Citrus Sinensis ID: 015088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFSVHPQ
Secondary Structure (PSIPRED)
cccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccccEEEEEEcccEEEcHHHHHHHHHHHHHHcccEEEcccEEEEEEEccccccccEEEEEcccEEEEccEEEEcccccHHHHHHHHcccccccEEEEEEEEEEEEcccccccccccccccEEEEcccccEEEcccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEccccccccEEEccccccccccEEEEEcccHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccEHHHHHHHHHHHHHccccEEEEcccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEccEEEEcccccHHHHHHHHHHHHccccEEEccHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccccEEEEEEccccEEEEcEEEEEccHHHHHHHHHHccccccEEEEEEEEEEEEccccccccccccccccEEEcccccEEEEccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHcccccEEEEEEcEcccccccccEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFlhhrgsshgesrtiratypedyyhpmvleSCLLWEQAQSEIGYKVYFKAhqfdmgpsenkSLRSVIASCrknsvphqvlDCRQVLEKYsgrieipenWVGVATElggvikptkAVSMFQTLAIKNgavlrdnmEVKTVLKVKDAVKGGVTVVTSngekfwgkkcvvTAGAWVGKLVKRItglelpiqAVETTVCYWRIkegneadyavggdfpsfasygdpyiygtpsleypglikialhggypcdpdrrpwgpgllLDSLKEWIQGrfagrvdsngpvatqlcmysitpdedfVIDFlggefgedvvvaggfsghgfkmaPAVGRILADLVLSGEAQGVELQHFRIsrfkenpkgnvkdyedqvsfsvhpq
Flexible Loop (DISEMBL)
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLhhrgsshgesrtIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCrknsvphqvlDCRQVLEKysgrieipenwVGVATELGGVIKPTKAVSMFQTLAIkngavlrdnMEVKTVlkvkdavkggvtvvtsngekfwgkkcVVTAGAWVGKLVKritglelpiqaVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFagrvdsngpVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFrisrfkenpkgnvkdyedqvsfsvhpq
Low Complexity Region (SEG)
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFSVHPQ
Disordered region (IsUnstruct)
******KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG******RTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDM********RSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR***********************
Disordered Region (DISOPRED)
***PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN*******************
Disordered Region (DISEMBL)
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH********RTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFSVHPQ
Disordered Region (DISPRO)
*****EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFSVHPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9SJA7	416	Probable sarcosine oxidas	yes	no	0.987	0.980	0.695	1e-172
Q9P0Z9	390	Peroxisomal sarcosine oxi	yes	no	0.915	0.969	0.362	3e-60
Q29RU9	392	Peroxisomal sarcosine oxi	yes	no	0.917	0.966	0.363	4e-60
P79371	390	Peroxisomal sarcosine oxi	yes	no	0.915	0.969	0.357	3e-59
Q9D826	390	Peroxisomal sarcosine oxi	yes	no	0.910	0.964	0.343	4e-56
P40859	390	Monomeric sarcosine oxida	N/A	no	0.876	0.928	0.334	7e-44
P23342	387	Monomeric sarcosine oxida	N/A	no	0.876	0.935	0.331	3e-43
P40873	389	Monomeric sarcosine oxida	N/A	no	0.878	0.933	0.324	1e-39
B4TET2	372	N-methyl-L-tryptophan oxi	yes	no	0.876	0.973	0.292	3e-38
B5F947	372	N-methyl-L-tryptophan oxi	yes	no	0.876	0.973	0.292	3e-38

>sp|Q9SJA7|SOX_ARATH Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1

 Score =  606 bits (1562), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/414 (69%), Positives = 344/414 (83%), Gaps = 6/414 (1%)

Query: 1   MEFPGE-KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+  + +FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES  LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct: 61  PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query: 120 LDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTV 179
           +D   V E +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDN +V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query: 180 LKVKDAVKG-GVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR 238
            +  D   G GV V T  G+KF+GKKC+VTAGAW+ KLVK + G++ P++ +ETTVCYWR
Sbjct: 181 KR--DGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWR 238

Query: 239 IKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL 298
           IKEG+E  + + G+FP+FASYG PY+YGTPSLEYPGLIK+A+HGGY CDPD+RPWGPG+ 
Sbjct: 239 IKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVK 298

Query: 299 LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHG 358
           L+ LKEWI+ RF G VDS GPVATQLCMYS+TPDEDFVIDFLGGEFG DVVV GGFSGHG
Sbjct: 299 LEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHG 358

Query: 359 FKMAPAVGRILADLVLSGEA--QGVELQHFRISRFKENPKGNVKDYEDQVSFSV 410
           FKMAPAVGRILAD+ +  EA   GVE++ F + RF++NPKGN K+Y DQV   V
Sbjct: 359 FKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDV 412

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 3EC: .EC: 1

>sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=1 SV=2

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/397 (36%), Positives = 208/397 (52%), Gaps = 19/397 (4%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct: 8   WDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
           + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ +
Sbjct: 68  MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           ++   I +P   VG+    GGVI   KA+   Q    + G ++RD        KV +   
Sbjct: 128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGE------KVVEINP 180

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
           G +  V +    +  K  V+TAG W  +L+ R  G+E+P+Q +   VCYWR  E     Y
Sbjct: 181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLL-RPLGIEMPLQTLRINVCYWR--EMVPGSY 237

Query: 248 AVGGDFPSFASYG--DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW 305
            V   FP F   G    +IYG P+ EYPGL+K++ H G   DP+ R   P    D     
Sbjct: 238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDC-PTARTDIGDVQ 296

Query: 306 IQGRFAGRVDSN---GPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMA 362
           I   F      +    P   + CMY+ TPDE F++D       +++V+  GFSGHGFK+A
Sbjct: 297 ILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLA 354

Query: 363 PAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
           P VG+IL +L +       +L  FRISRF    K ++
Sbjct: 355 PVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|Q29RU9|SOX_BOVIN Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIPOX PE=2 SV=2

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 206/402 (51%), Gaps = 23/402 (5%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E +D IV+GAGI G   AY LAK  +K LLLEQF   H RGSSHG+SR IR  YPED+Y 
Sbjct: 6   ELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYT 65

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
            M+ E   LW Q + E G ++Y +     +G  EN  L+ + A+  +  V HQ L   ++
Sbjct: 66  QMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELKIIQATLSRQGVEHQCLSSEEL 125

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++   I +    VG+    GGV+   KA+   Q    + G ++ D  +V         
Sbjct: 126 KQRFPN-IRLARGEVGLLEVSGGVLYADKALRALQDAIRQLGGIVHDGEKVVE------- 177

Query: 186 VKGGVTV-VTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
           +K G+ V V +    +  K  ++TAG W  +L+ R  G ELP+Q +   VCYW  +E   
Sbjct: 178 IKSGLPVMVKTTSRSYQAKSLIITAGPWTNRLL-RPLGAELPLQTLRINVCYW--QEKVP 234

Query: 245 ADYAVGGDFPSFASYG----DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
             Y+V   FP F   G      +IYG PS EYPGL+K+  H G   DP+ R   P    D
Sbjct: 235 GSYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-PAAFSD 293

Query: 301 SLKEWIQGRFAGRVDSN---GPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGH 357
                I   F      +    P   + CMY+ TPD  FV+D       +++V+  GFSGH
Sbjct: 294 IQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD--RHPKYDNIVIGAGFSGH 351

Query: 358 GFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
           GFK++P VG+IL +L +       +L  FRISRF    K ++
Sbjct: 352 GFKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|P79371|SOX_RABIT Peroxisomal sarcosine oxidase OS=Oryctolagus cuniculus GN=PIPOX PE=1 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 206/397 (51%), Gaps = 19/397 (4%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +D IV+GAGI G    Y L K  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct: 8   WDAIVIGAGIQGCFTVYHLVKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
           + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ +
Sbjct: 68  MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           ++   I +P   VG+    GGVI   KA+   Q    + G ++RD        KV +   
Sbjct: 128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDGE------KVVEINP 180

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
           G +  V +    +  K  V+TAG W  +L+ R  G+E+P+Q +   VCYWR  E     Y
Sbjct: 181 GLLVTVKTTSRSYQAKSLVITAGPWTNQLL-RPLGIEMPLQTLRINVCYWR--EMVPGSY 237

Query: 248 AVGGDFPSFASYG--DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW 305
            V   FP F   G    +IYG P+ EYPGL+K++ H G   DP+ R   P    D     
Sbjct: 238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDC-PTARTDIGDVQ 296

Query: 306 IQGRFAGRVDSN---GPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMA 362
           I   F      +    P   + CMY+ TPDE F++D       +++V+  GFSGHGFK+A
Sbjct: 297 ILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLA 354

Query: 363 PAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
           P VG+IL +L +       +L  FRISRF    K ++
Sbjct: 355 PVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Oryctolagus cuniculus (taxid: 9986)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|Q9D826|SOX_MOUSE Peroxisomal sarcosine oxidase OS=Mus musculus GN=Pipox PE=2 SV=1

 Score =  219 bits (557), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/399 (34%), Positives = 201/399 (50%), Gaps = 23/399 (5%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           +D IV+GAGI G   AY LAK  +  LLLEQF   H RGSSHG+SR IR  YPED+Y  M
Sbjct: 8   WDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFYTMM 67

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
           + E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + +
Sbjct: 68  MKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQ 127

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           ++   I      VG+  + GGV+   KA+   Q +  + G  + D        KV +   
Sbjct: 128 RFPN-IRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDGE------KVVEIRP 180

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
           G    V +  + +     V+TAG W  +L+  + G+ELP+Q +   VCYWR  E     Y
Sbjct: 181 GLPVTVKTTLKSYQANSLVITAGPWTNRLLHPL-GIELPLQTLRINVCYWR--EKVPGSY 237

Query: 248 AVGGDFPSF--ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD----- 300
            V   FP          +IYG P+ EYPGL+KI  H G   DP+ R   P    D     
Sbjct: 238 GVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDPEERDC-PKTFSDIQDVQ 296

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
            L  +++    G      P   + CMY+ TPDE F++D       +++V+  GFSGHGFK
Sbjct: 297 ILCHFVRDHLPGL--RAEPDIMERCMYTNTPDEHFILDCHPKY--DNIVIGAGFSGHGFK 352

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
           +AP VG+IL +L +       +L  FR+SRF    K ++
Sbjct: 353 LAPVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390

Metabolizes sarcosine, L-pipecolic acid and L-proline.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 7

>sp|P40859|MSOX_BACB0 Monomeric sarcosine oxidase OS=Bacillus sp. (strain B-0618) GN=soxA PE=1 SV=2

 Score =  178 bits (451), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 5   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 64

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 65  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 124

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 125 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 183

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 184 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 234

Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+   DFP F     +   YG PS    GL K+  H  G   DPD         P    
Sbjct: 235 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 293

Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFS
Sbjct: 294 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 344

Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 345 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 378

Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.

Bacillus sp. (strain B-0618) (taxid: 69000)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|P23342|MSOX_BACSN Monomeric sarcosine oxidase OS=Bacillus sp. (strain NS-129) GN=soxA PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 209/395 (52%), Gaps = 33/395 (8%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A Y LAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 5   FDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYVP 64

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQV 125
             L +  LW + + E  +K++ +      GP    +  S  + +   +S+ H++ + +Q+
Sbjct: 65  FALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQL 124

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            ++++G +E+P+N+  +     GV+     +  ++ LA  +GA +     V+     +D 
Sbjct: 125 TDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTEDL 183

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
               VT+ T+ G  +   K VV+ GAW  KL+ ++  +E+P+Q     V ++   E +EA
Sbjct: 184 ----VTIKTAKG-SYTANKLVVSMGAWNSKLLSKLD-VEIPLQPYRQVVGFF---ECDEA 234

Query: 246 DYAVGGDFPSFASYGDPYI-YGTPSLEYPGLIKIALHG-GYPCDPD--RRPWGP-----G 296
            Y+    +P+F    +  I YG PS    GL KI  H  G   DPD   R +G       
Sbjct: 235 KYSNNAHYPAFMVEVENGIYYGFPSFGGSGL-KIGYHSYGQQIDPDTINREFGAYPEDEA 293

Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L++++ G       +NG +    +CMY+ TPDE FVID L  ++  +V +A GFS
Sbjct: 294 NLRKFLEQYMPG-------ANGELKKGAVCMYTKTPDEHFVID-LHPKYS-NVAIAAGFS 344

Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG  LA L  +G+ +  ++  F ++R
Sbjct: 345 GHGFKFSSVVGETLAQLATTGKTEH-DISIFSLNR 378

Catalyzes the oxidative demethylation of sarcosine.

Bacillus sp. (strain NS-129) (taxid: 1419)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|P40873|MSOX_ARTST Monomeric sarcosine oxidase OS=Arthrobacter sp. (strain TE1826) GN=soxA PE=1 SV=2

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 203/394 (51%), Gaps = 31/394 (7%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           +DVIVVGAG MG +A Y L+K+G KTLL++ F   H  GS HG++R IR  Y E   Y P
Sbjct: 7   YDVIVVGAGSMGMAAGYYLSKQGVKTLLVDSFHPPHTNGSHHGDTRIIRHAYGEGREYVP 66

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
             L +  LW + + E  +K++ K      GP  E   +   + + +++S+   +L+  ++
Sbjct: 67  FALRAQELWYELEKETHHKIFTKTGVLVFGPKGEAPFVAETMEAAKEHSLDVDLLEGSEI 126

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G + +PEN+  +  +  GV+     +  ++ LA  NGA +     V+     +D 
Sbjct: 127 NKRWPG-VTVPENYNAIFEKNSGVLFSENCIRAYRELAEANGAKVLTYTPVEDFEIAEDF 185

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+ G  F   K +V+ GAW  KL+ ++  +E+P+Q     V ++   E +E 
Sbjct: 186 VK----IQTAYG-SFTASKLIVSMGAWNSKLLSKLN-IEIPLQPYRQVVGFF---ECDEK 236

Query: 246 DYAVGGDFPSFASYGDPYI-YGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+    +P+F       I YG PS    GL KI  H  G   DPD         P   G
Sbjct: 237 KYSNTHGYPAFMVEVPTGIYYGFPSFGGCGL-KIGYHTYGQKIDPDTINREFGIYPEDEG 295

Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSG 356
            +   L+ ++ G   G + S       +CMY+ TPDE FVID L  +F  +V +A GFSG
Sbjct: 296 NIRKFLETYMPGA-TGELKSG-----DVCMYTKTPDEHFVID-LHPQFS-NVAIAAGFSG 347

Query: 357 HGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           HGFK +  VG  L+ L ++G+ +  ++  F I+R
Sbjct: 348 HGFKFSSVVGETLSQLAVTGKTEH-DISIFSINR 380

Catalyzes the oxidative demethylation of sarcosine.

Arthrobacter sp. (strain TE1826) (taxid: 68999)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: 1

>sp|B4TET2|MTOX_SALHS N-methyl-L-tryptophan oxidase OS=Salmonella heidelberg (strain SL476) GN=solA PE=3 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 34/396 (8%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYH 65
           K+D+I++G+G +G++A Y   + G K L+ +     H +GS HG++R IR  Y E + Y 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYV 61

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
           P+VL +  LW++  +     ++ ++   ++GP+++  L +V  S ++  +  + LD   +
Sbjct: 62  PLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATAL 121

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
           + ++   I +P+N++G+     G ++   A++ +  LA + G     N  V  +    + 
Sbjct: 122 MTRWP-EIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIHHDDN- 179

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
              GVT+ TS G  +   K +++AG WV  LV      ELP+Q V     +++     + 
Sbjct: 180 ---GVTIETSEG-SYHASKALISAGTWVKALVP-----ELPVQPVRKVFAWFKA----DG 226

Query: 246 DYAVGGDFPSFAS---YGDPYIYGTPSLEYPGLIKIALHGG---YPCDPDRRPWGPGLLL 299
            Y+    FP+F      GD Y YG P+      +KI  H G        +R+P+   +  
Sbjct: 227 RYSTKNRFPAFTGEMPNGDQY-YGFPAEN--DELKIGKHNGGQRIQAQEERKPFA-AVAS 282

Query: 300 DSLKE--WIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGH 357
           D  +   +++    G     G +    C Y  +PDEDF+ID L G   E+ +V  G SGH
Sbjct: 283 DGAEAFPFLRNVLPG---IGGCLHGAACTYDNSPDEDFIIDTLPGH--ENTLVITGLSGH 337

Query: 358 GFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE 393
           GFK AP +G I AD  L G+    +L  FR+SRF +
Sbjct: 338 GFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372

Catalyzes the oxidative demethylation of N-methyl-L-tryptophan.

Salmonella heidelberg (strain SL476) (taxid: 454169)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

>sp|B5F947|MTOX_SALA4 N-methyl-L-tryptophan oxidase OS=Salmonella agona (strain SL483) GN=solA PE=3 SV=1

 Score =  159 bits (403), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 199/396 (50%), Gaps = 34/396 (8%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYH 65
           K+D+I++G+G +G++A Y   + G K L+ +     H +GS HG++R IR  Y E + Y 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHHGDTRLIRHAYGEGEKYV 61

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
           P+VL +  LW++  +     ++ ++   ++GP+++  L +V  S ++  +  + LD   +
Sbjct: 62  PLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANVARSAQQWQLNVERLDATAL 121

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
           + ++   I +P+N++G+     G ++   A++ +  LA + G     N  V  +    + 
Sbjct: 122 MTRWP-EIRVPDNYIGLFEADSGFLRSELAITTWLRLAREAGCAQLFNSPVSHIHHDDN- 179

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
              GVT+ TS G  +   K +++AG WV  LV      ELP+Q V     +++     + 
Sbjct: 180 ---GVTIETSEG-SYHASKALISAGTWVKALVP-----ELPVQPVRKVFAWFKA----DG 226

Query: 246 DYAVGGDFPSFAS---YGDPYIYGTPSLEYPGLIKIALHGG---YPCDPDRRPWGPGLLL 299
            Y+    FP+F      GD Y YG P+      +KI  H G        +R+P+   +  
Sbjct: 227 RYSTKNRFPAFTGEMPNGDQY-YGFPAEN--DELKIGKHNGGQLIQAPEERKPFA-AVAS 282

Query: 300 DSLKE--WIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGH 357
           D  +   +++    G     G +    C Y  +PDEDF+ID L G   E+ +V  G SGH
Sbjct: 283 DGAEAFPFLRNVLPG---IGGCLHGAACTYDNSPDEDFIIDTLPGH--ENTLVITGLSGH 337

Query: 358 GFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE 393
           GFK AP +G I AD  L G+    +L  FR+SRF +
Sbjct: 338 GFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372

Catalyzes the oxidative demethylation of N-methyl-L-tryptophan.

Salmonella agona (strain SL483) (taxid: 454166)

EC: 1

EC: .

EC: 5

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
224142069	411	sarcosine oxidase [Populus trichocarpa]	0.985	0.990	0.797	0.0
255589834	411	sarcosine oxidase, putative [Ricinus com	0.983	0.987	0.732	0.0
224121148	401	sarcosine oxidase [Populus trichocarpa]	0.963	0.992	0.753	0.0
297825429	415	sarcosine oxidase family protein [Arabid	0.980	0.975	0.708	1e-172
15224169	416	putative sarcosine oxidase [Arabidopsis	0.987	0.980	0.695	1e-171
225464346	431	PREDICTED: probable sarcosine oxidase-li	0.992	0.951	0.682	1e-169
449437334	409	PREDICTED: probable sarcosine oxidase-li	0.966	0.975	0.657	1e-158
357466531	390	Sarcosine oxidase [Medicago truncatula]	0.932	0.987	0.641	1e-153
357466535	391	Sarcosine oxidase [Medicago truncatula]	0.944	0.997	0.619	1e-147
388495658	391	unknown [Medicago truncatula]	0.944	0.997	0.616	1e-146

>gi|224142069|ref|XP_002324381.1| sarcosine oxidase [Populus trichocarpa] gi|222865815|gb|EEF02946.1| sarcosine oxidase [Populus trichocarpa]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/409 (79%), Positives = 366/409 (89%), Gaps = 2/409 (0%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+    FDVIVVGAGIMGSS AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSSHHFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  MV+ES   WEQAQSEIGYKVYFKA QFDMGPS+NKSL SVI+SC + S+PHQVL
Sbjct: 61  EDYYCDMVMESSQSWEQAQSEIGYKVYFKAQQFDMGPSDNKSLLSVISSCERKSLPHQVL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
           D +QV +++SGRI IPE+WVGV TE+GGVIKPTKAVSMFQ LA + GAVLRDNMEVK + 
Sbjct: 121 DGQQVADRFSGRINIPESWVGVLTEVGGVIKPTKAVSMFQALAFQKGAVLRDNMEVKNI- 179

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            VKD  +GGV VV +NGE++WGKKCVVTAGAW+GKLVK ++GLELPIQA+ETTVCYWRIK
Sbjct: 180 -VKDEARGGVNVVVANGEEYWGKKCVVTAGAWMGKLVKTVSGLELPIQALETTVCYWRIK 238

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
           EG+EA +A+G DFP+FASYG+PYIYGTPSLE+PGLIKIA+HGGY CDPD+RPWGPG+  D
Sbjct: 239 EGHEAKFAIGSDFPTFASYGEPYIYGTPSLEFPGLIKIAVHGGYTCDPDKRPWGPGISSD 298

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
           S+KEWI+GRF+G VD  GPVATQLCMYS+TPD DFVIDFLGGEFG+DVVV GGFSGHGFK
Sbjct: 299 SMKEWIEGRFSGLVDYGGPVATQLCMYSMTPDGDFVIDFLGGEFGKDVVVGGGFSGHGFK 358

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFS 409
           MAP VGRILADL LSGEA+GV+L+HFRI RF+ENPKGNVKDYEDQVS S
Sbjct: 359 MAPVVGRILADLALSGEAKGVDLKHFRIQRFQENPKGNVKDYEDQVSKS 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589834|ref|XP_002535101.1| sarcosine oxidase, putative [Ricinus communis] gi|223524032|gb|EEF27281.1| sarcosine oxidase, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/408 (73%), Positives = 354/408 (86%), Gaps = 2/408 (0%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+ G +FD IV+GAGIMGS+ AY+LAKRG+KTLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSGNEFDAIVIGAGIMGSTTAYELAKRGKKTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  M +ES  LWE+AQSEIG+KVYFKA   DMGPS+NKSL SVI+SC+KNSV  QVL
Sbjct: 61  EDYYCAMAIESFPLWEEAQSEIGFKVYFKAQHLDMGPSDNKSLLSVISSCKKNSVSFQVL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
           D +QV EK+SGRI IPENW+GV+ ELGGV++PTKAVSMFQ+LA + GAVLRDN EV  + 
Sbjct: 121 DSQQVPEKFSGRINIPENWIGVSAELGGVLRPTKAVSMFQSLASRKGAVLRDNTEVNNI- 179

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            +KD V+GG+ V  +NGEKFW +KCV+TAGAWV KLVK ++GL+LPIQA+ETTVCYWRIK
Sbjct: 180 -IKDDVRGGLWVFAANGEKFWAEKCVITAGAWVRKLVKTVSGLDLPIQALETTVCYWRIK 238

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
           EG+E+++ +G DFP+FASYG PY+YGTPSLE+PGLIKIA+HGG  C+PD+RPWGP L L 
Sbjct: 239 EGHESEFTMGVDFPTFASYGQPYVYGTPSLEFPGLIKIAVHGGRACNPDKRPWGPCLTLS 298

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
           SLKEWI+  F+G VDS+GPVATQ CMYS+TPDED+VIDFLG EFG+DVVV GGFSGHGFK
Sbjct: 299 SLKEWIERTFSGLVDSDGPVATQSCMYSMTPDEDYVIDFLGEEFGKDVVVGGGFSGHGFK 358

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSF 408
           MAP +GRILADL L GEA+GV+L HF I RF++NP+GN+KDYEDQV F
Sbjct: 359 MAPVIGRILADLALDGEAKGVDLNHFSIQRFRDNPQGNMKDYEDQVDF 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121148|ref|XP_002330755.1| sarcosine oxidase [Populus trichocarpa] gi|222872557|gb|EEF09688.1| sarcosine oxidase [Populus trichocarpa]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/401 (75%), Positives = 352/401 (87%), Gaps = 3/401 (0%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME    +FDVIVVGAGIMGSS AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT+RA Y 
Sbjct: 1   MECSSHQFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTLRAAYT 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           EDYY  MV ES  +WEQAQSEIGYKVYFKA QFDM PS+NKSL S+I+SC K S+P++VL
Sbjct: 61  EDYYCDMVKESSQIWEQAQSEIGYKVYFKAQQFDMSPSDNKSLLSIISSCEKKSIPYRVL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
           D +QV +++SG I +PE+W GV T++GGVIKPTKAVSMFQ LA + GAVLRDNMEVK V 
Sbjct: 121 DRQQVSDRFSGLINLPEDWFGVLTDVGGVIKPTKAVSMFQALAFQRGAVLRDNMEVKNV- 179

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            VKD VKGGV V T++GEKFWGKKCV+TAGAWV KLVK + GLELPIQA+ETTVCYWRIK
Sbjct: 180 -VKDEVKGGVNVETADGEKFWGKKCVITAGAWVRKLVKTVGGLELPIQALETTVCYWRIK 238

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGP-GLLL 299
           EG+EA +A+G DFP+F SYG+PY++GTPSLE+PGLIKI+++GGYPCDPD+RPW P G+ L
Sbjct: 239 EGHEAKFAIGSDFPTFVSYGEPYVFGTPSLEFPGLIKISVNGGYPCDPDKRPWDPAGISL 298

Query: 300 DSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
           DSLKEWI+GRF+G VD  GPVATQ CMYS+TPDEDFV+DFLGGEFG+DVV+ GGFSGHGF
Sbjct: 299 DSLKEWIKGRFSGLVDYGGPVATQSCMYSMTPDEDFVLDFLGGEFGKDVVIGGGFSGHGF 358

Query: 360 KMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVK 400
           KMAP VGR+LADL+LSGEA+GVE+++FR  RF++NPKGNVK
Sbjct: 359 KMAPVVGRVLADLLLSGEAKGVEMKYFRAQRFQDNPKGNVK 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825429|ref|XP_002880597.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326436|gb|EFH56856.1| sarcosine oxidase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/408 (70%), Positives = 345/408 (84%), Gaps = 3/408 (0%)

Query: 1   MEFPGE-KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+ G+ +FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSGDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES  LW +AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+++ H+V
Sbjct: 61  PEDYYYAMVSESTRLWAEAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHALAHRV 120

Query: 120 LDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTV 179
           +D   V E +SGRI IPENW+GV+TELGGVIKPTKAVSMFQTLA  +GAVLRDN +V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGVIKPTKAVSMFQTLAFGHGAVLRDNTKVANI 180

Query: 180 LKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRI 239
            K     + GV V T  G+KF+GKKC+VTAGAW+ KLVK + G++ P++ +ETTVCYWRI
Sbjct: 181 -KRDGENREGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWRI 239

Query: 240 KEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLL 299
           +EG+E  + + G+FP+FASYG PY+YGTPSLEYPGLIK+A+HGGY CDPD+RPWGPG+ L
Sbjct: 240 REGHEEKFTIDGEFPTFASYGVPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKL 299

Query: 300 DSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
           + LKEWI+ RF G VDS GPVATQLCMYS+TPDEDFVIDFLGGE G DVVV GGFSGHGF
Sbjct: 300 EELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGELGRDVVVGGGFSGHGF 359

Query: 360 KMAPAVGRILADLVLSGEAQ-GVELQHFRISRFKENPKGNVKDYEDQV 406
           KMAPAVGRILAD+   GEA+ GVE++ F + RF+ENPKGNVK+Y DQV
Sbjct: 360 KMAPAVGRILADMATEGEARGGVEMKQFSLRRFEENPKGNVKEYPDQV 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224169|ref|NP_180034.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|20139956|sp|Q9SJA7.1|SOX_ARATH RecName: Full=Probable sarcosine oxidase gi|4572673|gb|AAD23888.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|17529040|gb|AAL38730.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|21436151|gb|AAM51322.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|46251338|gb|AAS84616.1| peroxisomal sarcosine/pipecolate oxidase [Arabidopsis thaliana] gi|110742357|dbj|BAE99101.1| putative sarcosine oxidase [Arabidopsis thaliana] gi|330252500|gb|AEC07594.1| putative sarcosine oxidase [Arabidopsis thaliana]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 288/414 (69%), Positives = 344/414 (83%), Gaps = 6/414 (1%)

Query: 1   MEFPGE-KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
           ME+  + +FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct: 1   MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query: 60  PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
           PEDYY+ MV ES  LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct: 61  PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query: 120 LDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTV 179
           +D   V E +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDN +V  +
Sbjct: 121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query: 180 LKVKDAVKG-GVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR 238
            +  D   G GV V T  G+KF+GKKC+VTAGAW+ KLVK + G++ P++ +ETTVCYWR
Sbjct: 181 KR--DGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWR 238

Query: 239 IKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL 298
           IKEG+E  + + G+FP+FASYG PY+YGTPSLEYPGLIK+A+HGGY CDPD+RPWGPG+ 
Sbjct: 239 IKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVK 298

Query: 299 LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHG 358
           L+ LKEWI+ RF G VDS GPVATQLCMYS+TPDEDFVIDFLGGEFG DVVV GGFSGHG
Sbjct: 299 LEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHG 358

Query: 359 FKMAPAVGRILADLVLSGEA--QGVELQHFRISRFKENPKGNVKDYEDQVSFSV 410
           FKMAPAVGRILAD+ +  EA   GVE++ F + RF++NPKGN K+Y DQV   V
Sbjct: 359 FKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDV 412

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464346|ref|XP_002272090.1| PREDICTED: probable sarcosine oxidase-like [Vitis vinifera]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/413 (68%), Positives = 342/413 (82%), Gaps = 3/413 (0%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME+ G+KFDVIV+G G+MGSS AY +AKRG  TLLLEQFDFLHHRGSSHGESRTIRATYP
Sbjct: 1   MEYSGQKFDVIVIGGGVMGSSTAYHVAKRGYTTLLLEQFDFLHHRGSSHGESRTIRATYP 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           E+YY  MV+E+  LWEQ QSE+GYKVY+K  QFDMGPS++KSLR VIA+C   S+P +VL
Sbjct: 61  ENYYFGMVVEAAKLWEQVQSEVGYKVYYKTPQFDMGPSDDKSLRCVIANCESYSMPCRVL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
           D  QV + +SG++ IPENW+GV TELGGVIKPTKAVSMFQTLA++NGAVL DNMEVK   
Sbjct: 121 DPAQVSDHFSGKMAIPENWIGVLTELGGVIKPTKAVSMFQTLALQNGAVLMDNMEVK--- 177

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            +K    GG+ V TSNG KF G KCVVT GAW+ KLVK ++G  LP+Q +ETTVCYW+IK
Sbjct: 178 DIKKDDGGGIVVHTSNGAKFCGNKCVVTVGAWMKKLVKTVSGPLLPVQPIETTVCYWKIK 237

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
           +G+  ++ +   FP+FASYG+PYIYGTPSLE+PGLIK+A+HGG+ CDPD+R WGP   L+
Sbjct: 238 DGHHGEFTIESGFPTFASYGEPYIYGTPSLEFPGLIKVAVHGGHSCDPDKRTWGPPASLE 297

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
           SLK+WI+GRF+G ++  GPVA Q CMYS+TPDEDFVIDFLGGE G+DV VAGGFSGHGFK
Sbjct: 298 SLKQWIEGRFSGLIECTGPVAIQSCMYSMTPDEDFVIDFLGGELGKDVAVAGGFSGHGFK 357

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSFSVHPQ 413
           MAP VGR LA++VL GEA+GVEL+HFR++RF+ NPKGNVK++EDQV   +  Q
Sbjct: 358 MAPLVGRTLAEMVLDGEAKGVELKHFRLARFEGNPKGNVKEFEDQVLMDIFLQ 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437334|ref|XP_004136447.1| PREDICTED: probable sarcosine oxidase-like [Cucumis sativus] gi|449515559|ref|XP_004164816.1| PREDICTED: probable sarcosine oxidase-like [Cucumis sativus]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/403 (65%), Positives = 328/403 (81%), Gaps = 4/403 (0%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           FDVIVVGAG+MGSS AY LAK G + L+LEQFDFLHHRGSSHGESRTIRATYPEDYY+ +
Sbjct: 8   FDVIVVGAGVMGSSTAYHLAKTGNRVLILEQFDFLHHRGSSHGESRTIRATYPEDYYYGL 67

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
           V+ES  LW  A+ EIGYKVYF   Q D+G  ++KSL +V+ +CRK+S+PH VLD  ++ E
Sbjct: 68  VMESYELWRMAEEEIGYKVYFPTEQLDIGSPDDKSLTAVVDTCRKHSIPHLVLDSGELRE 127

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           KYSGR+EIP +WVGV ++ GGVIKPTKAVSM+QTLA KNGAV++DN EV  +   +D   
Sbjct: 128 KYSGRVEIPADWVGVWSKYGGVIKPTKAVSMYQTLAYKNGAVMKDNAEVVEIK--RDESN 185

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
           G + V  +NGE F GKKCVVT GAW  KLVK + G+ELPI+ +E +V YWRIKEG EA+Y
Sbjct: 186 GRIVVSIANGESFRGKKCVVTVGAWSKKLVKSVGGIELPIRPLEVSVSYWRIKEGFEAEY 245

Query: 248 AVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPG--LLLDSLKEW 305
           A+GG FP+ ASYG+PY+YGTPSLE+PGLIK+A+HGG+ C+PD+R WG G  L + +LKEW
Sbjct: 246 AIGGGFPTIASYGEPYVYGTPSLEFPGLIKVAIHGGHECNPDKRSWGKGGRLPIAALKEW 305

Query: 306 IQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAV 365
           I  +F GRVDS+GPV+TQ CMYS+TPD DFVIDFLGGEF +DVV+ GGFSGHGFKM+P +
Sbjct: 306 IDEKFGGRVDSSGPVSTQSCMYSMTPDGDFVIDFLGGEFEKDVVIGGGFSGHGFKMSPTI 365

Query: 366 GRILADLVLSGEAQGVELQHFRISRFKENPKGNVKDYEDQVSF 408
           GRILA+L L G A+GVEL++F+++RF+ENPKGNVK + DQV  
Sbjct: 366 GRILAELALDGAAEGVELKYFKLARFEENPKGNVKSFADQVKL 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466531|ref|XP_003603550.1| Sarcosine oxidase [Medicago truncatula] gi|355492598|gb|AES73801.1| Sarcosine oxidase [Medicago truncatula]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 250/390 (64%), Positives = 314/390 (80%), Gaps = 5/390 (1%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP 66
           +FDVI+VGAG+MGSS AYQ AKRG KTLLLEQFDFLHHRGSSHGESRTIRATY +++Y+P
Sbjct: 5   QFDVIIVGAGVMGSSTAYQAAKRGLKTLLLEQFDFLHHRGSSHGESRTIRATYIQNHYYP 64

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           MV+ES  LW++AQ+++GY VYFKA   DMGP  +  + SV+ +CRK+ +PHQ+L+ +QV 
Sbjct: 65  MVMESYKLWKEAQAQVGYNVYFKAQHLDMGPFNDPVVHSVVENCRKHKIPHQLLNHQQVA 124

Query: 127 EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV 186
           EK+SG+  +P NWVG++TE GG++KPTKA +MFQTLA KNGAVL+DN +V  +       
Sbjct: 125 EKFSGKFNLPANWVGLSTEYGGILKPTKATAMFQTLAYKNGAVLKDNTKVTDIKN----- 179

Query: 187 KGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEAD 246
            GGV V T+NGEKF GKKCVVT GAW  KLVKRI+G+E+PI+ VET VCYWRIK+G+E  
Sbjct: 180 DGGVVVFTANGEKFRGKKCVVTVGAWANKLVKRISGVEIPIKPVETHVCYWRIKKGHEGK 239

Query: 247 YAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWI 306
           + +GGDFP+FAS+G  Y+YGTP LEYPGLIK A+HGG  CDPD+RPWG  ++++ LKEW+
Sbjct: 240 FVIGGDFPTFASFGKAYVYGTPVLEYPGLIKAAVHGGRLCDPDKRPWGSVVMMNELKEWV 299

Query: 307 QGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVG 366
           +G F G VDS+ PV  Q CMYS+TPDEDFVIDFLGGEFG++VV+  GFSGHGFKMAP +G
Sbjct: 300 EGIFGGVVDSSEPVVKQSCMYSMTPDEDFVIDFLGGEFGKNVVLGVGFSGHGFKMAPVIG 359

Query: 367 RILADLVLSGEAQGVELQHFRISRFKENPK 396
           +IL  LV+ GE   V+L+HFRI RF+   K
Sbjct: 360 KILTQLVVDGETNEVDLKHFRIGRFQMASK 389

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466535|ref|XP_003603552.1| Sarcosine oxidase [Medicago truncatula] gi|355492600|gb|AES73803.1| Sarcosine oxidase [Medicago truncatula]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 244/394 (61%), Positives = 316/394 (80%), Gaps = 4/394 (1%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME  G  +DVI+VGAG+MGSS AY  AKRG KTL+LEQFDFLHHRGSSHGESRTIRA YP
Sbjct: 1   MESSGSDYDVIIVGAGVMGSSTAYYAAKRGLKTLVLEQFDFLHHRGSSHGESRTIRAAYP 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           + +Y  MV++S  LWE+AQ++ G+ VY+KAH FDMG S +  + SV+ +CR+N++P Q+L
Sbjct: 61  QQHYCQMVMKSYQLWEEAQAQAGFNVYYKAHHFDMGSSNDPMILSVVENCRQNNLPCQLL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
              QV EK+SGRI+IP++WVG++TE GGVIK TKAV+MFQ+LA  +GAVL DN+EV   +
Sbjct: 121 RREQVAEKFSGRIDIPDDWVGLSTEYGGVIKATKAVTMFQSLARSHGAVLNDNVEV---V 177

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            +K+   G V ++T+ GEKF GKKCVVT GAWV KLVK+I+G+E+PIQ +ET +CYWRIK
Sbjct: 178 DIKND-GGSVVILTAKGEKFRGKKCVVTVGAWVNKLVKKISGVEIPIQPLETHLCYWRIK 236

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
           EG++  + +GGDFP+FAS G   +YG+PS E+PGLIK+A+HGG  CDPD+RPWG G+++D
Sbjct: 237 EGHQGKFTIGGDFPTFASLGRVLLYGSPSFEFPGLIKVAVHGGNLCDPDKRPWGAGVMMD 296

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
            +KEW++GRF G VDS+ PV  Q CMYS+TPDEDFVIDFLGGEF ++VV+  GFSGHGFK
Sbjct: 297 EMKEWVEGRFCGLVDSSEPVVKQACMYSMTPDEDFVIDFLGGEFEKNVVLGAGFSGHGFK 356

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKEN 394
           MAP +G+IL +LV+ G    V+L+HFRI RFK +
Sbjct: 357 MAPVIGKILTELVVDGGTNEVDLKHFRIGRFKSD 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495658|gb|AFK35895.1| unknown [Medicago truncatula]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 243/394 (61%), Positives = 315/394 (79%), Gaps = 4/394 (1%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           ME  G  +DVI+VGAG+MGSS AY  AKRG KTL+LEQFDFLHHRGSSHGESRTIRA YP
Sbjct: 1   MESSGSDYDVIIVGAGVMGSSTAYYAAKRGLKTLVLEQFDFLHHRGSSHGESRTIRAAYP 60

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
           + +Y  MV++S  LWE+AQ++ G+ VY+KAH FDMG S +  + SV+ +CR+N++P Q+L
Sbjct: 61  QQHYCQMVMKSYQLWEEAQAQAGFNVYYKAHHFDMGSSNDPMILSVVENCRQNNLPCQLL 120

Query: 121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
              QV EK+SGRI+IP++WVG++TE GGVIK TKAV+MFQ+LA  +GAVL DN+EV   +
Sbjct: 121 RREQVAEKFSGRIDIPDDWVGLSTEYGGVIKATKAVTMFQSLARSHGAVLNDNVEV---V 177

Query: 181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
            +K+   G V ++T+ GEKF GKKCVVT GAWV KLVK+I+G+E+PIQ +ET +CYWRIK
Sbjct: 178 DIKND-GGSVVILTAKGEKFRGKKCVVTVGAWVNKLVKKISGVEIPIQPLETHLCYWRIK 236

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
           EG++  + +GGDFP+FAS G   +YG+PS E+PGLIK+A+HGG  CDPD+RPWG G+++D
Sbjct: 237 EGHQGKFTIGGDFPTFASLGRVLLYGSPSFEFPGLIKVAVHGGNLCDPDKRPWGAGVMMD 296

Query: 301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
            +KEW++GRF G VDS+ PV  Q CMYS+TPDEDFVIDFLGGEF ++VV+  GFSGHGFK
Sbjct: 297 EMKEWVEGRFCGLVDSSEPVVKQACMYSMTPDEDFVIDFLGGEFEKNVVLGAGFSGHGFK 356

Query: 361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKEN 394
           MAP +G+IL +LV+ G    V+L+HF I RFK +
Sbjct: 357 MAPVIGKILTELVVDGGTNEVDLKHFTIGRFKSD 390

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2046643	416	AT2G24580 [Arabidopsis thalian	0.987	0.980	0.695	3.1e-161
ZFIN|ZDB-GENE-110627-2	415	pipox "pipecolic acid oxidase"	0.929	0.925	0.361	1.4e-62
UNIPROTKB|F1RN92	392	PIPOX "Uncharacterized protein	0.920	0.969	0.366	2.3e-62
UNIPROTKB|Q29RU9	392	PIPOX "Peroxisomal sarcosine o	0.917	0.966	0.368	4.5e-59
UNIPROTKB|Q9P0Z9	390	PIPOX "Peroxisomal sarcosine o	0.915	0.969	0.365	1.9e-58
UNIPROTKB|P79371	390	PIPOX "Peroxisomal sarcosine o	0.915	0.969	0.360	1.4e-57
RGD|1311347	390	Pipox "pipecolic acid oxidase"	0.910	0.964	0.345	2.5e-56
MGI|MGI:1197006	390	Pipox "pipecolic acid oxidase"	0.907	0.961	0.35	2.3e-55
UNIPROTKB|E2R6W0	392	PIPOX "Uncharacterized protein	0.893	0.941	0.338	1.9e-53
WB|WBGene00015788	385	C15B12.8 [Caenorhabditis elega	0.912	0.979	0.305	3.5e-43

TAIR|locus:2046643 AT2G24580 [Arabidopsis thaliana (taxid:3702)]

 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 288/414 (69%), Positives = 344/414 (83%)

Query:     1 MEFPGE-KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
             ME+  + +FDVIVVGAG+MGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY
Sbjct:     1 MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY 60

Query:    60 PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQV 119
             PEDYY+ MV ES  LW  AQSEIGYKV+F   QFDMGP++ +SL SV+A+C+K+ + H+V
Sbjct:    61 PEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSLLSVVATCQKHGLAHRV 120

Query:   120 LDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTV 179
             +D   V E +SGRI IPENW+GV+TELGG+IKPTKAVSMFQTLAI +GA+LRDN +V  +
Sbjct:   121 MDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTLAIGHGAILRDNTKVANI 180

Query:   180 LKVKDAVKG-GVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR 238
              +  D   G GV V T  G+KF+GKKC+VTAGAW+ KLVK + G++ P++ +ETTVCYWR
Sbjct:   181 KR--DGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAGIDFPVEPLETTVCYWR 238

Query:   239 IKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL 298
             IKEG+E  + + G+FP+FASYG PY+YGTPSLEYPGLIK+A+HGGY CDPD+RPWGPG+ 
Sbjct:   239 IKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVK 298

Query:   299 LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHG 358
             L+ LKEWI+ RF G VDS GPVATQLCMYS+TPDEDFVIDFLGGEFG DVVV GGFSGHG
Sbjct:   299 LEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHG 358

Query:   359 FKMAPAVGRILADLVLSGEAQG--VELQHFRISRFKENPKGNVKDYEDQVSFSV 410
             FKMAPAVGRILAD+ +  EA G  VE++ F + RF++NPKGN K+Y DQV   V
Sbjct:   359 FKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDV 412

GO:0005737 "cytoplasm" evidence=ISM

GO:0008115 "sarcosine oxidase activity" evidence=IEA;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-110627-2 pipox "pipecolic acid oxidase" [Danio rerio (taxid:7955)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 146/404 (36%), Positives = 218/404 (53%)

Query:     1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
             +E   + FD IV+GAGI GS  AYQLAK  QKTLLLEQF   H RGSSHG++R IR  Y 
Sbjct:    27 LEMSSKVFDCIVIGAGIQGSCTAYQLAKNKQKTLLLEQFVLPHSRGSSHGQTRIIRKAYE 86

Query:    61 EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
             ED+Y  M+ ES  LW + + E G ++Y +     MGP +++    +  + +++ +P   L
Sbjct:    87 EDFYTQMMQESYELWAELEKEAGVELYRRTGLLVMGPEKSEGFSKLKDTMQRHKIPTVFL 146

Query:   121 DCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVL 180
             + +Q   ++   + + E    +     GV+   +++   Q L   +G VL+D    +TV 
Sbjct:   147 E-KQEFNEHISNVNLSEGNGALIDTFAGVLYAERSLQAVQRLFQCSGGVLKDG---QTVT 202

Query:   181 KVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK 240
              V     G V  V++    + GK  V+TAG W   L+    GL+LP++ V+  VCYW  K
Sbjct:   203 GVSP---GAVVTVSTGSAVYRGKSVVITAGPWANTLLAH-AGLQLPLKVVKINVCYW--K 256

Query:   241 EGNEADYAVGGDFPSFASY----GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPG 296
             E     Y+V   FP F       G+  IYG PS EYPGL+K+  H G   DPD R     
Sbjct:   257 EKIPGTYSVDQSFPCFIQMEPKEGEYDIYGLPSNEYPGLMKVCYHMGSETDPDERDKQTD 316

Query:   297 LL-LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
                +D L  ++     G V +  P   + CMY++TPD  FV+D     +G ++++  GFS
Sbjct:   317 RGDIDILARYVTRCLPGLVPA--PAVVESCMYTVTPDHHFVLDS-HPSYG-NIIIGAGFS 372

Query:   356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             GHGFK +P +G++L+ L + G+    +L  FRI RF+   K ++
Sbjct:   373 GHGFKFSPIIGKVLSQLAM-GQVPSHDLSPFRIQRFQSQSKSSL 415

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1RN92 PIPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 147/401 (36%), Positives = 219/401 (54%)

Query:     6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
             E +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  YPED+Y 
Sbjct:     6 ELYDAIVIGAGIQGCFTAYHLAKHSRRVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYT 65

Query:    66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
              M+ E   +W Q Q E G ++Y +     +G  EN  L+++ A+  ++ V HQ L   ++
Sbjct:    66 EMMAECYRIWAQLQHEAGTQLYRQTGLLLLGMKENPELKTIQATLSRHGVEHQYLPSEEL 125

Query:   126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
              +++   I++    VG+  + GGV+   KA+ + Q    + G ++ D    + V+++K  
Sbjct:   126 KQRFPN-IQLARGEVGLLDKSGGVLYADKALRVLQDAIRQLGGIVHDG---EKVMEIKPG 181

Query:   186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
             +     VV +    +  +  ++TAG W  +L++ + GLELP+Q +   VCYW  KE    
Sbjct:   182 LP---VVVKTTSSSYQARSLIITAGPWTNRLLRPL-GLELPLQTLRINVCYW--KEKAPG 235

Query:   246 DYAVGGDFPSFASYG---DPY-IYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS 301
              Y+V   FP F   G    P+ IYG PS EYPGL+K+  H G   DP+ R   P    D 
Sbjct:   236 SYSVSQAFPCFLGLGLSLAPHHIYGLPSREYPGLVKVCYHHGNNADPEERDC-PTAFADI 294

Query:   302 LKEWIQGRFAGRV--DSNG-PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHG 358
                 I  RF   +  D    P   + CMY+ TPDE F++D    ++  ++V+  GFSGHG
Sbjct:   295 QDVHILSRFVRDLLPDLEPEPAIMEHCMYTNTPDEHFILD-RHPKYN-NIVIGAGFSGHG 352

Query:   359 FKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             FK++P VG+IL +L +       +L  FRISRF    K ++
Sbjct:   353 FKLSPIVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

UNIPROTKB|Q29RU9 PIPOX "Peroxisomal sarcosine oxidase" [Bos taurus (taxid:9913)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 148/402 (36%), Positives = 212/402 (52%)

Query:     6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
             E +D IV+GAGI G   AY LAK  +K LLLEQF   H RGSSHG+SR IR  YPED+Y 
Sbjct:     6 ELYDAIVIGAGIQGCFTAYHLAKHSKKVLLLEQFFLPHSRGSSHGQSRIIRRAYPEDFYT 65

