 VWAIGAQNAGKSTLLNAIAKSV 330 (413)
Q Consensus 309 ~~~vG~ng~GKSTLin~L~g~~ 330 (413)
+.+.|++|+||||+.++++..+
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999999987654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.61 E-value=0.36 Score=40.54 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.2
Q ss_pred cCCcEEE-EcCCCCcHHHHHHHH
Q 015085 305 KRGNVWA-IGAQNAGKSTLLNAI 326 (413)
Q Consensus 305 ~~g~~~~-vG~ng~GKSTLin~L 326 (413)
..|.+++ .|++|+|||+|.-.+
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHH
Confidence 4567666 899999999997543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.32 E-value=0.45 Score=43.64 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHccCc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g~~~ 331 (413)
.|++=|.-|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 477789999999999999987653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=81.17 E-value=0.4 Score=39.84 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHc
Q 015085 308 NVWAIGAQNAGKSTLLNAIAK 328 (413)
Q Consensus 308 ~~~~vG~ng~GKSTLin~L~g 328 (413)
.+.+.|++|+|||||.-.|..
T Consensus 16 gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 466699999999999988774
|