Query:    66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
              M+ E   LW Q + E G ++Y +     +G  EN  L+ + A+  +  V HQ L   ++
Sbjct:    66 QMMAECYSLWAQLEHEAGTQLYRQTGLLLLGMKENPELKIIQATLSRQGVEHQCLSSEEL 125

Query:   126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
              +++   I +    VG+    GGV+   KA+   Q    + G ++ D  +V     V+  
Sbjct:   126 KQRFPN-IRLARGEVGLLEVSGGVLYADKALRALQDAIRQLGGIVHDGEKV-----VE-- 177

Query:   186 VKGGVTV-VTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
             +K G+ V V +    +  K  ++TAG W  +L++ + G ELP+Q +   VCYW+ K    
Sbjct:   178 IKSGLPVMVKTTSRSYQAKSLIITAGPWTNRLLRPL-GAELPLQTLRINVCYWQEKV--P 234

Query:   245 ADYAVGGDFPSFASYG---DPY-IYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD 300
               Y+V   FP F   G    P+ IYG PS EYPGL+K+  H G   DP+ R   P    D
Sbjct:   235 GSYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-PAAFSD 293

Query:   301 SLKEWIQGRFAGR--VDSNG-PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGH 357
                  I   F      D    P   + CMY+ TPD  FV+D    ++ +++V+  GFSGH
Sbjct:   294 IQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD-RHPKY-DNIVIGAGFSGH 351

Query:   358 GFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             GFK++P VG+IL +L +       +L  FRISRF    K ++
Sbjct:   352 GFKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392

GO:0005777 "peroxisome" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

UNIPROTKB|Q9P0Z9 PIPOX "Peroxisomal sarcosine oxidase" [Homo sapiens (taxid:9606)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 145/397 (36%), Positives = 216/397 (54%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G   AY LAK  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query:    68 VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
             + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ +
Sbjct:    68 MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query:   128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
             ++   I +P   VG+    GGVI   KA+   Q    + G ++RD    + V+++   + 
Sbjct:   128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDG---EKVVEINPGLL 183

Query:   188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
               VTV T++   +  K  V+TAG W  +L++ + G+E+P+Q +   VCYWR  E     Y
Sbjct:   184 --VTVKTTS-RSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query:   248 AVGGDFPSFASYG--DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW 305
              V   FP F   G    +IYG P+ EYPGL+K++ H G   DP+ R   P    D     
Sbjct:   238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDC-PTARTDIGDVQ 296

Query:   306 IQGRFAGR--VDSNG-PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMA 362
             I   F      D    P   + CMY+ TPDE F++D    ++ +++V+  GFSGHGFK+A
Sbjct:   297 ILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILD-RHPKY-DNIVIGAGFSGHGFKLA 354

Query:   363 PAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             P VG+IL +L +       +L  FRISRF    K ++
Sbjct:   355 PVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IDA;NAS

GO:0005777 "peroxisome" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0008115 "sarcosine oxidase activity" evidence=IDA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

UNIPROTKB|P79371 PIPOX "Peroxisomal sarcosine oxidase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 143/397 (36%), Positives = 214/397 (53%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G    Y L K  ++ LLLEQF   H RGSSHG+SR IR  Y ED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTVYHLVKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRM 67

Query:    68 VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
             + E   +W Q + E G +++ +     +G  EN+ L+++ A+  +  V HQ L   ++ +
Sbjct:    68 MHECYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQ 127

Query:   128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
             ++   I +P   VG+    GGVI   KA+   Q    + G ++RD    + V+++   + 
Sbjct:   128 RFPN-IRLPRGEVGLLDNSGGVIYAYKALRALQDAIRQLGGIVRDG---EKVVEINPGLL 183

Query:   188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
               VTV T++   +  K  V+TAG W  +L++ + G+E+P+Q +   VCYWR  E     Y
Sbjct:   184 --VTVKTTS-RSYQAKSLVITAGPWTNQLLRPL-GIEMPLQTLRINVCYWR--EMVPGSY 237

Query:   248 AVGGDFPSFASYG--DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW 305
              V   FP F   G    +IYG P+ EYPGL+K++ H G   DP+ R   P    D     
Sbjct:   238 GVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDC-PTARTDIGDVQ 296

Query:   306 IQGRFAGR--VDSNG-PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMA 362
             I   F      D    P   + CMY+ TPDE F++D    ++ +++V+  GFSGHGFK+A
Sbjct:   297 ILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILD-RHPKY-DNIVIGAGFSGHGFKLA 354

Query:   363 PAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             P VG+IL +L +       +L  FRISRF    K ++
Sbjct:   355 PVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390

GO:0005777 "peroxisome" evidence=ISS

GO:0008115 "sarcosine oxidase activity" evidence=ISS

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=ISS

GO:0050031 "L-pipecolate oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

RGD|1311347 Pipox "pipecolic acid oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 138/399 (34%), Positives = 218/399 (54%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAG+ G   AY LA+  +K LLLEQF   H RGSSHG+SR IR  YPED+Y  M
Sbjct:     8 WDAIVIGAGVQGCFTAYHLAQNSKKVLLLEQFLLPHSRGSSHGQSRIIRKAYPEDFYTRM 67

Query:    68 VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
             + E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + +
Sbjct:    68 MDECYRTWAQLEREAGAQLHRRTELLFLGMKENPGLKTIQATLSRQGIDHECLSSVHLKQ 127

Query:   128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
             ++   I   +  VG+  + GGV+   KA+   Q +  + G ++ D    + V++++  + 
Sbjct:   128 RFPN-IRFTKGEVGLLDKTGGVLYADKALRALQHVIRQLGGMVCDG---EKVVEIRPGLP 183

Query:   188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
               VTV T+  + +     V+TAG W  ++++ + G+ELP+Q +   VCYWR K      Y
Sbjct:   184 --VTVKTTL-KSYQANSLVITAGPWTNRILRPL-GIELPLQTLRINVCYWREKV--PGSY 237

Query:   248 AVGGDFPSFASYG-DPY-IYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS---- 301
             +V   FP   S    P+ IYG P+ EYPGL+K+  H G   DP+ R   P    D     
Sbjct:   238 SVSQAFPCILSLDLAPHHIYGLPASEYPGLMKVCYHHGDSVDPEERDC-PKTFSDIQDVQ 296

Query:   302 -LKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFK 360
              L  +++    G      P   + CMY+ TPDE F++D    ++ +++V+  GFSGHGFK
Sbjct:   297 ILCHFVKDHLPGLRPE--PDIMERCMYTNTPDEHFILD-CHPKY-DNIVIGAGFSGHGFK 352

Query:   361 MAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             +APAVG++L +L +       +L  FRISRF +  K ++
Sbjct:   353 LAPAVGKVLYELSMK-LPPSYDLAPFRISRFSKLSKAHL 390

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0008115 "sarcosine oxidase activity" evidence=IEA;ISO

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

MGI|MGI:1197006 Pipox "pipecolic acid oxidase" [Mus musculus (taxid:10090)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 140/400 (35%), Positives = 212/400 (53%)

Query:     8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
             +D IV+GAGI G   AY LAK  +  LLLEQF   H RGSSHG+SR IR  YPED+Y  M
Sbjct:     8 WDAIVIGAGIQGCFTAYHLAKHSKSVLLLEQFFLPHSRGSSHGQSRIIRKAYPEDFYTMM 67

Query:    68 VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
             + E    W Q + E G +++ +     +G  EN  L+++ A+  +  + H+ L    + +
Sbjct:    68 MKECYQTWAQLEREAGTQLHRQTELLLLGTKENPGLKTIQATLSRQGIDHEYLSSVDLKQ 127

Query:   128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
             ++   I      VG+  + GGV+   KA+   Q +  + G  + D    + V++++  + 
Sbjct:   128 RFPN-IRFTRGEVGLLDKTGGVLYADKALRALQHIICQLGGTVCDG---EKVVEIRPGLP 183

Query:   188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
               VTV T+  + +     V+TAG W  +L+  + G+ELP+Q +   VCYWR K      Y
Sbjct:   184 --VTVKTTL-KSYQANSLVITAGPWTNRLLHPL-GIELPLQTLRINVCYWREKV--PGSY 237

Query:   248 AVGGDFPSFASYG-DPY-IYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS---- 301
              V   FP        P+ IYG P+ EYPGL+KI  H G   DP+ R   P    D     
Sbjct:   238 GVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDPEERDC-PKTFSDIQDVQ 296

Query:   302 -LKEWIQGRFAG-RVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
              L  +++    G R +   P   + CMY+ TPDE F++D    ++ +++V+  GFSGHGF
Sbjct:   297 ILCHFVRDHLPGLRAE---PDIMERCMYTNTPDEHFILD-CHPKY-DNIVIGAGFSGHGF 351

Query:   360 KMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNV 399
             K+AP VG+IL +L +       +L  FR+SRF    K ++
Sbjct:   352 KLAPVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0008115 "sarcosine oxidase activity" evidence=ISO;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=ISO;ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

GO:0050031 "L-pipecolate oxidase activity" evidence=ISO;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO;ISS

UNIPROTKB|E2R6W0 PIPOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 132/390 (33%), Positives = 203/390 (52%)

Query:     9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
             D IV+GAGI G   AY LAK  +K +LLEQF   H RGSSHG+SR IR  Y ED+Y  M+
Sbjct:     9 DAIVIGAGIQGCFTAYHLAKHRKKVILLEQFFLPHSRGSSHGQSRIIRRAYLEDFYTQMM 68

Query:    69 LESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEK 128
              E   +W Q + E   +++ +     +G  EN  L+++ A+  ++ V HQ     ++ ++
Sbjct:    69 DECYQIWAQLEHEAETQLHRQTGLLMLGMKENSELKTIQATLSRHRVEHQYFSAEELKQR 128

Query:   129 YSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKG 188
             +   +++    VG+  + GGV+   +A+   Q    + G  + D    + V+++K  +  
Sbjct:   129 FPN-VQLARGEVGLLEKSGGVLYADRALRALQDAIRRLGGQVHDG---EKVMEIKPGLP- 183

Query:   189 GVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYA 248
                +V S    +  K  ++T G W  +L++ + G+ELP+Q +   VCYW   E     Y 
Sbjct:   184 --VIVKSTSRSYQAKSLIITVGPWTNRLLRPL-GIELPLQTLRINVCYW--PEKVPGSYG 238

Query:   249 VGGDFPSFA----SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKE 304
             V   FP F     S    +IYG PS EYPGL+K+  H G   DP+ R   P    D    
Sbjct:   239 VSQAFPCFLVLDLSLTPHHIYGLPSGEYPGLMKVCYHHGNNADPEERDC-PEAFSDIQDV 297

Query:   305 WIQGRFAGR--VDSNG-PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKM 361
              I  RF      D    P   + C+Y+ TPD   ++D    ++ +++V+  GFSGHGFK+
Sbjct:   298 QILSRFIRDHLPDLEPKPAILEHCLYTNTPDGHCILD-RHPKY-DNIVIGAGFSGHGFKL 355

Query:   362 APAVGRILADLVLSGEAQGVELQHFRISRF 391
             AP VG+IL +L +       +L  FR+SRF
Sbjct:   356 APVVGKILCELSMK-LTPSYDLTPFRMSRF 384

GO:0050031 "L-pipecolate oxidase activity" evidence=IEA

GO:0033514 "L-lysine catabolic process to acetyl-CoA via L-pipecolate" evidence=IEA

GO:0008115 "sarcosine oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IEA

WB|WBGene00015788 C15B12.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 121/396 (30%), Positives = 192/396 (48%)

Query:     5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY 64
             G+ +DVIVVGAGI GS  AY   + G +TLLLEQ+   H  GSSHG+SR IR  + +  Y
Sbjct:     3 GKAYDVIVVGAGIFGSCTAYHCQRLGLRTLLLEQYSLGHSNGSSHGKSRIIRYAHTDPEY 62

Query:    65 HPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
              P+V +S L  E+ + + G K++ K     +  +    + S+    +K+++ H+VL   +
Sbjct:    63 VPLVGDSYLQIEELEKKRGEKLWNKLGL--LWAATGNQVDSISGHLKKHNIDHEVLPGTK 120

Query:   125 VLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD 184
             + E+Y  + +  + W  +   +GGVI   K +  FQ   I  G  ++DN  V +  +  +
Sbjct:   121 ITERYP-QFKFDDKWTALIDPMGGVIYANKWLKAFQEEFITLGGTIQDNEPVISYGETDN 179

Query:   185 AVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
              +   V V TS GE +   K + T G W+ K    +      I+ +   VCYW  K+   
Sbjct:   180 VI---VNVKTSTGE-YKTNKIIFTVGCWITKFFPNVN---FQIKPISLAVCYWNAKDEKN 232

Query:   245 ADYAVGGDFPSFASYG---DPYIYGTPSLEYPGLIKIALHGGYPCDPD-RRPWGPGLLLD 300
                     FP   +       Y +  P  +YPG IK+ L  G     D   P      L 
Sbjct:   233 NHLLDEKHFPVVIAKNLEKKEYFFALPDTDYPGAIKLVLDEGDDLAGDLSHPTKNNQELV 292

Query:   301 SLK-EWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
             ++   +I+      +D + P     C Y+ +PD  ++I  +  E    ++V G  SG GF
Sbjct:   293 TIPGSFIKDHIPV-IDGSSPYKVDQCKYTNSPDHHYLIGPVSSE-NSKILVGGCGSGSGF 350

Query:   360 KMAPAVGRILADLVLSGEAQGVELQHFRISRFKENP 395
             K AP +GR LA++  +G++  V++  F  SRF E P
Sbjct:   351 KTAPGIGRSLAEMA-AGKSTTVDVTFFSPSRF-ETP 384

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9D826	SOX_MOUSE	1, ., 5, ., 3, ., 7	0.3433	0.9104	0.9641	yes	no
P79371	SOX_RABIT	1, ., 5, ., 3, ., 7	0.3576	0.9152	0.9692	yes	no
Q9P0Z9	SOX_HUMAN	1, ., 5, ., 3, ., 7	0.3627	0.9152	0.9692	yes	no
Q29RU9	SOX_BOVIN	1, ., 5, ., 3, ., 7	0.3631	0.9176	0.9668	yes	no
Q9SJA7	SOX_ARATH	1, ., 5, ., 3, ., 1	0.6956	0.9878	0.9807	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.5.3.1	0.824
3rd Layer	1.5.3	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
TIGR01377	380	TIGR01377, soxA_mon, sarcosine oxidase, monomeric	1e-170
PRK11259	376	PRK11259, solA, N-methyltryptophan oxidase; Provis	1e-88
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	5e-37
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	4e-28
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	9e-13
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	1e-09
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	2e-08
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	2e-06
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	4e-06
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	7e-06
COG0445	621	COG0445, GidA, Flavin-dependent tRNA uridine 5-car	1e-05
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	2e-05
PRK05192	618	PRK05192, PRK05192, tRNA uridine 5-carboxymethylam	3e-05
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	4e-05
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	7e-05
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	1e-04
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	1e-04
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	1e-04
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	2e-04
PRK10015	429	PRK10015, PRK10015, oxidoreductase; Provisional	3e-04
pfam01946	229	pfam01946, Thi4, Thi4 family	3e-04
PRK05335	436	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransfe	3e-04
COG1206	439	COG1206, Gid, NAD(FAD)-utilizing enzyme possibly i	3e-04
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	4e-04
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	6e-04
COG3573	552	COG3573, COG3573, Predicted oxidoreductase [Genera	6e-04
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	6e-04
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	7e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	9e-04
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	9e-04
TIGR02730	493	TIGR02730, carot_isom, carotene isomerase	0.001
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	0.001
TIGR03378	419	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d	0.001
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	0.001
TIGR00292	254	TIGR00292, TIGR00292, thiazole biosynthesis enzyme	0.001
PLN02985	514	PLN02985, PLN02985, squalene monooxygenase	0.002
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.003
TIGR00136	617	TIGR00136, gidA, glucose-inhibited division protei	0.003
PRK10157	428	PRK10157, PRK10157, putative oxidoreductase FixC;	0.003
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.003
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.004
TIGR00031	377	TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu	0.004

>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form

 Score =  480 bits (1236), Expect = e-170
 Identities = 165/394 (41%), Positives = 232/394 (58%), Gaps = 18/394 (4%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           FDVIVVGAGIMG  AAY LAK G+KTLLLEQFD  H RGSSHG+SR IR  YPED+Y PM
Sbjct: 1   FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPM 60

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
           +LE   LW Q + E G K++ +     +GP EN+ L+++ A+  ++ + H++L  +Q+ +
Sbjct: 61  MLECYQLWAQLEKEAGTKLHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQ 120

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           ++   I +P N VG+    GGV+   KA+   Q LA  +GA +RD  +V  +        
Sbjct: 121 RFP-NIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEI-----EPT 174

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY 247
             +  V +    +   K VVTAGAW  KL+  + G+E+P+Q +   VCYWR KE     Y
Sbjct: 175 ELLVTVKTTKGSYQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGS--Y 231

Query: 248 AVGGDFPSFASYG-DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL---LDSLK 303
            V   FP F   G +P+IYG PS EYPGL+K+  H G   DPD R    G     +  L+
Sbjct: 232 GVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILR 291

Query: 304 EWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAP 363
           ++++    G      P   ++CMY+ TPDE FVID    ++ ++VV+  GFSGHGFK+AP
Sbjct: 292 KFVRDHLPGLNG--EPKKGEVCMYTNTPDEHFVIDLH-PKY-DNVVIGAGFSGHGFKLAP 347

Query: 364 AVGRILADLVLSGEAQGVELQHFRISRFKENPKG 397
            VG+ILA+L +  +    +L  F ++RF    K 
Sbjct: 348 VVGKILAELAMKLKP-SYDLAIFSLNRFALKKKA 380

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 380

>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional

 Score =  273 bits (700), Expect = 1e-88
 Identities = 144/397 (36%), Positives = 211/397 (53%), Gaps = 35/397 (8%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YY 64
            ++DVIV+G G MGS+A Y LA+RG + L L++F   H +GSSHG++R IR  Y E   Y
Sbjct: 2   MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAY 61

Query: 65  HPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
            P+VL +  LW + + E G  ++ +    ++GP+++  L + I S R++ +PH+VLD  +
Sbjct: 62  VPLVLRAQELWRELERESGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAE 121

Query: 125 VLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD 184
           +  ++     +P+ ++ +    GG ++P  A+     LA + GA L  N  V  +    +
Sbjct: 122 IRRRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAI----E 176

Query: 185 AVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
           A   GVTV T++G  +  KK VV+AGAWV  L+     LELP+      V  W      +
Sbjct: 177 ADGDGVTVTTADGT-YEAKKLVVSAGAWVKDLLPP---LELPLT-PVRQVLAWF-----Q 226

Query: 245 AD--YAVGGDFPSF---ASYGDPYIYGTPSLEYPGLIKIALH--GGYPCDPDRRPWGPGL 297
           AD  Y+    FP+F      GD Y YG P+   PGL KI  H  G     PD R     +
Sbjct: 227 ADGRYSEPNRFPAFIWEVPDGDQY-YGFPAENGPGL-KIGKHNGGQEITSPDERDRFVTV 284

Query: 298 LLDS--LKEWIQGRFAGRVDSNGP-VATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGF 354
             D   L+ +++    G     GP +    C Y+ TPDE F+ID L G    +V+VA G 
Sbjct: 285 AEDGAELRPFLRNYLPG----VGPCLRGAACTYTNTPDEHFIIDTLPGH--PNVLVASGC 338

Query: 355 SGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF 391
           SGHGFK A  +G ILADL   G +   +L  F +SRF
Sbjct: 339 SGHGFKFASVLGEILADLAQDGTSD-FDLSPFSLSRF 374

Length = 376

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score =  138 bits (349), Expect = 5e-37
 Identities = 98/396 (24%), Positives = 148/396 (37%), Gaps = 27/396 (6%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-- 63
            K DV+++G GI+G SAAY LA+RG    +LE  +     G++   +  I A +      
Sbjct: 3   MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGE 60

Query: 64  --YHPMVLESCLLWEQAQSEIGYKVYFKAH-----QFDMGPSENKSLRSVIASCRKNSVP 116
               P+   S  LW +   E+G     +           G      L  + A        
Sbjct: 61  LEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGED 120

Query: 117 HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEV 176
            ++LD      +    +       G+    GG + P          A + G V+    E 
Sbjct: 121 AELLD-AAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVII---EG 176

Query: 177 KTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCY 236
            T +   +     V V T  G      K V+ AGAW G+L   +  L LP++ V      
Sbjct: 177 GTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLGELPLPLRPVRGQALT 235

Query: 237 WRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPG 296
               EG  AD              D   Y  P  +  G +++        D    P    
Sbjct: 236 TEPPEGLLADGLAPVVLVVD----DGGGYIRPRGD--GRLRVGGTDEEGGDDPSDPERED 289

Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSIT-PDEDFVIDFLGGEFGEDVVVAGGFS 355
           L++  L    +    G +   G  A    +   T PD   VI         ++ VA G  
Sbjct: 290 LVIAELLRVARALLPG-LADAGIEAAWAGLRPPTTPDGLPVIGRAAP--LPNLYVATGHG 346

Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF 391
           GHGF +APA+GR+LADL+L GE   ++L+   + RF
Sbjct: 347 GHGFTLAPALGRLLADLILGGEP-ELDLRPLLLDRF 381

Length = 387

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score =  110 bits (277), Expect = 4e-28
 Identities = 58/207 (28%), Positives = 89/207 (42%), Gaps = 16/207 (7%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYH 65
           DV+V+G GI+G S AY+LA+RG    LLE+ D     G+S   +  +             
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS--GASGRNAGLLHPGLRKERAPLLA 58

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAH---QFDMGPSENKSLRSVIASCRKNSVPHQVLDC 122
            + LES  LW +   E+G    F+           +E  +LR + A+ R   +P ++LD 
Sbjct: 59  RLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELLDA 118

Query: 123 RQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKV 182
            ++ E   G    P    G+    GG + P + +      A   G  + +  EV  + + 
Sbjct: 119 EELRELEPGL--SPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLER- 175

Query: 183 KDAVKGGVTVVTSNGEKFWGKKCVVTA 209
                GGVTV T +GE       VV A
Sbjct: 176 ---EGGGVTVETEDGE--IRADKVVNA 197

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 69.2 bits (170), Expect = 9e-13
 Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 35/223 (15%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDFLHHRGSSHGESRTIRATYPEDY 63
             +DV+++G GIMG++ AY+L++        LLE+ D +  + SS   S  I A     Y
Sbjct: 2   MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV-AQESSSNNSGVIHAGL---Y 57

Query: 64  YHPMVLES--CLLWEQAQSEIGYKVYFKAHQFD----------MGPSENKSLRSVIASCR 111
           Y P  L++  C+               K                G  E + L  +    +
Sbjct: 58  YTPGSLKAKLCVAGNIN-----EFAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGK 112

Query: 112 KNSVPH-QVLDCRQVLEKYSGRIE---IPENWVGVATELGGVIKPTKAVSMFQTLAIKNG 167
            N V   ++LD  ++ E      E          +    GG++ P +        A  NG
Sbjct: 113 ANGVFDLEILDKEEIKEL-----EPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANG 167

Query: 168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAG 210
             LR N EV  + K  D   G   + TSNGE+    K V+ A 
Sbjct: 168 VELRLNTEVTGIEKQSD---GVFVLNTSNGEETLEAKFVINAA 207

Length = 429

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 60/241 (24%), Positives = 91/241 (37%), Gaps = 43/241 (17%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH--RGSS---HGESRTI 55
                E+FDVIV+G GI G+  A   A RG K  L+E+ D        S+   HG  R  
Sbjct: 6   TRLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLR-- 63

Query: 56  RATYPEDYYHPMVLESCL-----LWEQAQSEI--------GYKVYFKAHQFDMGPSENKS 102
              Y E Y   +V E  L     L   A   +               A     G      
Sbjct: 64  ---YLEQYEFSLVRE-ALAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAG----LF 115

Query: 103 LRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATEL-GGVIKPTKAVSMFQT 161
           L   +A  RK     +VLD ++ L        + ++ +  A     GV+   + V+    
Sbjct: 116 LYDHLAGIRKLLPASRVLDPKEALPLEPA---LKKDGLKGAFRYPDGVVDDARLVAANAR 172

Query: 162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV----TSNGEKF-WGKKCVV-TAGAWVGK 215
            A ++GA +     V+++ +     +GGV  V       GE +    + VV  AG WV +
Sbjct: 173 DAAEHGAEILTYTRVESLRR-----EGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227

Query: 216 L 216
           +
Sbjct: 228 I 228

Length = 532

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
           ++DV++VGAG  GSSAA +LAK G   L+LE+   
Sbjct: 2  MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSE 37

Length = 396

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          +DV+VVGAG  G+SAAY+LA +G + LLLE+  F
Sbjct: 1  YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          DV+VVG G  G +AA   A+ G K LL+E+  +L
Sbjct: 1  DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWL 34

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 47.5 bits (114), Expect = 7e-06
 Identities = 14/28 (50%), Positives = 17/28 (60%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          DVIV+G G  G  AA   A+ G K LL+
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLI 28

Length = 391

>gnl|CDD|223522 COG0445, GidA, Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 5  GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
           +++DVIV+G G  G  AA   A+ G KTLLL
Sbjct: 2  PKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33

Length = 621

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVIVVGAG+ G  AA +LA  G++ LLL+Q
Sbjct: 6  DVIVVGAGLAGLVAAAELADAGKRVLLLDQ 35

Length = 549

>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

 Score = 45.8 bits (110), Expect = 3e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
            E++DVIVVG G  G  AA   A+ G KTLLL
Sbjct: 1  MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLL 33

Length = 618

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          +VGAG+ G  AAY LAKRG+  L+LE+ D +
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DV +VGAG  G +AAY LAK G K  + E+
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56

Length = 257

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG  G +AAY LAK G K  + E+
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61

Length = 262

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYH 65
          + +VG GI G +AAY+LAKRG +  + E  D L    +S           P E +YH
Sbjct: 2  IAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-----FGGLPIERFYH 53

Length = 434

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          KFDV+VVG G++G+S A  LA+ G +  LL  
Sbjct: 5  KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36

Length = 388

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DV+V+G+G+ G +AA + A+ G K  ++E+
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEK 30

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
            +DV+V+GAG+ G +AA  LA+ G K  +LE+
Sbjct: 2  PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEK 34

Length = 487

>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 7/45 (15%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
          +KFD IVVGAG+ GS AA  +A+ G   L++E       RG S G
Sbjct: 4  DKFDAIVVGAGVAGSVAALVMARAGLDVLVIE-------RGDSAG 41

Length = 429

>gnl|CDD|145231 pfam01946, Thi4, Thi4 family

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DV++VGAG  G +AAY LAK+G K  ++E+
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIER 48

This family includes a putative thiamine biosynthetic enzyme. Length = 229

>gnl|CDD|235416 PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          V V+GAG+ GS AA+QLAKRG    L E
Sbjct: 5  VNVIGAGLAGSEAAWQLAKRGVPVELYE 32

Length = 436

>gnl|CDD|224127 COG1206, Gid, NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          + V+GAG+ GS AA+Q+AKRG   +L E
Sbjct: 6  INVIGAGLAGSEAAWQIAKRGVPVILYE 33

Length = 439

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +FDV+V+G G  G  AA + A+ G K  LL 
Sbjct: 6  EFDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36

Length = 562

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           FD ++VGAG+ G+  A   A+ G++ L++E+
Sbjct: 1  MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEK 32

Length = 374

>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 5  GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          G   DVIVVGAG+ G  AA +LA  G++ L+L+Q
Sbjct: 3  GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQ 36

Length = 552

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +DVI+VG  I G   A  L+K+G+K L+LE+
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +  DV +VGAG  G + A  LA+ G    LLE+
Sbjct: 1  KMLDVAIVGAGPAGLALALALARAGLDVTLLER 33

Length = 387

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          E+FDVI++G G  G  AA   AK G++ LL+++
Sbjct: 2  ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDK 34

Length = 408

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +++DV+V+GAG  G  AA + A+ G K  L+E+
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK 35

Length = 454

>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF 39
          +D IV+G+GI G   A QLA +G K L+LE++
Sbjct: 1  YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY 32

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 493

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          M     ++D ++VG+G  GS  A +L+  G   L+LE
Sbjct: 1  MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE 37

Length = 542

>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          FDVI++G G+ G S A +LA+ G+K  ++  
Sbjct: 1  FDVIIIGGGLAGLSCALRLAEAGKKCAIIAA 31

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           D  ++G GI G++ A  LA+RG +  L E 
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEA 291

Length = 662

>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG  G +AAY LAK G K  +LE+
Sbjct: 23 DVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254

>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          DVI+VGAG+ GS+ AY LAK G++  ++E+
Sbjct: 45 DVIIVGAGVGGSALAYALAKDGRRVHVIER 74

Length = 514

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          KFDV+V+G G+ G +AA   A+ G++  L+
Sbjct: 2  KFDVLVIGGGLAGLTAALAAAEAGKRVALV 31

Length = 422

>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 17/29 (58%), Positives = 19/29 (65%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          FDVIV+G G  G  AA   A+ G KTLLL
Sbjct: 1  FDVIVIGGGHAGCEAALAAARMGAKTLLL 29

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137) [Protein synthesis, tRNA and rRNA base modification]. Length = 617

>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 7/43 (16%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
          FD I+VGAG+ GS AA  LA+ G + L++E       RG+S G
Sbjct: 6  FDAIIVGAGLAGSVAALVLAREGAQVLVIE-------RGNSAG 41

Length = 428

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          EK+DVIV+GAG  G  AA + AK G+K  L+E+
Sbjct: 2  EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK 34

Length = 460

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          V + GAG+ G +AAY+LA  G    L E  D L
Sbjct: 3  VAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35

Length = 485

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          D+I+VGAGI+G + AY  A+RG    ++E+
Sbjct: 2  DLIIVGAGILGLAHAYAAARRGLSVTVIER 31

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           FD I+VGAG+ G   A  LA+  ++ L++E+
Sbjct: 1  MFDYIIVGAGLSGIVLANILAQLNKRVLVVEK 32

This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	100.0
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	100.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	100.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	100.0
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	100.0
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	100.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	100.0
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	100.0
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	100.0
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	100.0
KOG2853	509	consensus Possible oxidoreductase [General functio	100.0
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	100.0
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	100.0
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	100.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	100.0
KOG2852	380	consensus Possible oxidoreductase [General functio	99.97
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.97
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.97
COG0579	429	Predicted dehydrogenase [General function predicti	99.97
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.97
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.94
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.94
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.93
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.93
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	99.93
PRK05257	494	malate:quinone oxidoreductase; Validated	99.92
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.92
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.84
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.79
PRK10157	428	putative oxidoreductase FixC; Provisional	99.74
PRK06185	407	hypothetical protein; Provisional	99.73
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.71
PRK06834	488	hypothetical protein; Provisional	99.67
COG2081	408	Predicted flavoproteins [General function predicti	99.66
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.66
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.65
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.65
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.65
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.65
PLN02697	529	lycopene epsilon cyclase	99.65
PRK06847	375	hypothetical protein; Provisional	99.64
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.63
PRK08244	493	hypothetical protein; Provisional	99.63
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.63
PRK07190	487	hypothetical protein; Provisional	99.63
PRK06184	502	hypothetical protein; Provisional	99.62
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.62
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.61
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.61
PRK10015	429	oxidoreductase; Provisional	99.59
PRK08013	400	oxidoreductase; Provisional	99.59
PRK08163	396	salicylate hydroxylase; Provisional	99.58
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.58
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.57
PRK09126	392	hypothetical protein; Provisional	99.56
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.56
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.56
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.56
PRK06126	545	hypothetical protein; Provisional	99.55
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.55
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.55
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.54
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.54
PRK07045	388	putative monooxygenase; Reviewed	99.54
PLN02463	447	lycopene beta cyclase	99.52
PRK08294	634	phenol 2-monooxygenase; Provisional	99.51
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.5
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.5
PRK06996	398	hypothetical protein; Provisional	99.5
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.49
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.49
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.49
PRK07588	391	hypothetical protein; Provisional	99.48
PRK05868	372	hypothetical protein; Validated	99.47
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.47
PRK11445	351	putative oxidoreductase; Provisional	99.47
PRK06753	373	hypothetical protein; Provisional	99.47
PRK07538	413	hypothetical protein; Provisional	99.46
PRK08274	466	tricarballylate dehydrogenase; Validated	99.46
PRK07233	434	hypothetical protein; Provisional	99.45
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.44
PRK07121	492	hypothetical protein; Validated	99.44
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.43
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.42
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.41
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.4
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.4
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.39
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.39
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PRK07804	541	L-aspartate oxidase; Provisional	99.36
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.36
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.36
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.36
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.35
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.34
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.34
PRK06175	433	L-aspartate oxidase; Provisional	99.34
PRK08275	554	putative oxidoreductase; Provisional	99.33
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.33
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.33
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.33
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.33
PLN02985	514	squalene monooxygenase	99.32
PRK06475	400	salicylate hydroxylase; Provisional	99.32
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.31
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.31
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.3
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.3
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.3
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.3
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.3
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.3
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.29
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.29
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PLN02612	567	phytoene desaturase	99.28
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.28
PLN02815	594	L-aspartate oxidase	99.28
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.28
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	99.27
PRK07395	553	L-aspartate oxidase; Provisional	99.27
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.27
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.27
PRK07236	386	hypothetical protein; Provisional	99.26
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.26
PRK07512	513	L-aspartate oxidase; Provisional	99.26
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.26
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.26
PRK07208	479	hypothetical protein; Provisional	99.25
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	99.25
PRK08401	466	L-aspartate oxidase; Provisional	99.25
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.25
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.25
PRK08071	510	L-aspartate oxidase; Provisional	99.25
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.24
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.23
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.23
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.23
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.22
PRK09077	536	L-aspartate oxidase; Provisional	99.22
PLN02576	496	protoporphyrinogen oxidase	99.21
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.2
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.2
PRK12839	572	hypothetical protein; Provisional	99.2
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.19
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.19
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.18
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.18
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.16
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.16
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.15
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.15
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.14
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.14
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.14
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.14
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.14
PRK06116	450	glutathione reductase; Validated	99.13
PLN02487	569	zeta-carotene desaturase	99.13
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.12
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.12
PTZ00367	567	squalene epoxidase; Provisional	99.12
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.11
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.1
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.1
PRK06370	463	mercuric reductase; Validated	99.1
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.09
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.09
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.08
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.08
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.08
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.08
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.07
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.07
PLN02661	357	Putative thiazole synthesis	99.07
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.07
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.06
PLN02268	435	probable polyamine oxidase	99.06
PLN02676	487	polyamine oxidase	99.06
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	99.06
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.04
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.03
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.02
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.01
PRK14694	468	putative mercuric reductase; Provisional	99.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.0
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.0
PLN02568	539	polyamine oxidase	99.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	99.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.0
PLN02507	499	glutathione reductase	98.99
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.99
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.98
PRK14727	479	putative mercuric reductase; Provisional	98.98
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.98
PTZ00058	561	glutathione reductase; Provisional	98.97
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.95
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.95
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.95
PLN02546	558	glutathione reductase	98.94
PRK10262	321	thioredoxin reductase; Provisional	98.93
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.92
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.91
PRK13748	561	putative mercuric reductase; Provisional	98.9
PTZ00052	499	thioredoxin reductase; Provisional	98.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.87
TIGR02053	463	MerA mercuric reductase. This model represents the	98.87
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.87
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.87
PRK09897	534	hypothetical protein; Provisional	98.87
PRK02106	560	choline dehydrogenase; Validated	98.85
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.84
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.82
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.81
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.81
PLN02529	738	lysine-specific histone demethylase 1	98.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.8
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.79
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.77
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.77
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.77
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.75
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.73
COG3573	552	Predicted oxidoreductase [General function predict	98.73
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	98.73
PLN03000	881	amine oxidase	98.7
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.67
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.66
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.66
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.64
PRK07846	451	mycothione reductase; Reviewed	98.63
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.61
COG3349	485	Uncharacterized conserved protein [Function unknow	98.58
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.57
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.54
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.53
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.53
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.52
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.52
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.5
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.5
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.48
PLN02785	587	Protein HOTHEAD	98.47
PLN02976	1713	amine oxidase	98.46
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.44
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.44
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.4
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.39
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.39
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.38
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.37
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.36
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.34
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.32
PLN02507	499	glutathione reductase	98.31
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.3
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.3
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.28
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	98.28
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.26
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.25
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.24
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.23
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.23
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.23
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.23
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.23
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.2
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.17
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.17
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.14
PRK06370	463	mercuric reductase; Validated	98.14
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.14
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.13
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.12
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.12
PTZ00058	561	glutathione reductase; Provisional	98.11
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.1
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.1
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.06
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.04
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.04
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.03
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.02
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.02
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.01
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.99
PRK12831	464	putative oxidoreductase; Provisional	97.99
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.95
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.94
PLN02546	558	glutathione reductase	97.94
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.92
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.9
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.86
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.86
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	97.85
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.85
PLN02852	491	ferredoxin-NADP+ reductase	97.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.79
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.78
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.76
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.75
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.74
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.7
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.66
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.64
PTZ00188	506	adrenodoxin reductase; Provisional	97.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.63
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.62
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.61
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	97.58
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.53
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	97.53
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.49
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.48
PRK10262	321	thioredoxin reductase; Provisional	97.48
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.47
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.44
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.44
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.4
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.36
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.29
PRK13984	604	putative oxidoreductase; Provisional	97.28
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.24
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.21
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.21
PRK12831	464	putative oxidoreductase; Provisional	97.05
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.04
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.03
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.97
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	96.91
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.71
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.57
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.5
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.46
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.33
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.32
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.28
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.23
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.23
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.2
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.14
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.08
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	95.82
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.81
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.73
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.64
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.63
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.63
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.62
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.6
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.6
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.45
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.38
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.38
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.26
PRK07846	451	mycothione reductase; Reviewed	95.24
TIGR02053	463	MerA mercuric reductase. This model represents the	95.18
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	95.16
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.05
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.02
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.94
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.94
KOG2755	334	consensus Oxidoreductase [General function predict	94.93
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.92
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.91
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.8
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.78
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.77
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.76
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.74
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.71
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.69
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.67
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.65
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.64
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.55
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.54
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.54
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.49
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.48
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.43
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.36
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.33
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.32
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.2
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.2
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.16
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	94.03
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.01
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	93.99
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.94
PRK04148	134	hypothetical protein; Provisional	93.94
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.93
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.88
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.84
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.83
PRK06116	450	glutathione reductase; Validated	93.82
PTZ00052	499	thioredoxin reductase; Provisional	93.81
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.69
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.69
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.67
PRK14694	468	putative mercuric reductase; Provisional	93.66
PRK13748	561	putative mercuric reductase; Provisional	93.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.65
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.64
PRK14727	479	putative mercuric reductase; Provisional	93.63
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.62
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	93.52
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.52
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	93.48
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.39
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.38
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	93.33
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.31
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.29
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.26
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.2
PRK07417	279	arogenate dehydrogenase; Reviewed	93.17
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.16
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.16
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.14
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.12
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.05
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.05
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.01
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.99
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.86
PRK08328	231	hypothetical protein; Provisional	92.76
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.72
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.6
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.58
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.57
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.55
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.52
PRK06223	307	malate dehydrogenase; Reviewed	92.41
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.39
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.29
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.23
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.19
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.18
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	92.12
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.11
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.08
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.06
PRK08223	287	hypothetical protein; Validated	92.03
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.96
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.92
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	91.92
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.84
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.83
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.83
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.78
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.76
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	91.73
PTZ00117	319	malate dehydrogenase; Provisional	91.68
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	91.66
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.53
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.5
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.5
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.41
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.2
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.17
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	91.17
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.0
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	90.97
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.94
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	90.93
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.91
PRK12548	289	shikimate 5-dehydrogenase; Provisional	90.89
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.75
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.73
PRK09496	453	trkA potassium transporter peripheral membrane com	90.71
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	90.69
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.65
PRK07774	250	short chain dehydrogenase; Provisional	90.63
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	90.58
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.53
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.49
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.47
PLN02602	350	lactate dehydrogenase	90.45

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=100.00  E-value=1e-48  Score=368.18  Aligned_cols=375  Identities=44%  Similarity=0.770  Sum_probs=300.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      +||+|||||++|+++|++|+++|++|+|||+....++.+++...++.++..+....+..+..++.++|+++.++.+.+++
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~   80 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH   80 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence            59999999999999999999999999999998765444556566666666666666778899999999999988887776


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  167 (413)
                      ...+.+.+...+.+.+.+..+.++..+.+.+.++.+++.+.+|. +..+....+++.+.+++++|..+++.|.+.+++.|
T Consensus        81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~-l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g  159 (380)
T TIGR01377        81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPN-IRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHG  159 (380)
T ss_pred             eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCC-CcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcC
Confidence            77788877654445667777778888999999999999999998 55455566889999999999999999999999999


Q ss_pred             CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCcc
Q 015088          168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADY  247 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~  247 (413)
                      ++++++++|+++..  +  ++.+.|.+.+++ +.+|.||+|+|+|+..+.+.+ +..+|+.+.++++..++.+......+
T Consensus       160 ~~~~~~~~V~~i~~--~--~~~~~v~~~~~~-i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  233 (380)
T TIGR01377       160 ATVRDGTKVVEIEP--T--ELLVTVKTTKGS-YQANKLVVTAGAWTSKLLSPL-GIEIPLQPLRINVCYWREKEPGSYGV  233 (380)
T ss_pred             CEEECCCeEEEEEe--c--CCeEEEEeCCCE-EEeCEEEEecCcchHHHhhhc-ccCCCceEEEEEEEEEecCCccccCc
Confidence            99999999999988  6  456778887774 999999999999999888877 88899999999988887543221111


Q ss_pred             ccCCCCCeEEEcC-CCceEecCCCCCCCcEEEecCCCCCCCCCCCCC---CCchhHHHHHHHHHhhcCCCCCCCCCeeec
Q 015088          248 AVGGDFPSFASYG-DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPW---GPGLLLDSLKEWIQGRFAGRVDSNGPVATQ  323 (413)
Q Consensus       248 ~~~~~~~~~~~~~-~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  323 (413)
                      .  ..+|.+...+ ...+|.+|..+..+++.++...+...+++...+   ......+.+.+.+.+++|.+.+  .....|
T Consensus       234 ~--~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~--~~~~~~  309 (380)
T TIGR01377       234 S--QAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNG--EPKKGE  309 (380)
T ss_pred             c--CCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCC--Ccceee
Confidence            1  1367665443 235899998655565555443322223322211   1122688899999999999984  346789


Q ss_pred             eeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccCCC
Q 015088          324 LCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPK  396 (413)
Q Consensus       324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~  396 (413)
                      .|++++|||+.|+||++|..  +|+|+++||+|+|++++|.+|+++|++|+++++ ..+++.|+|+||.++++
T Consensus       310 ~~~~~~t~D~~piIg~~p~~--~~l~va~G~~g~G~~~~p~~g~~la~li~~~~~-~~~~~~f~~~Rf~~~~~  379 (380)
T TIGR01377       310 VCMYTNTPDEHFVIDLHPKY--DNVVIGAGFSGHGFKLAPVVGKILAELAMKLKP-SYDLAIFSLNRFALKKK  379 (380)
T ss_pred             EEEeccCCCCCeeeecCCCC--CCEEEEecCCccceeccHHHHHHHHHHHhcCCC-CCCccccChhhcccCCC
Confidence            99999999999999999988  999999999999999999999999999996665 67899999999998875

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=100.00  E-value=8.2e-49  Score=333.82  Aligned_cols=387  Identities=38%  Similarity=0.642  Sum_probs=336.0

Q ss_pred             CCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088            3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      .+....||+|||||+-|+++|++|+++|.+++|+|+-+.+...++|++.+++++..+.+..|..+..++.+.|.++..+.
T Consensus         3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~   82 (399)
T KOG2820|consen    3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEES   82 (399)
T ss_pred             ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhh
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      +..+....+.+.....+...+......++..++..+.+..+++++++|..+.+++.+.++....+|++++.+-+++++..
T Consensus        83 g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~  162 (399)
T KOG2820|consen   83 GVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDK  162 (399)
T ss_pred             ceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHH
Confidence            88776677777776666566777778888888888999999999999955888999999999999999999999999999


Q ss_pred             HHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE  241 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~  241 (413)
                      +...|+.++.+.+|+.+..  .+ .+..+.|+|.+|..+.|+.+|+|+|+|.+++++..+++.+|+.+.+-...+++...
T Consensus       163 ~~~~G~i~~dg~~v~~~~~--~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~i~ltvcywk~~~  240 (399)
T KOG2820|consen  163 ARELGVIFRDGEKVKFIKF--VDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAPIQLTVCYWKTKK  240 (399)
T ss_pred             HHHcCeEEecCcceeeEee--ccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccceeEeehhhheeec
Confidence            9999999999999999885  32 24788999999998999999999999999999975689999999999999888665


Q ss_pred             CCCCccccCCCCCeEEEcCCC--ceEecCCCCCCCcEEEecCCC---CCCCCCCCCCCCch-hHHHHHHHHHhhcCCCCC
Q 015088          242 GNEADYAVGGDFPSFASYGDP--YIYGTPSLEYPGLIKIALHGG---YPCDPDRRPWGPGL-LLDSLKEWIQGRFAGRVD  315 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~--~~y~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~l~~~~~~~~p~~~~  315 (413)
                      +.+..+..+..+++|.+....  ..|.+|..+..|.+.+.++.+   ...+|+...+.+.. .++.....++++.|.+.+
T Consensus       241 ~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~  320 (399)
T KOG2820|consen  241 NMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDD  320 (399)
T ss_pred             CCceeecCCCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccC
Confidence            544335555668888777666  789999999999999988766   45566666666654 566677777888899987


Q ss_pred             CCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCC--cccccccccccccc
Q 015088          316 SNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQ--GVELQHFRISRFKE  393 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~--~~~~~~~~~~R~~~  393 (413)
                      . .++...-|++..|||...+|+.+|+.  .|+++++|.+||||.++|.+|+++|++++ +..+  ..+...|+.+||..
T Consensus       321 ~-~p~~t~~C~YT~TpD~~FviD~~P~~--~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~-~~~~e~~~d~~~f~~~rf~~  396 (399)
T KOG2820|consen  321 R-SPINTKMCMYTDTPDANFVIDKHPQY--DNVFVGGGGSGHGFKFAPNIGKYLAEMAM-GDLSEEWVDAWRFREDRFES  396 (399)
T ss_pred             C-CcceeeEEEeeCCCCcCeeeecCCCc--ccEEEecCCCCcceeecchHHHHHHHHhh-hcccccceehhhhhhhhccc
Confidence            4 78889999999999999999999999  89999999999999999999999999999 5553  66788888888876


Q ss_pred             CC
Q 015088          394 NP  395 (413)
Q Consensus       394 ~~  395 (413)
                      .+
T Consensus       397 ~~  398 (399)
T KOG2820|consen  397 EA  398 (399)
T ss_pred             cc
Confidence            54

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=100.00  E-value=9.1e-46  Score=347.69  Aligned_cols=368  Identities=36%  Similarity=0.624  Sum_probs=288.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ++||+|||||++|+++|++|+++|++|+|||++...++.+++++..+.++..+. ...+..+..++.++|.++.+..+.+
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~   82 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP   82 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999999876545566666666654433 3456788899999999999888877


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ++...+.+.+.....+.+.+..+.+++.+++.+.++.+++.+++|. +..+....+++.+.+++++|.+++..+.+.+.+
T Consensus        83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~-l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~  161 (376)
T PRK11259         83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQ-FRLPDGYIALFEPDGGFLRPELAIKAHLRLARE  161 (376)
T ss_pred             cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-CcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence            6677788877655444556667777888999999999999999998 654556678889999999999999999999999


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA  245 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~  245 (413)
                      .|++++++++|+++..  +  ++.+.|++++|. +++|+||+|+|+|+..+++++   .+|+.+.+++++.++.++.   
T Consensus       162 ~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~a~~vV~A~G~~~~~l~~~~---~~~i~~~~~~~~~~~~~~~---  230 (376)
T PRK11259        162 AGAELLFNEPVTAIEA--D--GDGVTVTTADGT-YEAKKLVVSAGAWVKDLLPPL---ELPLTPVRQVLAWFQADGR---  230 (376)
T ss_pred             CCCEEECCCEEEEEEe--e--CCeEEEEeCCCE-EEeeEEEEecCcchhhhcccc---cCCceEEEEEEEEEecCCc---
Confidence            9999999999999988  6  456788888885 999999999999999887653   5789999999988874321   


Q ss_pred             ccccCCCCCeEEE--cCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCC--CCchhHHHHHHHHHhhcCCCCCCCCCe
Q 015088          246 DYAVGGDFPSFAS--YGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPW--GPGLLLDSLKEWIQGRFAGRVDSNGPV  320 (413)
Q Consensus       246 ~~~~~~~~~~~~~--~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~l~~~~~~~~p~~~~~~~~~  320 (413)
                       +.....+|.+..  .++..+|.+|..+..+++.+++..+. ..++...+.  ......+.+.+.+.++||.+.+   +.
T Consensus       231 -~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~---~~  306 (376)
T PRK11259        231 -YSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP---CL  306 (376)
T ss_pred             -cCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc---cc
Confidence             111112565432  22334788888664444444433211 112221111  1123688999999999998773   67


Q ss_pred             eeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088          321 ATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       321 ~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~  393 (413)
                      ..|+|+|++|||+.|+||++|..  +|+|+++||+|+|++++|.+|+.+|++|.++++ ..+++.|+|+||..
T Consensus       307 ~~~~g~~~~t~D~~P~ig~~~~~--~gl~~~~G~~g~G~~~ap~~g~~la~li~~~~~-~~~~~~~~~~Rf~~  376 (376)
T PRK11259        307 RGAACTYTNTPDEHFIIDTLPGH--PNVLVASGCSGHGFKFASVLGEILADLAQDGTS-DFDLSPFSLSRFAA  376 (376)
T ss_pred             cceEEecccCCCCCceeecCCCC--CCEEEEecccchhhhccHHHHHHHHHHHhcCCC-CCCcCccCcccccC
Confidence            78999999999999999999987  999999999999999999999999999996665 67899999999963

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=100.00  E-value=4.8e-45  Score=345.62  Aligned_cols=368  Identities=20%  Similarity=0.225  Sum_probs=284.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~-~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      ..++||+|||||++|+++|++|+++ |. +|+|||++..+  .++|+.++++++..+..+.+..+...+.+.|+++.++.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~--~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~  105 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLG--GGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDL  105 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccccc--CcccccccceeeecccCccccHHHHHHHHHHHHHHHHh
Confidence            3578999999999999999999995 95 99999998654  45677778888776655556678888999999999988


Q ss_pred             CCee-EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCC-----CCeEEEEecCCceeChHH
Q 015088           83 GYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIP-----ENWVGVATELGGVIKPTK  154 (413)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  154 (413)
                      +.++ +...+.+.+...+  .+.+.+..+..+..|++.+.++.+++.+++|. +..+     ....+++.+.++.++|..
T Consensus       106 ~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~~~~~~~~~~~ga~~~~~~g~v~p~~  184 (407)
T TIGR01373       106 NYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPI-LDFSPDARFPVVGGLLQRRGGTARHDA  184 (407)
T ss_pred             CCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCC-CccccccccceeEEEEcCCCCcCCHHH
Confidence            8776 5567887776543  23345666667778999999999999999998 5533     234678888899999999


Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV  234 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~  234 (413)
                      +...|.+.+.+.|++++++++|++++.  .+++..+.|++.+|. +.++.||+|+|+|+..+.+.+ ++.+|+.+.++++
T Consensus       185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~--~~~~~~~~v~t~~g~-i~a~~vVvaagg~~~~l~~~~-g~~~~~~~~~~~~  260 (407)
T TIGR01373       185 VAWGYARGADRRGVDIIQNCEVTGFIR--RDGGRVIGVETTRGF-IGAKKVGVAVAGHSSVVAAMA-GFRLPIESHPLQA  260 (407)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEeCCce-EECCEEEECCChhhHHHHHHc-CCCCCcCcccceE
Confidence            999999999999999999999999976  533345668888886 999999999999998877765 8888999999887


Q ss_pred             EEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CCCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 015088          235 CYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR  313 (413)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~  313 (413)
                      +...  + .. ..     .+.+....+..+|++|..+  |.++++... ......  .. ......+.+.+.+.+++|.+
T Consensus       261 ~~~~--~-~~-~~-----~~~~~~~~~~~~y~~p~~~--g~~~ig~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~P~l  326 (407)
T TIGR01373       261 LVSE--P-LK-PI-----IDTVVMSNAVHFYVSQSDK--GELVIGGGIDGYNSYA--QR-GNLPTLEHVLAAILEMFPIL  326 (407)
T ss_pred             EEec--C-CC-CC-----cCCeEEeCCCceEEEEcCC--ceEEEecCCCCCCccC--cC-CCHHHHHHHHHHHHHhCCCc
Confidence            6443  1 11 11     2222222334478888754  434444321 111100  00 11226788999999999999


Q ss_pred             CCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088          314 VDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~  393 (413)
                      .+. .+.+.|+|+|++|+|+.|+||++|.   +|+|+++|++|+|+++||++|+++|++|.++++ ..+++.|+|+||..
T Consensus       327 ~~~-~~~~~w~G~~~~t~D~~PiIg~~~~---~gl~~a~G~~g~G~~~ap~~G~~la~li~~~~~-~~~~~~f~~~Rf~~  401 (407)
T TIGR01373       327 SRV-RMLRSWGGIVDVTPDGSPIIGKTPL---PNLYLNCGWGTGGFKATPASGTVFAHTLARGEP-HDINAPFTLDRFHS  401 (407)
T ss_pred             CCC-CeEEEeccccccCCCCCceeCCCCC---CCeEEEeccCCcchhhchHHHHHHHHHHhCCCC-CCCCcccCHhHhcc
Confidence            864 6778999999999999999999973   899999999999999999999999999996665 56789999999987


Q ss_pred             CCCCC
Q 015088          394 NPKGN  398 (413)
Q Consensus       394 ~~~~~  398 (413)
                      ++..+
T Consensus       402 ~~~~~  406 (407)
T TIGR01373       402 GRLID  406 (407)
T ss_pred             CCccc
Confidence            66554

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=100.00  E-value=4.5e-43  Score=333.61  Aligned_cols=358  Identities=16%  Similarity=0.208  Sum_probs=266.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC--------------------------
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED--------------------------   62 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~--------------------------   62 (413)
                      ||+|||||++|+++|++|+++|++|+|+|+....+ .++|..+++.++..+..+                          
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~-~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPA-LETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPD   80 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchh-hhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCC
Confidence            79999999999999999999999999999985432 456666666655543211                          


Q ss_pred             --------------------------ChHHHHHHHHHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhC
Q 015088           63 --------------------------YYHPMVLESCLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKN  113 (413)
Q Consensus        63 --------------------------~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~  113 (413)
                                                .+..+...+.+.|.++.++.++++. ...+.+.+...+  .+.+.+..+.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~  160 (416)
T PRK00711         81 GDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEA  160 (416)
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHHc
Confidence                                      1234455678889999888888764 456777665443  23456666777889


Q ss_pred             CCCccccCHHHHHHHcCCcccC--CCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEE
Q 015088          114 SVPHQVLDCRQVLEKYSGRIEI--PENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT  191 (413)
Q Consensus       114 g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~  191 (413)
                      +++.++++.+++.+.+|. +..  +....+++.+.++.++|..++..|.+.+++.|++|+++++|++++.  ++ +..+.
T Consensus       161 g~~~~~l~~~e~~~~~P~-l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~  236 (416)
T PRK00711        161 GVPYELLDRDELAAVEPA-LAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV--EG-GRITG  236 (416)
T ss_pred             CCCceecCHHHHHHhCCC-ccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--cC-CEEEE
Confidence            999999999999999987 431  3445678899999999999999999999999999999999999987  62 23345


Q ss_pred             EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCC
Q 015088          192 VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLE  271 (413)
Q Consensus       192 v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~  271 (413)
                      |++++++ +++|+||+|+|.|+..+++.+ +..+|+.|.+++++.+..+...        ..|..........+..+..+
T Consensus       237 v~t~~~~-~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p~rg~~~~~~~~~~~--------~~p~~~~~~~~~~~~~~~~~  306 (416)
T PRK00711        237 VQTGGGV-ITADAYVVALGSYSTALLKPL-GVDIPVYPLKGYSLTVPITDED--------RAPVSTVLDETYKIAITRFD  306 (416)
T ss_pred             EEeCCcE-EeCCEEEECCCcchHHHHHHh-CCCcccCCccceEEEEecCCCC--------CCCceeEEecccCEEEeecC
Confidence            7777664 999999999999999988877 8888999999987655432211        12222111111122333332


Q ss_pred             CCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEE
Q 015088          272 YPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVA  351 (413)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~  351 (413)
                       +.++.++.......+..   .+ ....+.+.+.+.++||.+.+. .+...|+|+|++|+|+.|+||++|.   +|+|++
T Consensus       307 -~~~~iG~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~t~D~~PiIG~~~~---~gl~~a  377 (416)
T PRK00711        307 -DRIRVGGMAEIVGFDLR---LD-PARRETLEMVVRDLFPGGGDL-SQATFWTGLRPMTPDGTPIVGATRY---KNLWLN  377 (416)
T ss_pred             -CceEEEEEEEecCCCCC---CC-HHHHHHHHHHHHHHCCCcccc-cccceeeccCCCCCCCCCEeCCcCC---CCEEEe
Confidence             23333332111111111   11 226778888999999998865 6778999999999999999999873   899999


Q ss_pred             eCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccc
Q 015088          352 GGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF  391 (413)
Q Consensus       352 ~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~  391 (413)
                      +||+|+|+++||++|+++|++|+++.+ ..+++.|+|+||
T Consensus       378 ~G~~g~G~~~ap~~g~~la~li~g~~~-~~~~~~f~~~Rf  416 (416)
T PRK00711        378 TGHGTLGWTMACGSGQLLADLISGRKP-AIDADDLSVARY  416 (416)
T ss_pred             cCCchhhhhhhhhHHHHHHHHHcCCCC-CCCccccCccCC
Confidence            999999999999999999999995554 678999999998

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=100.00  E-value=9.4e-40  Score=309.79  Aligned_cols=348  Identities=14%  Similarity=0.136  Sum_probs=253.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC--------------------------
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--------------------------   61 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~--------------------------   61 (413)
                      +||+|||||++|+++|++|+++|++|+|||++...+ .++|..+++.+......                          
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~-~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA-METSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNP   80 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC-cCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecC
Confidence            499999999999999999999999999999987543 45666666666432100                          


Q ss_pred             ------------------------CChHHHHHHHHHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhCC
Q 015088           62 ------------------------DYYHPMVLESCLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKNS  114 (413)
Q Consensus        62 ------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g  114 (413)
                                              .....+..++.+.|.++.++.++++. ...|.+.+....  .+.+.+..+..+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g  160 (410)
T PRK12409         81 KPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEGG  160 (410)
T ss_pred             CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhcC
Confidence                                    01235666778889999988888774 457777665432  223456666777788


Q ss_pred             CCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc
Q 015088          115 VPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT  194 (413)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~  194 (413)
                      ++.+.++++++.+++|. +. .....+++.+.++++++..++..|.+.+++.|++++++++|+++..  +  ++.+.+.+
T Consensus       161 ~~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~--~--~~~~~v~~  234 (410)
T PRK12409        161 LERRAVTPEEMRAIEPT-LT-GEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKT--D--GGGVVLTV  234 (410)
T ss_pred             CCeEEcCHHHHHHhCCC-Cc-cccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEE
Confidence            88899999999999987 44 3345688889999999999999999999999999999999999987  6  34555543


Q ss_pred             CCC-----cEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEE-EcCCCceEecC
Q 015088          195 SNG-----EKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFA-SYGDPYIYGTP  268 (413)
Q Consensus       195 ~~g-----~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~p  268 (413)
                      .++     .+++||+||+|+|+|+..+.+.+ +..+++.+.+++++.+++++....     ...|.+. ...+.+++..+
T Consensus       235 ~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p~~g~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~  308 (410)
T PRK12409        235 QPSAEHPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYPVKGYSITVNLDDEASR-----AAAPWVSLLDDSAKIVTSR  308 (410)
T ss_pred             EcCCCCccceEecCEEEECCCcChHHHHHHh-CCCCccccCCceEEEeecCCcccc-----ccCCceeeeecCCcEEEEe
Confidence            322     25999999999999999998876 788899999999887764332110     1134322 12222222222


Q ss_pred             CCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCE
Q 015088          269 SLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDV  348 (413)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~  348 (413)
                      . ..+.++.+++......+++   .+. +..+.+.+++.+++|.+.+. .+ ..|+|+|++|+|+.|+||+.+ .  +|+
T Consensus       309 ~-~~~~~~igg~~~~~~~~~~---~~~-~~~~~l~~~~~~~~P~l~~~-~~-~~w~G~r~~t~D~~PiiG~~~-~--~~l  378 (410)
T PRK12409        309 L-GADRFRVAGTAEFNGYNRD---IRA-DRIRPLVDWVRRNFPDVSTR-RV-VPWAGLRPMMPNMMPRVGRGR-R--PGV  378 (410)
T ss_pred             c-CCCcEEEEEEEEecCCCCC---CCH-HHHHHHHHHHHHhCCCCCcc-cc-ceecccCCCCCCCCCeeCCCC-C--CCE
Confidence            2 1123334443211111111   111 26788889999999999864 33 479999999999999999976 3  899


Q ss_pred             EEEeCCCCCCCccchHHHHHHHHHHhcCCC
Q 015088          349 VVAGGFSGHGFKMAPAVGRILADLVLSGEA  378 (413)
Q Consensus       349 ~~~~G~~~~G~~~a~~~a~~la~~i~~g~~  378 (413)
                      |+++|++++|+++||++|+++|++|+++.+
T Consensus       379 ~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~  408 (410)
T PRK12409        379 FYNTGHGHLGWTLSAATADLVAQVVAQKLP  408 (410)
T ss_pred             EEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence            999999999999999999999999985443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=100.00  E-value=7.3e-41  Score=312.76  Aligned_cols=342  Identities=31%  Similarity=0.472  Sum_probs=267.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc---cCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT---YPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ||+|||||++|+++|++|+++|++|+|||++...  .++|....+.++..   .....+..+...+.+.|+++..+.+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~--~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIG--SGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIP   78 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTT--SSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeecccc--ccccccccccccccccccccccccchhhhhccchhhhhhhcCcc
Confidence            7999999999999999999999999999999544  46677778888776   555577889999999999999998877


Q ss_pred             eEE-eeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           86 VYF-KAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        86 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ..+ ..+.+.+....  .+.+++..+.++..+.+.+.++.+++.+.+|. +. +....+++.+.+++++|..+++.|.+.
T Consensus        79 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~~~~~~~~~g~i~~~~l~~~l~~~  156 (358)
T PF01266_consen   79 VGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPF-LN-PRIEGGVFFPEGGVIDPRRLIQALAAE  156 (358)
T ss_dssp             CEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTT-SS-TTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcc-cc-cchhhhhcccccccccccchhhhhHHH
Confidence            644 66777776432  23456777788888999999999999999997 55 566778999999999999999999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE  241 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~  241 (413)
                      +++.|++++++++|++|..  +  ++.+. |++.+|+ +.||+||+|+|.|+..+++.+ +..+++.+.+++++.++...
T Consensus       157 ~~~~Gv~i~~~~~V~~i~~--~--~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~  230 (358)
T PF01266_consen  157 AQRAGVEIRTGTEVTSIDV--D--GGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLL-GLDLPLRPVRGQVLVLEPPE  230 (358)
T ss_dssp             HHHTT-EEEESEEEEEEEE--E--TTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTT-TTSSTEEEEEEEEEEEEGCC
T ss_pred             HHHhhhhccccccccchhh--c--ccccccccccccc-cccceeEecccccceeeeecc-cccccccccceEEEEEccCC
Confidence            9999999999999999998  7  45666 9999998 999999999999999988887 88789999999999888433


Q ss_pred             CCCCccccCCCCCeE-E---EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCC-c-h---hHHHHHHHHHhhcCC
Q 015088          242 GNEADYAVGGDFPSF-A---SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGP-G-L---LLDSLKEWIQGRFAG  312 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~-~---~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~---~~~~l~~~~~~~~p~  312 (413)
                      ...       ..+.. .   .......|+.|..  ++++.+.........+....... + +   ..+.+++.+.+++|.
T Consensus       231 ~~~-------~~~~~~~~~~~~~~~~~~~~p~~--g~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~  301 (358)
T PF01266_consen  231 SPL-------APAILFPPVIFGPSDGVYIRPRP--GGVLIGTADGNYDPGPSPEDSSGEDPDVDEEIDELLERLARLLPG  301 (358)
T ss_dssp             SGS-------SSEEEEEEECESSCTEEEEEEET--TEEEEEESECEEEESSSHHHHSHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred             ccc-------ccccccccccccccccceecccc--cccccccccccccccccccccccccccccHHHHHhHHHHHHHHHH
Confidence            211       01111 1   1122456777776  23333322211111121111000 0 0   146899999999999


Q ss_pred             CCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088          313 RVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       313 ~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~  372 (413)
                      +.+. .+...|+|+|++|+|+.|+||++|..  +|+|+++|++|+|++++|++|+++|++
T Consensus       302 l~~~-~v~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~g~~~~G~~~a~~~a~~~a~~  358 (358)
T PF01266_consen  302 LGDA-EVVRSWAGIRPFTPDGRPIIGELPGS--PNLYLAGGHGGHGFTLAPGLAELLADL  358 (358)
T ss_dssp             GGGS-EEEEEEEEEEEEETTSECEEEEESSE--EEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred             hhhc-cccccccceeeeccCCCeeeeecCCC--CCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            9864 66779999999999999999999988  999999999999999999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=100.00  E-value=4.4e-40  Score=327.79  Aligned_cols=359  Identities=18%  Similarity=0.177  Sum_probs=257.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC--ChHHHHH----HHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED--YYHPMVL----ESCLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~--~~~~l~~----~~~~~~~~~~~   80 (413)
                      .+||+|||||++|+++|++|+++|++|+|||+....+ .++|..+.|.+.......  ...++..    .+.++|.++. 
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~-  337 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA-QGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP-  337 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc-ccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-
Confidence            3699999999999999999999999999999986443 356666666666544322  2233333    4667788776 


Q ss_pred             HhCCee-EEeeceeeeCCCCh--hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088           81 EIGYKV-YFKAHQFDMGPSEN--KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      +.+.++ +..+|.+.+...+.  +.+.+..+.... +...+.++.+++.+..+.    +....+++.+.+++++|..++.
T Consensus       338 ~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~----~~~~~g~~~p~~G~v~p~~l~~  412 (662)
T PRK01747        338 AAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGL----PVPCGGIFYPQGGWLCPAELCR  412 (662)
T ss_pred             hcCCCCCCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCC----CCCCCcEEeCCCCeeCHHHHHH
Confidence            445544 33456666554322  122222222211 223578888888887664    3456788999999999999999


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEE
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYW  237 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~  237 (413)
                      .|.+.+++ |++++++++|+++..  .  ++.|.|.+++|..+++|.||+|+|.|+..+...   ..+|+.++||+++.+
T Consensus       413 aL~~~a~~-Gv~i~~~~~V~~i~~--~--~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~---~~lpl~p~RGqv~~~  484 (662)
T PRK01747        413 ALLALAGQ-QLTIHFGHEVARLER--E--DDGWQLDFAGGTLASAPVVVLANGHDAARFAQT---AHLPLYSVRGQVSHL  484 (662)
T ss_pred             HHHHhccc-CcEEEeCCEeeEEEE--e--CCEEEEEECCCcEEECCEEEECCCCCccccccc---cCCCcccccceEEee
Confidence            99999999 999999999999987  6  456788888887678999999999999877653   257899999999877


Q ss_pred             EecCCCCCccccCCCCCeEEEcCCCceEecC-CCCCCCcEEEec-CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCC--
Q 015088          238 RIKEGNEADYAVGGDFPSFASYGDPYIYGTP-SLEYPGLIKIAL-HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR--  313 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~--  313 (413)
                      +.+....    .   .+.....   ..|++| ..+  |.+.+|. ....+.+   ..... +..+.+.+.+.+++|.+  
T Consensus       485 ~~~~~~~----~---~~~~~~~---~~Y~~p~~~~--g~~~iGat~~~~~~~---~~~~~-~~~~~~~~~l~~~~P~l~~  548 (662)
T PRK01747        485 PTTPALS----A---LKQVLCY---DGYLTPQPAN--GTHCIGASYDRDDTD---TAFRE-ADHQENLERLAECLPQALW  548 (662)
T ss_pred             cCCcccc----c---cCceeEC---CceeCCCCCC--CceEeCcccCCCCCC---CCCCH-HHHHHHHHHHHHhCCCchh
Confidence            6332110    0   1112222   258888 443  5444443 2211111   11111 25667888899999976  


Q ss_pred             ---CCCCCCeeeceeeeeecCCCCeEecC----------------------CCCCCCCCEEEEeCCCCCCCccchHHHHH
Q 015088          314 ---VDSNGPVATQLCMYSITPDEDFVIDF----------------------LGGEFGEDVVVAGGFSGHGFKMAPAVGRI  368 (413)
Q Consensus       314 ---~~~~~~~~~~~g~~~~t~d~~p~ig~----------------------~~~~~~~~~~~~~G~~~~G~~~a~~~a~~  368 (413)
                         .+. .+...|+|+|++|+|+.|+||+                      +|..  +|+|+++|+||+|+++||++|++
T Consensus       549 ~~~~~~-~~~~~~aG~R~~tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~--~gl~v~~G~gs~Gl~~ap~~a~~  625 (662)
T PRK01747        549 AKEVDV-SALQGRVGFRCASRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRL--PGLYVAGALGSRGLCSAPLGAEL  625 (662)
T ss_pred             hhccCc-cccCceEEEeccCCCcccccCCCCCHHHHHHHHHhhhhccccccCCCC--CCeEEEecccccHHHHHHHHHHH
Confidence               333 5678999999999999999999                      4545  89999999999999999999999


Q ss_pred             HHHHHhcCCCCccc---cccccccccccCCCCCCc
Q 015088          369 LADLVLSGEAQGVE---LQHFRISRFKENPKGNVK  400 (413)
Q Consensus       369 la~~i~~g~~~~~~---~~~~~~~R~~~~~~~~~~  400 (413)
                      ||++|+ |++.+++   ++.|+|+||...++.+.|
T Consensus       626 lA~li~-g~~~p~~~~~~~~~~p~Rf~~r~l~~~~  659 (662)
T PRK01747        626 LASQIE-GEPLPLERDLLAALHPNRFWVRKLLKGK  659 (662)
T ss_pred             HHHHHh-CCCCCCCHHHHHhhChHHHHHHHHhcCC
Confidence            999998 6654443   688999999988776554

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=100.00  E-value=1.5e-39  Score=311.28  Aligned_cols=350  Identities=17%  Similarity=0.159  Sum_probs=246.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecc----------cCCCChHHHHHHH-
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRAT----------YPEDYYHPMVLES-   71 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~----------~~~~~~~~l~~~~-   71 (413)
                      +.++||+|||||++|+++|++|+++  |.+|+|||++..+  .++|..++|.+...          +.......+...+ 
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g--~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~   99 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG--AGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASE   99 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc--cccccccCccccccccCHHHHHHhhCHHHHHHHHHHHH
Confidence            3468999999999999999999998  8999999998654  45666666654321          1111222333333 


Q ss_pred             --HHHHHHHHHHhCCeeE-EeeceeeeCCCC--hhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEec
Q 015088           72 --CLLWEQAQSEIGYKVY-FKAHQFDMGPSE--NKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATE  145 (413)
Q Consensus        72 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (413)
                        ...+.++.++.++++. ...+.+.....+  ...+++..+.++..|++ +++++.+++.++++.    +....+++.+
T Consensus       100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~----~~~~~g~~~~  175 (460)
T TIGR03329       100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS----ARHLEGFYSP  175 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC----CcceEEEEeC
Confidence              4444556666777763 446766655332  23455666677778876 589999999998875    3455689999


Q ss_pred             CCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      .+++++|.+++..|.+.+++.|++|+++++|++|+.  .   +.+.|+|.+|+ ++||+||+|+|+|+..+++.+ +  .
T Consensus       176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~---~~~~v~t~~g~-v~A~~VV~Atga~s~~l~~~~-~--~  246 (460)
T TIGR03329       176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G---QPAVVRTPDGQ-VTADKVVLALNAWMASHFPQF-E--R  246 (460)
T ss_pred             CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C---CceEEEeCCcE-EECCEEEEcccccccccChhh-c--C
Confidence            999999999999999999999999999999999976  4   45678888886 999999999999998887765 3  3


Q ss_pred             ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CC----CCCCCCCCCCCchhHH
Q 015088          226 PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GY----PCDPDRRPWGPGLLLD  300 (413)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~  300 (413)
                      ++.+++++++..+..+........ .....+........|+++..+  |-+.++... ..    ..++...  ......+
T Consensus       247 ~~~p~~~~~~~t~pl~~~~~~~~~-~~~~~~~d~~~~~~y~r~~~d--grll~G~~~~~~~~~~~~~~~~~--~~~~~~~  321 (460)
T TIGR03329       247 SIAIVSSDMVITEPAPDLLAATGL-DHGTSVLDSRIFVHYYRSTPD--GRLMLGKGGNTFAYGGRMLPVFN--QPSPYEA  321 (460)
T ss_pred             eEEEeccceEecCCCcHHHHhhcC-CCCceEecchhhhhheeECCC--CcEEEcCCccccccCcccccccC--CchHHHH
Confidence            566677776655421110000000 000112121222247777654  433443211 11    1111111  1122467


Q ss_pred             HHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCC
Q 015088          301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGE  377 (413)
Q Consensus       301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~  377 (413)
                      .|.+.+.++||.+.+. ++.+.|+|++++|+|+.|+||+++..  +|+|+++||+|+|++++|++|+++|++|++++
T Consensus       322 ~l~~~~~~~fP~L~~~-~i~~~W~G~~~~t~D~~P~iG~~~~~--~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~~  395 (460)
T TIGR03329       322 LLTRSLRKFFPALAEV-PIAASWNGPSDRSVTGLPFFGRLNGQ--PNVFYGFGYSGNGVAPSRMGGQILSSLVLGLD  395 (460)
T ss_pred             HHHHHHHHhCCCcCCC-eeeEEEeceeCCCCCCCceeeeecCC--CCEEEEeCcCCCChhHHHHHHHHHHHHhcCCC
Confidence            8999999999999875 67789999999999999999999876  89999999999999999999999999998443

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-38  Score=297.87  Aligned_cols=367  Identities=28%  Similarity=0.366  Sum_probs=269.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC----CChHHHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE----DYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~   81 (413)
                      .++||+|||||++|+++||+|+++|.+|+|+|+....+  +++..+++.+...+..    .....+...+..+|+.+...
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~--g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG--GAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEE   80 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC--cchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999988764  4555555555444433    24667788889999999888


Q ss_pred             hCCee-EEeeceeeeCCCCh----hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           82 IGYKV-YFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      ..... +...+.+.+.....    .......+..+......+.++..+..+..|. +..+....+++.+..+.++|..++
T Consensus        81 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~~a~~~~~~~~~~p~~~~  159 (387)
T COG0665          81 LGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPA-LGPDFVCGGLFDPTGGHLDPRLLT  159 (387)
T ss_pred             hCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCC-CCcccceeeEecCCCCcCCHHHHH
Confidence            76553 44455554443332    1234444445555544467888888888887 554545678999999999999999


Q ss_pred             HHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcC-CccceeEEEEEE
Q 015088          157 SMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITG-LELPIQAVETTV  234 (413)
Q Consensus       157 ~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g-~~~~~~~~~g~~  234 (413)
                      +.+.+.+++.| ..+..++.|..+..  . + ..+.|.|.+|+ +.|++||+|+|.|+..+.... + +.+++.|.++++
T Consensus       160 ~~l~~~~~~~G~~~~~~~~~~~~~~~--~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~-~~~~~~~~p~~~~~  233 (387)
T COG0665         160 RALAAAAEELGVVIIEGGTPVTSLER--D-G-RVVGVETDGGT-IEADKVVLAAGAWAGELAATL-GELPLPLRPVRGQA  233 (387)
T ss_pred             HHHHHHHHhcCCeEEEccceEEEEEe--c-C-cEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhc-CCCcCccccccceE
Confidence            99999999999 56666889988877  4 3 78899999998 999999999999999998877 6 678899999999


Q ss_pred             EEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCC--CCCCCCCCCCchhHHHHHHHHHhhcCC
Q 015088          235 CYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYP--CDPDRRPWGPGLLLDSLKEWIQGRFAG  312 (413)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~p~  312 (413)
                      +.+..++......    ..+..........|++|..+  +.+.++......  .+.+....  +.....+.+.+.+++|.
T Consensus       234 ~~~~~~~~~~~~~----~~~~~~~~~~~~~y~~~~~~--g~~~~g~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~P~  305 (387)
T COG0665         234 LTTEPPEGLLADG----LAPVVLVVDDGGGYIRPRGD--GRLRVGGTDEEGGDDPSDPERE--DLVIAELLRVARALLPG  305 (387)
T ss_pred             EEecCCCcccccc----ccceEEEecCCceEEEEcCC--CcEEEeecccccCCCCccccCc--chhHHHHHHHHHHhCcc
Confidence            9887544221100    01112222334478888743  444443321111  12211111  00356899999999999


Q ss_pred             CCCCCCCeeeceeeeeec-CCCCeEecC-CCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccc
Q 015088          313 RVDSNGPVATQLCMYSIT-PDEDFVIDF-LGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR  390 (413)
Q Consensus       313 ~~~~~~~~~~~~g~~~~t-~d~~p~ig~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R  390 (413)
                      +.+. .+...|+|.|+.| ||+.|+||+ .+ .  +|+|+++||+++|++++|++|+++|++|.++.. ..+...+.+.|
T Consensus       306 l~~~-~~~~~w~g~~~~t~pd~~P~iG~~~~-~--~~l~~a~G~~~~G~~~~p~~g~~lA~li~g~~~-~~~~~~~~~~~  380 (387)
T COG0665         306 LADA-GIEAAWAGLRPPTTPDGLPVIGRAAP-L--PNLYVATGHGGHGFTLAPALGRLLADLILGGEP-ELDLRPLLLDR  380 (387)
T ss_pred             cccc-ccceeeeccccCCCCCCCceeCCCCC-C--CCEEEEecCCCcChhhccHHHHHHHHHHcCCCC-CCCcccccccc
Confidence            9875 5677999999987 999999995 77 7  999999999999999999999999999994444 66777788777


Q ss_pred             cccC
Q 015088          391 FKEN  394 (413)
Q Consensus       391 ~~~~  394 (413)
                      |...
T Consensus       381 f~~~  384 (387)
T COG0665         381 FAPG  384 (387)
T ss_pred             cccc
Confidence            5543

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=100.00  E-value=8e-38  Score=287.86  Aligned_cols=370  Identities=19%  Similarity=0.257  Sum_probs=292.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ...||+|||||..|+++||+|+++|.+..+++..... .+++++...+.....+.... ...+...+...+.+++.+.+.
T Consensus        38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~l-tsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl  116 (856)
T KOG2844|consen   38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRL-TSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGL  116 (856)
T ss_pred             CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeee-ccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence            3589999999999999999999999995555554443 24566666666555344333 344556677788899999988


Q ss_pred             ee-EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088           85 KV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        85 ~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      .. +.+.|++.+....  .+.++++......++.+.+.+++++..+++|. ++.++...++|.|.++.+||..+|++|..
T Consensus       117 ~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pL-Ln~d~v~g~Ly~P~DG~~DP~~lC~ala~  195 (856)
T KOG2844|consen  117 HTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPL-LNVDDVYGGLYSPGDGVMDPAGLCQALAR  195 (856)
T ss_pred             CcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcc-cchhHheeeeecCCCcccCHHHHHHHHHH
Confidence            76 7788888887543  34566777777889999999999999999998 88889999999999999999999999999


Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE  241 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~  241 (413)
                      .+.+.|+.|++++.|++|..  .+ ++.+.|.|..|. |++.+||+|+|.|+..+-.+. +..+|+.|+..++++.+..+
T Consensus       196 ~A~~~GA~viE~cpV~~i~~--~~-~~~~gVeT~~G~-iet~~~VNaaGvWAr~Vg~m~-gvkvPL~p~~H~YvvT~~Ie  270 (856)
T KOG2844|consen  196 AASALGALVIENCPVTGLHV--ET-DKFGGVETPHGS-IETECVVNAAGVWAREVGAMA-GVKVPLVPMHHAYVVTSRIE  270 (856)
T ss_pred             HHHhcCcEEEecCCcceEEe--ec-CCccceeccCcc-eecceEEechhHHHHHhhhhc-CCcccceeeeeeEEEecccC
Confidence            99999999999999999987  53 356699999998 999999999999998777665 89999999999998877544


Q ss_pred             CCCCccccCCCCC-eEEEcCCCceEecCCCCCCCcEEEecCCCCCC----CCCC--CCCCC-chhHHHHHHHHHhhcCCC
Q 015088          242 GNEADYAVGGDFP-SFASYGDPYIYGTPSLEYPGLIKIALHGGYPC----DPDR--RPWGP-GLLLDSLKEWIQGRFAGR  313 (413)
Q Consensus       242 ~~~~~~~~~~~~~-~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~----~~~~--~~~~~-~~~~~~l~~~~~~~~p~~  313 (413)
                      +..    +   ++ .+..+.+..+|++...+  +.+.+++..+...    .+..  ..+++ .+........+..+.|.+
T Consensus       271 Gi~----s---~t~p~irD~DgSvylR~~~~--gil~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l  341 (856)
T KOG2844|consen  271 GVS----S---LTRPNIRDLDGSVYLRQQGD--GILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVL  341 (856)
T ss_pred             Ccc----C---CCccceecccceEEEEecCC--ceeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchh
Confidence            321    1   22 24455566788876653  5555544222111    0100  00111 115567778888899999


Q ss_pred             CCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccccc
Q 015088          314 VDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       314 ~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~  393 (413)
                      .+. .+...-+|.-.+|||..|++|+.|..  .|.|+++|+|+.|++.+-++|+.++++|.+|++ +.|+..|++.||..
T Consensus       342 ~k~-~i~~~v~gpe~ftPD~~p~mGe~p~~--~gy~v~~G~ns~G~~~~GG~Gk~la~wi~~g~p-~~d~~~~D~~Rf~~  417 (856)
T KOG2844|consen  342 EKA-GIKSLVNGPETFTPDHLPIMGESPEV--RGYWVACGFNSAGLSFGGGCGKYLAEWIIHGQP-PLDVHELDLRRFGK  417 (856)
T ss_pred             hhc-CccceecCccccCCccccccCCCccc--cceEEeecCCccceeccCchhHHHHHHhhcCCC-CccchhccHHHhhh
Confidence            975 66667889999999999999999999  999999999999999999999999999999999 78999999999987


Q ss_pred             CC
Q 015088          394 NP  395 (413)
Q Consensus       394 ~~  395 (413)
                      ..
T Consensus       418 ~~  419 (856)
T KOG2844|consen  418 LQ  419 (856)
T ss_pred             hh
Confidence            53

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=264.40  Aligned_cols=378  Identities=20%  Similarity=0.242  Sum_probs=284.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      .++||+|||||..|+++|+.|.++    |++|+|+|+++.- ..+++.-+.|.+...+.-+...++...+.++++...+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty-tqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh  163 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY-TQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH  163 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc-cccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence            379999999999999999999874    7999999998754 23444445566777777777788888888888888777


Q ss_pred             hCC------ee-EEeeceeeeCCCC-hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEE-EEecCCceeCh
Q 015088           82 IGY------KV-YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVG-VATELGGVIKP  152 (413)
Q Consensus        82 ~~~------~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  152 (413)
                      +++      ++ +.+.|.+.+..++ .+.++...+...+.|...+.++++++.+++|+ ++......+ .-....|++||
T Consensus       164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPw-lntegVaLa~lG~e~EGwfdp  242 (509)
T KOG2853|consen  164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPW-LNTEGVALASLGVEKEGWFDP  242 (509)
T ss_pred             hccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCc-ccccceeeeecccccccccCH
Confidence            764      23 5678888877654 44567777778889999999999999999999 775554443 44567899999


Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecc---------cCC---------CeEEEEcCCC--cEEEcCEEEEcCCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD---------AVK---------GGVTVVTSNG--EKFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~---------~~~---------~~~~v~~~~g--~~i~ad~VV~A~G~~  212 (413)
                      -.+...+++.+...|+.+. +-+|+.++.  +         |++         .++.|+..++  +.++++.+|+|+|+|
T Consensus       243 w~LLs~~rrk~~~lGv~f~-~GeV~~Fef--~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~  319 (509)
T KOG2853|consen  243 WALLSGIRRKAITLGVQFV-KGEVVGFEF--ESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW  319 (509)
T ss_pred             HHHHHHHHHHhhhhcceEe-cceEEEEEE--ecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence            9999999999999999998 567888775  3         111         1233444443  268899999999999


Q ss_pred             hHHhhhhh--------cCCccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC
Q 015088          213 VGKLVKRI--------TGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY  284 (413)
Q Consensus       213 s~~l~~~~--------~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~  284 (413)
                      +.++.+..        +...+|+.|.|.++..+..+..      |...+|.....+  .+|++...-...++ .|-....
T Consensus       320 s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~------PGl~~Pl~iDps--G~f~Rrdglg~nfl-~grsp~e  390 (509)
T KOG2853|consen  320 SGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDV------PGLDTPLTIDPS--GVFFRRDGLGGNFL-CGRSPSE  390 (509)
T ss_pred             HHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCC------CCCCCceeECCC--ccEEEecCCCCcee-cccCCcc
Confidence            99887654        1235789999999888875531      223466665444  36776654322222 2211111


Q ss_pred             CCCCC--CCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeee-cCCCCeEecCCCCCCCCCEEEEeCCCCCCCcc
Q 015088          285 PCDPD--RRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSI-TPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKM  361 (413)
Q Consensus       285 ~~~~~--~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~  361 (413)
                      +..|+  ..+.+++.+.+.++..+....|.+... ++...|+|++.. |-|..++||++|..  .|+|+++|++|||+..
T Consensus       391 d~~~d~~nldVD~d~F~qkiwP~L~nRVP~feta-kVqsaWaGyyD~NtfD~ngViG~HP~y--~Nly~atGFsghGvqq  467 (509)
T KOG2853|consen  391 DEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETA-KVQSAWAGYYDHNTFDDNGVIGEHPLY--TNLYMATGFSGHGVQQ  467 (509)
T ss_pred             ccCCCccccccChHHHHhhhhHHHHhccccccee-eeeehhcccccccccccCCcccCCcce--eeeeeeecccccchhc
Confidence            11122  222233337788888999999999976 788899999875 88999999999998  9999999999999999


Q ss_pred             chHHHHHHHHHHhcCCCCccccccccccccccCCCCCCc
Q 015088          362 APAVGRILADLVLSGEAQGVELQHFRISRFKENPKGNVK  400 (413)
Q Consensus       362 a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~~~~~  400 (413)
                      +|++|+.+|++|++|+...+|+..|+.+|+...+-..|.
T Consensus       468 s~avgRAiaElIldG~f~tidLsrf~f~Rlv~~qpi~E~  506 (509)
T KOG2853|consen  468 SPAVGRAIAELILDGAFITIDLSRFDFRRLVKMQPITEP  506 (509)
T ss_pred             chHHHHHHHHHHhcCceeEEeccccchhHHhccCccccc
Confidence            999999999999999999999999999999887655443

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=100.00  E-value=1.4e-36  Score=283.99  Aligned_cols=335  Identities=18%  Similarity=0.203  Sum_probs=241.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCee
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      +||+|||||++|+++|++|+++|++|+|||+....  .++|..+.+.+...... .....+...+.+.|+++.++.+.. 
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~--~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-   77 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA--QGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIW-   77 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCC-
Confidence            59999999999999999999999999999998754  45666666666532222 345678888999999998887765 


Q ss_pred             EEeeceeeeCCCCh--hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           87 YFKAHQFDMGPSEN--KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        87 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      +.+.+.+.+...+.  +.+....+.....+.+.++++++++.+.+|. +..+....+++.+.++++||..++..|.+.+.
T Consensus        78 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~  156 (365)
T TIGR03364        78 VRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPA-LRLDGLRGGLHSPDELRVEPREAIPALAAYLA  156 (365)
T ss_pred             EEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCC-CCccCceEEEEcCCCeeECHHHHHHHHHHHHH
Confidence            45667766643322  2234444445566777899999999999997 54355567888899999999999999999887


Q ss_pred             HC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCC
Q 015088          165 KN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGN  243 (413)
Q Consensus       165 ~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~  243 (413)
                      +. |++++++++|++|+.  .      .|.|.+|+ ++||+||+|+|+|+..+++.+ +..+++.|.+++++.++..+..
T Consensus       157 ~~~Gv~i~~~t~V~~i~~--~------~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p~~~q~~~~~p~~~~  226 (365)
T TIGR03364       157 EQHGVEFHWNTAVTSVET--G------TVRTSRGD-VHADQVFVCPGADFETLFPEL-FAASGVRRCKLQMMRTAPQPRL  226 (365)
T ss_pred             hcCCCEEEeCCeEEEEec--C------eEEeCCCc-EEeCEEEECCCCChhhhCcch-hhccCcceEEEEeeeccCCCCC
Confidence            75 999999999999855  2      57777786 889999999999999888776 6678999999999877633211


Q ss_pred             C--CccccCC-----------------------CCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchh
Q 015088          244 E--ADYAVGG-----------------------DFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL  298 (413)
Q Consensus       244 ~--~~~~~~~-----------------------~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (413)
                      .  ..+....                       ..|.+. .....+|++|..+  |.+.+|........++.  ......
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~--g~~~iG~~~~~~~~~~~--~~~~~~  301 (365)
T TIGR03364       227 PLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELL-EWGIHLMVSQNPD--GELIIGDSHEYGLAPDP--FDDEEI  301 (365)
T ss_pred             cCCccccccceeeechhHhhCcchHHHHhhhcccCchhh-hcCeEEEEEECCC--CCEEecCcccccCCCCC--cchHHH
Confidence            0  0000000                       001111 1122478888765  43444432212111111  112225


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHH
Q 015088          299 LDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGR  367 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~  367 (413)
                      .+.+.+.+.+++ .+.+. ++...|+|+|++|+|..|+++..  .  +|+|+++||+|+|+++||++|+
T Consensus       302 ~~~l~~~~~~~~-~l~~~-~~~~~w~G~r~~t~d~~~v~~~~--~--~g~~~a~G~~g~G~~~ap~~~~  364 (365)
T TIGR03364       302 DNLILAEAKTIL-GLPDL-DIVERWQGVYASSPPAPIFLERP--D--DGVTVVVVTSGAGMTLSFGLAE  364 (365)
T ss_pred             HHHHHHHHHHhc-CCCCC-ceEEEEeEEecCCCCCCceecCC--C--CCeEEEEecCCCcccccccccC
Confidence            566777787776 57664 67889999999999988888744  3  8999999999999999999885

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=100.00  E-value=1.6e-36  Score=284.54  Aligned_cols=336  Identities=21%  Similarity=0.244  Sum_probs=244.8

Q ss_pred             HHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC--CChHHHH----HHHHHHHHHHHHHhCCee-EEeeceee
Q 015088           22 AAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE--DYYHPMV----LESCLLWEQAQSEIGYKV-YFKAHQFD   94 (413)
Q Consensus        22 ~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~--~~~~~l~----~~~~~~~~~~~~~~~~~~-~~~~~~~~   94 (413)
                      +||+|+++|++|+|||+....+ .++|+.+.|.+......  ....++.    ..+.++|.++.+. +.++ +...+.+.
T Consensus         1 ~A~~La~~G~~V~vlE~~~~~~-~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~~~~~~~~~G~L~   78 (381)
T TIGR03197         1 TAYSLARRGWQVTLYEQDEAPA-QGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-GFPFDHEWCGVLQ   78 (381)
T ss_pred             ChHHHHhCCCeeEEEeCCCccc-ccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCcccccCceEE
Confidence            5899999999999999975442 35666667777654322  2233443    3456778887653 5554 34567776


Q ss_pred             eCCCChhhHHHHHHHHhhCCCCc---cccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEE
Q 015088           95 MGPSENKSLRSVIASCRKNSVPH---QVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLR  171 (413)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~  171 (413)
                      +.... +.+..+.+..+..+.+.   ++++.+++.+.++.    .....+++.+.++++||..++..|.+.+.+ |++++
T Consensus        79 ~a~~~-~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~----~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~  152 (381)
T TIGR03197        79 LAYDE-KEAERLQKLLEQLGFPEELARWVDAEQASQLAGI----PLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLH  152 (381)
T ss_pred             ecCCh-HHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCC----CCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEE
Confidence            65442 33334444444455543   46788888887653    445678899999999999999999999998 99999


Q ss_pred             cCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCC
Q 015088          172 DNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGG  251 (413)
Q Consensus       172 ~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  251 (413)
                      ++++|++|+.  +  ++.+.|+|.+|..++||.||+|+|+|+..+.+.   ..+|+.|.+|+++.++.++..    .   
T Consensus       153 ~~~~V~~i~~--~--~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~---~~~pi~p~rg~~~~~~~~~~~----~---  218 (381)
T TIGR03197       153 FNTEITSLER--D--GEGWQLLDANGEVIAASVVVLANGAQAGQLAQT---AHLPLRPVRGQVSHLPATEAL----S---  218 (381)
T ss_pred             eCCEEEEEEE--c--CCeEEEEeCCCCEEEcCEEEEcCCccccccccc---ccCCccccccceeeccCCCcc----c---
Confidence            9999999988  6  456889988887789999999999999887764   367899999999887643211    0   


Q ss_pred             CCCeEEEcCCCceEecCCCCCCCcEEEec-CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCC-----CCCCCeeecee
Q 015088          252 DFPSFASYGDPYIYGTPSLEYPGLIKIAL-HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRV-----DSNGPVATQLC  325 (413)
Q Consensus       252 ~~~~~~~~~~~~~y~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~-----~~~~~~~~~~g  325 (413)
                      .++.....+   .|++|..+  |.+.+|. ......++.   . .....+.+.+.+.+++|.+.     +. ++...|+|
T Consensus       219 ~~~~~~~~~---~y~~p~~~--g~~~iG~t~~~~~~~~~---~-~~~~~~~~~~~~~~~~P~l~~~~~~~~-~~~~~~~G  288 (381)
T TIGR03197       219 ALKTVLCYD---GYLTPANN--GEHCIGASYDRNDDDLA---L-READHAENLERLAECLPALAWASEVDI-SALQGRVG  288 (381)
T ss_pred             ccCceEeCC---ceecccCC--CceEeecccCCCCCCCC---c-CHHHHHHHHHHHHHhCcccchhhccCc-cccCceEE
Confidence            133333222   58888765  4344443 221111111   1 11257788899999999886     54 67889999


Q ss_pred             eeeecCCCCeEecCCCC-------------------------CCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCc
Q 015088          326 MYSITPDEDFVIDFLGG-------------------------EFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQG  380 (413)
Q Consensus       326 ~~~~t~d~~p~ig~~~~-------------------------~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~  380 (413)
                      +|++|+|+.|+||.+|+                         .  +|+|+++|++|+|++++|++|+++|++|. +.+++
T Consensus       289 ~r~~t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~a~G~~g~G~~~ap~~g~~la~~i~-~~~~~  365 (381)
T TIGR03197       289 VRCASPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYY--PGLYVLGGLGSRGLTSAPLAAEILAAQIC-GEPLP  365 (381)
T ss_pred             EeccCCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCC--CCeEEEecccchHHHHHHHHHHHHHHHHh-CCCCC
Confidence            99999999999999987                         6  89999999999999999999999999998 55544


Q ss_pred             cc---cccccccccc
Q 015088          381 VE---LQHFRISRFK  392 (413)
Q Consensus       381 ~~---~~~~~~~R~~  392 (413)
                      .+   ++.|+|+||.
T Consensus       366 ~~~~~~~~~~~~rf~  380 (381)
T TIGR03197       366 LERDLLHALHPARFL  380 (381)
T ss_pred             CcHHHHHhcChhhhc
Confidence            44   4789999995

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=100.00  E-value=6.3e-35  Score=270.30  Aligned_cols=324  Identities=19%  Similarity=0.203  Sum_probs=246.0

Q ss_pred             HHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHh----CCee-EEeeceee
Q 015088           24 YQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEI----GYKV-YFKAHQFD   94 (413)
Q Consensus        24 ~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~   94 (413)
                      ++|+++|.+|+|||++...  .++|..+++.+....    ....+..+...+.++|+++.++.    +.++ +...|.+.
T Consensus         1 ~~La~~G~~V~vle~~~~~--~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l~   78 (337)
T TIGR02352         1 WELAKRGHSVTLFDRDPMG--GGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTLV   78 (337)
T ss_pred             ChHHHCCCceEEEcCCCCC--cccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEEE
Confidence            4799999999999998743  466766667665432    34456788888999999887654    5555 45678877


Q ss_pred             eCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEc
Q 015088           95 MGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRD  172 (413)
Q Consensus        95 ~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~  172 (413)
                      +...  +.+.+++..+..+..+.+.+.++.+++.+.+|. +. +....+++.+.+++++|..++..|.+.+.+.|+++++
T Consensus        79 ~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~-l~-~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~  156 (337)
T TIGR02352        79 VAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPY-LS-GGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE  156 (337)
T ss_pred             EeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCC-CC-cccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence            6543  334456667777778888999999999999987 54 4456788889999999999999999999999999999


Q ss_pred             CceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCC
Q 015088          173 NMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGD  252 (413)
Q Consensus       173 ~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  252 (413)
                      +++|+++..  ++ +..+.|.+.+|. ++||.||+|+|+|+..+..      +++.+.+++++.++.+....      ..
T Consensus       157 ~~~v~~i~~--~~-~~~~~v~~~~g~-~~a~~vV~a~G~~~~~l~~------~~~~~~~g~~~~~~~~~~~~------~~  220 (337)
T TIGR02352       157 HTEVQHIEI--RG-EKVTAIVTPSGD-VQADQVVLAAGAWAGELLP------LPLRPVRGQPLRLEAPAVPL------LN  220 (337)
T ss_pred             cceEEEEEe--eC-CEEEEEEcCCCE-EECCEEEEcCChhhhhccc------CCccccCceEEEeecccccc------CC
Confidence            999999988  62 234567888884 9999999999999987654      57899999998887543111      01


Q ss_pred             CCeEEEcCCCceEecCCCCCCCcEEEecCCC-CCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC
Q 015088          253 FPSFASYGDPYIYGTPSLEYPGLIKIALHGG-YPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP  331 (413)
Q Consensus       253 ~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                      .+......+...|++|..+  +.+++|.... ...+   ... ..+..+.+.+.+.++||.+.+. ++...|+|+|++|+
T Consensus       221 ~~~~~~~~~~~~y~~p~~~--g~~~iG~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~r~~t~  293 (337)
T TIGR02352       221 RPLRAVVYGRRVYIVPRRD--GRLVVGATMEESGFD---TTP-TLGGIKELLRDAYTILPALKEA-RLLETWAGLRPGTP  293 (337)
T ss_pred             cccceEEEcCCEEEEEcCC--CeEEEEEeccccCcc---CCC-CHHHHHHHHHHHHHhCCCcccC-cHHHheecCCCCCC
Confidence            2221111122378888764  4344444221 1111   111 1236889999999999999875 67889999999999


Q ss_pred             CCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcC
Q 015088          332 DEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG  376 (413)
Q Consensus       332 d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g  376 (413)
                      |+.|+||.+|..  +|+|+++|+||+|++++|++|+++|++|.++
T Consensus       294 D~~piig~~~~~--~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~  336 (337)
T TIGR02352       294 DNLPYIGEHPED--RRLLIATGHYRNGILLAPATAEVIADLILGK  336 (337)
T ss_pred             CCCCEeCccCCC--CCEEEEcccccCceehhhHHHHHHHHHHhcC
Confidence            999999999987  8999999999999999999999999999854

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=4.9e-33  Score=261.93  Aligned_cols=345  Identities=17%  Similarity=0.168  Sum_probs=250.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeeccc--C-CCChHHHHHHHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY--P-EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      ++||+|||||++|+++|++|+++  |++|+|||+....+ .++|..+.+.++...  . ......+...+...|.++.++
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~-~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   80 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA-RHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ   80 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc-ccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999  99999999986543 345666667666532  1 122467888899999999888


Q ss_pred             hCCeeEEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           82 IGYKVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      .+.. +...|.+.+...+  ...+.+..+..+..+.+.+.++.+++.+.+|. +.   ...+++.+.++++++..+++.|
T Consensus        81 ~~~~-~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~-l~---~~~al~~p~~g~vd~~~l~~aL  155 (393)
T PRK11728         81 HGIP-YEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPN-IR---GLGAIFVPSTGIVDYRAVAEAM  155 (393)
T ss_pred             cCCC-cccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCC-cc---ccceEEcCCceEECHHHHHHHH
Confidence            7765 4466777665432  23455666777778888899999999999997 33   3578899999999999999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc--cceeEEEEEEEEE
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE--LPIQAVETTVCYW  237 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~~~~~~g~~~~~  237 (413)
                      .+.+++.|++++++++|.++..  +  ++.+.|.+.+|+ +++|.||+|+|.|+..+.+.+ +..  .++.|.+|+++.+
T Consensus       156 ~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g~-i~ad~vV~A~G~~s~~l~~~~-g~~~~~~v~p~rGq~~~~  229 (393)
T PRK11728        156 AELIQARGGEIRLGAEVTALDE--H--ANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMA-GLEPDFRIVPFRGEYYRL  229 (393)
T ss_pred             HHHHHhCCCEEEcCCEEEEEEe--c--CCeEEEEECCCE-EEeCEEEECCCcchHHHHHHh-CCCCCCceEEeeeEEEEe
Confidence            9999999999999999999987  6  356778887774 999999999999998888766 653  7899999999888


Q ss_pred             EecCCCCCccccCCCCCeEE-E---cCCCceEecCCCCCCCcEEEec--CCC---CCCCCCCCC---C----C-------
Q 015088          238 RIKEGNEADYAVGGDFPSFA-S---YGDPYIYGTPSLEYPGLIKIAL--HGG---YPCDPDRRP---W----G-------  294 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~y~~p~~~~~~~~~~~~--~~~---~~~~~~~~~---~----~-------  294 (413)
                      ..+....  + .   ..++. .   .....+|++|..+  |.+.+|.  +..   ...+.....   +    .       
T Consensus       230 ~~~~~~~--~-~---~~v~~~p~~~~~~~g~~~~p~~~--G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (393)
T PRK11728        230 APEKNQL--V-N---HLIYPVPDPAFPFLGVHLTRMID--GSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKL  301 (393)
T ss_pred             ccccccc--c-C---CceecCCCCCCCcceEEeecCCC--CCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHH
Confidence            6432110  0 0   11110 0   0012378888765  5555553  110   111110000   0    0       


Q ss_pred             ----CchhHHHH---------HHHHHhhcCCCCCCCCCeeeceeeee--ecCCCCeEecCCCCCCCCCEEEEeCCCCCCC
Q 015088          295 ----PGLLLDSL---------KEWIQGRFAGRVDSNGPVATQLCMYS--ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF  359 (413)
Q Consensus       295 ----~~~~~~~l---------~~~~~~~~p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~  359 (413)
                          ....++++         .+.+.+++|.+.+. .+...|+|+||  +++|+.|+-+.+-.. .++.+.+.|..+-|+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~-~i~~~~~G~Rp~~~~~d~~~~~d~~i~~-~~~~~~~~~~~spg~  379 (393)
T PRK11728        302 AQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLS-DLQPYPAGVRAQAVSRDGKLVDDFLFVE-TPRSLHVCNAPSPAA  379 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHH-HcccCCCceeeeeeCCCCCccCceEEec-CCCEEEEcCCCCchH
Confidence                01133444         58899999999875 67789999999  899987655443221 167888999999999


Q ss_pred             ccchHHHHHHHHHH
Q 015088          360 KMAPAVGRILADLV  373 (413)
Q Consensus       360 ~~a~~~a~~la~~i  373 (413)
                      |.||.+|+.+++++
T Consensus       380 t~s~~ia~~v~~~~  393 (393)
T PRK11728        380 TSSLPIGEHIVSKV  393 (393)
T ss_pred             HccHHHHHHHHhhC
Confidence            99999999999863

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2e-30  Score=251.92  Aligned_cols=338  Identities=14%  Similarity=0.157  Sum_probs=232.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      .++||+|||||++|+++|++|+++|++|+|||+++..  .++|..+++.++....    ..............+.++...
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~--~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~   82 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA--TGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH   82 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC--CCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence            4699999999999999999999999999999998764  4677777787775322    111112222333444444433


Q ss_pred             hCCeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           82 IGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                          ++...+.+.+...  +...+....+.+...|++.+.++++++.+++|. ++ +....+++.+ ++++||.+++..+
T Consensus        83 ----~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~-l~-~~~~ga~~~~-dg~vdp~rl~~al  155 (546)
T PRK11101         83 ----CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA-VN-PALIGAVKVP-DGTVDPFRLTAAN  155 (546)
T ss_pred             ----hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCC-cC-ccceEEEEec-CcEECHHHHHHHH
Confidence                2334444444322  223345556667788888999999999999998 54 3455677777 5799999999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCC--cEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNG--EKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV  234 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~  234 (413)
                      ...+.++|++++++++|+++..  ++ +..+.|++   .++  .+|+|+.||+|+|+|+..+..+. +...++.|.+|++
T Consensus       156 ~~~A~~~Ga~i~~~t~V~~i~~--~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~  231 (546)
T PRK11101        156 MLDAKEHGAQILTYHEVTGLIR--EG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFPAKGSL  231 (546)
T ss_pred             HHHHHhCCCEEEeccEEEEEEE--cC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhc-CCCCceeecceEE
Confidence            9999999999999999999988  62 23333443   233  36999999999999999998766 8889999999999


Q ss_pred             EEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCC-C-CCCCCCCCCCchhHHHHHHHHHhhc
Q 015088          235 CYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGY-P-CDPDRRPWGPGLLLDSLKEWIQGRF  310 (413)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~  310 (413)
                      +.++...  ..       .....  ...+. .|+.|.   .+.+.+|++... . .+++....+ .+.++.|++.+.+++
T Consensus       232 lv~~~~~--~~-------~vi~~~~~~~~~-~~~vp~---~~~~liGtT~~~~~~~~~~~~~~t-~~~i~~Ll~~~~~l~  297 (546)
T PRK11101        232 LIMDHRI--NN-------HVINRCRKPADA-DILVPG---DTISLIGTTSTRIDYDQIDDNRVT-AEEVDILLREGEKLA  297 (546)
T ss_pred             EEECCcc--Cc-------eeEeccCCCCCC-CEEEec---CCEEEEeeCCCCccCCCcCCCCCC-HHHHHHHHHHHHHhC
Confidence            9875211  10       00000  01112 244553   244445543321 1 122212222 237889999999999


Q ss_pred             CCCCCCCCCeeeceeeeeecC-CC----------CeEecCC--CCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcC
Q 015088          311 AGRVDSNGPVATQLCMYSITP-DE----------DFVIDFL--GGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG  376 (413)
Q Consensus       311 p~~~~~~~~~~~~~g~~~~t~-d~----------~p~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g  376 (413)
                      |.+.+. .++..|+|+||.+. +.          .++++..  +..  +|++.++|  | .++..+.+|+.+++++.+.
T Consensus       298 P~l~~~-~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~--~gli~i~G--G-kltt~r~~Ae~v~d~v~~~  370 (546)
T PRK11101        298 PVMAKT-RILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGL--DGFITITG--G-KLMTYRLMAEWATDAVCRK  370 (546)
T ss_pred             CCCCcc-CEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCC--CCeEEEEC--C-hHHHHHHHHHHHHHHHHHh
Confidence            999875 78889999999743 22          2677743  334  78999997  3 3899999999999999743

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.97  E-value=9.1e-30  Score=212.71  Aligned_cols=350  Identities=21%  Similarity=0.191  Sum_probs=228.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g------~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   78 (413)
                      .+..+|+|||||+.|+++||+|++++      +.|+|+|.....+  ++|+..++.+...........++..++.+++++
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~--gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L   85 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG--GASGKASGFLAKWCQPSIIQPLATLSFKLHEEL   85 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc--ccccccchhhHhhhCCcccchhhHHHHHHHHHH
Confidence            34578999999999999999999987      7999999988764  566666666663333334678899999999999


Q ss_pred             HHHhCC-ee--EEeeceeeeCCC-ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEE-ecCCceeChH
Q 015088           79 QSEIGY-KV--YFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVA-TELGGVIKPT  153 (413)
Q Consensus        79 ~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  153 (413)
                      .++++- .-  +.....+.+... +...       -.+.....+++.++....           ...+- ....++++|.
T Consensus        86 sdeydGvnnwgYRaltTws~ka~~en~~-------p~k~pegldWi~~e~v~~-----------~ssiG~t~ttaqvhP~  147 (380)
T KOG2852|consen   86 SDEYDGVNNWGYRALTTWSCKADWENTN-------PAKVPEGLDWIQRERVQK-----------CSSIGSTNTTAQVHPY  147 (380)
T ss_pred             HHhhcCcccccceeeeEEEEEeecccCC-------cccCCcchhhhhhHHhhh-----------heeccCCCccceeCHH
Confidence            888642 11  121122211110 0000       001111123333222111           11111 2345899999


Q ss_pred             HHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEc----CCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088          154 KAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVT----SNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ  228 (413)
Q Consensus       154 ~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~----~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~  228 (413)
                      .+++.+.+.+++.| |++.++ +|.++..  +. .....+-.    ........+++|+++|+|+.++++..     ++.
T Consensus       148 lFc~~i~sea~k~~~V~lv~G-kv~ev~d--Ek-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~-----rIs  218 (380)
T KOG2852|consen  148 LFCHFILSEAEKRGGVKLVFG-KVKEVSD--EK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT-----RIS  218 (380)
T ss_pred             HHHHHHHHHHHhhcCeEEEEe-eeEEeec--cc-ccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc-----ccc
Confidence            99999999998875 999975 6777743  21 12222211    11335678899999999999998754     777


Q ss_pred             EEEEEEEEEEecCCCCCccccCCCCCeEEEcC-----CCceEecCCCCCCCcEEEecCCCCCCCCCCCCCC-CchhHHHH
Q 015088          229 AVETTVCYWRIKEGNEADYAVGGDFPSFASYG-----DPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWG-PGLLLDSL  302 (413)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l  302 (413)
                      ..+-+.+.++++..   .+.+..-+-.+...+     .+..|.++..+  -++.+.+......+.+.++.. ..+...+|
T Consensus       219 glrihsI~l~~~e~---~v~~~avf~~l~~~~g~ei~~pe~y~rkd~E--vyicg~~~~e~~lPedsd~v~~npeki~~L  293 (380)
T KOG2852|consen  219 GLRIHSITLSPGEK---PVGPSAVFCELNTMDGLEICKPEEYARKDRE--VYICGETDKEHLLPEDSDDVFVNPEKIIEL  293 (380)
T ss_pred             eeeeeeEEecCCCC---CCCCceEEEEEEeCCCccccCcceeecCCce--EEEecCCCccccCCcccccceeCHHHHHHH
Confidence            78888887774432   122211011111222     23467666532  222222222222222222211 22378888


Q ss_pred             HHHHHhhcCCCCCCCCCeeeceeeeeecCC-CCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcc
Q 015088          303 KEWIQGRFAGRVDSNGPVATQLCMYSITPD-EDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGV  381 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d-~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~  381 (413)
                      .+.+..+.+.+.+. .+...++|+-|.+.+ +.|+||+.+    .++|+++||+-+|++.+|+.|+.+|++|++|+.+..
T Consensus       294 k~~a~~v~s~l~ks-~v~~~qacfLP~sn~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~mAEllldgeaTSa  368 (380)
T KOG2852|consen  294 KEMADLVSSELTKS-NVLDAQACFLPTSNITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKCMAELLLDGEATSA  368 (380)
T ss_pred             HHHHHHhhhhhccc-hhhhhhhccccccCCCCCceEeecC----CceEEeecccccceecCcchhHHHHHHHhccceeee
Confidence            88888888888875 567789999999877 999999998    689999999999999999999999999999999999


Q ss_pred             cccccccccccc
Q 015088          382 ELQHFRISRFKE  393 (413)
Q Consensus       382 ~~~~~~~~R~~~  393 (413)
                      ++++|+|++|.+
T Consensus       369 nid~f~p~~~~~  380 (380)
T KOG2852|consen  369 NIDPFDPNLGEK  380 (380)
T ss_pred             ecCccCccccCC
Confidence            999999999853

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=3.5e-28  Score=234.89  Aligned_cols=347  Identities=18%  Similarity=0.174  Sum_probs=221.0

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc--cCCCChHHHHHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YPEDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      |..++||+|||||++|+++|++|+++|++|+|||+++..  .++|+.+++.++..  +.......+..++...+..+.+.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~--~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~   80 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA--QGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAA   80 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC--CCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence            455799999999999999999999999999999999765  45666666666543  22222456666666666665554


Q ss_pred             hCCeeEEeeceeeeCCC--ChhhHH-----HHHHHHh-hCCC-CccccCHHHHHHHcCCcccCCCCeEEEEecCCceeCh
Q 015088           82 IGYKVYFKAHQFDMGPS--ENKSLR-----SVIASCR-KNSV-PHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKP  152 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~-~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (413)
                      ... +....+ +.+...  ....+.     .+++.+. ...+ +.+.++..+..+..+.    .....+.+...+++++|
T Consensus        81 ap~-l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l----~~~~~~a~~~~dg~vd~  154 (502)
T PRK13369         81 APH-IIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPL----KPEYTKGFEYSDCWVDD  154 (502)
T ss_pred             CCc-cccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCc----hHhcCEEEEEcCeeecH
Confidence            221 112222 222111  111111     1111111 1111 1344454444333331    22344556667789999


Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC----cEEEcCEEEEcCCCChHHhhhhhcCCc--cc
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG----EKFWGKKCVVTAGAWVGKLVKRITGLE--LP  226 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g----~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~  226 (413)
                      .+++..+...++++|++++.+++|+++..  +  ++.+.|.+.++    .+++|+.||+|+|+|+..+.+++.+..  .+
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~  230 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARR--E--GGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRN  230 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEE--c--CCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcc
Confidence            99999999999999999999999999988  6  45566665443    258999999999999999988654653  46


Q ss_pred             eeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHHHHH
Q 015088          227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSLKEW  305 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      +.|.+|+++.+....  .    . .....+...++..+|+.|+.+  +...+|+++.. ..+|+....+ .+..+.|++.
T Consensus       231 v~p~kG~~lv~~~~~--~----~-~~~~~~~~~dgr~~~i~P~~~--~~~liGtTd~~~~~~~~~~~~~-~~~i~~ll~~  300 (502)
T PRK13369        231 VRLVKGSHIVVPKFW--D----G-AQAYLFQNPDKRVIFANPYEG--DFTLIGTTDIAYEGDPEDVAAD-EEEIDYLLDA  300 (502)
T ss_pred             eEEeeEEEEEeCCcc--C----C-CceEEEeCCCCeEEEEEEecC--CEEEEEecCccccCCCCCCCCC-HHHHHHHHHH
Confidence            999999988764211  0    1 011122223344578999854  44444543321 2222222212 2378999999


Q ss_pred             HHhhcC-CCCCCCCCeeeceeeeeecCCC---------CeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088          306 IQGRFA-GRVDSNGPVATQLCMYSITPDE---------DFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS  375 (413)
Q Consensus       306 ~~~~~p-~~~~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~  375 (413)
                      +++++| .+... .++..|+|+||.++|+         ...|-.......++++.+.|   .++|..+.+|+.+++.+.+
T Consensus       301 ~~~~~~~~l~~~-~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~~  376 (502)
T PRK13369        301 ANRYFKEKLRRE-DVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLKP  376 (502)
T ss_pred             HHHhhCCCCCHh-HEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHHH
Confidence            999997 77753 6788999999998653         22232221110167888887   4899999999999999874


Q ss_pred             C
Q 015088          376 G  376 (413)
Q Consensus       376 g  376 (413)
                      .
T Consensus       377 ~  377 (502)
T PRK13369        377 F  377 (502)
T ss_pred             h
Confidence            3

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.97  E-value=1.2e-27  Score=230.90  Aligned_cols=347  Identities=17%  Similarity=0.142  Sum_probs=217.3

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~   78 (413)
                      |+| ...+||+|||||++|+++|+.|+++|++|+|||+++..+  ++|..+++.++...  .......+..+++..+..+
T Consensus         1 ~~~-~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l   77 (508)
T PRK12266          1 MTM-METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLAS--ATSSASTKLIHGGLRYLEHYEFRLVREALAEREVL   77 (508)
T ss_pred             CCC-CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC--CccccccccccchHHHhhhccHHHHHHHHHHHHHH
Confidence            664 456999999999999999999999999999999987764  44545555555432  2222456777777766666


Q ss_pred             HHHhCCeeEEeeceee-eCCCChhhH-HHH-HHHHhhCCCCccccCHHHHHHHc-----CCcccCCCCeEEEEecCCcee
Q 015088           79 QSEIGYKVYFKAHQFD-MGPSENKSL-RSV-IASCRKNSVPHQVLDCRQVLEKY-----SGRIEIPENWVGVATELGGVI  150 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  150 (413)
                      .+....-. .+...+. ......... ... .......+. ...++..+.....     +. +  .....+.+.+.++++
T Consensus        78 ~~~~p~~~-~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-~~~l~~~~~~~~~~~~~~~~-L--~~~l~g~~~~~dg~v  152 (508)
T PRK12266         78 LRMAPHII-WPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-RKSLPGSRGLDLGRDPAGSP-L--KPEITRGFEYSDCWV  152 (508)
T ss_pred             HHhCCCcc-cccceEEEecccccchHHHHHHHHHHHhhcC-CCCCChhhhhchhhcccCCC-c--chhhcEEEEEcCccc
Confidence            55432211 1111100 000000000 000 011111111 1122222222221     32 2  222333355667789


Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---Cc--EEEcCEEEEcCCCChHHhhhhhcCC--
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---GE--KFWGKKCVVTAGAWVGKLVKRITGL--  223 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~VV~A~G~~s~~l~~~~~g~--  223 (413)
                      ||.+++..+.+.+.++|++++++++|+++..  +  ++.+.+.+.+   |+  +++|+.||+|+|+|+..+.+++.+.  
T Consensus       153 d~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~--~--~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~  228 (508)
T PRK12266        153 DDARLVVLNARDAAERGAEILTRTRVVSARR--E--NGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPS  228 (508)
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCC
Confidence            9999999999999999999999999999987  6  3456665442   43  6899999999999999987754354  


Q ss_pred             ccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHH
Q 015088          224 ELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  302 (413)
                      ..++.+.+|+++.+....      .. .....+...++..+|+.|+.+  +...+|+++.. ..+++.... ..+..+.|
T Consensus       229 ~~~i~p~kG~~lvl~~~~------~~-~~~~~~~~~dgr~v~~~P~~~--g~~liGttd~~~~~~~~~~~~-~~~~i~~L  298 (508)
T PRK12266        229 PYGIRLVKGSHIVVPRLF------DH-DQAYILQNPDGRIVFAIPYED--DFTLIGTTDVEYKGDPAKVAI-SEEEIDYL  298 (508)
T ss_pred             CcceeeeeeEEEEECCcC------CC-CcEEEEeCCCCCEEEEEEeCC--CeEEEecCCCCCCCCCCCCCC-CHHHHHHH
Confidence            457999999988764211      11 111222233455578888854  45555554321 222222111 22378999


Q ss_pred             HHHHHhhcC-CCCCCCCCeeeceeeeeecCCCCe---------EecCC--CCCCCCCEEEEeCCCCCCCccchHHHHHHH
Q 015088          303 KEWIQGRFA-GRVDSNGPVATQLCMYSITPDEDF---------VIDFL--GGEFGEDVVVAGGFSGHGFKMAPAVGRILA  370 (413)
Q Consensus       303 ~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~--~~~~~~~~~~~~G~~~~G~~~a~~~a~~la  370 (413)
                      ++.+++++| .+... .++..|+|+||.++|+.|         +|-.+  .+.  +|++.++|   -.+|..+.+|+.++
T Consensus       299 l~~~~~~~p~~l~~~-~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~--~gli~v~G---gk~Tt~r~mAe~~~  372 (508)
T PRK12266        299 CKVVNRYFKKQLTPA-DVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGG--APLLSVFG---GKITTYRKLAEHAL  372 (508)
T ss_pred             HHHHHHhcCCCCCHH-HEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCC--CCeEEEEc---ChHHHHHHHHHHHH
Confidence            999999996 67653 678899999999988543         44333  222  67888887   35999999999999


Q ss_pred             HHHhc
Q 015088          371 DLVLS  375 (413)
Q Consensus       371 ~~i~~  375 (413)
                      +.+.+
T Consensus       373 ~~~~~  377 (508)
T PRK12266        373 EKLAP  377 (508)
T ss_pred             HHHHH
Confidence            99874

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.97  E-value=1.6e-27  Score=218.04  Aligned_cols=351  Identities=21%  Similarity=0.223  Sum_probs=262.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      ++||+|||||+.|+++|++|++++  ++|+||||...++ ..+|..+++++|....   .....+++......+.++.++
T Consensus         3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a-~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA-QESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc-cccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            689999999999999999999998  9999999998885 4566688888887642   234567888888888999999


Q ss_pred             hCCeeEEeeceeeeCC--CChhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           82 IGYKVYFKAHQFDMGP--SENKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      ++.++... +.+.+..  .+.+.++.+++.....++. .+.++++++.++.|. +. +....+++.+..+.+++..+...
T Consensus        82 ~~~~f~~~-g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~-l~-~~~~aal~~p~~giV~~~~~t~~  158 (429)
T COG0579          82 LGIPFINC-GKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPL-LN-EGAVAALLVPSGGIVDPGELTRA  158 (429)
T ss_pred             hCCccccc-CeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcc-cc-ccceeeEEcCCCceEcHHHHHHH
Confidence            99886554 6666543  3455678889999999998 789999999999998 44 34677899999999999999999


Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcE-EEcCEEEEcCCCChHHhhhhhcCCc--cceeEEEEEEE
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEK-FWGKKCVVTAGAWVGKLVKRITGLE--LPIQAVETTVC  235 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~VV~A~G~~s~~l~~~~~g~~--~~~~~~~g~~~  235 (413)
                      |.+.++++|++++++++|++|++  .++ +.+.+.+.+|++ ++|+.||+|+|.++..++++. |+.  ....|.+|+++
T Consensus       159 l~e~a~~~g~~i~ln~eV~~i~~--~~d-g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~-g~~~~~~~~P~~G~y~  234 (429)
T COG0579         159 LAEEAQANGVELRLNTEVTGIEK--QSD-GVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA-GIPEDFKIFPVRGEYL  234 (429)
T ss_pred             HHHHHHHcCCEEEecCeeeEEEE--eCC-ceEEEEecCCcEEEEeeEEEECCchhHHHHHHHh-CCCcccccCccceEEE
Confidence            99999999999999999999998  632 367778888876 999999999999999999887 654  46789999988


Q ss_pred             EEEecCCCC--Cccc--cCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCC-CCCCCchhHHHHHHHHHhhc
Q 015088          236 YWRIKEGNE--ADYA--VGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-RPWGPGLLLDSLKEWIQGRF  310 (413)
Q Consensus       236 ~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~  310 (413)
                      ++.......  ..+-  +..++|      ...++.+++.+  |.+.+|.+..+...-.. ......+..+.+.......+
T Consensus       235 ~~~~~~~~~~~~~Iy~~p~~~~p------~~gV~~~~~id--G~~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~  306 (429)
T COG0579         235 VLDNEVKALLRHKIYPVPNPGLP------GLGVHHTPTID--GSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGM  306 (429)
T ss_pred             EEcccccccccceeecCCCCCCC------CCcceeecccC--CeEEECCCcccchhhhccccccccchhhhHHHhhhhhc
Confidence            776311110  0000  001111      12245555533  55555543322200011 01111226788888888999


Q ss_pred             CCCCCCCCCeeeceeeee-----ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088          311 AGRVDSNGPVATQLCMYS-----ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS  375 (413)
Q Consensus       311 p~~~~~~~~~~~~~g~~~-----~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~  375 (413)
                      |.+.-.........|.||     ..+....++-...+.  ++.....|.-..|++-+|..++.+.+++..
T Consensus       307 ~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~--~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~  374 (429)
T COG0579         307 PDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDE--DWFINVAGIRSQGLTADPAIAGGVLELLTE  374 (429)
T ss_pred             ccccccccchhhhheeccccccccccccceecccccCC--CCceeeeeEEccccccChhHhhhHhhhccc
Confidence            988721246667889999     466666777656555  788888899999999999999999999863

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.97  E-value=2e-27  Score=233.35  Aligned_cols=350  Identities=15%  Similarity=0.109  Sum_probs=216.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---------CCChHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---------EDYYHPMVLESCLLW   75 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---------~~~~~~l~~~~~~~~   75 (413)
                      +.++||+|||||+.|+++|+.|+++|++|+|||+++..+  ++|..++++++....         ......+..++...+
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~--GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er  146 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSS--GTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER  146 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCC--CcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence            346999999999999999999999999999999997764  455555554443210         011123344444434


Q ss_pred             HHHHHHhCCeeEEeeceeeeCCC--ChhhH---HHHHHHH-hhCCC-CccccCHHHHHHHcCCcccCCC---CeEEEEec
Q 015088           76 EQAQSEIGYKVYFKAHQFDMGPS--ENKSL---RSVIASC-RKNSV-PHQVLDCRQVLEKYSGRIEIPE---NWVGVATE  145 (413)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  145 (413)
                      ..+.+.... +....+.+.....  ....+   ....+.. ...+. ..++++++++.+++|. +....   ...+.+.+
T Consensus       147 ~~l~~~ap~-l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~-L~~~~~~~~l~ga~~~  224 (627)
T PLN02464        147 KQLIENAPH-LCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPT-LAKKGKDGSLKGTVVY  224 (627)
T ss_pred             HHHHhhChh-hccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCC-CCccccccceeEEEEe
Confidence            333222111 0001111100000  00000   1111111 11222 2478999999999998 55220   24444466


Q ss_pred             CCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhh
Q 015088          146 LGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKR  219 (413)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~  219 (413)
                      .++++||.+++..|.+.++++|++++.+++|+++..  ++ ++..+.|+.   .+++  ++++|.||+|+|+|+..+.++
T Consensus       225 ~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~--~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~  302 (627)
T PLN02464        225 YDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIK--DESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKM  302 (627)
T ss_pred             cCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEE--ecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence            779999999999999999999999999999999987  53 233444332   2333  589999999999999999887


Q ss_pred             hcCCcc-ceeEEEEEEEEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCc
Q 015088          220 ITGLEL-PIQAVETTVCYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPG  296 (413)
Q Consensus       220 ~~g~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (413)
                      +.+... ++.|.+|+++.+.  ..    +.+. ..+.+.  ..++..+|+.|+ +  |.+.+|+++....++..... .+
T Consensus       303 ~g~~~~~~I~p~kG~hlvl~--~~----~~~~-~~~~i~~~~~dgr~~~~~P~-~--g~~liGtTd~~~~~~~~~~~-t~  371 (627)
T PLN02464        303 ADGKAKPMICPSSGVHIVLP--DY----YSPE-GMGLIVPKTKDGRVVFMLPW-L--GRTVAGTTDSKTPITMLPEP-HE  371 (627)
T ss_pred             ccCcCCCceEeeeeEEEecc--cc----cCCC-CceEEecCCCCCCEEEEEec-C--CcEEEecCCCCCCCCCCCCC-CH
Confidence            622333 4999999887653  11    1110 112222  124456899998 3  44455554322111211111 12


Q ss_pred             hhHHHHHHHHHhhcC-CCCCCCCCeeeceeeeeecCCCCeEecCCCCC------CCCCEEEEeCCCCCCCccchHHHHHH
Q 015088          297 LLLDSLKEWIQGRFA-GRVDSNGPVATQLCMYSITPDEDFVIDFLGGE------FGEDVVVAGGFSGHGFKMAPAVGRIL  369 (413)
Q Consensus       297 ~~~~~l~~~~~~~~p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~------~~~~~~~~~G~~~~G~~~a~~~a~~l  369 (413)
                      +.++.|++.++++|| .+... .++..|+|+||.++|..|.++..+..      .+++++..+|  |. +|..+.+|+.+
T Consensus       372 ~ei~~Ll~~a~~~~~~~l~~~-~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~~gli~i~G--Gk-~Tt~R~mAe~~  447 (627)
T PLN02464        372 DEIQFILDAISDYLNVKVRRS-DVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEPDGLVTITG--GK-WTTYRSMAEDA  447 (627)
T ss_pred             HHHHHHHHHHHHhhCCCCChh-hEEEEEEeEEeeccCCCCCcccccCCceEEEecCCCeEEEEC--Ch-HHHHHHHHHHH
Confidence            379999999999998 67653 56789999999999876655544332      1245555553  22 88889999999


Q ss_pred             HHHHhc
Q 015088          370 ADLVLS  375 (413)
Q Consensus       370 a~~i~~  375 (413)
                      .+.+.+
T Consensus       448 ~d~~~~  453 (627)
T PLN02464        448 VDAAIK  453 (627)
T ss_pred             HHHHHH
Confidence            999875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.94  E-value=3.2e-24  Score=200.19  Aligned_cols=344  Identities=19%  Similarity=0.186  Sum_probs=223.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      +..+||+|||||+.|+-+|+.++.+|++|+|+|+++..  .|+|..+.+.++...  .......++.+++..-+.+.+..
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A--sGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A   87 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA--SGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA   87 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc--CcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999999999999987  456667777777542  33333455666655555544443


Q ss_pred             CCeeEEeeceeeeCCC---ChhhHHH-HHHHHhhCCC-----CccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChH
Q 015088           83 GYKVYFKAHQFDMGPS---ENKSLRS-VIASCRKNSV-----PHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPT  153 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (413)
                      +. +..+...+.....   ....+.. +.......|+     ..+.++..+.....|. ++ ++...+.+...++++|+.
T Consensus        88 PH-~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~-l~-~~~l~ga~~y~D~~vdda  164 (532)
T COG0578          88 PH-LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPA-LK-KDGLKGAFRYPDGVVDDA  164 (532)
T ss_pred             cc-ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcc-cc-hhhccceEEEccceechH
Confidence            32 2333333332222   1111211 1111122232     3567777777777887 54 445555666677888999


Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---Cc--EEEcCEEEEcCCCChHHhhhhhcCCc----
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---GE--KFWGKKCVVTAGAWVGKLVKRITGLE----  224 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~--~i~ad~VV~A~G~~s~~l~~~~~g~~----  224 (413)
                      ++.-.....+.++|.+++..++|+++.+  +  ++.+.|...|   |+  +++|+.||+|||+|+.+++... +..    
T Consensus       165 RLv~~~a~~A~~~Ga~il~~~~v~~~~r--e--~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~-~~~~~~~  239 (532)
T COG0578         165 RLVAANARDAAEHGAEILTYTRVESLRR--E--GGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA-GLEQSPH  239 (532)
T ss_pred             HHHHHHHHHHHhcccchhhcceeeeeee--c--CCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh-cccCCCC
Confidence            9999999999999999999999999998  7  3466666433   33  7899999999999999998877 433    


Q ss_pred             cceeEEEEEEEEEEecCCCCCccccCCCCCeE-EEc-CCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088          225 LPIQAVETTVCYWRIKEGNEADYAVGGDFPSF-ASY-GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      ..++|.+|.++++.-       +.+.. .+.+ ... ++..++.+|..+  ..+.+++...++.+|+....+ ++..++|
T Consensus       240 ~~vr~skGsHlVv~~-------~~~~~-~a~~~~~~~d~r~~f~iP~~~--~~liGTTD~~~~~~~~~~~~~-~eEidyl  308 (532)
T COG0578         240 IGVRPSKGSHLVVDK-------KFPIN-QAVINRCRKDGRIVFAIPYEG--KTLIGTTDTDYDGDPEDPRIT-EEEIDYL  308 (532)
T ss_pred             ccceeccceEEEecc-------cCCCC-ceEEeecCCCCceEEEecCCC--CEEeeccccccCCCcccCCCC-HHHHHHH
Confidence            469999999987762       01111 2222 222 445578888764  333333322233334433332 3379999


Q ss_pred             HHHHH-hhcCCCCCCCCCeeeceeeeeecCCCCe---------EecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088          303 KEWIQ-GRFAGRVDSNGPVATQLCMYSITPDEDF---------VIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       303 ~~~~~-~~~p~~~~~~~~~~~~~g~~~~t~d~~p---------~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~  372 (413)
                      ++.++ .+-|.+... .++..|+|+||...|+.+         ++-.+.+.  .+++...|   -=+|.--.+|+.+.+.
T Consensus       309 l~~~~~~~~~~l~~~-dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~--~glltv~G---GKlTTyR~maE~a~d~  382 (532)
T COG0578         309 LDAVNRYLAPPLTRE-DILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAEL--AGLLTVAG---GKLTTYRKMAEDALDA  382 (532)
T ss_pred             HHHHHhhhhccCChh-heeeeeeeeeeccCCCCCchhhccCceEEEecCCC--CCeEEEec---chhHHhHHHHHHHHHH
Confidence            99999 444666643 577899999997664442         22222222  57777765   2466666777777777


Q ss_pred             Hhc
Q 015088          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      +.+
T Consensus       383 v~~  385 (532)
T COG0578         383 VCE  385 (532)
T ss_pred             HHH
Confidence            763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.94  E-value=2.8e-24  Score=208.88  Aligned_cols=322  Identities=16%  Similarity=0.186  Sum_probs=219.8

Q ss_pred             HHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHhCCeeEEeeceeeeCCC
Q 015088           23 AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS   98 (413)
Q Consensus        23 A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (413)
                      |+.|+++|++|+|||+++..  .++|..+++.++...    ........+......|.++...    .+.+.+.+.+...
T Consensus         1 ArdLa~rGl~V~llEk~d~~--~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~----~~~~~g~L~va~~   74 (516)
T TIGR03377         1 MRDLALRGLRCILLEQGDLA--HGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH----CVEDTGGLFITLP   74 (516)
T ss_pred             ChhHHHCCCCEEEEeCCCcc--cccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH----hccCCCceEEecC
Confidence            67899999999999998765  466777777776542    1111222333344455555432    3455666665432


Q ss_pred             --ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceE
Q 015088           99 --ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEV  176 (413)
Q Consensus        99 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V  176 (413)
                        +...+..+...+...|++.+.++++++.+.+|. ++ +....+++.+ ++++||.+++..+.+.+.++|++++++++|
T Consensus        75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~-l~-~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V  151 (516)
T TIGR03377        75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPN-LN-PDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKV  151 (516)
T ss_pred             cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCC-CC-hhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEE
Confidence              233345666667788888999999999999998 54 3445667777 589999999999999999999999999999


Q ss_pred             EEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCC
Q 015088          177 KTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGG  251 (413)
Q Consensus       177 ~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  251 (413)
                      ++|..  ++ +..+.|++   .+|+  +++|+.||+|+|+|+..+.+.. |...++.|.+|+++.++....  ...    
T Consensus       152 ~~i~~--~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p~kG~~lv~~~~~~--~~~----  221 (516)
T TIGR03377       152 TGLIR--EG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFPAKGALLIMNHRIN--NTV----  221 (516)
T ss_pred             EEEEE--EC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc-CCCCceecceEEEEEECCccc--ccc----
Confidence            99987  62 23333443   3342  6999999999999999998876 888999999999998852211  100    


Q ss_pred             CCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC
Q 015088          252 DFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP  331 (413)
Q Consensus       252 ~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                       .+......+. .|++|..   +...+|++.....+++....+ .+..+.|.+.+.+++|.+... .++..|+|+||...
T Consensus       222 -~~~~~~~~~g-~~~~P~~---~~~liGtT~~~~~~~~~~~~~-~~~v~~ll~~~~~~~P~l~~~-~i~~~~aGvRPl~~  294 (516)
T TIGR03377       222 -INRCRKPSDA-DILVPGD---TISIIGTTSERIDDPDDLPVT-QEEVDVLLREGAKLAPMLAQT-RILRAFAGVRPLVA  294 (516)
T ss_pred             -cccccCCCCC-cEEEECC---CeEEEecCCCCCCCCCCCCCC-HHHHHHHHHHHHHhCcccccC-CEEEEEeecccccC
Confidence             1111111122 4667752   444444433222223222222 237889999999999999865 68889999999764


Q ss_pred             CC-----------CeEecC--CCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088          332 DE-----------DFVIDF--LGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS  375 (413)
Q Consensus       332 d~-----------~p~ig~--~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~  375 (413)
                      +.           ..+++.  .+..  +|++.++|  | .++.++.+|+.+++++.+
T Consensus       295 ~~~~~~~~~~sR~~~i~~~~~~~~~--~g~i~i~G--G-kltt~r~~Ae~~~d~~~~  346 (516)
T TIGR03377       295 VDDDPSGRNISRGIVLLDHAERDGL--PGFITITG--G-KLTTYRLMAEWATDVVCK  346 (516)
T ss_pred             CCCCCCccccCCCeEEeecccccCC--CCeEEEec--c-hHHHHHHHHHHHHHHHHH
Confidence            31           245552  2344  78999887  3 399999999999999974

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.93  E-value=2.3e-23  Score=198.07  Aligned_cols=228  Identities=18%  Similarity=0.219  Sum_probs=168.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccCCCCCCCc-ccCCCceeecccC----CCChHHHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFDFLHHRGS-SHGESRTIRATYP----EDYYHPMVLESCLLWEQ   77 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g-~~V~liE~~~~~gg~~~-s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~   77 (413)
                      +.++||+|||||++|+++|++|++. + .+|+||||....+..++ +..+++.++....    .+....++.++.+.+.+
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~  122 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRN  122 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999996 3 69999999865432122 1223333332211    11234455556666766


Q ss_pred             HHHHhC----CeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccC-------CCCeEEEEe
Q 015088           78 AQSEIG----YKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEI-------PENWVGVAT  144 (413)
Q Consensus        78 ~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  144 (413)
                      +..++.    ..++...+.+.+...  +.+.+++.++.++..+.+.++++.+++.+.+|. +..       ++...+++.
T Consensus       123 ~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~-v~~~~~~~~~~e~~~Al~~  201 (497)
T PTZ00383        123 YLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPR-VVLKNNHTLREEPLAALYV  201 (497)
T ss_pred             HHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcc-cccCccccccccceEEEEe
Confidence            665533    234567777776533  334466667777777777899999999999997 421       345678888


Q ss_pred             cCC-ceeChHHHHHHHHHHHHH----CC--CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhh
Q 015088          145 ELG-GVIKPTKAVSMFQTLAIK----NG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLV  217 (413)
Q Consensus       145 ~~~-~~~~~~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~  217 (413)
                      +.+ +.+||..+++.|.+.+++    .|  ++++++++|++|..  .+ ++.+.|.|.+|+ ++||+||+|+|+|+..++
T Consensus       202 p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S~~La  277 (497)
T PTZ00383        202 PNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SN-DSLYKIHTNRGE-IRARFVVVSACGYSLLFA  277 (497)
T ss_pred             CCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cC-CCeEEEEECCCE-EEeCEEEECcChhHHHHH
Confidence            877 689999999999999998    77  78999999999988  62 357888888886 999999999999999999


Q ss_pred             hhhcCC--ccceeEEEEEEEEEE
Q 015088          218 KRITGL--ELPIQAVETTVCYWR  238 (413)
Q Consensus       218 ~~~~g~--~~~~~~~~g~~~~~~  238 (413)
                      +++ |+  ..++.|.+|++....
T Consensus       278 ~~~-Gi~~~~~i~Pv~G~~~~~~  299 (497)
T PTZ00383        278 QKM-GYGLEYSCLPVAGSFYFSG  299 (497)
T ss_pred             HHh-CCCCCCCEEecCceEEEcC
Confidence            877 64  678999999876553

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.93  E-value=3.3e-23  Score=197.80  Aligned_cols=227  Identities=16%  Similarity=0.144  Sum_probs=164.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCccc--CCCceeeccc-----CCC---ChH---------H
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSH--GESRTIRATY-----PED---YYH---------P   66 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~--~~~~~~~~~~-----~~~---~~~---------~   66 (413)
                      +||+|||||++|+++|++|+++  |.+|+|+|+...++ ..+|.  .+++.++...     ...   ...         +
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a-~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~   79 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA-AESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINE   79 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch-hhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHH
Confidence            5999999999999999999997  99999999976543 22332  3444333322     211   111         2


Q ss_pred             HHHHHHHHHHHHHHH--hC--CeeEEeeceeeeCC--CChhhHHHHHHHHhhCCC--Cccc-cCHHHHHHHcCCcccC--
Q 015088           67 MVLESCLLWEQAQSE--IG--YKVYFKAHQFDMGP--SENKSLRSVIASCRKNSV--PHQV-LDCRQVLEKYSGRIEI--  135 (413)
Q Consensus        67 l~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~~~~~~~--  135 (413)
                      ....+.++|..+.+.  ..  ..+..+++.+.+..  .+.+.+++..+.++..++  ..++ ++++++.+.+|. +..  
T Consensus        80 ~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~-l~~~r  158 (483)
T TIGR01320        80 QFQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPL-MAAGR  158 (483)
T ss_pred             HHHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCC-cccCC
Confidence            223567777776664  11  22233577777653  334456777777777776  3454 799999999997 432  


Q ss_pred             --CCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEc
Q 015088          136 --PENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVT  208 (413)
Q Consensus       136 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A  208 (413)
                        +....+++.+.++.+||..+++.|.+.+++.|++++++++|+++..  +++ +.|.+.+   .+|+  +++|++||+|
T Consensus       159 ~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~-~~v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       159 DFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSD-GSWTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             CCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CeEEEEEeeccCCceEEEECCEEEEC
Confidence              2356789999999999999999999999999999999999999987  532 3455542   3342  5899999999


Q ss_pred             CCCChHHhhhhhcCCc----cceeEEEEEEEEEEec
Q 015088          209 AGAWVGKLVKRITGLE----LPIQAVETTVCYWRIK  240 (413)
Q Consensus       209 ~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~~  240 (413)
                      +|+|+..+.+++ |+.    .++.|.+|+++.++.+
T Consensus       236 AG~~s~~La~~~-Gi~~~~~~~i~P~~Gq~l~l~~~  270 (483)
T TIGR01320       236 AGGGALPLLQKS-GIPEVKGFAGFPVSGLFLRCGNP  270 (483)
T ss_pred             CCcchHHHHHHc-CCCcCCCCceeeeeEEEEEeCCH
Confidence            999999998877 664    5889999999887643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=99.93  E-value=6.7e-24  Score=178.77  Aligned_cols=316  Identities=14%  Similarity=0.029  Sum_probs=207.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLW   75 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-------~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~   75 (413)
                      ..+|+|||+|+.|+++|+.+++..       .+|++++-+...  ..++...+|.+++..    +.....++.......|
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e--~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l   80 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE--DTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL   80 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc--ccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence            468999999999999999998853       589999988766  456667777777664    3334556777778888


Q ss_pred             HHHHHH--hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChH
Q 015088           76 EQAQSE--IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPT  153 (413)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (413)
                      ..+.+.  -+..-........+...  +.+.+....+.+.-..++.++.+++. .+|.    .  +..-........++.
T Consensus        81 ~~l~rs~~a~~aGV~l~sg~~ls~~--e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~----~--~~~G~~~Tt~~sE~~  151 (342)
T KOG3923|consen   81 AHLARSEEAGEAGVCLVSGHILSDS--ESLDDQQRSWGDIVYGFRDLTERELL-GFPD----Y--STYGIHFTTYLSEGP  151 (342)
T ss_pred             HHHhccccccccceEEeeeeeeccC--CCchhhhhhHHhhhhhhhcCCHHHhc-CCCC----c--cccceeEEEeeccch
Confidence            777662  22222222222222221  22233334444554556777777765 3443    2  111122223456778


Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEE
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETT  233 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~  233 (413)
                      .++..|.+.+.++|+++. ..+|.+++.  -          .+   -.+|.||+|+|.|+..|...    + .+.|.||+
T Consensus       152 ~ylpyl~k~l~e~Gvef~-~r~v~~l~E--~----------~~---~~~DVivNCtGL~a~~L~gD----d-~~yPiRGq  210 (342)
T KOG3923|consen  152 KYLPYLKKRLTENGVEFV-QRRVESLEE--V----------AR---PEYDVIVNCTGLGAGKLAGD----D-DLYPIRGQ  210 (342)
T ss_pred             hhhHHHHHHHHhcCcEEE-EeeeccHHH--h----------cc---CCCcEEEECCccccccccCC----c-ceeeccce
Confidence            999999999999999998 667877765  2          11   24899999999999877543    2 39999999


Q ss_pred             EEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCC
Q 015088          234 VCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGR  313 (413)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~  313 (413)
                      ++.++.  ++.+.       -.+.  +....|++|-.+  +.+.++.....+++.+..+.    ....|++++.++.|.+
T Consensus       211 Vl~V~A--pWvkh-------f~~~--D~~~ty~iP~~~--~V~lGg~~Q~g~w~~ei~~~----D~~dIl~rc~aL~P~l  273 (342)
T KOG3923|consen  211 VLKVDA--PWVKH-------FIYR--DFSRTYIIPGTE--SVTLGGTKQEGNWNLEITDE----DRRDILERCCALEPSL  273 (342)
T ss_pred             EEEeeC--CceeE-------EEEe--cCCccEEecCCc--eEEEccccccCcccCcCChh----hHHHHHHHHHHhCccc
Confidence            998873  22211       1111  111148888754  55555554434444333221    5778999999999999


Q ss_pred             CCCCCCeeeceeeeeecCCCCe---EecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088          314 VDSNGPVATQLCMYSITPDEDF---VIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       314 ~~~~~~~~~~~g~~~~t~d~~p---~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      ... +++..|+|+||..+--+-   ++..-...  .-+.+..||||+|+++++++|-..+.++.
T Consensus       274 ~~a-~ii~E~vGlRP~Rk~vRlE~e~~~~~~k~--~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~  334 (342)
T KOG3923|consen  274 RHA-EIIREWVGLRPGRKQVRLEAELRTRGGKR--LTVVHNYGHGGNGFTLGWGTALEAAKLVL  334 (342)
T ss_pred             ccc-eehhhhhcccCCCCceeeeeeeecCCCcc--ceeEeeccCCCCceecccchHHHHHHHHH
Confidence            986 899999999997765221   11111111  22589999999999999999999888876

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.92  E-value=3.6e-22  Score=190.74  Aligned_cols=231  Identities=17%  Similarity=0.156  Sum_probs=164.4

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcc-cCCCceeecc-----cCCC---ChHHH-----
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSS-HGESRTIRAT-----YPED---YYHPM-----   67 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s-~~~~~~~~~~-----~~~~---~~~~l-----   67 (413)
                      .+.++||+|||||++|+++|++|+++  |.+|+||||....+..+++ +.+++..+..     +...   ....+     
T Consensus         2 ~~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~   81 (494)
T PRK05257          2 EESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVK   81 (494)
T ss_pred             CCccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHH
Confidence            34578999999999999999999985  7899999998754322222 2344443332     2110   11111     


Q ss_pred             ----HHHHHHHHHHHHHHhCC--e---eEEeeceeeeCCC--ChhhHHHHHHHHhhCCC--Cccc-cCHHHHHHHcCCcc
Q 015088           68 ----VLESCLLWEQAQSEIGY--K---VYFKAHQFDMGPS--ENKSLRSVIASCRKNSV--PHQV-LDCRQVLEKYSGRI  133 (413)
Q Consensus        68 ----~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~--~~~~-~~~~~~~~~~~~~~  133 (413)
                          ...+.++|..+.+. ++  +   ++..++.+.+...  +.+.+++.++.++..++  ..++ ++.+++.+.+|. +
T Consensus        82 ~~~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~-l  159 (494)
T PRK05257         82 INEQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPL-M  159 (494)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcc-c
Confidence                14566777776554 32  1   2346677766533  23445677777777776  3455 488899999997 4


Q ss_pred             c----CCCCeEEEEecCCceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcC
Q 015088          134 E----IPENWVGVATELGGVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGK  203 (413)
Q Consensus       134 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad  203 (413)
                      .    .++...+++.+.++.+|+..+++.|.+.+++.| ++++++++|+++..  +++ +.|.+.+   .+|+  +++|+
T Consensus       160 ~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~d-g~~~v~~~~~~~G~~~~i~A~  236 (494)
T PRK05257        160 MEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDD-GSWTVTVKDLKTGEKRTVRAK  236 (494)
T ss_pred             ccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCC-CCEEEEEEEcCCCceEEEEcC
Confidence            2    234677899999999999999999999999987 89999999999987  532 3355553   3453  58999


Q ss_pred             EEEEcCCCChHHhhhhhcCCc----cceeEEEEEEEEEEec
Q 015088          204 KCVVTAGAWVGKLVKRITGLE----LPIQAVETTVCYWRIK  240 (413)
Q Consensus       204 ~VV~A~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~~  240 (413)
                      +||+|+|+|+..+++.+ |+.    .++.|.+|+++.++.+
T Consensus       237 ~VVvaAGg~s~~L~~~~-Gi~~~~~~~i~PvrGq~l~~~~~  276 (494)
T PRK05257        237 FVFIGAGGGALPLLQKS-GIPEAKGYGGFPVSGQFLVCENP  276 (494)
T ss_pred             EEEECCCcchHHHHHHc-CCCccCCCCeeeeeEEEEEcCCH
Confidence            99999999999998876 665    4799999999888643

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.92  E-value=5.2e-23  Score=194.80  Aligned_cols=229  Identities=17%  Similarity=0.140  Sum_probs=170.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcc--cCCCceeec-----ccCCCC---hHHHH----
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSS--HGESRTIRA-----TYPEDY---YHPMV----   68 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s--~~~~~~~~~-----~~~~~~---~~~l~----   68 (413)
                      +..+||+|||||++|+++|+.|++.  +.+|+|+||.+.++ ..+|  +.+++..+.     .|....   ...+.    
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a-~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~   82 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA-IESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKE   82 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc-hhcCCCccccCcceeeehhhccCCcccCCcccHHHHHH
Confidence            4568999999999999999999998  89999999944443 3344  334444333     333222   22233    


Q ss_pred             -----HHHHHHHHHHHHH--hC--CeeEEeeceeeeC--CCChhhHHHHHHHHhhCCC--Ccccc-CHHHHHHHcCCccc
Q 015088           69 -----LESCLLWEQAQSE--IG--YKVYFKAHQFDMG--PSENKSLRSVIASCRKNSV--PHQVL-DCRQVLEKYSGRIE  134 (413)
Q Consensus        69 -----~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~~~~~~  134 (413)
                           ..+.++|..+.+.  ++  ..++.+.+.+.+.  ..+.+.+++.++.++..++  ..+++ +.+++.+.+|. +.
T Consensus        83 i~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~-l~  161 (497)
T PRK13339         83 INEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPL-MM  161 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCc-cc
Confidence                 5667788776652  22  2345666766665  3345557777888888877  77888 79999999998 44


Q ss_pred             CC----CCeEEEEecCCceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCE
Q 015088          135 IP----ENWVGVATELGGVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKK  204 (413)
Q Consensus       135 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~  204 (413)
                      ..    +...+++.+.++.+|+..+.+.|.+.+++. |++++++++|+++..  .+ ++.|.+.   +.+++  +++||+
T Consensus       162 ~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~-d~~w~v~v~~t~~g~~~~i~Ad~  238 (497)
T PRK13339        162 PGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LS-DGGWEVTVKDRNTGEKREQVADY  238 (497)
T ss_pred             CCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CC-CCCEEEEEEecCCCceEEEEcCE
Confidence            22    446789999999999999999999999754 899999999999987  52 2456664   45552  589999


Q ss_pred             EEEcCCCChHHhhhhhcCCc----cceeEEEEEEEEEEe
Q 015088          205 CVVTAGAWVGKLVKRITGLE----LPIQAVETTVCYWRI  239 (413)
Q Consensus       205 VV~A~G~~s~~l~~~~~g~~----~~~~~~~g~~~~~~~  239 (413)
                      ||+|+|+|+..+++++ |+.    .++.|.+|+++.++.
T Consensus       239 VV~AAGawS~~La~~~-Gi~~~~~~~i~PvkGq~l~l~~  276 (497)
T PRK13339        239 VFIGAGGGAIPLLQKS-GIPESKHLGGFPISGQFLRCTN  276 (497)
T ss_pred             EEECCCcchHHHHHHc-CCCccCCCceEeeeEEEEEecC
Confidence            9999999999999887 664    689999999988874

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=152.79  Aligned_cols=352  Identities=18%  Similarity=0.197  Sum_probs=234.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeeccc---CCCChHHHHHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYHPMVLESCLLWEQAQ   79 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~   79 (413)
                      ..++|+||||||+.|++.|.+|.-+  +.+|.|+|+....+ .-.|..+++.++...   +...-.+++.++.++.-++.
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la-~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc  124 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA-VHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC  124 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc-eeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence            3579999999999999999999987  89999999987764 345556777777542   33445678888888888888


Q ss_pred             HHhCCeeEEeeceeeeCCC--ChhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           80 SEIGYKVYFKAHQFDMGPS--ENKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      .+.++. +...|.+.+...  +...+..+.......+++ .++++..++.+..|.    -....+++.|..|.+|-..+.
T Consensus       125 ~e~~Ip-yKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~----crgvkAl~sPhtGIvD~~~v~  199 (453)
T KOG2665|consen  125 DEKKIP-YKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPY----CRGVKALLSPHTGIVDWGSVT  199 (453)
T ss_pred             hhcCCC-hhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChh----hhhhhhhcCCCcceeehHHHH
Confidence            887776 566777776543  344566777776677765 689999999988886    345567889999999999999


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCC---CeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC--ccceeEEE
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK---GGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL--ELPIQAVE  231 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~---~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~--~~~~~~~~  231 (413)
                      ..+.+.++..|.++.++-++..+..  ....   --+.|....+++++.+.||-|+|..+..+.... |.  +..+.|.+
T Consensus       200 ls~~edF~~~gg~i~~n~~l~g~~~--n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~s-gc~~dPriVpfr  276 (453)
T KOG2665|consen  200 LSFGEDFDFMGGRIYTNFRLQGIAQ--NKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALS-GCELDPRIVPFR  276 (453)
T ss_pred             HHHHHHHHHhcccccccceeccchh--ccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHh-CCCCCCeeeecc
Confidence            9999999999999999999999976  4211   124454445778999999999999887666544 53  23467888


Q ss_pred             EEEEEEEecCC--CCCcccc--CCCCCeEEEcCCCceEecCCCCCCCcEEEecC------------CCCCCCCCCC----
Q 015088          232 TTVCYWRIKEG--NEADYAV--GGDFPSFASYGDPYIYGTPSLEYPGLIKIALH------------GGYPCDPDRR----  291 (413)
Q Consensus       232 g~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~------------~~~~~~~~~~----  291 (413)
                      |.++.++...-  ....+-|  +..+|..      .+..+|+.+  |.++++.+            ......+..+    
T Consensus       277 G~ylll~~ek~h~vk~niyPvpd~RFpfl------GvhftPrm~--g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~  348 (453)
T KOG2665|consen  277 GEYLLLKPEKLHLVKGNIYPVPDPRFPFL------GVHFTPRMD--GSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEY  348 (453)
T ss_pred             chhhhcChHHhccccCceeeCCCCCCccc------cccccCcCC--CceecCCCceEEEEEEeeccccccccchhhheec
Confidence            88776652211  0111111  1122211      122333322  21221110            0001111100    


Q ss_pred             -----------CCCCc-----hhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeec--CCCC----eEecCCCCCCCCCEE
Q 015088          292 -----------PWGPG-----LLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSIT--PDED----FVIDFLGGEFGEDVV  349 (413)
Q Consensus       292 -----------~~~~~-----~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t--~d~~----p~ig~~~~~~~~~~~  349 (413)
                                 ++...     .++..-...+++++|++.+. .+....+|+|+..  .|+.    +++..-.....+++.
T Consensus       349 sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~-di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~ll  427 (453)
T KOG2665|consen  349 SGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDS-DIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLL  427 (453)
T ss_pred             CchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCcccccc-ccccCcccccchhccCCCCCchheEEecCccccccceE
Confidence                       00001     13333447789999999975 5667889999533  3332    233222222357888


Q ss_pred             EEeCCCCCCCccchHHHHHHHHHHh
Q 015088          350 VAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       350 ~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      ..-+.-+.|.+.+.++|+++|+.++
T Consensus       428 h~rnapSPgaTSSlAIa~mIa~k~~  452 (453)
T KOG2665|consen  428 HVRNAPSPGATSSLAIAKMIADKFL  452 (453)
T ss_pred             EecCCCCccchhhHHHHHHHHHHhc
Confidence            8888889999999999999998765

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.79  E-value=3.4e-18  Score=155.56  Aligned_cols=338  Identities=16%  Similarity=0.160  Sum_probs=201.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChH-------HHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYH-------PMVLESCLLW   75 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~-------~l~~~~~~~~   75 (413)
                      ...+||+|||||.+|.-+|+-.+-+|++|.|+|++++..  |+|..+...++...  ......       ++..+++..-
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~S--GTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER  142 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFAS--GTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNER  142 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhcccceeEEEecccccC--CccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            346999999999999999999999999999999999974  45545555554321  111111       2222222222


Q ss_pred             HHHHHHhC-----CeeEEee------ceeeeCCCChhhHHHHHHHHh--hCCCCccccCHHHHHHHcCCcccCCCCeEEE
Q 015088           76 EQAQSEIG-----YKVYFKA------HQFDMGPSENKSLRSVIASCR--KNSVPHQVLDCRQVLEKYSGRIEIPENWVGV  142 (413)
Q Consensus        76 ~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (413)
                      ..+.+...     +++..+.      ..+++.-       +.+++..  +.--...++++++..+.+|. +. .+...+.
T Consensus       143 ~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~-------K~YD~vAG~k~Lk~S~~lSk~~alE~fPm-L~-~~~L~Ga  213 (680)
T KOG0042|consen  143 ANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGL-------KIYDLVAGSKNLKSSYFLSKKEALEIFPM-LR-KDNLKGA  213 (680)
T ss_pred             HHHhhcCccccCCcceeeehhhhhhhhheeecc-------eeeeeeccccccccceeecHHHHHHhCcc-cc-ccCceeE
Confidence            22221111     0111100      0000000       0111111  00112368899999999998 65 5566666


Q ss_pred             EecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhh
Q 015088          143 ATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLV  217 (413)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~  217 (413)
                      +...+|+.|..++.-.+.--+.++|..+....+|.++..  ++++....++.   -.|+  +|+|+.||+|||+++..+.
T Consensus       214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llk--d~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr  291 (680)
T KOG0042|consen  214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLK--DKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIR  291 (680)
T ss_pred             EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhh--CCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHH
Confidence            777778889999998888888999999999999999987  64443333332   2344  7899999999999999887


Q ss_pred             hhhcCCccc--eeEEEEEEEEEEecCCCCCccccCCCCCeEE--EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCC
Q 015088          218 KRITGLELP--IQAVETTVCYWRIKEGNEADYAVGGDFPSFA--SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPW  293 (413)
Q Consensus       218 ~~~~g~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~  293 (413)
                      ++- ....+  +.|..|.++.+  |.    -+.|+ .+-.+.  ..+++.+|+.|+.   |..+.|+++.. ..+...+.
T Consensus       292 ~Md-d~~~~~i~~pSsGvHIVl--P~----yY~P~-~mGlldP~TsDgRViFflPWq---g~TIaGTTD~p-t~v~~~P~  359 (680)
T KOG0042|consen  292 KMD-DEDAKPICVPSSGVHIVL--PG----YYCPE-NMGLLDPKTSDGRVIFFLPWQ---GKTIAGTTDIP-TSVTHSPT  359 (680)
T ss_pred             hhc-ccccCceeccCCceeEEc--cc----ccCCc-ccccccCCCCCCcEEEEeccC---CceeeccCCCC-CCCCCCCC
Confidence            765 33222  44555555433  22    12221 122222  2345668888986   44445554433 22222222


Q ss_pred             CCchhHHHHHHHHHhhcCCCCCC--CCCeeeceeeeeecCCCCe-----------EecCCCCCCCCCEEEEeCCCCCCCc
Q 015088          294 GPGLLLDSLKEWIQGRFAGRVDS--NGPVATQLCMYSITPDEDF-----------VIDFLGGEFGEDVVVAGGFSGHGFK  360 (413)
Q Consensus       294 ~~~~~~~~l~~~~~~~~p~~~~~--~~~~~~~~g~~~~t~d~~p-----------~ig~~~~~~~~~~~~~~G~~~~G~~  360 (413)
                      ..++.++.|++.++.++-.--++  ..+...|+|+||...|..+           +|..-|    .|+...+|   .=++
T Consensus       360 PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaG---GKWT  432 (680)
T KOG0042|consen  360 PTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAG---GKWT  432 (680)
T ss_pred             CCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEec---Ccch
Confidence            23447888999998887543222  2356689999998766532           222222    57777775   2345


Q ss_pred             cchHHHHHHHHHHh
Q 015088          361 MAPAVGRILADLVL  374 (413)
Q Consensus       361 ~a~~~a~~la~~i~  374 (413)
                      .=-..||...+.+.
T Consensus       433 TyR~MAEeTVd~aI  446 (680)
T KOG0042|consen  433 TYRHMAEETVDAAI  446 (680)
T ss_pred             hHHHHHHHHHHHHH
Confidence            55556666665554

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.74  E-value=3.9e-16  Score=148.18  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=54.7

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ  228 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~  228 (413)
                      .+....+.+.|.+.+++.|++++++++|+++..  ++ +..+.+.+ +|.+++|+.||.|+|.++ .+.+.+ ++..+..
T Consensus       104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~--~~-g~v~~v~~-~g~~i~A~~VI~A~G~~s-~l~~~l-gl~~~~~  177 (428)
T PRK10157        104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ--RD-GKVVGVEA-DGDVIEAKTVILADGVNS-ILAEKL-GMAKRVK  177 (428)
T ss_pred             eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE--eC-CEEEEEEc-CCcEEECCEEEEEeCCCH-HHHHHc-CCCCCCC
Confidence            445577888999999999999999999999987  62 23334444 555699999999999876 455554 6554333


Q ss_pred             E
Q 015088          229 A  229 (413)
Q Consensus       229 ~  229 (413)
                      +
T Consensus       178 ~  178 (428)
T PRK10157        178 P  178 (428)
T ss_pred             C
Confidence            3

>PRK06185 hypothetical protein; Provisional

Probab=99.73  E-value=7.4e-16  Score=146.36  Aligned_cols=221  Identities=12%  Similarity=0.040  Sum_probs=122.9

Q ss_pred             eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCe--EEEEcCCCc-EEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE-KFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      +....+.+.|.+.+.+. |++++++++|+++..  +++ ..  +.+.+.+|+ +++||.||.|+|.+|. +.+.+ ++..
T Consensus       105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--~~~-~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~-gi~~  179 (407)
T PRK06185        105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--EGG-RVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALA-GLEV  179 (407)
T ss_pred             eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--eCC-EEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHc-CCCc
Confidence            44467778888877765 899999999999987  632 33  344555664 7999999999999984 54444 7777


Q ss_pred             ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHH
Q 015088          226 PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEW  305 (413)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      +..++.+.+++++++.....   +...+..+  ..+..+.+.|..   +.+.++...    +++......+...+.+.+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~g~~~llP~~---~~~~i~~~~----~~~~~~~~~~~~~~~~~~~  247 (407)
T PRK06185        180 REFGAPMDVLWFRLPREPDD---PESLMGRF--GPGQGLIMIDRG---DYWQCGYVI----PKGGYAALRAAGLEAFRER  247 (407)
T ss_pred             cccCCCceeEEEecCCCCCC---CcccceEe--cCCcEEEEEcCC---CeEEEEEEe----cCCCchhhhhhhHHHHHHH
Confidence            77777777776665431110   00001111  223335566653   223222211    1111100011135667777


Q ss_pred             HHhhcCCCCCCCCCeeecee--e--------eeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh-
Q 015088          306 IQGRFAGRVDSNGPVATQLC--M--------YSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL-  374 (413)
Q Consensus       306 ~~~~~p~~~~~~~~~~~~~g--~--------~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~-  374 (413)
                      +.+.+|.+......+..|..  .        ..+..++..++|..       .+....++|+|+.+|.--|..+++.+. 
T Consensus       248 ~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDA-------Ah~~~P~~GqG~nlgl~Da~~La~~l~~  320 (407)
T PRK06185        248 VAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDA-------AHAMSPVGGVGINLAIQDAVAAANILAE  320 (407)
T ss_pred             HHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEecc-------ccccCcccccchhHHHHHHHHHHHHHHH
Confidence            77777764321011111211  1        12344566666654       345566788999999866655555554 


Q ss_pred             ---cCCCCccccccccccccccC
Q 015088          375 ---SGEAQGVELQHFRISRFKEN  394 (413)
Q Consensus       375 ---~g~~~~~~~~~~~~~R~~~~  394 (413)
                         .++.....++.|.-.|..+.
T Consensus       321 ~~~~~~~~~~~L~~Y~~~R~~~~  343 (407)
T PRK06185        321 PLRRGRVSDRDLAAVQRRREFPT  343 (407)
T ss_pred             HhccCCccHHHHHHHHHHhhhHH
Confidence               33222234667776665553

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.71  E-value=1.5e-15  Score=143.51  Aligned_cols=184  Identities=17%  Similarity=0.219  Sum_probs=106.4

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQS   80 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   80 (413)
                      |. +...+||+|||||++|+++|+.|+++|++|+|||+......... ..   ..+.....+...++ .+.+..|+.+.+
T Consensus         1 ~~-~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~-~~---~~r~~~l~~~~~~~-l~~lGl~~~~~~   74 (392)
T PRK08773          1 MS-RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQAD-QP---DLRVYAFAADNAAL-LDRLGVWPAVRA   74 (392)
T ss_pred             CC-CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccC-CC---CCEEEEecHHHHHH-HHHCCchhhhhH
Confidence            44 34568999999999999999999999999999999865321110 00   00100011111111 222333444332


Q ss_pred             HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .....+ .   .+.+.....             +... .++...        +. ..       ..+..++...+.+.|.
T Consensus        75 ~~~~~~-~---~~~~~~~~~-------------~~~~-~~~~~~--------~~-~~-------~~~~~v~~~~l~~~L~  120 (392)
T PRK08773         75 ARAQPY-R---RMRVWDAGG-------------GGEL-GFDADT--------LG-RE-------QLGWIVENDLLVDRLW  120 (392)
T ss_pred             hhCCcc-c---EEEEEeCCC-------------CceE-Eechhc--------cC-CC-------cCEEEEEhHHHHHHHH
Confidence            211110 0   000000000             0000 000000        00 00       0113456678889999


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEE
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAV  230 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~  230 (413)
                      +.+++.|++++++++|++++.  +  ++.+.+++.+|+++++|.||.|+|.++ .+.+.+ ++..+...+
T Consensus       121 ~~~~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~-g~~~~~~~~  184 (392)
T PRK08773        121 AALHAAGVQLHCPARVVALEQ--D--ADRVRLRLDDGRRLEAALAIAADGAAS-TLRELA-GLPVSRHDY  184 (392)
T ss_pred             HHHHhCCCEEEcCCeEEEEEe--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhh-cCCceEEEe
Confidence            999999999999999999988  6  456778888888899999999999998 455544 666554433

>PRK06834 hypothetical protein; Provisional

Probab=99.67  E-value=2e-14  Score=138.45  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA  229 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~  229 (413)
                      -..+.+.|.+.+++.|++++++++|++++.  +  ++.+.+++.+|+++++|+||.|+|.+|. +-+.+ ++..+-..
T Consensus        99 q~~le~~L~~~l~~~gv~i~~~~~v~~v~~--~--~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~l-gi~~~g~~  170 (488)
T PRK06834         99 QNHIERILAEWVGELGVPIYRGREVTGFAQ--D--DTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAA-GIDFPGWD  170 (488)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhc-CCCCCCCC
Confidence            356778888888888999999999999988  6  4567777777778999999999999983 44433 76655443

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.66  E-value=2.7e-15  Score=133.59  Aligned_cols=164  Identities=21%  Similarity=0.224  Sum_probs=103.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce-eecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .+||+|||||+||+.||..++++|++|+|||+....|---.-.+.+++ +.+...              .+++....+  
T Consensus         3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~--------------~~~~ls~~p--   66 (408)
T COG2081           3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA--------------PDEFLSRNP--   66 (408)
T ss_pred             cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc--------------HHHHHHhCC--
Confidence            689999999999999999999999999999999876422111121211 111111              111111100  


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                         ..+.+....-..-.-..++++.+.+|+++..-+   .-+.||.                 ......++++|.+.+++
T Consensus        67 ---~~~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~---~Gr~Fp~-----------------sdkA~~Iv~~ll~~~~~  123 (408)
T COG2081          67 ---GNGHFLKSALARFTPEDFIDWVEGLGIALKEED---LGRMFPD-----------------SDKASPIVDALLKELEA  123 (408)
T ss_pred             ---CcchHHHHHHHhCCHHHHHHHHHhcCCeeEEcc---CceecCC-----------------ccchHHHHHHHHHHHHH
Confidence               000000000000011345556666666532221   1111221                 01236789999999999


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .||+++++++|.++..  +  +..+.+.+++|++++||.+|+|+|+.|
T Consensus       124 ~gV~i~~~~~v~~v~~--~--~~~f~l~t~~g~~i~~d~lilAtGG~S  167 (408)
T COG2081         124 LGVTIRTRSRVSSVEK--D--DSGFRLDTSSGETVKCDSLILATGGKS  167 (408)
T ss_pred             cCcEEEecceEEeEEe--c--CceEEEEcCCCCEEEccEEEEecCCcC
Confidence            9999999999999998  7  478999999997799999999999755

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.66  E-value=1.2e-14  Score=137.01  Aligned_cols=224  Identities=12%  Similarity=0.035  Sum_probs=115.1

Q ss_pred             eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      .++...+.+.|.+.+.+. |++++++++|+++..  +  ++.+.+.+.+|++++||.||.|+|.+|. +.+.+ ++..+.
T Consensus       101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l-~~~~~~  174 (382)
T TIGR01984       101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIR--N--QDYVRVTLDNGQQLRAKLLIAADGANSK-VRELL-SIPTEE  174 (382)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCChH-HHHHc-CCCCcc
Confidence            356678999999999884 999999999999987  6  4567788888888999999999999874 54544 554443


Q ss_pred             eEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHH
Q 015088          228 QAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQ  307 (413)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  307 (413)
                      .......+...++.....   .  ............+++.|..+... +.+.............+...+...+.+.+.+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (382)
T TIGR01984       175 HDYNQTALIANIRHEQPH---Q--GCAFERFTPHGPLALLPLKDNYR-SSLVWCLPSKQADTIANLPDAEFLAELQQAFG  248 (382)
T ss_pred             cccCCEEEEEEEEecCCC---C--CEEEEeeCCCCCeEECcCCCCCC-EEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            322222222222211110   0  01111112223466667654212 22211110000000001111112333333332


Q ss_pred             hhcCCCCCCCCCeeece----eeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCC---CCc
Q 015088          308 GRFAGRVDSNGPVATQL----CMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGE---AQG  380 (413)
Q Consensus       308 ~~~p~~~~~~~~~~~~~----g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~---~~~  380 (413)
                      ..+..+... .....|.    ....+..++..++|       +-.+...-++|.|+.+|.--|..|++.+....   ...
T Consensus       249 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvG-------DAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~  320 (382)
T TIGR01984       249 WRLGKITQV-GERKTYPLKLRIAETHVHPRVVLIG-------NAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTY  320 (382)
T ss_pred             hhccCeEEc-CCccEeecchhhhhheecCCEEEEe-------ecccccCCccccchhhhHHHHHHHHHHHHHhccCccCH
Confidence            222222111 0111110    01112223344444       33556667889999999999999998886421   112


Q ss_pred             cccccccccccc
Q 015088          381 VELQHFRISRFK  392 (413)
Q Consensus       381 ~~~~~~~~~R~~  392 (413)
                      ..++.|.-.|..
T Consensus       321 ~~l~~Y~~~r~~  332 (382)
T TIGR01984       321 ALLQEYLRRRQF  332 (382)
T ss_pred             HHHHHHHHHHHH
Confidence            346667766643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.65  E-value=1.9e-14  Score=135.84  Aligned_cols=76  Identities=9%  Similarity=0.048  Sum_probs=59.5

Q ss_pred             ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088          148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELP  226 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~  226 (413)
                      ..++...+.+.|.+.+++.| ++++ +++|+++..  +  ++.+.+++.+|++++||.||.|+|.++. +.+.+ +...+
T Consensus       106 ~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~-~~~~~  178 (388)
T PRK07608        106 WIVESSLIERALWAALRFQPNLTWF-PARAQGLEV--D--PDAATLTLADGQVLRADLVVGADGAHSW-VRSQA-GIKAE  178 (388)
T ss_pred             EEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe--c--CCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhc-CCCcc
Confidence            34567888999999998887 9999 999999977  5  4567788888877999999999999985 44444 66555


Q ss_pred             eeEE
Q 015088          227 IQAV  230 (413)
Q Consensus       227 ~~~~  230 (413)
                      ..+.
T Consensus       179 ~~~~  182 (388)
T PRK07608        179 RRPY  182 (388)
T ss_pred             cccc
Confidence            5554

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.65  E-value=3e-14  Score=129.33  Aligned_cols=197  Identities=17%  Similarity=0.156  Sum_probs=105.2

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGEKFWGKKCVVTAGAWVGKLVKRITGLELP  226 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~  226 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+... ++.++++|.||.|+|.++. +.+.+ +....
T Consensus        86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~--~--~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~-~~~~~  159 (295)
T TIGR02032        86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI--H--DDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKL-GLRKE  159 (295)
T ss_pred             EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE--e--CCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhc-CCCCC
Confidence            3466678889999999999999999999999987  6  344444433 3447999999999999873 44444 44321


Q ss_pred             -eeEEEEEEEEEEecCCCCCccccCCCCCeEEEc---CCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088          227 -IQAVETTVCYWRIKEGNEADYAVGGDFPSFASY---GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       227 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                       .....+....+..+..   .+.+ .....+...   .....|..|..+  +.+.++.......    ..   ....+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~P~~~--~~~~v~~~~~~~~----~~---~~~~~~~  226 (295)
T TIGR02032       160 PRELGVAARAEVEMPDE---EVDE-DFVEVYIDRGISPGGYGWVFPKGD--GTANVGVGSRSAE----EG---EDLKKYL  226 (295)
T ss_pred             CcceeeEEEEEEecCCc---ccCc-ceEEEEcCCCcCCCceEEEEeCCC--CeEEEeeeeccCC----CC---CCHHHHH
Confidence             1122222223332211   1111 001111111   124567777644  3233322110110    11   1134444


Q ss_pred             HHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEe-------CCCCCCCccchHHHHHHHHH
Q 015088          303 KEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAG-------GFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~-------G~~~~G~~~a~~~a~~la~~  372 (413)
                      .+++ +.+|.+.+. +....+.+..++.....+..       .+++++.+       -+.|.|+.+|---|.++|+.
T Consensus       227 ~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-------~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~  294 (295)
T TIGR02032       227 KDFL-ARRPELKDA-ETVEVIGAPIPIGRPDDKTV-------RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEV  294 (295)
T ss_pred             HHHH-HhCcccccC-cEEeeeceeeccCCCCCccc-------cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhh
Confidence            4444 456766543 34444555555432222111       13444433       36788999998888888764

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.65  E-value=4.9e-14  Score=132.78  Aligned_cols=155  Identities=25%  Similarity=0.314  Sum_probs=96.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC--C
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG--Y   84 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~   84 (413)
                      ++||+|||||+||++||+.|+++|++|+|+|++...|....+.   +.+...               .++++.....  +
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~---~~~~~~---------------~l~~l~~~~~~~i   64 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG---GGLSPR---------------ALEELIPDFDEEI   64 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc---ceechh---------------hHHHhCCCcchhh
Confidence            6899999999999999999999999999999988875433321   111000               0000000000  0


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEe--cCCceeChHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVAT--ELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~  162 (413)
                      ........                                        +..+.....+..  ..+..++-..+.++|.+.
T Consensus        65 ~~~v~~~~----------------------------------------~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~  104 (396)
T COG0644          65 ERKVTGAR----------------------------------------IYFPGEKVAIEVPVGEGYIVDRAKFDKWLAER  104 (396)
T ss_pred             heeeeeeE----------------------------------------EEecCCceEEecCCCceEEEEhHHhhHHHHHH
Confidence            00000000                                        000000001111  235667778999999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      +++.|++++.+++|+++..  +++ +.+.....++.+++|+.||.|+|..+ .+.+.+ +..
T Consensus       105 A~~aGae~~~~~~~~~~~~--~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~l-g~~  161 (396)
T COG0644         105 AEEAGAELYPGTRVTGVIR--EDD-GVVVGVRAGDDEVRAKVVIDADGVNS-ALARKL-GLK  161 (396)
T ss_pred             HHHcCCEEEeceEEEEEEE--eCC-cEEEEEEcCCEEEEcCEEEECCCcch-HHHHHh-CCC
Confidence            9999999999999999988  632 33333333335699999999999866 455555 554

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.65  E-value=3e-14  Score=134.50  Aligned_cols=71  Identities=13%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             eeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          149 VIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      .++...+.+.|.+.+.+.| ++++++++|+++..  +  ++.+.+.+.+|+++++|.||.|+|.++. +.+.+ +...
T Consensus       102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l-~~~~  173 (385)
T TIGR01988       102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPR--H--SDHVELTLDDGQQLRARLLVGADGANSK-VRQLA-GIPT  173 (385)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--c--CCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHc-CCCc
Confidence            3455788899999998887 99999999999987  6  4567788888888999999999999874 44444 5443

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PLN02697 lycopene epsilon cyclase

Probab=99.65  E-value=9e-14  Score=133.41  Aligned_cols=202  Identities=14%  Similarity=0.129  Sum_probs=112.1

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhc-CCccc
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRIT-GLELP  226 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~-g~~~~  226 (413)
                      +.++...+.+.|.+.+.+.|+++ .+++|+++..  +++ ....+.+.+|.+++|+.||.|+|.++..++.... +...+
T Consensus       187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~--~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~  262 (529)
T PLN02697        187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITE--ASD-GLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVC  262 (529)
T ss_pred             cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEE--cCC-cEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcc
Confidence            45778889999999998899998 4789999987  522 2223445677779999999999999965543110 22345


Q ss_pred             eeEEEEEEEEEEecCCCCCccccCCCCCeEEEc--------------CCCceEecCCCCCCCcEEE-ecCCCCCCCCCCC
Q 015088          227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASY--------------GDPYIYGTPSLEYPGLIKI-ALHGGYPCDPDRR  291 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~y~~p~~~~~~~~~~-~~~~~~~~~~~~~  291 (413)
                      .....|..+.+..++....       ...+...              ...++|+.|..+  +.+.+ ++...  ..|.. 
T Consensus       263 ~Q~a~Gi~ve~~~~~~d~~-------~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~--~~~~VE~T~l~--~~~~l-  330 (529)
T PLN02697        263 VQTAYGVEVEVENNPYDPS-------LMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSS--TRVFFEETCLA--SKDAM-  330 (529)
T ss_pred             cEEEEEEEEEecCCCCCcc-------hheeeccccccccccccccCCCceEEEEeecCC--CeEEEEEeeec--cCCCC-
Confidence            6777777665543221111       1122110              113578888754  22333 22110  01111 


Q ss_pred             CCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecC------CCCeEecCCCCCCCCCEEEEeCCCCCCC----cc
Q 015088          292 PWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITP------DEDFVIDFLGGEFGEDVVVAGGFSGHGF----KM  361 (413)
Q Consensus       292 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~------d~~p~ig~~~~~~~~~~~~~~G~~~~G~----~~  361 (413)
                        ..+...+.|.+++.+.  .+.. .++++.-.|+.|+..      ++...||.-...    +.=+   +|.|+    ..
T Consensus       331 --~~~~l~~~L~~~l~~~--Gi~~-~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AAG~----vhPs---TGy~v~~~l~~  398 (529)
T PLN02697        331 --PFDLLKKRLMSRLETM--GIRI-LKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASM----VHPA---TGYSVVRSLSE  398 (529)
T ss_pred             --CHHHHHHHHHHHHHhC--CCCc-ceEEEEEeeeecCCCCCcccCCCeeEeehhhcC----CCCc---hhhhHHHHHHh
Confidence              1111444555555543  2322 245667778878742      122233322111    2222   23455    78


Q ss_pred             chHHHHHHHHHHhcCC
Q 015088          362 APAVGRILADLVLSGE  377 (413)
Q Consensus       362 a~~~a~~la~~i~~g~  377 (413)
                      ||.+|+.+|+.+..+.
T Consensus       399 A~~~A~~ia~~l~~~~  414 (529)
T PLN02697        399 APKYASVIARILKNVS  414 (529)
T ss_pred             HHHHHHHHHHHhhCCc
Confidence            8889999998887554

>PRK06847 hypothetical protein; Provisional

Probab=99.64  E-value=1.2e-13  Score=129.91  Aligned_cols=63  Identities=25%  Similarity=0.242  Sum_probs=53.9

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..++...+.+.|.+.+.+.|++++++++|++++.  +  ++.+.+.+.+|+++++|.||.|+|.++.
T Consensus       102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQ--D--DDGVTVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE--c--CCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence            3456678889999999888999999999999987  6  4567788888888999999999999884

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.63  E-value=7.5e-15  Score=138.56  Aligned_cols=72  Identities=15%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELP  226 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~  226 (413)
                      .++...+.+.|.+.+.+.+...+++++|++++.  +  ++.+.+++++|+++++|.||.|+|.+|. +.+.+ ++...
T Consensus       107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~~  178 (388)
T PRK07494        107 NIPNWLLNRALEARVAELPNITRFGDEAESVRP--R--EDEVTVTLADGTTLSARLVVGADGRNSP-VREAA-GIGVR  178 (388)
T ss_pred             EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEE--c--CCeEEEEECCCCEEEEeEEEEecCCCch-hHHhc-CCCce
Confidence            355567888888888877533377999999987  6  4567788888888999999999999884 44444 55443

>PRK08244 hypothetical protein; Provisional

Probab=99.63  E-value=1.3e-13  Score=133.98  Aligned_cols=215  Identities=16%  Similarity=0.153  Sum_probs=109.6

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--cCCC-cEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSNG-EKFWGKKCVVTAGAWVGKLVKRITGLELP  226 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g-~~i~ad~VV~A~G~~s~~l~~~~~g~~~~  226 (413)
                      +.-..+.+.|.+.+++.|++++++++|+++..  +  ++.+.+.  ..+| +++++|+||.|+|.+|. +-+.+ ++..+
T Consensus        97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~l-gi~~~  170 (493)
T PRK08244         97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQ--D--GDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQA-GIAFP  170 (493)
T ss_pred             ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--c--CCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhc-CCCcc
Confidence            34456778888888888999999999999987  6  3444443  3356 37999999999999883 33333 54432


Q ss_pred             eeE--EEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCC-CCCCCCCCchhHHHHH
Q 015088          227 IQA--VETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCD-PDRRPWGPGLLLDSLK  303 (413)
Q Consensus       227 ~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  303 (413)
                      -..  .......+......     . .....+. .....+++.|..+  +.+.+......... +.....    ..+++.
T Consensus       171 g~~~~~~~~~~~~~~~~~~-----~-~~~~~~~-~~~g~~~~~P~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~  237 (493)
T PRK08244        171 GTDATFTAMLGDVVLKDPP-----P-SSVLSLC-TREGGVMIVPLSG--GIYRVLIIDPERPQVPKDEPV----TLEELK  237 (493)
T ss_pred             CCCcceEEEEEEEEecCCC-----C-cceeEEE-eCCceEEEEECCC--CeEEEEEEcCCcccccCCCCC----CHHHHH
Confidence            111  12222222221110     0 0011111 2223456666643  33322221111000 111111    345566


Q ss_pred             HHHHhhcCCCCCCCCCeeeceeee--------eecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHH----HHHHH
Q 015088          304 EWIQGRFAGRVDSNGPVATQLCMY--------SITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVG----RILAD  371 (413)
Q Consensus       304 ~~~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a----~~la~  371 (413)
                      +.+.+.++.....  ....|...+        .++.++..++|.-       .+...-++|+|+.++..-|    +.|+.
T Consensus       238 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~gRv~L~GDA-------AH~~~P~~GqG~n~gi~DA~~La~~La~  308 (493)
T PRK08244        238 TSLIRICGTDFGL--NDPVWMSRFGNATRQAERYRSGRIFLAGDA-------AHIHFPAGGQGLNVGLQDAMNLGWKLAA  308 (493)
T ss_pred             HHHHHhhCCCCCc--CCeeEEEecccceeeHhhhccCcEEEeecc-------eeccCCccccccccchhhHHHHHHHHHH
Confidence            6666666532211  011122211        2334445566543       4455566777777776666    55555


Q ss_pred             HHhcCCCCcccccccccccccc
Q 015088          372 LVLSGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       372 ~i~~g~~~~~~~~~~~~~R~~~  393 (413)
                      .+ +|......++.|+-+|...
T Consensus       309 ~l-~g~~~~~lL~~Ye~eR~~~  329 (493)
T PRK08244        309 AI-KGWAPDWLLDSYHAERHPV  329 (493)
T ss_pred             HH-cCCCCchhhhhhHHHHHHH
Confidence            55 3544444577787777543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.63  E-value=7.8e-14  Score=132.35  Aligned_cols=82  Identities=9%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ  228 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~  228 (413)
                      .++...+.+.|.+.+.+.|++++++++|++++.  +  ++.+.|.+.+|++++||.||.|+|.+| .+-+.+ +...+..
T Consensus       108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~l-g~~~~~~  181 (405)
T PRK05714        108 IVENRVVQDALLERLHDSDIGLLANARLEQMRR--S--GDDWLLTLADGRQLRAPLVVAADGANS-AVRRLA-GCATREW  181 (405)
T ss_pred             EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhc-CCCcccc
Confidence            455567778888888888999999999999987  6  456778888888899999999999998 344443 6554444


Q ss_pred             EEEEEEEE
Q 015088          229 AVETTVCY  236 (413)
Q Consensus       229 ~~~g~~~~  236 (413)
                      .+....+.
T Consensus       182 ~~~~~~~~  189 (405)
T PRK05714        182 DYLHHAIV  189 (405)
T ss_pred             cCCceEEE
Confidence            44444433

>PRK07190 hypothetical protein; Provisional

Probab=99.63  E-value=1.2e-13  Score=132.95  Aligned_cols=69  Identities=16%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      ..+.+.|.+.+.+.|++++++++|+++..  +  ++.+.+.+.+|++++|++||.|+|.+| .+-+.+ |+..+-
T Consensus       109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~--~--~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~l-gi~f~g  177 (487)
T PRK07190        109 SYVEKLLDDKLKEAGAAVKRNTSVVNIEL--N--QAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHF-NVPFEI  177 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c--CCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHc-CCCccc
Confidence            45667788888888999999999999988  6  455666667777899999999999976 233333 665543

>PRK06184 hypothetical protein; Provisional

Probab=99.62  E-value=9.1e-14  Score=135.26  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCcEEEcCEEEEcCCCChHHhhhhhcCCccc
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGEKFWGKKCVVTAGAWVGKLVKRITGLELP  226 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~  226 (413)
                      .-..+.+.|.+.+.+.|++++++++|++++.  +  ++.+.+..   .++++++||+||.|+|.+|. +-+.+ ++.+.
T Consensus       107 ~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~l-gi~~~  179 (502)
T PRK06184        107 PQWRTERILRERLAELGHRVEFGCELVGFEQ--D--ADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKAL-GIGFP  179 (502)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCcEEEEEEE--c--CCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhC-CCCcc
Confidence            3356777888888888999999999999987  6  34455544   45568999999999999984 44433 65443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.62  E-value=1.3e-13  Score=130.55  Aligned_cols=75  Identities=23%  Similarity=0.310  Sum_probs=56.6

Q ss_pred             ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088          151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA  229 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~  229 (413)
                      +-..+.+.|.+.+.+ .|++++++++|+++..  +  ++.+.+++++|.++++|.||.|+|.++. +.+.+ +...+..+
T Consensus       110 ~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-~~~~~~~~  183 (395)
T PRK05732        110 ELHDVGQRLFALLDKAPGVTLHCPARVANVER--T--QGSVRVTLDDGETLTGRLLVAADGSHSA-LREAL-GIDWQQHP  183 (395)
T ss_pred             EhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--c--CCeEEEEECCCCEEEeCEEEEecCCChh-hHHhh-CCCcccee
Confidence            334566777777766 4899999999999987  6  4667788888878999999999999984 55554 66655555


Q ss_pred             EE
Q 015088          230 VE  231 (413)
Q Consensus       230 ~~  231 (413)
                      ..
T Consensus       184 ~~  185 (395)
T PRK05732        184 YE  185 (395)
T ss_pred             cC
Confidence            43

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.61  E-value=1e-13  Score=126.10  Aligned_cols=230  Identities=18%  Similarity=0.169  Sum_probs=160.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC-cccCCCceeecccCCCChH-----------------
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG-SSHGESRTIRATYPEDYYH-----------------   65 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~-~s~~~~~~~~~~~~~~~~~-----------------   65 (413)
                      .++||++|||||.|.++++.|++.  .++|.|+||.+..+..+ ..+.+++..+..+..-+|.                 
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In   81 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN   81 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence            479999999999999999999986  68999999988765332 2345666655543322221                 


Q ss_pred             HHHHHHHHHHHHHHHHhCC----eeEEee--ceeeeCCCChhhHHHHHHHHhhCCC--Ccccc-CHHHHHHHcCCccc--
Q 015088           66 PMVLESCLLWEQAQSEIGY----KVYFKA--HQFDMGPSENKSLRSVIASCRKNSV--PHQVL-DCRQVLEKYSGRIE--  134 (413)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~~~~~~~~--  134 (413)
                      +-...+.++|..+.+.--+    .++...  ..+.....+.+-+++.++.++..-+  ..++. +.+++.+..|..+.  
T Consensus        82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR  161 (488)
T PF06039_consen   82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR  161 (488)
T ss_pred             HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence            1223456677776554221    233333  3444555666667888887766422  23444 46677777775332  


Q ss_pred             -CCCCeEEEEecCCceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC-----CCcEEEcCEEEE
Q 015088          135 -IPENWVGVATELGGVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS-----NGEKFWGKKCVV  207 (413)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----~g~~i~ad~VV~  207 (413)
                       .++...+.+...+.-+|-..+.+.|.+.+++. |++++++++|++|.+  .+ ++.|.|.+.     +.++++|+.|++
T Consensus       162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r--~~-dg~W~v~~~~~~~~~~~~v~a~FVfv  238 (488)
T PF06039_consen  162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR--NG-DGRWEVKVKDLKTGEKREVRAKFVFV  238 (488)
T ss_pred             CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE--CC-CCCEEEEEEecCCCCeEEEECCEEEE
Confidence             23444566777788899999999999999888 999999999999998  63 355877652     223799999999


Q ss_pred             cCCCChHHhhhhhcCC----ccceeEEEEEEEEEEe
Q 015088          208 TAGAWVGKLVKRITGL----ELPIQAVETTVCYWRI  239 (413)
Q Consensus       208 A~G~~s~~l~~~~~g~----~~~~~~~~g~~~~~~~  239 (413)
                      .+|+++-.|+.+. |+    .....|+.|+.+..+.
T Consensus       239 GAGG~aL~LLqks-gi~e~~gyggfPVsG~fl~~~n  273 (488)
T PF06039_consen  239 GAGGGALPLLQKS-GIPEGKGYGGFPVSGQFLRCKN  273 (488)
T ss_pred             CCchHhHHHHHHc-CChhhcccCCCcccceEEecCC
Confidence            9999999999887 65    4567889998776653

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.61  E-value=7.1e-14  Score=132.68  Aligned_cols=72  Identities=22%  Similarity=0.258  Sum_probs=59.0

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      ..++...+.+.|.+.+.+.|++++++++|++++.  +  ++.+.+.+.+|+++++|.||.|+|.++. +.+.+ ++..
T Consensus       106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~-g~~~  177 (403)
T PRK07333        106 HMVENRVLINALRKRAEALGIDLREATSVTDFET--R--DEGVTVTLSDGSVLEARLLVAADGARSK-LRELA-GIKT  177 (403)
T ss_pred             EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--c--CCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHc-CCCc
Confidence            3567788999999999989999999999999987  6  4567788888888999999999999875 44444 6543

>PRK10015 oxidoreductase; Provisional

Probab=99.59  E-value=4.7e-13  Score=127.00  Aligned_cols=69  Identities=12%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      .+.-..+.+.|.+.+++.|++++.+++|+++..  ++ +....+.+. +.+++|+.||+|+|..+ .+.+.+ +.
T Consensus       104 ~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~--~~-~~v~~v~~~-~~~i~A~~VI~AdG~~s-~v~~~l-g~  172 (429)
T PRK10015        104 TVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR--EG-NKVTGVQAG-DDILEANVVILADGVNS-MLGRSL-GM  172 (429)
T ss_pred             EeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE--eC-CEEEEEEeC-CeEEECCEEEEccCcch-hhhccc-CC
Confidence            445567888899999999999999999999987  62 233344443 44699999999999865 344444 54

>PRK08013 oxidoreductase; Provisional

Probab=99.59  E-value=3.3e-13  Score=127.67  Aligned_cols=84  Identities=13%  Similarity=0.070  Sum_probs=60.2

Q ss_pred             eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      .++-..+.+.|.+.+.+. |++++++++|++++.  +  ++.+.++..+|++++||.||.|.|.+|. +-+.+ ++..+-
T Consensus       107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~a~lvVgADG~~S~-vR~~~-~~~~~~  180 (400)
T PRK08013        107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--G--ENEAFLTLKDGSMLTARLVVGADGANSW-LRNKA-DIPLTF  180 (400)
T ss_pred             EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeEEEEEcCCCEEEeeEEEEeCCCCcH-HHHHc-CCCccc
Confidence            345567888888888775 899999999999987  6  4567777778888999999999999873 33333 655443


Q ss_pred             eEEEEEEEEEE
Q 015088          228 QAVETTVCYWR  238 (413)
Q Consensus       228 ~~~~g~~~~~~  238 (413)
                      ..+....+...
T Consensus       181 ~~~~~~~~~~~  191 (400)
T PRK08013        181 WDYQHHALVAT  191 (400)
T ss_pred             cccCcEEEEEE
Confidence            33333333333

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.58  E-value=1.9e-13  Score=129.36  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=51.8

Q ss_pred             eeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .++...+.+.|.+.+.+.+ ++++++++|+++..  +  ++.+.+.+.+|+++++|.||.|+|.+|.
T Consensus       105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--D--GDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--C--CCceEEEEcCCCEEecCEEEECCCcChH
Confidence            3566778888888887764 99999999999987  6  4567788888888999999999999985

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.58  E-value=5.6e-13  Score=131.11  Aligned_cols=69  Identities=23%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEE--EEcCCCc-EEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVT--VVTSNGE-KFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~--v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      ..+.+.|.+.+.+. +++++++++|++++.  +  ++.+.  +++.++. ++++|+||.|+|.+|. +-+.+ ++...-
T Consensus       125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~l-g~~~~g  197 (547)
T PRK08132        125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQ--H--DDGVTLTVETPDGPYTLEADWVIACDGARSP-LREML-GLEFEG  197 (547)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--c--CCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHc-CCCCCC
Confidence            45667777777775 799999999999987  6  34444  3444554 6999999999999884 33333 654443

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.57  E-value=2.5e-13  Score=128.33  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      .++...+.+.|.+.+.+. |++++++++|+++..  +  ++.+.|.+.+|++++||.||.|+|.+|. +.+.+ ++.
T Consensus       108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~-~~~  178 (391)
T PRK08020        108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQR--D--DDGWELTLADGEEIQAKLVIGADGANSQ-VRQMA-GIG  178 (391)
T ss_pred             EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--c--CCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHc-CCC
Confidence            355567888888888776 999999999999987  6  4567788878878999999999999984 44433 544

>PRK09126 hypothetical protein; Provisional

Probab=99.56  E-value=6e-13  Score=125.83  Aligned_cols=69  Identities=16%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      ....+.+.|.+.+.+ .|++++++++|++++.  +  ++.+.|.+++|++++||.||.|+|.++. +.+.+ ++..
T Consensus       108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~-g~~~  177 (392)
T PRK09126        108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--D--DDGAQVTLANGRRLTARLLVAADSRFSA-TRRQL-GIGA  177 (392)
T ss_pred             eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--c--CCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhc-CCCc
Confidence            334566666666644 5999999999999987  6  4567788788888999999999999773 33333 5433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.56  E-value=5.1e-13  Score=127.32  Aligned_cols=66  Identities=17%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC--CC-cEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG-EKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g-~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      ..+.+.|.+.+.+. |++++++++|++++.  +  ++.+.|+..  ++ .+++||.||.|+|.+|. +-+.+ +..
T Consensus       121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~adlvIgADG~~S~-vR~~~-~~~  190 (415)
T PRK07364        121 QVLLEALQEFLQSCPNITWLCPAEVVSVEY--Q--QDAATVTLEIEGKQQTLQSKLVVAADGARSP-IRQAA-GIK  190 (415)
T ss_pred             HHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--c--CCeeEEEEccCCcceEEeeeEEEEeCCCCch-hHHHh-CCC
Confidence            45777787777765 799999999999987  6  345555544  23 36999999999999883 33333 543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.56  E-value=1.2e-12  Score=128.45  Aligned_cols=60  Identities=22%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcC--CC--cEEEcCEEEEcCCCChH
Q 015088          151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~VV~A~G~~s~  214 (413)
                      .-..+.+.|.+.+.+. |++++++++|++++.  +  ++++.++..  +|  ++++||+||.|+|.+|.
T Consensus       111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ--D--DDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--c--CCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            3345667787877775 899999999999988  6  345665543  56  37999999999999874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.56  E-value=7.4e-14  Score=130.02  Aligned_cols=157  Identities=21%  Similarity=0.280  Sum_probs=83.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce-eecccCC-CCh-------HHHHHHHHHHHHHH
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT-IRATYPE-DYY-------HPMVLESCLLWEQA   78 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~-~~~~~~~-~~~-------~~l~~~~~~~~~~~   78 (413)
                      |||+|||||++|+.||+.|++.|.+|+|+|++...|-.-...+++++ +.+.... ..+       ..+....+.   + 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~---~-   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALK---R-   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHH---H-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHh---c-
Confidence            79999999999999999999999999999999877422111111111 1110000 000       000000000   0 


Q ss_pred             HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                                            ....+..+++.+.|++...-..   .+.+|.                 .-....++..
T Consensus        77 ----------------------f~~~d~~~ff~~~Gv~~~~~~~---gr~fP~-----------------s~~a~~Vv~~  114 (409)
T PF03486_consen   77 ----------------------FSPEDLIAFFEELGVPTKIEED---GRVFPK-----------------SDKASSVVDA  114 (409)
T ss_dssp             ----------------------S-HHHHHHHHHHTT--EEE-ST---TEEEET-----------------T--HHHHHHH
T ss_pred             ----------------------CCHHHHHHHHHhcCCeEEEcCC---CEECCC-----------------CCcHHHHHHH
Confidence                                  0113455566666665322110   011111                 1134788899


Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      |.+.+++.|++++++++|.+|..  ++ ++.+.|+++++.++.||.||+|+|+.+
T Consensus       115 L~~~l~~~gv~i~~~~~V~~i~~--~~-~~~f~v~~~~~~~~~a~~vILAtGG~S  166 (409)
T PF03486_consen  115 LLEELKRLGVEIHFNTRVKSIEK--KE-DGVFGVKTKNGGEYEADAVILATGGKS  166 (409)
T ss_dssp             HHHHHHHHT-EEE-S--EEEEEE--ET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred             HHHHHHHcCCEEEeCCEeeeeee--cC-CceeEeeccCcccccCCEEEEecCCCC
Confidence            99999999999999999999988  62 355889986666799999999999755

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06126 hypothetical protein; Provisional

Probab=99.55  E-value=9.4e-13  Score=129.59  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=49.7

Q ss_pred             eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      +.-..+.+.|.+.+++. |++++++++|+++..  +  ++.+.+..   .+|+  ++++|+||.|+|.+|. +-+.+ ++
T Consensus       123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~l-gi  196 (545)
T PRK06126        123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ--D--ADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSL-GI  196 (545)
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE--C--CCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhc-CC
Confidence            34456777888887764 899999999999987  6  33444433   3453  6899999999999884 44444 55


Q ss_pred             cc
Q 015088          224 EL  225 (413)
Q Consensus       224 ~~  225 (413)
                      ..
T Consensus       197 ~~  198 (545)
T PRK06126        197 SY  198 (545)
T ss_pred             cc
Confidence            43

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.55  E-value=4.2e-13  Score=126.21  Aligned_cols=221  Identities=17%  Similarity=0.112  Sum_probs=115.3

Q ss_pred             ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcC-CCcEEEcCEEEEcCCCChHHhhhhhcC-Cc
Q 015088          148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGEKFWGKKCVVTAGAWVGKLVKRITG-LE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~~l~~~~~g-~~  224 (413)
                      ..+.-..+.+.|.+.+.+.+ ++++++++|+.++.  +  ++.+.++.+ +|++++||.||-|.|.+|.  .++..+ ..
T Consensus        99 ~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--~--~~~v~v~l~~dG~~~~a~llVgADG~~S~--vR~~~~~~~  172 (387)
T COG0654          99 YVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--D--GDGVTVTLSFDGETLDADLLVGADGANSA--VRRAAGIAE  172 (387)
T ss_pred             EEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--c--CCceEEEEcCCCcEEecCEEEECCCCchH--HHHhcCCCC
Confidence            34455788899999998876 99999999999998  6  345556666 8989999999999999873  333335 22


Q ss_pred             cceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHH
Q 015088          225 LPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKE  304 (413)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  304 (413)
                      ..-..+....+..........     .............+.+.|..+....+.+....  ........+    ..+....
T Consensus       173 ~~~~~y~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~  241 (387)
T COG0654         173 FSGRDYGQTALVANVEPEEPH-----EGRAGERFTHAGPFALLPLPDNRSSVVWSLPP--GPAEDLQGL----SDEEFLR  241 (387)
T ss_pred             ccCCCCCceEEEEEeecCCCC-----CCeEEEEecCCCceEEEecCCCceeEEEECCh--hhHHHHhcC----CHHHHHH
Confidence            222223333333333232110     01111111122235555655322222222110  000011111    3344566


Q ss_pred             HHHhhcCCC--CCCCCCeeeceeee--------eecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088          305 WIQGRFAGR--VDSNGPVATQLCMY--------SITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       305 ~~~~~~p~~--~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      .+.+.+|..  ... .....+.-.+        .+..++.-++|.-.       +...-.+|+|+.++.--+..||+.+.
T Consensus       242 ~l~~~~~~~~~~~~-~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAA-------H~~~P~~gQG~nlgl~Da~~La~~L~  313 (387)
T COG0654         242 ELQRRLGERDPLGR-VTLVSSRSAFPLSLRVAERYRRGRVVLIGDAA-------HAMHPLAGQGANLALEDAAALAEALA  313 (387)
T ss_pred             HHHHhcCcccccce-EEEccccccccccchhhhheecCcEEEEeecc-------ccCCCccccchhhhhhhHHHHHHHHH
Confidence            677777755  211 0000111111        23345566666543       44455567777777777777776665


Q ss_pred             cCCCC---cccccccccccccc
Q 015088          375 SGEAQ---GVELQHFRISRFKE  393 (413)
Q Consensus       375 ~g~~~---~~~~~~~~~~R~~~  393 (413)
                      .....   ...++.|.-.|...
T Consensus       314 ~~~~~~~~~~~L~~Y~~~R~~~  335 (387)
T COG0654         314 AAPRPGADAAALAAYEARRRPR  335 (387)
T ss_pred             HHhhcCccHHHHHHHHHhhhhH
Confidence            43221   33466676666443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.55  E-value=4.6e-13  Score=125.98  Aligned_cols=216  Identities=10%  Similarity=0.037  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEE
Q 015088          153 TKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVE  231 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~  231 (413)
                      ..+...|.+.+.+. |++++++++|++++.  +  ++.+.+++.+|+++++|.||.|+|.+|. +-+.+ ++......+.
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--~--~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~-gi~~~~~~~~  183 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEF--S--AEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLA-GIGITAWDYR  183 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEE--c--CCeEEEEECCCCEEEeeEEEEecCCCch-hHHhc-CCCceeccCC
Confidence            45666777776654 799999999999988  6  4567788888888999999999999883 33333 5443333333


Q ss_pred             EEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcC
Q 015088          232 TTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFA  311 (413)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      ...+.+.+......   ....+..+ ...+... ..|.....+.+.+.... ... ......    ..+.+.+.+.+.+|
T Consensus       184 ~~~~v~~~~~~~~~---~~~~~~~~-~~~g~~~-~~pl~~~~~~~~~~~~~-~~~-~~~~~~----~~~~~~~~l~~~~~  252 (384)
T PRK08849        184 QHCMLINVETEQPQ---QDITWQQF-TPSGPRS-FLPLCGNQGSLVWYDSP-KRI-KQLSAM----NPEQLRSEILRHFP  252 (384)
T ss_pred             CeEEEEEEEcCCCC---CCEEEEEe-CCCCCEE-EeEcCCCceEEEEECCH-HHH-HHHHcC----CHHHHHHHHHHHhh
Confidence            44433333221110   00000011 1111211 13433222222221100 000 000001    12334444555555


Q ss_pred             CCCCCCCCeeeceeeee--------ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc-CCCCccc
Q 015088          312 GRVDSNGPVATQLCMYS--------ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS-GEAQGVE  382 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~-g~~~~~~  382 (413)
                      ....  .+...+...++        ++.++.-++|.       -.+...-+.|+|+.++.--|..|++.+.. +......
T Consensus       253 ~~~~--~~~~~~~~~~~l~~~~~~~~~~grv~LlGD-------AAH~~~P~~GQG~n~al~Da~~L~~~l~~~~~~~~~~  323 (384)
T PRK08849        253 AELG--EIKVLQHGSFPLTRRHAQQYVKNNCVLLGD-------AAHTINPLAGQGVNLGFKDVDVLLAETEKQGVLNDAS  323 (384)
T ss_pred             hhhC--cEEeccceEeeccccccchhccCCEEEEEc-------ccccCCCCccchHhHHHHHHHHHHHHHHhcCCCcHHH
Confidence            3221  11112223322        22233334443       34455667899999999999999998863 3222334


Q ss_pred             cccccccccccC
Q 015088          383 LQHFRISRFKEN  394 (413)
Q Consensus       383 ~~~~~~~R~~~~  394 (413)
                      ++.|.-.|....
T Consensus       324 L~~Ye~~R~~~~  335 (384)
T PRK08849        324 FARYERRRRPDN  335 (384)
T ss_pred             HHHHHHHHhHHH
Confidence            777777775543

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.54  E-value=3.2e-12  Score=120.68  Aligned_cols=198  Identities=10%  Similarity=-0.007  Sum_probs=108.1

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcccee
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ  228 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~  228 (413)
                      .++...+.+.|.+.+.+.|++++ .++|+++..  ++ ++.+.|.+.+|++++|+.||.|+|.++ .+.....+....+.
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~--~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~~~~~~~~~~~~q  155 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEA--DG-VALSTVYCAGGQRIQARLVIDARGFGP-LVQYVRFPLNVGFQ  155 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEe--cC-CceeEEEeCCCCEEEeCEEEECCCCch-hcccccCCCCceEE
Confidence            47778899999999988899997 668888876  52 356778888887799999999999987 22111113334455


Q ss_pred             EEEEEEEEEEecCCCCCccccCCCCCeEEE---c--------CCC--ceEecCCCCCCCcEEEecCCCCCCCCCCCCCCC
Q 015088          229 AVETTVCYWRIKEGNEADYAVGGDFPSFAS---Y--------GDP--YIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGP  295 (413)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~--~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (413)
                      ...|..+.+..++....       .+.+..   .        ...  ++|+.|..+  +...+.... ....+   ....
T Consensus       156 ~~~G~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~--~~~~v~~~~-~~~~~---~~~~  222 (388)
T TIGR01790       156 VAYGVEARLSRPPHGPS-------SMVIMDARVDQLAAPELKGYRPTFLYAMPLGS--TRVFIEETS-LADRP---ALPR  222 (388)
T ss_pred             EEEEEEEEEcCCCCCCC-------ceEEEeccccccccccccCCCCceEEEeecCC--CeEEEEecc-ccCCC---CCCH
Confidence            55666544432221110       111111   0        112  578888754  333333211 11111   1111


Q ss_pred             chhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCC------CCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHH
Q 015088          296 GLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPD------EDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRIL  369 (413)
Q Consensus       296 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d------~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~l  369 (413)
                      +...+.|.+++... + +.. .++.....|+.|+...      +..+||.       .-..+.-.+|.|+.++...|..+
T Consensus       223 ~~~~~~l~~~~~~~-g-~~~-~~i~~~~~~~iP~~~~~~~~~~rv~liGd-------AAg~~~P~tG~Gi~~al~~a~~l  292 (388)
T TIGR01790       223 DRLRQRILARLNAQ-G-WQI-KTIEEEEWGALPVGLPGPFLPQRVAAFGA-------AAGMVHPTTGYSVARALSDAPGL  292 (388)
T ss_pred             HHHHHHHHHHHHHc-C-Cee-eEEEeeeeEEEecccCCCccCCCeeeeec-------hhcCcCCcccccHHHHHHHHHHH
Confidence            11344444444443 2 221 1234444566665322      1112222       22233336788999999999999


Q ss_pred             HHHHh
Q 015088          370 ADLVL  374 (413)
Q Consensus       370 a~~i~  374 (413)
                      |+.+.
T Consensus       293 a~~l~  297 (388)
T TIGR01790       293 AAAIA  297 (388)
T ss_pred             HHHHH
Confidence            98884

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.54  E-value=4.4e-13  Score=125.15  Aligned_cols=194  Identities=18%  Similarity=0.172  Sum_probs=111.3

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      ..++...+.+.+.+.+.+.| .++.+++|++|+.  .  +..+.+.+.+|++++|+.||.|.|..+. .     +.....
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~--~--~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~-----~~~~~~  150 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEE--T--GDGVLVVLADGRTIRARVVVDARGPSSP-K-----ARPLGL  150 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEe--c--CceEEEEECCCCEEEeeEEEECCCcccc-c-----cccccc
Confidence            46788889999999988444 5666899999988  6  4577888899988999999999996543 1     222334


Q ss_pred             eEEEEEEEEEEecCCCCCccccCCCCCeEE---E----cCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHH
Q 015088          228 QAVETTVCYWRIKEGNEADYAVGGDFPSFA---S----YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD  300 (413)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (413)
                      +...|..+.++.+.     +.+  ..+.+.   .    .+..++|+.|.....-++.-+....   .+.   ...+...+
T Consensus       151 Q~f~G~~v~~~~~~-----f~~--~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~---~~~---~~~~~~~~  217 (374)
T PF05834_consen  151 QHFYGWEVETDEPV-----FDP--DTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP---RPA---LPEEELKA  217 (374)
T ss_pred             ceeEEEEEeccCCC-----CCC--CceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC---CCC---CCHHHHHH
Confidence            55566655444221     111  122221   1    1234689988765332222222221   121   11122456


Q ss_pred             HHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCC-eEecCCCCCCCCCEEEEeC-------CCCCCCccchHHHHHHHHH
Q 015088          301 SLKEWIQGRFAGRVDSNGPVATQLCMYSITPDED-FVIDFLGGEFGEDVVVAGG-------FSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       301 ~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~-p~ig~~~~~~~~~~~~~~G-------~~~~G~~~a~~~a~~la~~  372 (413)
                      .|.+++.+  -.+.. .++++.-.|+.|++..+. +...       .++...+.       .+|.++..+--.|..+|+.
T Consensus       218 ~l~~~l~~--~g~~~-~~i~~~E~G~IPm~~~~~~~~~~-------~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~  287 (374)
T PF05834_consen  218 RLRRYLER--LGIDD-YEILEEERGVIPMTTGGFPPRFG-------QRVIRIGTAGGMVKPSTGYSFARIQRQADAIADA  287 (374)
T ss_pred             HHHHHHHH--cCCCc-eeEEEeecceeecccCCCccccC-------CCeeeEEccccCCCCcccHHHHHHHHHHHHHHHH
Confidence            66666666  23333 257778889999954332 2221       22222111       1244566666677888888


Q ss_pred             Hhc
Q 015088          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      +..
T Consensus       288 l~~  290 (374)
T PF05834_consen  288 LAK  290 (374)
T ss_pred             Hhh
Confidence            775

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07045 putative monooxygenase; Reviewed

Probab=99.54  E-value=1.7e-12  Score=122.45  Aligned_cols=61  Identities=18%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             ChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .-..+.+.|.+.+.+ .|++++++++|++++.  ++++..+.|++.+|+++++|.||.|.|.+|
T Consensus       104 ~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        104 PCEQLRRLLLAKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             cHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence            345677778777754 5899999999999987  633334578888888899999999999987

>PLN02463 lycopene beta cyclase

Probab=99.52  E-value=2.1e-12  Score=122.21  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=52.3

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.++...+.+.|.+.+.+.|++++ .++|++|+.  .  ++.+.|++++|++++|+.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~--~--~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVH--E--ESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            456778888999999988999997 679999988  6  4567888888878999999999998763

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.51  E-value=7.4e-12  Score=124.11  Aligned_cols=224  Identities=17%  Similarity=0.147  Sum_probs=110.5

Q ss_pred             eChHHHHHHHHHHHHHCC--CEEEcCceEEEEEEecccC-CCeEEEEcC------CC--cEEEcCEEEEcCCCChHHhhh
Q 015088          150 IKPTKAVSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAV-KGGVTVVTS------NG--EKFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~-~~~~~v~~~------~g--~~i~ad~VV~A~G~~s~~l~~  218 (413)
                      ++-..+.+.|.+.+.+.|  +++++++++++++.  ++. +..+.++..      +|  ++++||+||-|.|+.|. + +
T Consensus       138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~--~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-V-R  213 (634)
T PRK08294        138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV--DEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-V-R  213 (634)
T ss_pred             eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE--CCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-H-H
Confidence            444567788888887776  47888999999987  532 234555442      35  47999999999999873 3 3


Q ss_pred             hhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCe-EEEcCCCceEecCCCCCCC-cEEEecCCCCCCCCCCCCCCCc
Q 015088          219 RITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPS-FASYGDPYIYGTPSLEYPG-LIKIALHGGYPCDPDRRPWGPG  296 (413)
Q Consensus       219 ~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~y~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  296 (413)
                      +..|+.+.-...........+...  ..+.. ..... +.......+.+.|...  + .+.+.... ...+++...+...
T Consensus       214 ~~lgi~~~G~~~~~~~~v~dv~~~--~~~p~-~~~~~~~~~~~~g~~~~~P~~~--g~~~r~~~~~-~~~~~~~~~~~~~  287 (634)
T PRK08294        214 KAIGRELRGDSANHAWGVMDVLAV--TDFPD-IRLKCAIQSASEGSILLIPREG--GYLVRLYVDL-GEVPPDERVAVRN  287 (634)
T ss_pred             HhcCCCccCCcccceEEEEEEEEc--cCCCC-cceEEEEecCCCceEEEEECCC--CeEEEEEEec-CcCCCcccccccc
Confidence            333654443322222222221110  01110 01111 1122233456666643  3 23322211 0111111111111


Q ss_pred             hhHHHHHHHHHhhcCC-CCCCCCCeeeceeeee--------ec----------CCCCeEecCCCCCCCCCEEEEeCCCCC
Q 015088          297 LLLDSLKEWIQGRFAG-RVDSNGPVATQLCMYS--------IT----------PDEDFVIDFLGGEFGEDVVVAGGFSGH  357 (413)
Q Consensus       297 ~~~~~l~~~~~~~~p~-~~~~~~~~~~~~g~~~--------~t----------~d~~p~ig~~~~~~~~~~~~~~G~~~~  357 (413)
                      ...+.+.+.+.+.++. ..+. ..+ .|...+.        +.          .++..++|..       .+..+-++|+
T Consensus       288 ~t~e~l~~~~~~~~~p~~~~~-~~v-~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDA-------AH~hsP~~GQ  358 (634)
T PRK08294        288 TTVEEVIAKAQRILHPYTLDV-KEV-AWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDA-------CHTHSAKAGQ  358 (634)
T ss_pred             CCHHHHHHHHHHhcCCCCCce-eEE-eEEecccccceehhhcccccccccccccCCEEEEecC-------ccCCCCcccc
Confidence            1466777888887653 2221 122 2333322        11          1233344433       2333445666


Q ss_pred             CCccch----HHHHHHHHHHhcCCCCcccccccccccccc
Q 015088          358 GFKMAP----AVGRILADLVLSGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       358 G~~~a~----~~a~~la~~i~~g~~~~~~~~~~~~~R~~~  393 (413)
                      |+.++.    -+|+.|+..+. |...+..++.|.-+|...
T Consensus       359 GmN~giqDA~nLawkLa~vl~-g~a~~~lL~tYe~ERrp~  397 (634)
T PRK08294        359 GMNVSMQDGFNLGWKLAAVLS-GRSPPELLHTYSAERQAI  397 (634)
T ss_pred             chhhHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHH
Confidence            666655    45556776664 554455677787777543

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.50  E-value=2.4e-11  Score=118.52  Aligned_cols=67  Identities=27%  Similarity=0.270  Sum_probs=53.9

Q ss_pred             EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.+.+.+|.   ..+.+.|.+.+++.|++|+++++|++|..  ++ +..+.|++.+|++++||.||+|++...
T Consensus       210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIET--EG-GRATAVHLADGERLDADAVVSNADLHH  276 (502)
T ss_pred             eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEe--eC-CEEEEEEECCCCEEECCEEEECCcHHH
Confidence            344444443   67889999999999999999999999987  62 355788888888899999999999743

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.50  E-value=1.1e-12  Score=115.26  Aligned_cols=145  Identities=21%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|++|++.|++|+|+|+....++..+..   +.+.   .     ...                 
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~g---g~~~---~-----~~~-----------------   75 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGG---GMLF---N-----KIV-----------------   75 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccC---cccc---c-----ccc-----------------
Confidence            36899999999999999999999999999999987764321110   1000   0     000                 


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                               +    .   ......+...++++...                       ......+++..+...|.+.+++
T Consensus        76 ---------v----~---~~~~~~l~~~gv~~~~~-----------------------~~g~~~vd~~~l~~~L~~~A~~  116 (257)
T PRK04176         76 ---------V----Q---EEADEILDEFGIRYKEV-----------------------EDGLYVADSVEAAAKLAAAAID  116 (257)
T ss_pred             ---------c----h---HHHHHHHHHCCCCceee-----------------------cCcceeccHHHHHHHHHHHHHH
Confidence                     0    0   01122233344332110                       0011245778899999999999


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcC-----------CCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-----------NGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----------~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .|++++++++|.++..  ++++....+.+.           +..+++|+.||+|+|.++. +.+.+
T Consensus       117 ~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~-v~~~l  179 (257)
T PRK04176        117 AGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE-VVSVL  179 (257)
T ss_pred             cCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH-HHHHH
Confidence            9999999999999986  533233333221           1236999999999999884 44333

>PRK06996 hypothetical protein; Provisional

Probab=99.50  E-value=1.5e-12  Score=123.02  Aligned_cols=86  Identities=12%  Similarity=0.073  Sum_probs=59.6

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      .++-..+.+.|.+.+.+.|+++++++++++++.  +  ...+.+...++   ++++||.||.|+|..+..+.+.+ +...
T Consensus       111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~--~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~-~~~~  185 (398)
T PRK06996        111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--D--ADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADA-GDSA  185 (398)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--c--CCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHc-CCCc
Confidence            455578889999999999999999999999977  5  46677776644   47999999999997433333443 5444


Q ss_pred             ceeEEEEEEEEEEe
Q 015088          226 PIQAVETTVCYWRI  239 (413)
Q Consensus       226 ~~~~~~g~~~~~~~  239 (413)
                      +...+....++..+
T Consensus       186 ~~~~~~~~~~~~~v  199 (398)
T PRK06996        186 RRRDYGQTAIVGTV  199 (398)
T ss_pred             eeeecCCeEEEEEE
Confidence            43333333333333

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.49  E-value=4.1e-13  Score=125.27  Aligned_cols=73  Identities=22%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      .++-..+.+.|.+.+++.|++++++++|+++..  ++++..+.+... +|+  +++||.||.|.|.+|. +.+.+ +...
T Consensus       107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~--d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l-~~~~  182 (356)
T PF01494_consen  107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQ--DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQL-GIDR  182 (356)
T ss_dssp             EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE--ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHT-TGGE
T ss_pred             hhhHHHHHHhhhhhhhhhhhhheeeeecccccc--cccccccccccccCCceeEEEEeeeecccCcccc-hhhhc-cccc
Confidence            345567889999999999999999999999987  632222233332 343  6899999999999883 44444 5443

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.49  E-value=6.3e-12  Score=119.24  Aligned_cols=74  Identities=14%  Similarity=0.072  Sum_probs=54.6

Q ss_pred             ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeE
Q 015088          151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA  229 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~  229 (413)
                      .-..+.+.|.+.+.+. |++++++++|++++.  +  ++.+.|.+.+|++++||.||.|.|.+|. +-+.+ ++..+...
T Consensus       109 ~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~-~~~~~~~~  182 (405)
T PRK08850        109 ENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--G--ESEAWLTLDNGQALTAKLVVGADGANSW-LRRQM-DIPLTHWD  182 (405)
T ss_pred             EHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--e--CCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHc-CCCeeEEe
Confidence            3345667777777664 799999999999987  6  4567788888888999999999999873 33333 55544433


Q ss_pred             E
Q 015088          230 V  230 (413)
Q Consensus       230 ~  230 (413)
                      +
T Consensus       183 ~  183 (405)
T PRK08850        183 Y  183 (405)
T ss_pred             e
Confidence            3

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.49  E-value=3.2e-13  Score=130.97  Aligned_cols=186  Identities=18%  Similarity=0.145  Sum_probs=102.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHH---HHHHHHHHHHHHHHHh
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP---MVLESCLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~   82 (413)
                      .++||||||+|++|++||+.+++.|.+|+||||....++...  ...+.+.....  ....   .......+++++.+..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~--~s~Gg~~~~~~--~~~~~~g~~d~~~~~~~~~~~~~  135 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM--KASSGMNASET--KFQKAQGIADSNDKFYEETLKGG  135 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc--ccCCccccCCh--HHHHhcCCCCCHHHHHHHHHHhc
Confidence            468999999999999999999999999999999987754321  11122111000  0000   0000112222222110


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ...  .....+...   .+......+++.+.|+++....      ..+.     ......+.+..+......+...|.+.
T Consensus       136 ~~~--~d~~l~~~~---~~~s~~~i~wl~~~Gv~~~~~~------~~~g-----~~~~r~~~p~~g~~~g~~l~~~L~~~  199 (506)
T PRK06481        136 GGT--NDKALLRYF---VDNSASAIDWLDSMGIKLDNLT------ITGG-----MSEKRTHRPHDGSAVGGYLVDGLLKN  199 (506)
T ss_pred             CCC--CCHHHHHHH---HhccHHHHHHHHHcCceEeecc------cCCC-----CCCCceeccCCCCCChHHHHHHHHHH
Confidence            000  000000000   0011234556666666543211      0011     00111122333334456788889999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +++.|++++++++|++|..  ++ +..  +.+...+++  ++.++.||+|+|++..
T Consensus       200 ~~~~gv~i~~~t~v~~l~~--~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        200 VQERKIPLFVNADVTKITE--KD-GKVTGVKVKINGKETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHcCCeEEeCCeeEEEEe--cC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence            9999999999999999987  63 233  444444443  6899999999998764

>PRK07588 hypothetical protein; Provisional

Probab=99.48  E-value=1.3e-11  Score=116.71  Aligned_cols=58  Identities=12%  Similarity=-0.021  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      -..+.+.|.+.+. .|++++++++|++++.  +  ++.+.|.+++|+++++|.||.|.|.+|.
T Consensus       102 r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        102 RGDLAAAIYTAID-GQVETIFDDSIATIDE--H--RDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             HHHHHHHHHHhhh-cCeEEEeCCEEeEEEE--C--CCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            3556666666543 4799999999999988  6  4678888889988999999999999873

>PRK05868 hypothetical protein; Validated

Probab=99.47  E-value=5.9e-11  Score=110.94  Aligned_cols=57  Identities=11%  Similarity=0.004  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.|.+. ...|++++++++|++++.  +  ++.+.|...+|+++++|.||.|.|.+|.
T Consensus       105 ~~L~~~l~~~-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        105 DDLVELLYGA-TQPSVEYLFDDSISTLQD--D--GDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             HHHHHHHHHh-ccCCcEEEeCCEEEEEEe--c--CCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            4455555432 346899999999999987  6  4678888888888999999999999883

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.47  E-value=8.3e-12  Score=117.62  Aligned_cols=69  Identities=23%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC------CC--cEEEcCEEEEcCCCChHHhhhhh
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS------NG--EKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g--~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .++...+.+.|.+.+.+.|++++. +.|+++..  +  ++.+.+...      +|  .+++|+.||.|+|.+|. +.+.+
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~l  161 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIH-GLFLKLER--D--RDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKEL  161 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEE--c--CCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHc
Confidence            467778889999999999999975 56999877  6  345555443      22  36999999999999873 44444


Q ss_pred             cCCc
Q 015088          221 TGLE  224 (413)
Q Consensus       221 ~g~~  224 (413)
                       +..
T Consensus       162 -g~~  164 (388)
T TIGR02023       162 -GLP  164 (388)
T ss_pred             -CCC
Confidence             543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=99.47  E-value=2.5e-11  Score=112.64  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .++...+.+.|.+. ...|+++++++.|+++..  .  ++++.+.. .+|+  +++||.||.|+|..|.
T Consensus        95 ~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445         95 NIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWR--E--DDGYHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEE--c--CCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            45667777777764 467899999999999987  6  35566664 4564  6899999999999873

>PRK06753 hypothetical protein; Provisional

Probab=99.47  E-value=4.9e-12  Score=118.81  Aligned_cols=59  Identities=14%  Similarity=0.204  Sum_probs=46.5

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++-..+.+.|.+.+.  +.+++++++|++++.  +  ++.+.+++++|+++++|.||.|.|.+|.
T Consensus        95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIEN--E--TDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             ccHHHHHHHHHHhCC--CceEEECCEEEEEEe--c--CCcEEEEECCCCEEecCEEEECCCcchH
Confidence            444566666666543  468999999999987  6  4678888888888999999999999873

>PRK07538 hypothetical protein; Provisional

Probab=99.46  E-value=2.2e-11  Score=115.84  Aligned_cols=62  Identities=16%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             eeChHHHHHHHHHHHHH-CC-CEEEcCceEEEEEEecccCCCeEEEEcCC---C--cEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIK-NG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSN---G--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~VV~A~G~~s~  214 (413)
                      .++-..+.+.|.+.+.+ .| .+++++++|+++..  ++  +.+.+...+   |  ++++||.||.|.|.+|.
T Consensus        98 ~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--~~--~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~  166 (413)
T PRK07538         98 SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--DA--DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA  166 (413)
T ss_pred             EEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cC--CceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence            35667788888888765 46 46999999999987  52  323333322   2  37999999999999884

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.46  E-value=1.1e-12  Score=126.72  Aligned_cols=183  Identities=17%  Similarity=0.132  Sum_probs=99.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC--CCCCCcccCCCceeecccCCCChHHHH-HHHHHHHHHHHHHh
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF--LHHRGSSHGESRTIRATYPEDYYHPMV-LESCLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~--~gg~~~s~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~   82 (413)
                      .++||||||+|++|+++|+.|+++|.+|+||||...  .|+  ++....+ +............. .....++..+.+..
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG--~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGG--NSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVT   79 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCc--ccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhh
Confidence            468999999999999999999999999999999874  332  2222222 21111110000000 01123344443332


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      +.......... +    ........+++.+.|+++.......        ......  ..+...    ....++..|.+.
T Consensus        80 ~~~~~~~~~~~-~----~~~s~~~~~wl~~~Gv~~~~~~~~~--------~~~~~~--~~~~~g----~g~~l~~~l~~~  140 (466)
T PRK08274         80 GGRTDEALARL-L----IRESSDCRDWMRKHGVRFQPPLSGA--------LHVART--NAFFWG----GGKALVNALYRS  140 (466)
T ss_pred             CCCCCHHHHHH-H----HHcCHHHHHHHHhCCceEeecCCCc--------cccCCC--CeeecC----CHHHHHHHHHHH
Confidence            21000000000 0    0011234555666676543221100        000000  001111    146788889999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEc--CCCc--EEEcCEEEEcCCCCh
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~--~i~ad~VV~A~G~~s  213 (413)
                      +++.|++++++++|++|..  ++ +..+.|.+  .+++  .++++.||+|+|++.
T Consensus       141 ~~~~gv~i~~~t~v~~l~~--~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        141 AERLGVEIRYDAPVTALEL--DD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHCCCEEEcCCEEEEEEe--cC-CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            9999999999999999987  63 34444443  3332  689999999999865

>PRK07233 hypothetical protein; Provisional

Probab=99.45  E-value=1.4e-10  Score=111.33  Aligned_cols=56  Identities=25%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      ..+.+.|.+.+++.|++|+++++|++|+.  +  ++.+.+.+.+++++++|.||+|+...
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~--~--~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVI--D--GGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEE--c--CCceEEEEeCCceEECCEEEECCCHH
Confidence            67889999999999999999999999988  6  34444444556679999999999863

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.44  E-value=1.4e-12  Score=125.54  Aligned_cols=65  Identities=32%  Similarity=0.419  Sum_probs=54.4

Q ss_pred             EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088          141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA  211 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~  211 (413)
                      +++.+.+|+   ..+.++|.+.+++.|++|+++++|++|..  +++ .++.+.+.+|+.+++|.||.+...
T Consensus       215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v--~~g-~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILV--EGG-KGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEE--eCC-cceEEeccccceeccceeEecCch
Confidence            344555554   78999999999999999999999999998  733 578888888866899999999987

>PRK07121 hypothetical protein; Validated

Probab=99.44  E-value=1.2e-12  Score=126.91  Aligned_cols=199  Identities=17%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHH--HHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP--MVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~   83 (413)
                      ..+||||||+|.+|++||++++++|.+|+||||....++.  +....+.+...........  ........++.+.+..+
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~--s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~   96 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA--TALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVG   96 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc--ccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999876543  2222233221100000000  00001112222222111


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCc---ccC-------------CCCeEEEEecCC
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGR---IEI-------------PENWVGVATELG  147 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~~~~  147 (413)
                      ...  ....+   ..-.+...+.++++.++|+++......+. ..+|..   ...             ............
T Consensus        97 ~~~--d~~l~---~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~-~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  170 (492)
T PRK07121         97 PGV--DEEKL---RRYCEGSVEHFDWLEGLGVPFERSFFPEK-TSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGP  170 (492)
T ss_pred             CCC--CHHHH---HHHHHccHHHHHHHHHcCcEEEeccCCCc-ccCCCCCcccccchhhcchhhhhccCCcccceecCCC
Confidence            000  00000   00000112344555666665432100000 000000   000             000000111111


Q ss_pred             cee-ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEc-CEEEEcCCCChH
Q 015088          148 GVI-KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~a-d~VV~A~G~~s~  214 (413)
                      +.. ....+.+.|.+.+++.|++|+++++|++|..  ++++..+.|... +++  .+.| +.||+|+|+++.
T Consensus       171 ~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        171 GDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIV--DDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             CCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--CCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence            111 3567888999999999999999999999987  633344444432 232  5889 999999998763

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.43  E-value=9.4e-11  Score=111.60  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCC-------C--cEEEcCEEEEcCCCChHHhhh
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSN-------G--EKFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~-------g--~~i~ad~VV~A~G~~s~~l~~  218 (413)
                      .++-..+-+.|.+.+.+.|++++.. .++++..  .+ +++.+.|+..+       |  .+++||.||.|+|..| .+.+
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr  203 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDV--PKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAK  203 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEe--ccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHH
Confidence            4677888899999999999999864 6778764  32 12344444321       3  3799999999999987 4444


Q ss_pred             hhcCC
Q 015088          219 RITGL  223 (413)
Q Consensus       219 ~~~g~  223 (413)
                      .+ +.
T Consensus       204 ~l-g~  207 (450)
T PLN00093        204 DI-DA  207 (450)
T ss_pred             Hh-CC
Confidence            44 44

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.42  E-value=3.9e-11  Score=112.47  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             ceeChHHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          148 GVIKPTKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.-..+.+.|.+.+.+.+ ++++++++|+++..  +  ++.+.+.+.++ +++||.||.|.|.+|.
T Consensus        99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--~--~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617         99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--H--NDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--c--CCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            34555788889998888874 89999999999987  6  45677777776 6999999999999884

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.41  E-value=1.4e-11  Score=107.81  Aligned_cols=139  Identities=22%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||||++|+++|+.|+++|++|+||||+...|+..+  .. +...+.        +                  
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~g-g~~~~~--------~------------------   70 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GG-GMLFSK--------I------------------   70 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CC-Ccceec--------c------------------
Confidence            468999999999999999999999999999999987653211  11 100000        0                  


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                              .+ .      ....+.+...+++++..               ..   +.     ...+...+.+.|.+.+.+
T Consensus        71 --------~~-~------~~~~~~l~~~gi~~~~~---------------~~---g~-----~~~~~~el~~~L~~~a~e  112 (254)
T TIGR00292        71 --------VV-E------KPAHEILDEFGIRYEDE---------------GD---GY-----VVADSAEFISTLASKALQ  112 (254)
T ss_pred             --------cc-c------chHHHHHHHCCCCeeec---------------cC---ce-----EEeeHHHHHHHHHHHHHH
Confidence                    00 0      01111223333331100               00   00     123456788889999999


Q ss_pred             CCCEEEcCceEEEEEEecccCC-CeEEEEcC-----------CCcEEEcCEEEEcCCCCh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVK-GGVTVVTS-----------NGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~-----------~g~~i~ad~VV~A~G~~s  213 (413)
                      .|+++++++.|.++..  +++. ....|.+.           +..+++|+.||.|||..+
T Consensus       113 ~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       113 AGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             cCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            9999999999999987  5332 23344332           123789999999999765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.40  E-value=2.3e-12  Score=122.87  Aligned_cols=193  Identities=20%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      ||+|||+|++|++||+.++++|.+|+||||....++  ++....+.+........ ...........+.++.+.......
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg--~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG--SSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLND   78 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS--GGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc--ccccccCceeeecccccccccccccccccceeeecccccccc
Confidence            899999999999999999999999999999987654  33222333332211100 000000112222233222211100


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHH-HHHHcCCcccCCCCeEEEE-ecC---CceeChHHHHHHHHHH
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ-VLEKYSGRIEIPENWVGVA-TEL---GGVIKPTKAVSMFQTL  162 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~l~~~  162 (413)
                        ...+.   .-.+...+..+++.+.++++..-.... ....++. .  ........ ...   ........+...|.+.
T Consensus        79 --~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~-~--~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  150 (417)
T PF00890_consen   79 --PDLVR---AFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGG-H--SPRWRSPPGNPDPPFGGLGGGKALIEALAKA  150 (417)
T ss_dssp             --HHHHH---HHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETT-E--SSTEEEEESSTTSSSHCCCHHHHHHHHHHHH
T ss_pred             --cchhh---hhhhcccceehhhhhhcccccccccccccccccCC-c--cccceeeeccccccccccccHHHHHHHHHHH
Confidence              00000   001122345666666666543310000 0000000 0  00101111 111   0122447788999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +++.|++|+++++|++|..  +++ .++.+..   .+|+  ++.|+.||+|||++..
T Consensus       151 ~~~~gv~i~~~~~~~~Li~--e~g-~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  151 AEEAGVDIRFNTRVTDLIT--EDG-RVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHTTEEEEESEEEEEEEE--ETT-EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HhhcCeeeeccceeeeEEE--eCC-ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            9999999999999999998  743 4444432   3555  6889999999999986

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02730 carot_isom carotene isomerase

Probab=99.40  E-value=1e-11  Score=120.66  Aligned_cols=68  Identities=25%  Similarity=0.387  Sum_probs=57.0

Q ss_pred             EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +++.+.+|.   ..+++.|.+.++++|++|+++++|++|..  ++ +..+.|++.+|++++||.||+|+|.|..
T Consensus       220 g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~--~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~  287 (493)
T TIGR02730       220 GINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIIL--EN-GKAVGVKLADGEKIYAKRIVSNATRWDT  287 (493)
T ss_pred             eEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEe--cC-CcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence            555566665   57899999999999999999999999987  63 4677888888888999999999998753

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=2.7e-11  Score=118.67  Aligned_cols=191  Identities=15%  Similarity=0.154  Sum_probs=99.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQ   79 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~   79 (413)
                      |...+..+||+|||+|.||++||+.+ +.|.+|+||||.....+ +++....+.+..... ......       .+..+.
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~g-G~s~~a~gg~~~~~~~~d~~~~-------~~~d~~   71 (543)
T PRK06263          1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKS-GCTVMAEGGYNAVLNPEDSFEK-------HFEDTM   71 (543)
T ss_pred             CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCC-ccccccCceEEEeCCCCCCHHH-------HHHHHH
Confidence            44445678999999999999999999 99999999999865222 222222222221111 111111       111111


Q ss_pred             HHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      ......  .+ ..+  ...-.+.....++++..+|+++..-....+. ..+..    .......+..   -.....+...
T Consensus        72 ~~~~~~--~d-~~l--v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g----~~~~r~~~~~---~~~G~~i~~~  139 (543)
T PRK06263         72 KGGAYL--ND-PKL--VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGG----QSFNRTCYAG---DRTGHEMMMG  139 (543)
T ss_pred             HHhcCC--CC-HHH--HHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCC----eEcCeEEECC---CCCHHHHHHH
Confidence            110000  00 000  0000011134455666677664321100000 00011    0000111111   0123567788


Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      |.+.+++.|+++++++.|+++..  ++++..+.+.  . .+|+  .+.|+.||+|||++..
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~--~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIV--DENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEE--eCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            88888889999999999999987  6332244333  2 4564  6899999999999763

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.39  E-value=5.4e-11  Score=113.78  Aligned_cols=86  Identities=8%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             eeChHHHHHHHHHHHHHCC---CEEEcCceEEEEEEecc----c-CCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          149 VIKPTKAVSMFQTLAIKNG---AVLRDNMEVKTVLKVKD----A-VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~~~----~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .++-..+.+.|.+.+.+.+   ++++++++|++++.  .    + ++..+.|++.+|++++||.||.|.|.+|. + ++.
T Consensus       113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~--~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-v-R~~  188 (437)
T TIGR01989       113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTI--PSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-V-RKA  188 (437)
T ss_pred             EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEe--ccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-h-HHH
Confidence            3455677788888887765   89999999999974  3    1 13567888888989999999999999883 3 333


Q ss_pred             cCCccceeEEEEEEEEEE
Q 015088          221 TGLELPIQAVETTVCYWR  238 (413)
Q Consensus       221 ~g~~~~~~~~~g~~~~~~  238 (413)
                      .++...-..+....++..
T Consensus       189 ~gi~~~g~~y~q~~~v~~  206 (437)
T TIGR01989       189 ANIDTTGWNYNQHAVVAT  206 (437)
T ss_pred             cCCCccceeeccEEEEEE
Confidence            366655555554444443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1.3e-11  Score=100.73  Aligned_cols=139  Identities=23%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..||+|||||++|++|||+|+++|++|+|+|++...||.....+   .+.+..                           
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG---mlf~~i---------------------------   79 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG---MLFNKI---------------------------   79 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc---ccccee---------------------------
Confidence            47999999999999999999999999999999987764322211   111000                           


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                             .+ .      +.....+++.+++++...                  .++     ...|+..++..|...+.+.
T Consensus        80 -------Vv-~------~~a~~iL~e~gI~ye~~e------------------~g~-----~v~ds~e~~skl~~~a~~a  122 (262)
T COG1635          80 -------VV-R------EEADEILDEFGIRYEEEE------------------DGY-----YVADSAEFASKLAARALDA  122 (262)
T ss_pred             -------ee-c------chHHHHHHHhCCcceecC------------------Cce-----EEecHHHHHHHHHHHHHhc
Confidence                   00 0      112223344454432211                  011     2446778888888889999


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEc------CCC-----cEEEcCEEEEcCCCChH
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVT------SNG-----EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~VV~A~G~~s~  214 (413)
                      |++|+..+.|.++..  .++.+...|.+      ..+     -.++|+.||-|||.-+.
T Consensus       123 Gaki~n~~~veDvi~--r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~  179 (262)
T COG1635         123 GAKIFNGVSVEDVIV--RDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAE  179 (262)
T ss_pred             CceeeecceEEEEEE--ecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchH
Confidence            999999999999887  53323333322      112     26899999999998653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=3.5e-11  Score=118.75  Aligned_cols=192  Identities=16%  Similarity=0.147  Sum_probs=101.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      +..+||+|||+|+||++||+.+++.|.+|+||||....++. +....++ +.....  .....+.      .+....+. 
T Consensus        10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~-s~~a~Gg-i~a~~~~~~~Ds~e~------~~~d~~~~-   80 (598)
T PRK09078         10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH-TVAAQGG-ISASLGNMGEDDWRW------HMYDTVKG-   80 (598)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc-hhhhcCC-cccccCCCCCCCHHH------HHHHHHHh-
Confidence            35689999999999999999999999999999998765432 2222222 221111  0000000      01111111 


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccC-----CCCeEEEEecCCceeChHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEI-----PENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      +.. ......+.   .-.+.....++++..+|+++........ ...++. ...     +......+...   -....+.
T Consensus        81 g~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~~~~~~~~~~~~R~~~~~d---~tG~~i~  152 (598)
T PRK09078         81 SDW-LGDQDAIE---YMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGG-MTTNYGKGPPAQRTCAAAD---RTGHAIL  152 (598)
T ss_pred             ccC-CCCHHHHH---HHHHHHHHHHHHHHHcCCcceecCCCceeecccCc-eecccCCCCccceeEecCC---CCHHHHH
Confidence            000 00000000   0001113445566667776532111000 001111 000     00011111111   1234678


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChHH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      ..|.+.+++.|+++++++.|++|..  ++++.++.+.   ..+|+  .+.|+.||+|||++...
T Consensus       153 ~~L~~~~~~~gi~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  214 (598)
T PRK09078        153 HTLYQQSLKHNAEFFIEYFALDLIM--DDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRA  214 (598)
T ss_pred             HHHHHHHhhcCCEEEEeEEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccc
Confidence            8888888889999999999999987  6323344443   34665  68899999999998753

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=4.3e-11  Score=117.77  Aligned_cols=194  Identities=18%  Similarity=0.174  Sum_probs=103.3

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc---CCCChHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY---PEDYYHPMVLESCLLWEQ   77 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~   77 (413)
                      |......+||+|||+|.||++||+.+++.|.+|+||||....++. +.... +.+....   .......+       +..
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~-t~~a~-Ggi~a~~~~~~~Ds~e~~-------~~D   71 (588)
T PRK08958          1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH-TVSAQ-GGITVALGNTHEDNWEWH-------MYD   71 (588)
T ss_pred             CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc-cHHhh-hhHhhhcCCCCCCCHHHH-------HHH
Confidence            333345689999999999999999999999999999998765432 22222 2221111   11111111       111


Q ss_pred             HHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCC----CCeEEEEecCCceeCh
Q 015088           78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIP----ENWVGVATELGGVIKP  152 (413)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~  152 (413)
                      ..+... . ......+   ..-.+...+.++++..+|+++........ ...++. ....    ......+..+   -..
T Consensus        72 ~~~~g~-~-~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~~~~~~~~~~~r~~~~~~---~~G  142 (588)
T PRK08958         72 TVKGSD-Y-IGDQDAI---EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAAAAD---RTG  142 (588)
T ss_pred             HHHHhC-C-CCCHHHH---HHHHHHHHHHHHHHHHcCCCcccCCCCceeeccccc-ccccccccccceeEecCC---CCH
Confidence            111100 0 0000000   00001123556667777877632111000 001111 0000    0011111111   123


Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ..+...|.+.+.+.|+++++++.++++..  ++++..+.+.   ..+|+  .+.|+.||+|||++..
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            56788888888888999999999999987  5333444443   34554  6789999999999874

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=3.4e-11  Score=118.20  Aligned_cols=188  Identities=13%  Similarity=0.064  Sum_probs=98.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHH-HHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCL-LWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~   84 (413)
                      ..+||+|||+|.||++||+.+++.|.+|+||||....++. +.... +.+.........   ...+.+ .+...... +.
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~-s~~a~-Ggi~~~~~~~~~---~~Ds~e~~~~d~~~~-g~   77 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH-SAAAE-GGIAAYIPGNSD---PNDNPDYMTYDTVKG-GD   77 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc-chhhc-cchhhhccccCC---CcccHHHHHHHHHHh-hc
Confidence            4689999999999999999999999999999998765432 22222 222111100000   000011 11111111 00


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      . ......+   ..-.+...+.++++..+|+++..-....+ ...++.    .......+...   -....++..|.+.+
T Consensus        78 ~-~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~~  146 (566)
T PRK06452         78 Y-LVDQDAA---ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGG----QTYPRTRFVGD---KTGMALLHTLFERT  146 (566)
T ss_pred             c-CCCHHHH---HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcC----ccCCeeEecCC---CCHHHHHHHHHHHH
Confidence            0 0000000   00001123455666777776532111000 011111    00111111111   12356778888888


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCCh
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s  213 (413)
                      .+.|+++++++.++++..  ++ +..+.+..   .+|+  .+.|+.||+|||++.
T Consensus       147 ~~~gv~i~~~~~~~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        147 SGLNVDFYNEWFSLDLVT--DN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HhCCCEEEeCcEEEEEEE--EC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            888999999999999987  63 34444432   2443  678999999999876

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.36  E-value=3.2e-11  Score=117.83  Aligned_cols=187  Identities=15%  Similarity=0.132  Sum_probs=99.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ..+||+|||+|+||++||+.+++.|.+|+||||....++  ++....+.+..... .....       ..+..+.+..+.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~ds~e-------~~~~d~~~~g~g   85 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDG--STRWAQGGIAAVLDPGDSPE-------AHVADTLVAGAG   85 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCC--chhhhccceeeccCCCCCHH-------HHHHHHHHhcCC
Confidence            468999999999999999999999999999999987643  23222222221111 11111       111222111100


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .  .....+   ..-.+...+.++++.++|+++..-....+ ...+..     ......+.. .+......+.+.|.+.+
T Consensus        86 ~--~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g-----~~~~r~~~~-~~d~~G~~i~~~L~~~~  154 (541)
T PRK07804         86 L--CDPDAV---RSLVAEGPRAVRELVALGARFDESPDGRWALTREGG-----HSRRRIVHA-GGDATGAEVQRALDAAV  154 (541)
T ss_pred             C--CCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCC-----eecCeeEec-CCCCCHHHHHHHHHHHH
Confidence            0  000000   00001112345566667776432110000 000000     000001111 01113457888899999


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCe--EEEE-----cCCC-cEEEcCEEEEcCCCChH
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGG--VTVV-----TSNG-EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~-----~~~g-~~i~ad~VV~A~G~~s~  214 (413)
                      ++.|+++++++.|+++..  ++++..  +.+.     ..++ ..+.|+.||+|+|+++.
T Consensus       155 ~~~gV~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        155 RADPLDIREHALALDLLT--DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             HhCCCEEEECeEeeeeEE--cCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            889999999999999987  632233  3333     2333 26899999999999774

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.36  E-value=6.6e-12  Score=120.35  Aligned_cols=180  Identities=20%  Similarity=0.186  Sum_probs=96.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCcccCCCceeecccCCCC-hHHHHHHHHHHHHHHHHHhCCee
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ||||||+|++|++||+.++++| .+|+||||....++.  +....+.+........ ..........+++.+.+....  
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~--s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--   76 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGN--SAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRG--   76 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCc--ccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCC--
Confidence            8999999999999999999999 999999999876543  2222222221111000 000000001112222111000  


Q ss_pred             EEeeceeeeCCCChhhH-------HHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           87 YFKAHQFDMGPSENKSL-------RSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                                ..+.+.+       ....+++. .++.++...   . .....     ......+.+..+......+++.|
T Consensus        77 ----------~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~---~-~~~~~-----~~~~~~~~~~~g~~~g~~l~~~l  136 (439)
T TIGR01813        77 ----------INDPELVRILAEESADAVDWLQ-DGVGARLDD---L-IQLGG-----HSVPRAHRPTGGAGSGAEIVQKL  136 (439)
T ss_pred             ----------CCCHHHHHHHHhccHHHHHHHH-hCCCeeecc---c-cccCC-----cCCCccccCCCCCCCHHHHHHHH
Confidence                      0001101       12233333 232221110   0 00000     00011122223344567889999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .+.+++.|++++++++|+++..  ++++..  +.+.+.+++  .+.++.||+|+|+++.
T Consensus       137 ~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       137 YKKAKKEGIDTRLNSKVEDLIQ--DDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHcCCEEEeCCEeeEeEE--CCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            9999999999999999999987  633333  334444554  4788999999999875

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.36  E-value=4.3e-10  Score=106.07  Aligned_cols=70  Identities=19%  Similarity=0.208  Sum_probs=48.0

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecc-cCCCeEEEE--cCC-----C--cEEEcCEEEEcCCCChHHhhh
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD-AVKGGVTVV--TSN-----G--EKFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~~~v~--~~~-----g--~~i~ad~VV~A~G~~s~~l~~  218 (413)
                      .++-..+-+.|.+.+.+.|++++..+ +.++..  . +.++.+.|+  ..+     |  .+++|+.||.|+|..| .+.+
T Consensus        89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~--~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~  164 (398)
T TIGR02028        89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSL--PADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAK  164 (398)
T ss_pred             eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEe--ccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHH
Confidence            46667888889999999999998764 777753  2 112344443  222     3  3699999999999987 4555


Q ss_pred             hhcCC
Q 015088          219 RITGL  223 (413)
Q Consensus       219 ~~~g~  223 (413)
                      .+ +.
T Consensus       165 ~~-g~  168 (398)
T TIGR02028       165 EI-DA  168 (398)
T ss_pred             Hh-CC
Confidence            54 54

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.36  E-value=5.3e-11  Score=117.70  Aligned_cols=190  Identities=13%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||+|+||++||+.+++.|.+|+||||....++. +....+++.....  .......       .+.+..+. +
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~-s~~a~Ggi~a~~~~~~~Ds~e~-------~~~Dt~~~-g  119 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH-TVAAQGGINAALGNMTEDDWRW-------HMYDTVKG-S  119 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc-hHHhhcCceeecCCCCCCCHHH-------HHHHHHHh-h
Confidence            4689999999999999999999999999999998765432 2222222211111  1111111       11111111 0


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCC-----CCeEEEEecCCceeChHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIP-----ENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .. ..+...+.   .-.+...+.++++..+|+++..-....+ ...++. ....     ......+.   +--....+..
T Consensus       120 ~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg-~s~~~~~~g~~~r~~~~---~d~tG~~i~~  191 (635)
T PLN00128        120 DW-LGDQDAIQ---YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGG-QSLDFGKGGQAYRCACA---ADRTGHAMLH  191 (635)
T ss_pred             CC-CCCHHHHH---HHHHhHHHHHHHHHhCCCccccCCCCceeeccccc-cccccCCCcceeeeecc---CCCCHHHHHH
Confidence            00 00000000   0001123455666777776532110000 011111 0000     00011111   1112356788


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .|.+.+++.|++++.++.++++..  ++++....+.  . .+|+  .+.|+.||+|||++..
T Consensus       192 ~L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  251 (635)
T PLN00128        192 TLYGQAMKHNTQFFVEYFALDLIM--DSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHHhCCCEEEEeeEEEEEEE--cCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence            888888888999999999999877  5323344443  2 3564  6789999999999875

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.35  E-value=6.2e-11  Score=117.21  Aligned_cols=190  Identities=14%  Similarity=0.126  Sum_probs=101.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc--CCCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY--PEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||+|.||++||+.+++.|.+|+||||....++. +....+++.....  ........       +....+...
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~-t~~a~Ggi~a~~~~~~~Ds~e~~-------~~D~~~~g~   99 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH-TVAAQGGINAALGNMTEDDWRWH-------AYDTVKGSD   99 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC-chhhcCCeeEEecCCCCCCHHHH-------HHHHHHHhC
Confidence            4689999999999999999999999999999998775432 2222222211111  11111111       111111100


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCC-----CCeEEEEecCCceeChHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIP-----ENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .  ..+...+   ..-.+...+.++++.++|+++.......+. ..++. ....     ......+..+   -....+..
T Consensus       100 ~--~~d~~lv---~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~~r~~~~~d---~tG~~i~~  170 (617)
T PTZ00139        100 W--LGDQDAI---QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGG-QSLKFGKGGQAYRCAAAAD---RTGHAMLH  170 (617)
T ss_pred             C--CCCHHHH---HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCc-ccccccCCCccceeeecCC---CcHHHHHH
Confidence            0  0000000   000011234566667778776432111000 01111 0000     0001111110   12357888


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .|.+.+++.|++++.++.++++..  ++++.+..+   ...+|+  .+.|+.||+|||++..
T Consensus       171 ~L~~~a~~~gv~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        171 TLYGQSLKYDCNFFIEYFALDLIM--DEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHhCCCEEEeceEEEEEEE--CCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence            999999999999999999999876  433334333   334564  6789999999999864

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.35  E-value=6e-10  Score=105.23  Aligned_cols=58  Identities=12%  Similarity=0.015  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.|.+.+.+.|++++++++|++++.  .+ +..+.|+. .+|+  +++||.||.|.|.+|
T Consensus       103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~--~~-~~~~~V~~~~~G~~~~i~ad~vVgADG~~S  163 (392)
T PRK08243        103 TEVTRDLMAARLAAGGPIRFEASDVALHD--FD-SDRPYVTYEKDGEEHRLDCDFIAGCDGFHG  163 (392)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeeeEEEEEe--cC-CCceEEEEEcCCeEEEEEeCEEEECCCCCC
Confidence            45667777777788999999999999865  32 23344443 3564  689999999999987

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=4.7e-11  Score=118.44  Aligned_cols=190  Identities=18%  Similarity=0.165  Sum_probs=96.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecc-c--CCCChHHHHHHHHHHHHHHHHHh
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRAT-Y--PEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      .++||+|||+|.||++||+.+++.|.+|+||||....++..+....+++.... .  .....       ...+....+.-
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~-------~~~~~d~~~~g  106 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSV-------YRLFYDTVKGG  106 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCH-------HHHHHHHHHhc
Confidence            46899999999999999999999999999999876543222211111221100 0  00101       11112111110


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHH-HHHHcCCcccCCCCeEEEEecC-CceeChHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ-VLEKYSGRIEIPENWVGVATEL-GGVIKPTKAVSMFQ  160 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  160 (413)
                      ..  ......+..   -.......++++..+|+++..-.... ....++.    .......+... .+..-...+.+.|.
T Consensus       107 ~~--~~d~~lv~~---l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gg----hs~~R~~~~~~~tG~~i~~~l~~~L~  177 (640)
T PRK07573        107 DF--RAREANVYR---LAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG----AQVSRTFYARGQTGQQLLLGAYQALS  177 (640)
T ss_pred             CC--CCCHHHHHH---HHHHHHHHHHHHHhcCCccccCCCCceeccccCC----cccceeEeCCCCCchhHHHHHHHHHH
Confidence            00  000000000   00112355666777787653210000 0001111    00111111111 11110112235666


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.+++.|++|++++.|+++..  ++ +.++.|..   .+|+  .+.|+.||+|||+++.
T Consensus       178 ~~~~~~gV~i~~~t~v~~Li~--d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        178 RQIAAGTVKMYTRTEMLDLVV--VD-GRARGIVARNLVTGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHhcCCEEEeceEEEEEEE--eC-CEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence            677788999999999999987  63 33444432   2454  6889999999999775

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.34  E-value=2.1e-11  Score=120.50  Aligned_cols=179  Identities=15%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||+|.||++||+.+++.  |.+|+||||....++...+.+.. .+.........      ....++.+.....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~-~~~~~~~~~ds------~e~~~~d~~~~~~   82 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLS-AINAYIGEGET------PEDYVRYVRKDLM   82 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCcc-ccccccccCCC------HHHHHHHHHHhcc
Confidence            358999999999999999999998  99999999987643221111111 11111111000      0011112211100


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                       .. .....+   ..-.+...+.++++..+|+++.....       .. +. ...      .....+++..+.+.|.+.+
T Consensus        83 -~~-~d~~lv---~~~~~~s~~~i~~L~~~Gv~f~~~~~-------G~-~~-~~g------~~~~~~~G~~~~~~L~~~a  142 (608)
T PRK06854         83 -GI-VREDLV---YDIARHVDSVVHLFEEWGLPIWKDEN-------GK-YV-RRG------RWQIMINGESYKPIVAEAA  142 (608)
T ss_pred             -CC-CCHHHH---HHHHHhHHHHHHHHHHcCCeeeecCC-------CC-cc-ccC------CccCCCChHHHHHHHHHHH
Confidence             00 000000   00001123455566667765432110       00 00 000      0001134567778888888


Q ss_pred             HHCC-CEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088          164 IKNG-AVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ++.+ +++++++.|+++..  ++ +..+.+   .+.+++  .+.|+.||+|||+++.
T Consensus       143 ~~~ggV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        143 KKALGDNVLNRVFITDLLV--DD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             HhcCCCEEEeCCEEEEEEE--eC-CEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            8775 99999999999986  53 233333   334554  6899999999999874

>TIGR00275 flavoprotein, HI0933 family

Probab=99.34  E-value=1.7e-11  Score=115.44  Aligned_cols=177  Identities=20%  Similarity=0.232  Sum_probs=100.2

Q ss_pred             EEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCcee-ecccCCCChHHHHHHHHHHHHHHHHHhCCeeEEe
Q 015088           11 IVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTI-RATYPEDYYHPMVLESCLLWEQAQSEIGYKVYFK   89 (413)
Q Consensus        11 vIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   89 (413)
                      +|||||++|+++|+.|+++|++|+|+|+....|+.....+++.+. .+......+.........+.......        
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~--------   72 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR--------   72 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHh--------
Confidence            699999999999999999999999999998765432222222111 11000000000000000000000000        


Q ss_pred             eceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCE
Q 015088           90 AHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAV  169 (413)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~  169 (413)
                              .   ......+++...|+++.....                 ..++ +.  .-....+.+.+.+.+++.|++
T Consensus        73 --------~---~~~d~~~~~~~~Gv~~~~~~~-----------------g~~~-p~--~~~a~~v~~~L~~~l~~~gv~  121 (400)
T TIGR00275        73 --------F---SNKDLIDFFESLGLELKVEED-----------------GRVF-PC--SDSAADVLDALLNELKELGVE  121 (400)
T ss_pred             --------C---CHHHHHHHHHHcCCeeEEecC-----------------CEeE-CC--CCCHHHHHHHHHHHHHHCCCE
Confidence                    0   112333444555554322110                 0011 10  112367888899999999999


Q ss_pred             EEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh----------HHhhhhhcCCcc-ceeEEEE
Q 015088          170 LRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV----------GKLVKRITGLEL-PIQAVET  232 (413)
Q Consensus       170 i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s----------~~l~~~~~g~~~-~~~~~~g  232 (413)
                      ++++++|+++..  +  ++.+.++++ ++++.+|.||+|+|.++          -.++.++ |..+ +..|...
T Consensus       122 i~~~~~V~~i~~--~--~~~~~v~~~-~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~l-G~~i~~~~P~l~  189 (400)
T TIGR00275       122 ILTNSKVKSIKK--D--DNGFGVETS-GGEYEADKVILATGGLSYPQLGSTGDGYEIAESL-GHTIVPPVPALV  189 (400)
T ss_pred             EEeCCEEEEEEe--c--CCeEEEEEC-CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHC-CCCEecccceEe
Confidence            999999999977  6  356777774 45699999999999865          3556665 6542 4444333

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.34  E-value=3.3e-11  Score=114.49  Aligned_cols=183  Identities=12%  Similarity=0.073  Sum_probs=94.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||+|.||++||+.+. .|.+|+||||....++.  +....+.+.........       ..+++.+.+.-...
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~--s~~a~ggi~~~~~~d~~-------~~~~~d~~~~g~~~   72 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN--TYLAQGGISVARNKDDI-------TSFVEDTLKAGQYE   72 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc--hHHHhHhheeCCCCCCH-------HHHHHHHHHHhCCC
Confidence            4689999999999999999985 69999999998876432  22112222111111111       11222221110000


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                        .....+   ..-.+...+.++++.++|+++..-.........+.    .......+ +.  ......+.+.|.+.+++
T Consensus        73 --~d~~lv---~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~----~~~~r~~~-~~--~~~g~~l~~~L~~~~~~  140 (433)
T PRK06175         73 --NNLEAV---KILANESIENINKLIDMGLNFDKDEKELSYTKEGA----HSVNRIVH-FK--DNTGKKVEKILLKKVKK  140 (433)
T ss_pred             --CCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCceeeeccCc----cccCeEEe-cC--CCChHHHHHHHHHHHHh
Confidence              000000   00001123455666667765432110000000000    00001111 11  11235678888877775


Q ss_pred             -CCCEEEcCceEEEEEEecccCCCeEEEE-cCCCc--EEEcCEEEEcCCCCh
Q 015088          166 -NGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 -~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~VV~A~G~~s  213 (413)
                       .|++|+++++|++|..  ++ +..+.+. +.++.  .+.|+.||+|+|++.
T Consensus       141 ~~gV~i~~~t~v~~Li~--~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        141 RKNITIIENCYLVDIIE--ND-NTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             cCCCEEEECcEeeeeEe--cC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence             4999999999999977  53 2333322 22343  589999999999865

>PRK08275 putative oxidoreductase; Provisional

Probab=99.33  E-value=9.7e-11  Score=115.03  Aligned_cols=188  Identities=15%  Similarity=0.125  Sum_probs=98.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQ   77 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~   77 (413)
                      |+..+..+||+|||+|.||++||+.+++.  |.+|+||||....++...+.+..++...... ....       ...+..
T Consensus         3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~-------~~~~~d   75 (554)
T PRK08275          3 MNTQEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATP-------EQYTKE   75 (554)
T ss_pred             CCceeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCH-------HHHHHH
Confidence            44444678999999999999999999987  6899999998764322211121111110000 0000       111111


Q ss_pred             HHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCc---eeChHH
Q 015088           78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGG---VIKPTK  154 (413)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  154 (413)
                      +.+... .. .....+..   -.......++++..+|+++.....       +. +....    .......   .-....
T Consensus        76 ~~~~~~-~~-~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~-------g~-~~~~~----~~~~~~~~~~~~~G~~  138 (554)
T PRK08275         76 ITIAND-GI-VDQKAVYA---YAEHSFETIQQLDRWGVKFEKDET-------GD-YAVKK----VHHMGSYVLPMPEGHD  138 (554)
T ss_pred             HHHhcC-CC-ccHHHHHH---HHHhhHHHHHHHHHCCCeeEeCCC-------CC-Eeeec----ccccCcccccCCChHH
Confidence            111100 00 00000000   000113445566667766532110       00 00000    0000000   002346


Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.+.|.+.+++.|+++++++.|++|..  ++++....+.   +.+|+  .+.|+.||+|||+++.
T Consensus       139 i~~~L~~~~~~~gv~i~~~~~v~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        139 IKKVLYRQLKRARVLITNRIMATRLLT--DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHHHHCCCEEEcceEEEEEEE--cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            788898988889999999999999987  5223333332   34564  5889999999999763

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.33  E-value=4.8e-11  Score=114.85  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=51.4

Q ss_pred             ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +++|...+...+.+.+++. |++++ .+.|+++..  ++ +....|.+.+|..+.|+.||+|+|.|.+
T Consensus        95 aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~--e~-grV~GV~t~dG~~I~Ak~VIlATGTFL~  158 (618)
T PRK05192         95 AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV--EN-GRVVGVVTQDGLEFRAKAVVLTTGTFLR  158 (618)
T ss_pred             HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEeeCcchh
Confidence            5788899999999888876 78886 678999876  52 3566788888988999999999997763

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.33  E-value=3.9e-10  Score=108.85  Aligned_cols=43  Identities=40%  Similarity=0.549  Sum_probs=38.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~   51 (413)
                      +|+|||||++|++||+.|+++|  ++|+|+|+++..||+..+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~   46 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRK   46 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEee
Confidence            6999999999999999999988  899999999999988776543

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.33  E-value=6.9e-10  Score=105.67  Aligned_cols=59  Identities=7%  Similarity=0.076  Sum_probs=47.0

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++...+.+.|.+.+.  ...++++++|++|..  +  ++.+.+.+.+|.++++|.||.|+|.+|.
T Consensus       102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~--~--~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       102 VHRADFLDALLKHLP--EGIASFGKRATQIEE--Q--AEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CCHHHHHHHHHHhCC--CceEEcCCEEEEEEe--c--CCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            555677777776653  356888999999987  6  4568888888888999999999999984

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.33  E-value=9.7e-12  Score=106.29  Aligned_cols=65  Identities=25%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ...+.+.+...+++.+.+++++++|+++..  +  ++.|.|++.++++++|++||+|+|.++.+..+.+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~--~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~  145 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRR--D--GDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI  145 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEE--E--TTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEE--e--ccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence            356778888889999999999999999998  7  4559999999977999999999998765444333

...

>PLN02985 squalene monooxygenase

Probab=99.32  E-value=1.2e-09  Score=105.92  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCC-CeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhh
Q 015088          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..++-..+.+.|.+.+.+. +++++.+ +|+++..  +++. .++.+.+.+|+  ++.||.||.|+|.+|. +-+.+
T Consensus       142 ~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~--~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l  214 (514)
T PLN02985        142 RSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE--EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSL  214 (514)
T ss_pred             eeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE--cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHh
Confidence            3455678889999888776 7998854 6777766  5221 13444455665  4679999999999884 33333

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.32  E-value=1.5e-10  Score=109.67  Aligned_cols=61  Identities=13%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             eChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEc---CCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++-..+.+.|.+.+.+. +++++++++|+++..  +  ++.+.++.   .+++++++|.||.|.|.+|.
T Consensus       104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--~--~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--T--GNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--C--CCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            45578888898888764 899999999999987  6  34455543   34457999999999999883

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.31  E-value=4.8e-11  Score=117.67  Aligned_cols=41  Identities=32%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      +.++||+|||+|++|+++|+.++++|.+|+||||....+|.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~   47 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT   47 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence            45799999999999999999999999999999999877544

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.31  E-value=2.9e-11  Score=119.14  Aligned_cols=184  Identities=14%  Similarity=0.148  Sum_probs=97.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~   80 (413)
                      .+||+|||||+||++||+.+++.|  .+|+||||....++ .+....++ +....    .......       .+.....
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg-~s~~a~GG-i~a~~~~~~~~ds~e~-------~~~d~~~   73 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS-HSVAAQGG-IAASLKNVDPEDSWEA-------HAFDTVK   73 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch-hhHHhccc-hhhhccCCCCCCCHHH-------HHHHHHH
Confidence            589999999999999999999874  89999999876543 22222222 21111    1111111       0111111


Q ss_pred             HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      . +.. ......+.   .-.......++++..+|+++.......+. ..+..    .......+...   .....+...|
T Consensus        74 ~-~~~-l~d~~~v~---~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~tG~~i~~~L  141 (575)
T PRK05945         74 G-SDY-LADQDAVA---ILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGG----HSHNRTCYAAD---KTGHAILHEL  141 (575)
T ss_pred             H-hCC-CCCHHHHH---HHHHHHHHHHHHHHHcCCceEECCCCcEeeccccc----cccCeeEecCC---CChHHHHHHH
Confidence            1 000 00000000   00011134445566677765432211100 00111    00011111111   1235678888


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .+.+++.|+++++++.|+++..  +++ ....   +.+.+|+  .+.|+.||+|||+++.
T Consensus       142 ~~~~~~~gi~i~~~t~v~~L~~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        142 VNNLRRYGVTIYDEWYVMRLIL--EDN-QAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHhhCCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            8888888999999999999987  532 3222   2344554  5899999999999864

>TIGR00551 nadB L-aspartate oxidase

Probab=99.30  E-value=1e-10  Score=113.24  Aligned_cols=184  Identities=16%  Similarity=0.111  Sum_probs=98.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      .+||+|||+|+||++||+.+++.|. |+||||....++  ++....+.+..........      ...+..+.+....  
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g--~s~~a~Ggi~~~~~~~ds~------e~~~~d~~~~~~~--   70 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEG--NSFYAQGGIAAVLAETDSI------DSHVEDTLAAGAG--   70 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCC--cchhcCcCeeeeecCCCCH------HHHHHHHHHhcCC--
Confidence            4799999999999999999999997 999999976543  2222222222111111000      0111222111000  


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ..+...+..   -.+.....++++..+|+++.......+. ...+.    .......+.   +......+...|.+.+++
T Consensus        71 ~~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~---~~~~G~~l~~~L~~~~~~  140 (488)
T TIGR00551        71 ICDREAVEF---VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGG----HSYRRILHA---ADATGREVITTLVKKALN  140 (488)
T ss_pred             cCCHHHHHH---HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCC----cCCCeEEEe---CCCCHHHHHHHHHHHHHh
Confidence            000000000   0011234556667777765322111100 00111    000111111   112346788889998887


Q ss_pred             -CCCEEEcCceEEEEEEecccCCCeEEEEc--CCC-cEEEcCEEEEcCCCChH
Q 015088          166 -NGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNG-EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 -~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g-~~i~ad~VV~A~G~~s~  214 (413)
                       .|+++++++.|++|..  ++ +....+..  .++ ..+.++.||+|+|+++.
T Consensus       141 ~~gi~i~~~~~v~~l~~--~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       141 HPNIRIIEGENALDLLI--ET-GRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             cCCcEEEECeEeeeeec--cC-CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence             6999999999999987  53 23333333  222 26899999999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.30  E-value=1.8e-10  Score=107.16  Aligned_cols=193  Identities=13%  Similarity=0.073  Sum_probs=98.1

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccce
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI  227 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~  227 (413)
                      ..++...+.+.+.+.+..   .++++++|+++..      +.+.+  .+|++++|+.||.|.|..+.....      .-.
T Consensus        84 ~~I~r~~f~~~l~~~l~~---~i~~~~~V~~v~~------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~------~~~  146 (370)
T TIGR01789        84 RSMTSTRFHEGLLQAFPE---GVILGRKAVGLDA------DGVDL--APGTRINARSVIDCRGFKPSAHLK------GGF  146 (370)
T ss_pred             eEEEHHHHHHHHHHhhcc---cEEecCEEEEEeC------CEEEE--CCCCEEEeeEEEECCCCCCCcccc------cee
Confidence            344556666666554432   2677889998843      23555  577789999999999987542221      234


Q ss_pred             eEEEEEEEEEEecCCCCCccccCCCCCeEE------EcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHH
Q 015088          228 QAVETTVCYWRIKEGNEADYAVGGDFPSFA------SYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS  301 (413)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (413)
                      +...|..+.+.. +.     .+  ..+.+.      ..+...+|..|.....  +.+-.+. ....|..   +.+...+.
T Consensus       147 Q~f~G~~~r~~~-p~-----~~--~~~~lMD~~~~q~~g~~F~Y~lP~~~~~--~lvE~T~-~s~~~~l---~~~~l~~~  212 (370)
T TIGR01789       147 QVFLGREMRLQE-PH-----GL--ENPIIMDATVDQLAGYRFVYVLPLGSHD--LLIEDTY-YADDPLL---DRNALSQR  212 (370)
T ss_pred             eEEEEEEEEEcC-CC-----CC--CccEEEeeeccCCCCceEEEECcCCCCe--EEEEEEe-ccCCCCC---CHHHHHHH
Confidence            455565554432 21     11  112221      1223467888876532  3332110 1110111   11224455


Q ss_pred             HHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEe----cCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088          302 LKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVI----DFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~i----g~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      |.+++.+.  .+.. .+++....|+.|++-++.+.-    +......|..-...-...|.|+..+--.|..||+.+.
T Consensus       213 l~~~~~~~--g~~~-~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~  286 (370)
T TIGR01789       213 IDQYARAN--GWQN-GTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPD  286 (370)
T ss_pred             HHHHHHHh--CCCc-eEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccC
Confidence            66666554  2222 245666668888755421110    0000000112222233456788888888888887774

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.30  E-value=2.4e-11  Score=120.68  Aligned_cols=196  Identities=16%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ...+||+|||||+||++||+.+++.|.+|+||||....++. +....+++ ....... ...........+.+..+....
T Consensus         3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~-s~~a~GGi-~a~~g~~-~~g~~Ds~e~~~~Dt~k~~~~   79 (657)
T PRK08626          3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH-SAAAQGGM-QASLGNA-VKGEGDNEDVHFADTVKGSDW   79 (657)
T ss_pred             ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc-hHHHhhhH-Hhhcccc-ccCCCCCHHHHHHHHHHhcCC
Confidence            45789999999999999999999999999999998765432 11111121 1110000 000000001112222222111


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCH-----------------HHHHHHcCC-cccCCCCeEEEEecC
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDC-----------------RQVLEKYSG-RIEIPENWVGVATEL  146 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~~  146 (413)
                      .+......     .-.....+.++++..+|+++.....                 .+....... .+.-...+...+..+
T Consensus        80 ~~D~~~vr-----~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d  154 (657)
T PRK08626         80 GCDQEVAR-----MFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTAD  154 (657)
T ss_pred             CCCHHHHH-----HHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCC
Confidence            00000000     0001113445555666665432110                 000000000 000000111112111


Q ss_pred             CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEc-CCCc--EEEcCEEEEcCCCChH
Q 015088          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVT-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                       +  ....+...|.+.+.+.|+++++++.|++|..  ++ +.+  +.+.+ .+|+  .+.|+.||+|||++..
T Consensus       155 -~--tG~~l~~~L~~~~~~~gv~i~~~~~~~~Li~--~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        155 -G--TGHTMLYAVDNEAIKLGVPVHDRKEAIALIH--DG-KRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             -C--cHHHHHHHHHHHHHhCCCEEEeeEEEEEEEE--EC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence             1  1245667788888889999999999999987  63 233  33433 4665  5689999999998774

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.30  E-value=1.4e-10  Score=114.49  Aligned_cols=187  Identities=16%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g---~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~   78 (413)
                      +..++||+|||+|+||++||+.+++.|   .+|+||||....++. +....+++......  .......       +...
T Consensus         2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~-s~~a~Gg~~a~~~~~~~ds~e~~-------~~d~   73 (577)
T PRK06069          2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH-SVSAEGGTAAVLYPEKGDSFDLH-------AYDT   73 (577)
T ss_pred             CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC-ceecccccceeeccccCCCHHHH-------HHHH
Confidence            345689999999999999999999998   899999999876432 22121222111111  0000010       1111


Q ss_pred             HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .+. +.. ......+.   .-.+...+.++++.++|+++.......+ ...+.+    .......+...   -....+.+
T Consensus        74 ~~~-g~~-~~d~~lv~---~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g----~~~~r~~~~~d---~tG~~i~~  141 (577)
T PRK06069         74 VKG-SDF-LADQDAVE---VFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGG----MSFPRTTFAAD---KTGFYIMH  141 (577)
T ss_pred             HHh-hcc-cCCHHHHH---HHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCC----cccceeeEcCC---CchHHHHH
Confidence            111 000 00000000   0001113445666777776532111000 000111    00111111111   01345778


Q ss_pred             HHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCCh
Q 015088          158 MFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       158 ~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s  213 (413)
                      .|.+.+.+ .|+++++++.|+++..  ++ +..+.   +...+|+  .+.|+.||+|||+++
T Consensus       142 ~L~~~~~~~~gv~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        142 TLYSRALRFDNIHFYDEHFVTSLIV--EN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHHhcCCCEEEECCEEEEEEE--EC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            88887766 5999999999999987  53 22322   2334564  589999999999975

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.30  E-value=4.9e-11  Score=116.00  Aligned_cols=44  Identities=34%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      |+.-+.++||||||+| +|+++|+++++.|.+|+||||....|+.
T Consensus         1 ~~~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~   44 (513)
T PRK12837          1 MSAWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT   44 (513)
T ss_pred             CCCCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            4444558999999999 9999999999999999999999876543

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.30  E-value=1.3e-10  Score=114.88  Aligned_cols=183  Identities=17%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ||+|||+|++|++||+.+++.|.+|+||||....++.  +....+.+.....   ......      ..+......... 
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~--s~~a~Gg~~~~~~~~~~~d~~e------~~~~d~~~~~~~-   71 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH--TVAAQGGMAAALGNVDPDDSWE------WHAYDTVKGSDY-   71 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc--chhhccCeEeecCCCCCCccHH------HHHHHHHHHhCC-
Confidence            8999999999999999999999999999998765332  2111122211111   000000      001111110000 


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                       ......+..   -.+.....++++..+|+++........ ...+..    .......+...   .....+...|.+.++
T Consensus        72 -~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~~~  140 (566)
T TIGR01812        72 -LADQDAVEY---MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGG----HSKDRTCYAAD---KTGHALLHTLYEQCL  140 (566)
T ss_pred             -CCCHHHHHH---HHHHHHHHHHHHHHcCCcceecCCCcEeeccccc----cccCeeEECCC---CCHHHHHHHHHHHHH
Confidence             000000000   000112445566677776532211100 000111    00111111111   123467788888888


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.|+++++++.|++|..  ++ +....+.   ..+|+  .+.|+.||+|+|+++.
T Consensus       141 ~~gv~i~~~~~v~~L~~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~  192 (566)
T TIGR01812       141 KLGVSFFNEYFALDLIH--DD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR  192 (566)
T ss_pred             HcCCEEEeccEEEEEEE--eC-CEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence            88999999999999987  63 2333332   34564  6899999999999763

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.29  E-value=3.9e-11  Score=98.65  Aligned_cols=139  Identities=23%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||||++|++||++|++.|++|+|+|++...||.....+.  .+..                            
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~--lf~~----------------------------   65 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGM--LFNK----------------------------   65 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CT--T-------------------------------
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccccccc--ccch----------------------------
Confidence            3689999999999999999999999999999998777543322211  0000                            


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                             +.+..       .....+.+.+++++...                  .++     ...|+..+...|...+.+
T Consensus        66 -------iVVq~-------~a~~iL~elgi~y~~~~------------------~g~-----~v~d~~~~~s~L~s~a~~  108 (230)
T PF01946_consen   66 -------IVVQE-------EADEILDELGIPYEEYG------------------DGY-----YVADSVEFTSTLASKAID  108 (230)
T ss_dssp             -------EEEET-------TTHHHHHHHT---EE-S------------------SEE-----EES-HHHHHHHHHHHHHT
T ss_pred             -------hhhhh-------hHHHHHHhCCceeEEeC------------------CeE-----EEEcHHHHHHHHHHHHhc
Confidence                   00000       00111223333321110                  112     234777888888888888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEc------CCC-----cEEEcCEEEEcCCCCh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVT------SNG-----EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~------~~g-----~~i~ad~VV~A~G~~s  213 (413)
                      .|++++..+.|.++..  .+++....|.+      ..|     -.++|+.||-|||.-+
T Consensus       109 aGakifn~~~vEDvi~--r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda  165 (230)
T PF01946_consen  109 AGAKIFNLTSVEDVIV--REDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA  165 (230)
T ss_dssp             TTEEEEETEEEEEEEE--ECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred             CCCEEEeeeeeeeeEE--EcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence            9999999999999987  53233333332      122     1799999999999755

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=2.2e-10  Score=113.05  Aligned_cols=191  Identities=16%  Similarity=0.126  Sum_probs=100.5

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      +...+||+|||+|+||++||+.+++. .+|+|+||....++  ++....+.+.....  .......      .+......
T Consensus         2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g--~s~~a~Ggi~a~~~~~~~D~~e~------~~~d~~~~   72 (583)
T PRK08205          2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS--HTGAAQGGMCAALANVEEDNWEW------HTFDTVKG   72 (583)
T ss_pred             cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC--CchhhhcchhhcccCCCCCCHHH------HHHHHHHh
Confidence            34578999999999999999999986 89999999876533  22222222221111  0000000      11111111


Q ss_pred             hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHH-HHHHHcCCcccCC----CCeEEEEecCCceeChHHHH
Q 015088           82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR-QVLEKYSGRIEIP----ENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  156 (413)
                       +.. ......+   ..-.+...+.++++..+|+++...... .....++. ....    ......+..   -.....+.
T Consensus        73 -g~~-~~d~~~v---~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~~~~~~~r~~~~~---~~tG~~i~  143 (583)
T PRK08205         73 -GDY-LVDQDAA---EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGG-HTRDHGKAPVRRACYAA---DRTGHMIL  143 (583)
T ss_pred             -hcC-CCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCceeeccccc-ccccccCCCccceeccC---CCCHHHHH
Confidence             000 0000000   000011234566777788776432111 11111121 0000    000111111   01245788


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccC---CCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAV---KGGVTV---VTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~---~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ..|.+.+++.|+++++++.|++|..  +++   +.+..+   ...+|+  .+.|+.||+|||+++.
T Consensus       144 ~~L~~~~~~~gv~i~~~~~v~~Li~--~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        144 QTLYQNCVKHGVEFFNEFYVLDLLL--TETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEe--cCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            8899989889999999999999987  531   233333   234554  5889999999999774

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.29  E-value=8.5e-11  Score=115.87  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=50.6

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeE--EEEcCCCc-EEEc-CEEEEcCCCChH
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGV--TVVTSNGE-KFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~-~i~a-d~VV~A~G~~s~  214 (413)
                      ...++..++..|.+.+++.|++|+++++|++|..  ++ +..+  .+.+.++. ++++ +.||+|+|+|+.
T Consensus       212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~--~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLR--ED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            4567788999999999999999999999999987  63 3333  33444443 5889 999999999985

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=2.7e-10  Score=112.35  Aligned_cols=192  Identities=14%  Similarity=0.100  Sum_probs=98.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHH-HHHHHHHHhC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCL-LWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~   83 (413)
                      +..+||+|||+|.||++||+.+++.|.+|+||||....++  .+....+.+.......  .   ..+.+ .+...... +
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g--~t~~a~Ggi~~~~~~~--~---~ds~~~~~~dt~~~-g   81 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS--HTVAAQGGIGASLGNM--S---EDNWHYHFYDTIKG-S   81 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhccCCcccccccc--c---ccChhHhHHHHHHh-c
Confidence            3468999999999999999999999999999999866543  2222222221111100  0   00000 11111111 0


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccC----CCCeEEEEecCCceeChHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEI----PENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      .. ......+.   .-.+...+.++++..+|+++.......+ ...+.+ -..    .......+..   --....+...
T Consensus        82 ~~-~~d~~~v~---~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg-~s~~~~~~~~~r~~~~~---~~tG~~l~~~  153 (591)
T PRK07057         82 DW-LGDQDAIE---FMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGG-HTANYGEKPVQRACAAA---DRTGHALLHT  153 (591)
T ss_pred             CC-CCCHHHHH---HHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCC-ccccccCCccceeeecC---CCChHHHHHH
Confidence            00 00000000   0001113345556667776532111000 000111 000    0000111111   1123567888


Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      |.+.+.+.|++++.++.++++..  ++++....+.   ..+|+  .+.++.||+|||+++.
T Consensus       154 L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        154 LYQQNVAAKTQFFVEWMALDLIR--DADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHhcCCEEEeCcEEEEEEE--cCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence            88888889999999999999987  5333344443   33554  6789999999999764

>PLN02612 phytoene desaturase

Probab=99.28  E-value=8e-09  Score=101.52  Aligned_cols=59  Identities=14%  Similarity=0.039  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+++.|.+.+++.|++|+++++|++|..  ++++..+.+++.+|+++++|+||+|+....
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~  366 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNGSVVEGDVYVSATPVDI  366 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCCcEEECCEEEECCCHHH
Confidence            56888888888889999999999999987  643345567777888899999999997643

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=6.6e-11  Score=117.36  Aligned_cols=185  Identities=14%  Similarity=0.115  Sum_probs=97.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      ..+||+|||+|+||++||+.+++.|.+|+||||....++  +|....|.+.....    .......       +.+..+.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~ds~~~~-------~~D~~~~   77 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMGNVNPKDNWQVH-------FRDTMRG   77 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeeccCCCCCCCHHHH-------HHHHHHH
Confidence            468999999999999999999999999999999876543  22222222221111    1111111       1111111


Q ss_pred             hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      -..  ......+..   -.+.....+.++..+|+++.......+. ..++.    .......+..   .-....++..|.
T Consensus        78 g~~--l~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~---~~tG~~i~~~L~  145 (626)
T PRK07803         78 GKF--LNNWRMAEL---HAKEAPDRVWELETYGALFDRTKDGRISQRNFGG----HTYPRLAHVG---DRTGLELIRTLQ  145 (626)
T ss_pred             hcc--CCcHHHHHH---HHHHhHHHHHHHHHCCCceEecCCCceeeeecCC----cccCeEEecC---CCcHHHHHHHHH
Confidence            000  000000000   0001123344566677765432111110 00111    0000111111   112356778888


Q ss_pred             HHHHHC--------C-----CEEEcCceEEEEEEecccCCCeEEE---EcCCCc--EEEcCEEEEcCCCChH
Q 015088          161 TLAIKN--------G-----AVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       161 ~~~~~~--------G-----v~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.+++.        |     +++++++.|+++..  ++ +....+   ...+|+  .+.|+.||+|||++..
T Consensus       146 ~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~--~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  214 (626)
T PRK07803        146 QKIVSLQQEDHAELGDYEARIKVFAECTITELLK--DG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIGK  214 (626)
T ss_pred             HHHHhhhccccccccCCcCceEEEeCCEEEEEEE--EC-CEEEEEEEEECCCCeEEEEEcCeEEECCCcccC
Confidence            877766        6     99999999999987  63 233322   234554  6899999999998653

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.28  E-value=3.4e-09  Score=102.59  Aligned_cols=47  Identities=32%  Similarity=0.389  Sum_probs=41.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcccCCCc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~~~~~   53 (413)
                      +.||+|||||++|+++|++|+++    |++|+|+|+++..||+..+....+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g   52 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDG   52 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCC
Confidence            36899999999999999999998    999999999999998877654433

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02815 L-aspartate oxidase

Probab=99.28  E-value=1.6e-10  Score=113.24  Aligned_cols=186  Identities=13%  Similarity=0.109  Sum_probs=97.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||+|.||++||+.+++.| +|+||||....++.+. ...+++............       ++.+.... +..
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~-~a~Ggi~a~~~~~Ds~e~-------~~~d~~~~-g~~   97 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTN-YAQGGVSAVLDPSDSVES-------HMRDTIVA-GAF   97 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHH-HhhcccccCCCCCCCHHH-------HHHHHHHh-ccC
Confidence            4589999999999999999999999 9999999987654221 122222111111111111       11121111 000


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                       ......+   ..-.+...+.++++..+|+++..-....+ ......    .......+.   +-.....+...|.+.++
T Consensus        98 -~~d~~lv---~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg----~s~~R~~~~---~d~tG~~i~~~L~~~~~  166 (594)
T PLN02815         98 -LCDEETV---RVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGG----HSHHRIVHA---ADMTGREIERALLEAVK  166 (594)
T ss_pred             -CCcHHHH---HHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCC----CccCceeec---CCCCHHHHHHHHHHHHH
Confidence             0000000   00001113445666677776532110000 000110    000011111   11133567788888887


Q ss_pred             HC-CCEEEcCceEEEEEEecccCCC---eEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          165 KN-GAVLRDNMEVKTVLKVKDAVKG---GVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~-Gv~i~~~~~V~~i~~~~~~~~~---~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +. |+++++++.+++|..  +++++   ++.+.   ..+|+  .+.|+.||+|||++..
T Consensus       167 ~~~~i~i~~~~~~~~Li~--~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        167 NDPNITFFEHHFAIDLLT--SQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             hcCCCEEEeceEhheeee--ecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            65 899999999999987  53222   34443   34564  6789999999998764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.28  E-value=3.9e-09  Score=101.66  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=37.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +|+|||||++|+++|++|+++|++|+|+|++...||...+.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   41 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSW   41 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeee
Confidence            58999999999999999999999999999999988776654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=99.27  E-value=2.9e-10  Score=111.43  Aligned_cols=59  Identities=27%  Similarity=0.417  Sum_probs=44.6

Q ss_pred             eeChHHHHHHHHHHHHHCCC-EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKNGA-VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv-~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.-..+.+.|.+.+   +. .++++++|++++.  +  ++.+.+.+.+|+++++|.||.|.|.+|.
T Consensus       190 ~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~--~--~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        190 VISRMTLQQILARAV---GEDVIRNESNVVDFED--S--GDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             EEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEE--e--CCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            344456666665433   33 3678899999987  6  4678888888888999999999999984

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.27  E-value=1.3e-10  Score=113.40  Aligned_cols=186  Identities=14%  Similarity=0.075  Sum_probs=96.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +..+||+|||+|+||++||+.++ .|.+|+||||....++. +....+++...........       ..+.++.+....
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~-s~~a~Ggi~a~~~~~ds~e-------~~~~d~~~~g~~   77 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA-SDWAQGGIAAAIAPDDSPK-------LHYEDTLKAGAG   77 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc-hhhhcccceecccCCCCHH-------HHHHHHHHhcCC
Confidence            45689999999999999999996 49999999999876432 2222222221111111111       112222111100


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .  .....+   ..-.+.....++++..+|+++...........+..    .......+...   -....+...|.+.++
T Consensus        78 ~--~d~~lv---~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g----~s~~r~~~~~d---~~G~~i~~~L~~~~~  145 (553)
T PRK07395         78 L--CDPEAV---RFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAA----HSRPRVLHAAD---TTGRAIVTTLTEQVL  145 (553)
T ss_pred             C--CCHHHH---HHHHHHHHHHHHHHHhcCCeeecCCCceeeecccc----cccCeEEEeCC---CChHHHHHHHHHHHh
Confidence            0  000000   00001123455666677776532110000000011    00111111111   023567788888877


Q ss_pred             HC-CCEEEcCceEEEEEEecccC-CCeEEEEc-CCCc--EEEcCEEEEcCCCCh
Q 015088          165 KN-GAVLRDNMEVKTVLKVKDAV-KGGVTVVT-SNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       165 ~~-Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~-~~g~--~i~ad~VV~A~G~~s  213 (413)
                      +. |+++++++.|+++..  +++ +..+.+.. .+|+  .+.|+.||+|||++.
T Consensus       146 ~~~gi~i~~~~~v~~Li~--~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        146 QRPNIEIISQALALSLWL--EPETGRCQGISLLYQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             hcCCcEEEECcChhhhee--cCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence            65 999999999999987  531 23333332 3454  478999999999964

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.27  E-value=1e-10  Score=111.53  Aligned_cols=67  Identities=22%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHCCCE--EEcCceEEEEEEecccCCCeEEEEcCCC--c--EEEcCEEEEcCCCChHHhhhhhcC
Q 015088          152 PTKAVSMFQTLAIKNGAV--LRDNMEVKTVLKVKDAVKGGVTVVTSNG--E--KFWGKKCVVTAGAWVGKLVKRITG  222 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~--~i~ad~VV~A~G~~s~~l~~~~~g  222 (413)
                      ...+.+.|...++..|+.  |+++++|+++..  .  ++.|.|++.++  .  +..+|.||+|+|.++.+..+.+.|
T Consensus       110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~--~--~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG  182 (461)
T PLN02172        110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEP--V--DGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPG  182 (461)
T ss_pred             HHHHHHHHHHHHHHcCCcceEEecCEEEEEee--c--CCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcCCCCCC
Confidence            367888999999998987  899999999988  6  46788877532  2  457899999999876554444433

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.27  E-value=2.4e-10  Score=112.59  Aligned_cols=186  Identities=12%  Similarity=0.042  Sum_probs=96.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||+|+||++||+.+++.  |.+|+||||....++  ++....+.+..........+      ..+....+. +
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g--~s~~a~Gg~~~~~~~~ds~e------~~~~d~~~~-g   73 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS--HTVAAEGGSAAVAQDHDSFD------YHFHDTVAG-G   73 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC--ChhhccchhhhhcCCCCCHH------HHHHHHHHh-c
Confidence            468999999999999999999987  479999999876543  22222222211111100000      111111111 0


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      .. ..+...+.   .-.+.....++++..+|+++..-....+ ...++.    .......+...   -....+...|.+.
T Consensus        74 ~~-~~d~~~v~---~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~~---~~G~~i~~~L~~~  142 (582)
T PRK09231         74 DW-LCEQDVVE---YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGG----MKIERTWFAAD---KTGFHMLHTLFQT  142 (582)
T ss_pred             cc-CCCHHHHH---HHHHHHHHHHHHHHHcCCCcccCCCCceeeecccc----ccCCeeEecCC---CcHHHHHHHHHHH
Confidence            00 00000000   0001113455666778877542111111 011111    00011111111   0134577777777


Q ss_pred             HHHC-CCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.+. +++++.++.++++..  +++ ....   +...+|+  .+.|+.||+|+|+++.
T Consensus       143 ~~~~~~i~i~~~~~v~~Li~--~~g-~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        143 SLKYPQIQRFDEHFVLDILV--DDG-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             hhcCCCcEEEeCeEEEEEEE--eCC-EEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence            7665 899999999999987  632 2222   3345664  6899999999999774

>PRK07236 hypothetical protein; Provisional

Probab=99.26  E-value=1.4e-10  Score=109.36  Aligned_cols=55  Identities=11%  Similarity=-0.014  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.|.+.+  .+++++++++|++++.  +  ++.+.+...+|+++++|.||.|.|.+|.
T Consensus       101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        101 VLYRALRAAF--PAERYHLGETLVGFEQ--D--GDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            3444444332  3578999999999988  6  4568888888888999999999999884

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.26  E-value=2e-09  Score=100.42  Aligned_cols=48  Identities=29%  Similarity=0.344  Sum_probs=41.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceee
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIR   56 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~   56 (413)
                      .|+|||||++||++||+|.+++  .+|+|+|+++..||...|....+...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~   51 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLF   51 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEE
Confidence            5999999999999999999999  99999999999988877765555443

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.26  E-value=1.6e-10  Score=112.18  Aligned_cols=187  Identities=14%  Similarity=0.062  Sum_probs=95.8

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      .+.++||+|||+|+||++||+.++  +.+|+||||.....+..+....+++...........       ..+.++.+...
T Consensus         6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~~~   76 (513)
T PRK07512          6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPA-------LHAADTLAAGA   76 (513)
T ss_pred             cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHH-------HHHHHHHHhhC
Confidence            356799999999999999999996  579999999886322222222222211111111111       11112211100


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ..  .+...+   ..-.+...+.++++.++|+++..-...... .....    .......+..  +.-.+..+...|.+.
T Consensus        77 g~--~d~~~v---~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~----~~~~r~~~~~--g~~~G~~l~~~L~~~  145 (513)
T PRK07512         77 GL--CDPAVA---ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAA----HSRRRIVHVG--GDGAGAAIMRALIAA  145 (513)
T ss_pred             CC--CCHHHH---HHHHHHHHHHHHHHHHhCCccccCCCCccccccccC----ccCCcEEEcC--CCCCHHHHHHHHHHH
Confidence            00  000000   000011234556667777765321100000 00000    0000111111  111345788888888


Q ss_pred             HHHC-CCEEEcCceEEEEEEecccCCCeEEEEc--CCCc-EEEcCEEEEcCCCCh
Q 015088          163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE-KFWGKKCVVTAGAWV  213 (413)
Q Consensus       163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~-~i~ad~VV~A~G~~s  213 (413)
                      +++. |++++.++.|+++..  ++ +..+.+..  .++. .+.|+.||+|||++.
T Consensus       146 ~~~~~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        146 VRATPSITVLEGAEARRLLV--DD-GAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHhCCCCEEEECcChhheee--cC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            8775 899999999999876  53 33344433  2332 589999999999975

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.26  E-value=2e-09  Score=101.46  Aligned_cols=59  Identities=12%  Similarity=-0.063  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.|.+.+.+.|++++++++++.+..  .+ +..+.|... +|+  ++++|.||.|.|.+|.
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~--~~-~~~~~V~~~~~g~~~~i~adlvIGADG~~S~  164 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHD--LA-GDRPYVTFERDGERHRLDCDFIAGCDGFHGV  164 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEe--cC-CCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence            45667787878778999999998888754  32 233344443 564  6899999999999884

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.26  E-value=2.4e-10  Score=112.66  Aligned_cols=185  Identities=14%  Similarity=0.080  Sum_probs=96.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC----CCChHHHHHHHHHHHHHHHHHh
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP----EDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      ++||+|||+|+||++||+.+++.|.+|+||||....++  ++....+.+.....    ......+       +....+. 
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~~~~~~Ds~e~~-------~~d~~~~-   72 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS--HSVCAQGGINGAVNTKGEGDSPWIH-------FDDTVYG-   72 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC--cccccCCCeEEecCcCCCCCCHHHH-------HHHHHHh-
Confidence            57999999999999999999999999999999987543  22222222221111    1111111       1111111 


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      +.. ......+..   -.+...+.++++..+|+++.......+ ...+..    .......+   .+......+...|.+
T Consensus        73 g~~-~~d~~~v~~---~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~---~~~~tG~~i~~~L~~  141 (589)
T PRK08641         73 GDF-LANQPPVKA---MCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGG----TLHHRTAF---AGATTGQQLLYALDE  141 (589)
T ss_pred             cCC-cCCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCC----eecccccc---cCCCcHHHHHHHHHH
Confidence            000 000000000   001112445666667776532110000 000010    00000011   111234567788887


Q ss_pred             HHHHCC----CEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088          162 LAIKNG----AVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       162 ~~~~~G----v~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .+++.+    ++++.++.++++..  ++++.++.|..   .+++  .+.|+.||+|||++..
T Consensus       142 ~~~~~~~~~~i~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        142 QVRRYEVAGLVTKYEGWEFLGAVL--DDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             HHHhhhccCCcEEEeeEEEEEEEE--CCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            776543    88999999999887  53334444432   2344  5789999999999774

>PRK07208 hypothetical protein; Provisional

Probab=99.25  E-value=4.1e-10  Score=109.40  Aligned_cols=46  Identities=33%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~   51 (413)
                      ++.||+|||||++|+++|++|+++|++|+|+|+++..||...+...
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~   48 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY   48 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc
Confidence            4679999999999999999999999999999999999887665443

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=99.25  E-value=1.9e-09  Score=96.79  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      +.+|+|||||++|+++|..|.++|++|+|+|++..+.+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            358999999999999999999999999999998776433

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.25  E-value=3e-10  Score=109.23  Aligned_cols=175  Identities=14%  Similarity=0.037  Sum_probs=94.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      +||+|||+|++|++||+.+++.|.+|+||||....   +++....+.+..... ......       .+.+..+... . 
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~---~~s~~a~ggi~~~~~~~ds~e~-------~~~d~~~~~~-~-   69 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK---SNSYLAQAGIAFPILEGDSIRA-------HVLDTIRAGK-Y-   69 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC---CCcHHHcCCcccccCCCCcHHH-------HHHHHHHHhc-C-
Confidence            69999999999999999999999999999998532   122111121111110 010011       1111111100 0 


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                      ......+.   .-.+...+.++++..+|+++....      ..+.     ..+...+...  ......+.+.|.+.+++.
T Consensus        70 ~~d~~~v~---~~~~~~~~~i~~L~~~Gv~f~~~~------~~~g-----~~~~r~~~~~--~~~G~~i~~~L~~~~~~~  133 (466)
T PRK08401         70 INDEEVVW---NVISKSSEAYDFLTSLGLEFEGNE------LEGG-----HSFPRVFTIK--NETGKHIIKILYKHAREL  133 (466)
T ss_pred             CCCHHHHH---HHHHHHHHHHHHHHHcCCCcccCC------CcCC-----ccCCeEEECC--CCchHHHHHHHHHHHHhc
Confidence            00000000   000111344556667777643210      0111     0011111111  112356888899999999


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~  215 (413)
                      |++++.. .++++..  ++ +..+.+.+ +++.+.++.||+|||+++..
T Consensus       134 gv~i~~~-~v~~l~~--~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        134 GVNFIRG-FAEELAI--KN-GKAYGVFL-DGELLKFDATVIATGGFSGL  177 (466)
T ss_pred             CCEEEEe-EeEEEEe--eC-CEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence            9999865 7888876  52 24444555 45569999999999998864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.25  E-value=3.5e-10  Score=111.09  Aligned_cols=186  Identities=13%  Similarity=0.074  Sum_probs=97.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||+|+||++||+.+++.  |.+|+||||....++.  +....+.+..........+      .++.+..+. +
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~--s~~a~Gg~~~~~~~~ds~e------~~~~dt~~~-g   72 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH--TVAAEGGSAAVTGDDDSLD------EHFHDTVSG-G   72 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC--chhcCCchhhhcCCCCCHH------HHHHHHHHh-c
Confidence            368999999999999999999987  5899999999776432  2111122211111111000      111111111 1


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      .. ......+.   .-.+...+.++++.++|+++.......+ ...++.    .......+...   -....+.+.|.+.
T Consensus        73 ~~-~~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~~~~---~~G~~i~~~L~~~  141 (580)
T TIGR01176        73 DW-LCEQDVVE---YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGG----MKKERTWFAAD---KTGFHMLHTLFQT  141 (580)
T ss_pred             CC-cCcHHHHH---HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCC----ccCCeeeecCC---CCHHHHHHHHHHH
Confidence            00 00000000   0001113445566777776543211100 011111    00011111111   1235678888887


Q ss_pred             HHHC-CCEEEcCceEEEEEEecccCCCeEE---EEcCCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKN-GAVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.+. +++++.++.++++..  ++ +....   +...+|+  .+.|+.||+|||+++.
T Consensus       142 ~~~~~~i~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       142 SLTYPQIMRYDEWFVTDLLV--DD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HHhcCCCEEEeCeEEEEEEe--eC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            7764 899999999999987  63 23332   2334664  6889999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.25  E-value=1.1e-10  Score=111.54  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=99.1

Q ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCeeEEee
Q 015088           12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKVYFKA   90 (413)
Q Consensus        12 IIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   90 (413)
                      |||+|++|++||++++++|.+|+||||.......+.+.. ++.+...... ..+.........+++++.+..+.......
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l   79 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL   79 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence            799999999999999999999999999875311122211 1111111100 00000001112344444433221100000


Q ss_pred             ceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCCEE
Q 015088           91 HQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVL  170 (413)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i  170 (413)
                      ...     -.+...+..+++.++|+++......    ..+.      .....+...    ....+++.|.+.+++.|++|
T Consensus        80 ~~~-----~~~~s~~~i~wl~~~Gv~f~~~~~g----~~~~------~~~~~~~~~----~g~~l~~~L~~~a~~~Gv~i  140 (432)
T TIGR02485        80 SRL-----GIGRGSRDLRWAFAHGVHLQPPAAG----NLPY------SRRTAFLRG----GGKALTNALYSSAERLGVEI  140 (432)
T ss_pred             HHH-----HHhcchhHHHHHHhCCceeeecCCC----Cccc------cCceeeecC----CHHHHHHHHHHHHHHcCCEE
Confidence            000     0011134556667777765422100    0010      001111111    23568889999999999999


Q ss_pred             EcCceEEEEEEeccc-CCCeEEEEcC-CCcEEEcCEEEEcCCCChH--Hhhhh
Q 015088          171 RDNMEVKTVLKVKDA-VKGGVTVVTS-NGEKFWGKKCVVTAGAWVG--KLVKR  219 (413)
Q Consensus       171 ~~~~~V~~i~~~~~~-~~~~~~v~~~-~g~~i~ad~VV~A~G~~s~--~l~~~  219 (413)
                      +++++|++|..  ++ ++..+.+.+. ++.++.++.||+|+|++..  +++..
T Consensus       141 ~~~~~v~~l~~--~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       141 RYGIAVDRIPP--EAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             EeCCEEEEEEe--cCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            99999999987  52 2334445443 3347999999999998764  44443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.25  E-value=8.8e-11  Score=113.93  Aligned_cols=184  Identities=14%  Similarity=0.137  Sum_probs=95.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      .+||+|||+|.||++||+.+++ |.+|+||||....++. +....+++...........       ..+..+.+....  
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~-s~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~g~~--   71 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN-SHLAQGGIAAAVATYDSPN-------DHFEDTLVAGCH--   71 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC-chhcCccceecccCCCCHH-------HHHHHHHHhccC--
Confidence            6899999999999999999976 8999999999876432 2122222211111111111       111222111000  


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ..+...+   ..-.+.....++++.++|+++..-....+ ......    .......+ . .+...+..+.+.|.+.++ 
T Consensus        72 ~~d~~~v---~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~-~-~gd~~g~~i~~~L~~~~~-  141 (510)
T PRK08071         72 HNNERAV---RYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGA----HRKRRILH-A-GGDATGKNLLEHLLQELV-  141 (510)
T ss_pred             cCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcC----ccCCeEEe-c-CCCCcHHHHHHHHHHHHh-
Confidence            0000000   00001113445566667776532110000 000000    00001111 1 122234567888888775 


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEE--cCCCc--EEEcCEEEEcCCCChH
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .|+++++++.|+++..  ++ +....+.  ..+|+  .+.|+.||+|||+++.
T Consensus       142 ~gV~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        142 PHVTVVEQEMVIDLII--EN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             cCCEEEECeEhhheee--cC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence            6999999999999977  53 2333343  33443  6889999999999774

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.24  E-value=2e-10  Score=108.40  Aligned_cols=60  Identities=18%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+...|++++++++|.+|..  ++++..+.|++.+|++++|+.||.....+..
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~--~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVF--DENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEE--cCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            67889999999999999999999999987  6434567889999988999999987776643

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.23  E-value=1.8e-10  Score=106.50  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCC-hHHhhhhh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAW-VGKLVKRI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~-s~~l~~~~  220 (413)
                      .++.+.|.+.++++|++++.+++|.++..  ++ +....+.+.++  ..++||+||+|+|+| +..+.+.+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~--~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEF--EG-NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEe--eC-CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            67788999999999999999999999987  62 24455666665  369999999999999 88888776

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.23  E-value=6.3e-10  Score=107.45  Aligned_cols=58  Identities=21%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEG--G--DDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEE--e--CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence            45677888888899999999999999987  5  3456676777778999999999998654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.23  E-value=9.3e-12  Score=118.28  Aligned_cols=145  Identities=21%  Similarity=0.259  Sum_probs=38.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeEE
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYF   88 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (413)
                      ||||||||++|++||+.+++.|.+|+|||+...+||..++.+.... ..    .....  ......+.++.+....    
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~-~~----~~~~~--~~~~gi~~e~~~~~~~----   69 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPF-DG----NHDED--QVIGGIFREFLNRLRA----   69 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EE-TT----EEHHH--HHHHHHHHHHHHST------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCCh-hh----cchhh--ccCCCHHHHHHHHHhh----
Confidence            8999999999999999999999999999999998775544332211 11    00001  1112222232222110    


Q ss_pred             eeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCC
Q 015088           89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGA  168 (413)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv  168 (413)
                                              .+..    . ..  .        ...+     .....++|..+...+.+.+.+.|+
T Consensus        70 ------------------------~~~~----~-~~--~--------~~~~-----~~~~~~~~~~~~~~l~~~l~e~gv  105 (428)
T PF12831_consen   70 ------------------------RGGY----P-QE--D--------RYGW-----VSNVPFDPEVFKAVLDEMLAEAGV  105 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------hccc----c-cc--c--------cccc-----cccccccccccccccccccccccc
Confidence                                    0000    0 00  0        0000     000344566667777777888899


Q ss_pred             EEEcCceEEEEEEecccCCCeEEEEc--CCCc-EEEcCEEEEcCCC
Q 015088          169 VLRDNMEVKTVLKVKDAVKGGVTVVT--SNGE-KFWGKKCVVTAGA  211 (413)
Q Consensus       169 ~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g~-~i~ad~VV~A~G~  211 (413)
                      ++++++.|.++..  ++ +..+.|.+  .+|. +++|+.||.|||-
T Consensus       106 ~v~~~t~v~~v~~--~~-~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen  106 EVLLGTRVVDVIR--DG-GRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ----------------------------------------------
T ss_pred             ccccccccccccc--cc-cccccccccccccccccccccccccccc
Confidence            9999999999988  73 24444444  3344 7999999999995

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.22  E-value=5e-09  Score=101.28  Aligned_cols=45  Identities=31%  Similarity=0.465  Sum_probs=39.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCcccCCCc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~------g~~V~liE~~~~~gg~~~s~~~~~   53 (413)
                      +|+|||||++|++||++|++.      |++|+|+|+++..||+..|....+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g   53 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD   53 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC
Confidence            699999999999999999986      379999999999999877765433

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.22  E-value=9.4e-10  Score=107.56  Aligned_cols=186  Identities=14%  Similarity=0.118  Sum_probs=96.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      +..+||+|||+|+||++||+.+++. .+|+||||....++  ++....+.+...... ....       ..++.......
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g--~t~~a~Ggi~~~~~~~ds~e-------~~~~d~~~~g~   75 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG--STFYAQGGIAAVLDETDSIE-------SHVEDTLIAGA   75 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC--ChhhccCCeeeccCCCccHH-------HHHHHHHHHcc
Confidence            4568999999999999999999986 89999999887543  222222222211111 1111       11111111100


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHH----HH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCR----QV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                       . ......+   ..-.+...+.++++..+|+++......    .. ...++.     ......+...  .-....+...
T Consensus        76 -~-~~d~~~v---~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg-----~~~~r~~~~~--~~~G~~i~~~  143 (536)
T PRK09077         76 -G-LCDEDAV---RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGG-----HSHRRILHAA--DATGKAVQTT  143 (536)
T ss_pred             -C-CCCHHHH---HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCC-----ccCCceEecC--CCCHHHHHHH
Confidence             0 0000000   000011134456667777765332100    00 000110     0000111111  1123467777


Q ss_pred             HHHHHHHC-CCEEEcCceEEEEEEeccc-----CCCeEEEE--c-CCCc--EEEcCEEEEcCCCChH
Q 015088          159 FQTLAIKN-GAVLRDNMEVKTVLKVKDA-----VKGGVTVV--T-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~~-Gv~i~~~~~V~~i~~~~~~-----~~~~~~v~--~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      |.+.+.+. |+++++++.|+++..  ++     ++..+.+.  . .+|+  .+.++.||+|+|+++.
T Consensus       144 L~~~~~~~~~I~v~~~~~v~~Li~--~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        144 LVERARNHPNITVLERHNAIDLIT--SDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             HHHHHHhCCCcEEEeeEEeeeeee--cccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence            88777765 899999999999876  53     12334343  2 3454  6889999999999774

>PLN02576 protoporphyrinogen oxidase

Probab=99.21  E-value=6.4e-09  Score=101.51  Aligned_cols=49  Identities=39%  Similarity=0.465  Sum_probs=43.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCcccCCCc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg~~~s~~~~~   53 (413)
                      ..++||+|||||++||++|++|+++ |++|+|+|+++..||+..+....+
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g   59 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDG   59 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCC
Confidence            3467999999999999999999999 999999999999999877765444

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.20  E-value=5.6e-10  Score=110.20  Aligned_cols=183  Identities=14%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc----CCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY----PEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      |+|||+|+||++||+.+++.|.+|+||||....++ +++....+.+....    .....       ...+..+.+.....
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~-g~s~~a~Ggi~a~~~~~~~~ds~-------e~~~~d~~~~g~~~   72 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR-AHSIAAQGGINGAVNTKGDGDSP-------WRHFDDTVKGGDFR   72 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC-ccchhhhhhhhhhcccCCCCCCH-------HHHHHHHHHhcCCC
Confidence            68999999999999999999999999999873322 22211111111100    01100       11122221110000


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                        .....+.   .-.......++++..+|+++........ ...++.    .......+...   -....+...|.+.++
T Consensus        73 --~d~~lv~---~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~R~~~~~~---~tG~~i~~~L~~~~~  140 (603)
T TIGR01811        73 --ARESPVK---RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGG----VQVSRTAYARG---QTGQQLLLALDSALR  140 (603)
T ss_pred             --CCHHHHH---HHHHHHHHHHHHHHHcCCEEEecCCCccccccccC----cccCcceecCC---CChhHHHHHHHHHHH
Confidence              0000000   0001113455666777776532110000 011111    00011111111   012345555555444


Q ss_pred             H----CCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088          165 K----NGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~----~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +    .|++++++++|++|..  ++++.++.|..   .+|+  .+.|+.||+|||+++.
T Consensus       141 ~~~~~~gV~i~~~t~v~~Li~--dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  197 (603)
T TIGR01811       141 RQIAAGLVEKYEGWEMLDIIV--VDGNRARGIIARNLVTGEIETHSADAVILATGGYGN  197 (603)
T ss_pred             hhhccCCcEEEeCcEEEEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcC
Confidence            3    4899999999999987  53334444442   2454  6889999999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.20  E-value=3e-10  Score=103.37  Aligned_cols=56  Identities=23%  Similarity=0.270  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|+++++ ++|+++..  .  ++.+.+.+.+++++++|+||+|+|.+.
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~--~--~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDL--S--DRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEe--c--CCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence            35666777778888999998 89999987  6  467788887777899999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12839 hypothetical protein; Provisional

Probab=99.20  E-value=6.4e-10  Score=109.10  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=48.7

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEE--EcCCCc-EEE-cCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTV--VTSNGE-KFW-GKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v--~~~~g~-~i~-ad~VV~A~G~~s~  214 (413)
                      .+++..++..|.+.+++.|++|+.++.|++|..  ++++.++.|  ...+++ .+. ++.||+|+|+++.
T Consensus       210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~--~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTT--DKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            346788899999999999999999999999976  533344444  444555 344 4899999999885

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.19  E-value=3.3e-10  Score=108.94  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +++|+..+...+.+.+++. +++++ ...|+++..  ++++..+.|.+.+|..+.|+.||+|+|.|.
T Consensus        91 aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~--e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        91 AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLIL--EDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--ecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence            6889999999999999888 78887 557888866  433467788888888899999999999994

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.19  E-value=5.4e-10  Score=110.02  Aligned_cols=40  Identities=38%  Similarity=0.497  Sum_probs=36.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      +.++||||||+|.+|+++|+.++++|.+|+||||....++
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            3579999999999999999999999999999999987654

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.18  E-value=8.4e-10  Score=106.37  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-----EEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-----KFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~VV~A~G~~s  213 (413)
                      +..+.+.+.+.+++.|++|+++++|++|..  .+++..+.+++.+|+     ++.||.||+|+.+..
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~--~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~  276 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVL--NEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI  276 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEE--CCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence            467788899999889999999999999986  533345556665543     689999999998743

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.18  E-value=7.8e-10  Score=100.79  Aligned_cols=48  Identities=42%  Similarity=0.580  Sum_probs=43.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~   51 (413)
                      ....+||||||+|++||++|++|.+.|++|+|+|.+++.||+..+...
T Consensus         4 p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           4 PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            456799999999999999999999999999999999999988766544

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.16  E-value=3e-10  Score=95.70  Aligned_cols=155  Identities=17%  Similarity=0.166  Sum_probs=86.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeEE
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVYF   88 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (413)
                      +|+|||+||+|++||+.|++.|.+|+|+||+.-.||+.+|....+.-                                +
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~--------------------------------~   50 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGR--------------------------------F   50 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCcc--------------------------------c
Confidence            69999999999999999999999999999998887776664332211                                0


Q ss_pred             eeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCCC
Q 015088           89 KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGA  168 (413)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv  168 (413)
                      +.|.-.+. ...+.+.+..+.+.+.|+- ...........-.+ .. +....   .+   ++-...+ ..|.+. .....
T Consensus        51 DhGAqYfk-~~~~~F~~~Ve~~~~~glV-~~W~~~~~~~~~~~-~~-~~~d~---~p---yvg~pgm-salak~-LAtdL  118 (331)
T COG3380          51 DHGAQYFK-PRDELFLRAVEALRDDGLV-DVWTPAVWTFTGDG-SP-PRGDE---DP---YVGEPGM-SALAKF-LATDL  118 (331)
T ss_pred             cccceeec-CCchHHHHHHHHHHhCCce-eeccccccccccCC-CC-CCCCC---Cc---cccCcch-HHHHHH-Hhccc
Confidence            01111111 1122233444444444432 11110000000000 00 00000   00   1111111 223332 23357


Q ss_pred             EEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCC
Q 015088          169 VLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGA  211 (413)
Q Consensus       169 ~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~  211 (413)
                      +|+++++|+.+..  .  ++.|++.+++|. ..++|.||+|.-.
T Consensus       119 ~V~~~~rVt~v~~--~--~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380         119 TVVLETRVTEVAR--T--DNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             hhhhhhhhhhhee--c--CCeeEEEecCCCcccccceEEEecCC
Confidence            8889999999998  7  689999996665 6789999999875

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.16  E-value=1.9e-09  Score=103.05  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s~   49 (413)
                      ..+|+|||||++|++||++|.+.    |.+|+|+|+.+..||...+.
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~   68 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGA   68 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCc
Confidence            47899999999999999999995    68999999999988876543

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.15  E-value=5.6e-10  Score=109.46  Aligned_cols=59  Identities=15%  Similarity=0.253  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcC-EEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGK-KCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad-~VV~A~G~~s~  214 (413)
                      ..+...|.+.+++.|++++++++|++|..  ++ +.++.|.. .+|+  ++.++ .||+|+|++..
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~--~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIV--ED-GRVVGVVVVRDGREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eC-CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence            56777888889999999999999999987  63 34444432 2343  57885 69999999875

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.15  E-value=2.9e-10  Score=103.88  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA  211 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~  211 (413)
                      .++|-..+.+.+.+.+++. +++++ +++|++|..  ++ +..+.|.+.+|+.+.+|.||+|||.
T Consensus        90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~--e~-~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV--EN-GKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE--CT-TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe--cC-CeEEEEEeCCCCEEecCEEEEeccc
Confidence            4677789999999999884 78887 789999987  63 4788899999999999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.14  E-value=6.3e-10  Score=109.21  Aligned_cols=44  Identities=34%  Similarity=0.525  Sum_probs=39.6

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      |.|.+.++||+|||+|++|+++|+.++++|.+|+||||....|+
T Consensus         1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG   44 (557)
T PRK07843          1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG   44 (557)
T ss_pred             CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence            56666789999999999999999999999999999999877654

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.14  E-value=2.4e-09  Score=105.25  Aligned_cols=39  Identities=49%  Similarity=0.612  Sum_probs=35.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC--CCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD--FLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~--~~gg   44 (413)
                      .++||+|||+|.+|++||+.+++.|.+|+||||..  ..||
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG   43 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG   43 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence            57999999999999999999999999999999998  4443

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.14  E-value=2.1e-09  Score=105.27  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEc-CEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~a-d~VV~A~G~~s~  214 (413)
                      ..+...|.+.+++.|++|+++++|++|..  ++ +.++.|.. .+|+  .+.+ +.||+|||++..
T Consensus       217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~  279 (564)
T PRK12845        217 QALAAGLFAGVLRAGIPIWTETSLVRLTD--DG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH  279 (564)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCEeeEEEe--cC-CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence            56778888889999999999999999987  63 34444432 2343  4666 579999999875

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.14  E-value=1.9e-09  Score=105.96  Aligned_cols=177  Identities=16%  Similarity=0.228  Sum_probs=91.9

Q ss_pred             cEEEECCCHHHHHHHHHHH----HcCCcEEEEcccCCCCCCCcccCCCce--eecccCCCChHHHHHHH-HHHHHHHHHH
Q 015088            9 DVIVVGAGIMGSSAAYQLA----KRGQKTLLLEQFDFLHHRGSSHGESRT--IRATYPEDYYHPMVLES-CLLWEQAQSE   81 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~----~~g~~V~liE~~~~~gg~~~s~~~~~~--~~~~~~~~~~~~l~~~~-~~~~~~~~~~   81 (413)
                      ||+|||||+||++||+.++    +.|.+|+||||....++ + +. ..|.  +........  .  ..+ ...++.....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s-~-s~-A~G~~gi~~~~~~~~--g--~Ds~e~~~~d~~~~   73 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERS-G-AV-AQGLSAINTYLGTRF--G--ENNAEDYVRYVRTD   73 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCC-C-cc-ccccchhhhhhhccc--C--CCCHHHHHHHHHHh
Confidence            8999999999999999998    67999999999876422 2 22 1121  111111000  0  000 1111111111


Q ss_pred             hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccC-HHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           82 IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD-CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      . .. ......+   ..-.+.....++++..+|+++.... ..... +       ....   ..    ......+.+.+.
T Consensus        74 ~-~g-l~d~~lV---~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~-~-------~g~~---~~----~~gG~~~~r~l~  133 (614)
T TIGR02061        74 L-MG-LVREDLI---FDMARHVDDSVHLFEEWGLPLWIKPEDGKYV-R-------EGRW---QI----MIHGESYKPIVA  133 (614)
T ss_pred             c-CC-CCcHHHH---HHHHHHHHHHHHHHHHcCCCceecCCCCccc-c-------CCCc---cc----CcCchhHHHHHH
Confidence            0 00 0000000   0000112355666667777654210 00000 0       0000   00    001234555666


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccC--CCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAV--KGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ..+++.+++++.++.|+++..  +++  +.++.|.   ..+|+  .+.|+.||+|||+|..
T Consensus       134 ~~l~~~~~~i~~~~~v~~Ll~--d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       134 EAAKNALGDIFERIFIVKLLL--DKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             HHHHhCCCeEEcccEEEEEEe--cCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            666777789999999999987  632  2343433   24554  6789999999999875

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.14  E-value=6.8e-10  Score=117.40  Aligned_cols=191  Identities=17%  Similarity=0.170  Sum_probs=98.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHH-HHHHHHHHH-HHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM-VLESCLLWE-QAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l-~~~~~~~~~-~~~~~~   82 (413)
                      +..+||||||+|.||++||+.+++.|.+|+||||....||...  ...+.+... ........ ...+.+.+. ..... 
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~--~s~ggi~~~-~t~~q~~~gi~D~~~~~~~d~~~~-  482 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA--KATSGINGW-GTRAQAKQDVLDGGKFFERDTHLS-  482 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh--hcccccccC-CchhhhhhcccccHHHHHHHHHHh-
Confidence            3469999999999999999999999999999999987754322  111111111 00000000 001111111 11110 


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecC--Ccee--ChHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATEL--GGVI--KPTKAVSM  158 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~  158 (413)
                      +...... ..  +...-.+...+.++|+.++|+++.....      ... .   ........+.  .+..  ....+.+.
T Consensus       483 ~~~~~~d-~~--lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg-~---~~~r~~~~~~~~~g~~~~~G~~i~~~  549 (1167)
T PTZ00306        483 GKGGHCD-PG--LVKTLSVKSADAISWLSSLGVPLTVLSQ------LGG-A---SRKRCHRAPDKKDGTPVPIGFTIMRT  549 (1167)
T ss_pred             ccCCCCC-HH--HHHHHHHhhHHHHHHHHHcCCCceeeec------cCC-C---CCCceeecCcccCCCcCCcHHHHHHH
Confidence            0000000 00  0000001113455667777776543210      111 0   0001111111  1111  12456677


Q ss_pred             HHHHHHH---CCCEEEcCceEEEEEEecccC----C----CeEEEE--cC---CCc--EEEcCEEEEcCCCChH
Q 015088          159 FQTLAIK---NGAVLRDNMEVKTVLKVKDAV----K----GGVTVV--TS---NGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~---~Gv~i~~~~~V~~i~~~~~~~----~----~~~~v~--~~---~g~--~i~ad~VV~A~G~~s~  214 (413)
                      |.+.+++   .|++|+++++++++..  +++    +    .++.|.  ..   +|+  .+.|+.||+|||++..
T Consensus       550 l~~~~~~~~~~gv~i~~~t~~~~LI~--d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        550 LEDHIRTKLSGRVTIMTETTVTSLLS--ESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             HHHHHHhhccCCcEEEECCEEEEEEe--cCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            7777665   4999999999999987  631    1    334443  32   554  6889999999999885

>PRK06116 glutathione reductase; Validated

Probab=99.13  E-value=5e-09  Score=100.80  Aligned_cols=58  Identities=22%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.+.+.+++.|++++++++|.+++.  +++ +.+.+.+.+|+++.+|.||+|+|...
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~-g~~~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEK--NAD-GSLTLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEE--cCC-ceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence            45677788888999999999999999987  522 33667777888899999999999754

>PLN02487 zeta-carotene desaturase

Probab=99.13  E-value=7.4e-08  Score=93.85  Aligned_cols=63  Identities=11%  Similarity=0.089  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCC-C---eEEEEc---CCCcEEEcCEEEEcCCCCh-HHhhh
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK-G---GVTVVT---SNGEKFWGKKCVVTAGAWV-GKLVK  218 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~---~~~v~~---~~g~~i~ad~VV~A~G~~s-~~l~~  218 (413)
                      .+.+.+.+.++++|++|++++.|.+|..  ++++ +   .+.|++   .+++.+.+|.||+|++.+. ..|++
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~--~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp  366 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILY--DKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLP  366 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEE--ecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCC
Confidence            4788899999999999999999999988  6321 2   345565   3344688999999999865 34443

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=8.2e-10  Score=98.83  Aligned_cols=59  Identities=25%  Similarity=0.308  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l  216 (413)
                      ...+.+.+.+.++..|+++.. ..|.+++.  .  ++.+.|+|.+++ ++|+.||+|+|.....+
T Consensus        60 g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~--~--~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          60 GPELMEQMKEQAEKFGVEIVE-DEVEKVEL--E--GGPFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             hHHHHHHHHHHHhhcCeEEEE-EEEEEEee--c--CceEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            357778888888888999986 77888877  5  228999999998 99999999999866433

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.12  E-value=9e-10  Score=104.63  Aligned_cols=66  Identities=24%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHCC--CEEEcCceEEEEEEecccCCCeEEEEcCCCcE--EEcCEEEEcCCCChHHhhhhhcCC
Q 015088          156 VSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEK--FWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       156 ~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~--i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      ...+...+++.+  .++.+++.|..+..  +++++.|.|+++++.+  +++|.||+|||.++.+..+.+.|.
T Consensus        85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~--~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~  154 (443)
T COG2072          85 KDYIKDYLEKYGLRFQIRFNTRVEVADW--DEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGL  154 (443)
T ss_pred             HHHHHHHHHHcCceeEEEcccceEEEEe--cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCc
Confidence            344455555554  45566677776666  5445799999988874  459999999999888777776554

>PTZ00367 squalene epoxidase; Provisional

Probab=99.12  E-value=3.1e-08  Score=96.62  Aligned_cols=35  Identities=43%  Similarity=0.626  Sum_probs=33.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999999999999999975

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.11  E-value=3.5e-09  Score=103.08  Aligned_cols=44  Identities=41%  Similarity=0.482  Sum_probs=40.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~   51 (413)
                      .||||||||++|++||..|+++|++|+|+|++..+||+..+...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~   45 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR   45 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc
Confidence            58999999999999999999999999999999999888776543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.10  E-value=7.8e-10  Score=105.51  Aligned_cols=64  Identities=14%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.++|-..+-+.|.+.+++.|++++.+ +|+++..  ++++....|++.+|++++||.||.|+|..+
T Consensus       148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~--~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVEL--DEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE---TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEE--cCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            467888999999999999999999976 5888877  644456789999999999999999999755

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.10  E-value=1.2e-09  Score=107.21  Aligned_cols=56  Identities=20%  Similarity=0.161  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++ +++|+++..  +  +..+.+.+.++. +.++.||+|+|++..
T Consensus        60 ~~l~~~l~~~~~~~gv~~~-~~~V~~i~~--~--~~~~~V~~~~g~-~~a~~lVlATGa~p~  115 (555)
T TIGR03143        60 PELMQEMRQQAQDFGVKFL-QAEVLDVDF--D--GDIKTIKTARGD-YKTLAVLIATGASPR  115 (555)
T ss_pred             HHHHHHHHHHHHHcCCEEe-ccEEEEEEe--c--CCEEEEEecCCE-EEEeEEEECCCCccC
Confidence            4566677777888899986 788988877  5  356677777775 899999999998653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06370 mercuric reductase; Validated

Probab=99.10  E-value=2.4e-09  Score=103.32  Aligned_cols=40  Identities=35%  Similarity=0.486  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      |..+|||+|||||++|+++|.+|+++|++|+|||+...+|
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG   41 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGG   41 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCC
Confidence            3346999999999999999999999999999999975543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.09  E-value=3.9e-09  Score=101.22  Aligned_cols=57  Identities=12%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~v~v~~~~g~-i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISH--H--ENQVQVHSEHAQ-LAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEEcCCe-EEeCEEEEeecCCcC
Confidence            56677888889999999999999999987  6  345667666665 899999999998764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.09  E-value=2.9e-09  Score=102.11  Aligned_cols=37  Identities=32%  Similarity=0.447  Sum_probs=33.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      +|||+|||||++|+++|..++++|++|+|+|+.. .||
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG   38 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGG   38 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCc
Confidence            5899999999999999999999999999999964 443

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.08  E-value=2.2e-09  Score=105.84  Aligned_cols=62  Identities=10%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEc-CEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWG-KKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~a-d~VV~A~G~~s~  214 (413)
                      .++..++..|.+.+++.|++++++++|+++..  ++ +....|... +++  .+.+ +.||+|+|++..
T Consensus       218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~--~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        218 VMGNALIGRLLYSLRARGVRILTQTDVESLET--DH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEe--eC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence            35667889999999999999999999999986  52 344444432 343  5776 689999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.08  E-value=4.1e-09  Score=101.64  Aligned_cols=40  Identities=38%  Similarity=0.507  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      +.+|||+|||||++|+.+|..|+++|++|+|||+.+..||
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG   41 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG   41 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence            3469999999999999999999999999999999755544

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.08  E-value=6.5e-09  Score=107.60  Aligned_cols=37  Identities=38%  Similarity=0.555  Sum_probs=34.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .++||+|||+|.+|+++|+.+++.|.+|+||||....
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~   48 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVR   48 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            4689999999999999999999999999999998763

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.08  E-value=7.3e-10  Score=107.22  Aligned_cols=192  Identities=20%  Similarity=0.184  Sum_probs=103.0

Q ss_pred             CCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC--hHHHHHHHHHHHHHHHH
Q 015088            3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESCLLWEQAQS   80 (413)
Q Consensus         3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~   80 (413)
                      ++..++||+|||||.||+.||..++++|.+|+|+||....+  +++....+.+........  ...   .-..++....+
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r--g~t~~a~gG~~a~~~~~~~~~~d---s~e~~~~dtvk   76 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR--GHTVAAQGGINAALGNTVDVEGD---SPELHFYDTVK   76 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC--CchhhhcccccccccCcccccCC---CHHHHHHHHHh
Confidence            34567999999999999999999999999999999988775  333222222222111100  000   00011111111


Q ss_pred             HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCc-cccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPH-QVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      ..  +...+...+..   -.+...+...++..+|.++ +..+.....+.++. ...+   ...+   .+.-....++..|
T Consensus        77 g~--d~l~dqd~i~~---~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg-~~~~---rt~~---~~~~tG~~ll~~L  144 (562)
T COG1053          77 GG--DGLGDQDAVEA---FADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG-HSKP---RTCF---AADKTGHELLHTL  144 (562)
T ss_pred             cc--CCcCCHHHHHH---HHHhhHHHHHHHHHhCCCcccCCCccccccccCC-cCCC---ccee---cCCCCcHHHHHHH
Confidence            10  00000000000   0001134455666677664 22332223333333 1111   1111   1222235677888


Q ss_pred             HHHHHH-CCCEEEcCceEEEEEEecccCCC---eEEEEcCCCc--EEEcCEEEEcCCCCh
Q 015088          160 QTLAIK-NGAVLRDNMEVKTVLKVKDAVKG---GVTVVTSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       160 ~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~---~~~v~~~~g~--~i~ad~VV~A~G~~s  213 (413)
                      .+++.+ .+.+++.+..++++..  ++++.   .+.+...+|+  .+.++.||+|||+..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         145 YEQLLKFSGIEIFDEYFVLDLLV--DDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             HHHHHHhhcchhhhhhhhhhhee--cCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            888877 5778999999999987  53332   2333455665  677899999999866

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.07  E-value=2.7e-09  Score=104.18  Aligned_cols=57  Identities=14%  Similarity=0.151  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.+.+.+++.|++++++++|.++..  .  ++.+.+.+.+|+++++|.||+|+|...
T Consensus       266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~--~--~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        266 PKLAAALEEHVKEYDVDIMNLQRASKLEP--A--AGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            56777888888889999999999999988  6  357788888887899999999999854

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.07  E-value=1.2e-09  Score=97.38  Aligned_cols=171  Identities=20%  Similarity=0.264  Sum_probs=101.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQ   79 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~------g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   79 (413)
                      ..+||+|||||+||++||.+|.+.      .++|+|+||....|+..-|..   ++.+..        ..+-+..|++.-
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa---viep~a--------ldEL~P~wke~~  143 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA---VIEPGA--------LDELLPDWKEDG  143 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce---eeccch--------hhhhCcchhhcC
Confidence            468999999999999999999763      469999999988876544432   111110        001111111111


Q ss_pred             HHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      .......  ....                        +.++..+   .+    +.++.. ..+-.....++.-..++++|
T Consensus       144 apl~t~v--T~d~------------------------~~fLt~~---~~----i~vPv~-~pm~NhGNYvv~L~~~v~wL  189 (621)
T KOG2415|consen  144 APLNTPV--TSDK------------------------FKFLTGK---GR----ISVPVP-SPMDNHGNYVVSLGQLVRWL  189 (621)
T ss_pred             Ccccccc--cccc------------------------eeeeccC---ce----eecCCC-cccccCCcEEEEHHHHHHHH
Confidence            1000000  0000                        0111100   00    111111 11222234566778999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC------C---------cEEEcCEEEEcCCCCh---HHhhhhhc
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN------G---------EKFWGKKCVVTAGAWV---GKLVKRIT  221 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~------g---------~~i~ad~VV~A~G~~s---~~l~~~~~  221 (413)
                      -+++++.|++|.-+..+.++..  ++++.+..+.|+|      |         -++.|+.-|+|-|...   .+++++. 
T Consensus       190 g~kAEe~GvEiyPg~aaSevly--~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf-  266 (621)
T KOG2415|consen  190 GEKAEELGVEIYPGFAASEVLY--DEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKF-  266 (621)
T ss_pred             HHHHHhhCceeccccchhheeE--cCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHh-
Confidence            9999999999999999999888  5555666666643      2         2688999999988753   4666665 


Q ss_pred             CCc
Q 015088          222 GLE  224 (413)
Q Consensus       222 g~~  224 (413)
                      +++
T Consensus       267 ~Lr  269 (621)
T KOG2415|consen  267 DLR  269 (621)
T ss_pred             Ccc
Confidence            444

>PLN02661 Putative thiazole synthesis

Probab=99.07  E-value=8e-09  Score=93.03  Aligned_cols=39  Identities=38%  Similarity=0.480  Sum_probs=34.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg   44 (413)
                      ..+||+|||||++|+++|++|++. |++|+|||+....||
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG  130 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG  130 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence            468999999999999999999986 899999999876643

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.07  E-value=1.3e-09  Score=95.04  Aligned_cols=47  Identities=30%  Similarity=0.432  Sum_probs=41.2

Q ss_pred             CCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            2 EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         2 ~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +..+...+|+|||+|++|++|||.|+++ ++|+|+|++...||...+.
T Consensus         3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           3 NQPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCcccee
Confidence            3455678999999999999999999986 6999999999999887765

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.06  E-value=3.4e-09  Score=101.56  Aligned_cols=36  Identities=33%  Similarity=0.531  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +|||+|||||++|+++|..|+++|++|+|||+...+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~G   37 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLG   37 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccc
Confidence            699999999999999999999999999999996543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PLN02268 probable polyamine oxidase

Probab=99.06  E-value=3.7e-09  Score=101.38  Aligned_cols=43  Identities=37%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      .+|+|||||++|++||+.|.++|++|+|+|++++.||+..+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~   43 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY   43 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC
Confidence            3799999999999999999999999999999999999876653

>PLN02676 polyamine oxidase

Probab=99.06  E-value=8.6e-09  Score=99.39  Aligned_cols=45  Identities=38%  Similarity=0.443  Sum_probs=39.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~   49 (413)
                      ...+||+|||||++|+++|++|+++|. +|+|+|++...||+..+.
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~   69 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA   69 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence            346899999999999999999999998 699999999998876553

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=99.06  E-value=9.4e-09  Score=93.39  Aligned_cols=75  Identities=17%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             EecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          143 ATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..+.-|......+++.+.+.+++.|++|+++++|.+|+.  .+ +....|.+++|+++.+|+||+|.|-.+.+++.++
T Consensus       163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~-~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l  237 (486)
T COG2509         163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI--ED-NEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEML  237 (486)
T ss_pred             cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cC-CceEEEEccCCcEEecCEEEEccCcchHHHHHHH
Confidence            334445666678999999999999999999999999998  63 2467888999988999999999998887777665

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.04  E-value=7.6e-09  Score=100.09  Aligned_cols=37  Identities=30%  Similarity=0.514  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +..|||+|||||++|+++|..|+++|++|+|||+...
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~   38 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL   38 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC
Confidence            3579999999999999999999999999999999744

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.03  E-value=1.7e-09  Score=99.33  Aligned_cols=181  Identities=17%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      ||+|||+|+|||++|+.|.+. ++|+||-|..... ..+.+..+|+ ...+.. ..........+..-.-++.+.-    
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~-~sS~~AQGGI-Aa~~~~~Ds~~~Hv~DTL~AG~glcD~~a----   81 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE-SSSYWAQGGI-AAALSEDDSPELHVADTLAAGAGLCDEEA----   81 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC-ccchhhcCce-EeeeCCCCCHHHHHHHHHHhcCCCCcHHH----
Confidence            999999999999999999988 9999999988763 2333344443 333322 2111111111111110100000    


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH-
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK-  165 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  165 (413)
                           +..   -...-...++++..+|+++..-....+ ..+...     ....-++...+  -....+.+.|.+.+.+ 
T Consensus        82 -----V~~---iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~Egg-----HS~rRIlH~~~--~TG~~I~~~L~~~v~~~  146 (518)
T COG0029          82 -----VEF---IVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGG-----HSRRRILHAAD--ATGKEIMTALLKKVRNR  146 (518)
T ss_pred             -----HHH---HHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecc-----cCCceEEEecC--CccHHHHHHHHHHHhcC
Confidence                 000   000113456666667776432111000 000000     00011111111  2346778888888877 


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEc--CCC--cEEEcCEEEEcCCCCh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNG--EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g--~~i~ad~VV~A~G~~s  213 (413)
                      .+++++.++.+.+|..  +++.....+.+  .++  ..+.++.||+|||+..
T Consensus       147 p~I~v~e~~~a~~li~--~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g  196 (518)
T COG0029         147 PNITVLEGAEALDLII--EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLG  196 (518)
T ss_pred             CCcEEEecchhhhhhh--cCCceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence            5999999999999987  64322213433  333  3788999999999865

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.02  E-value=6.4e-09  Score=101.39  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|++++.+++|.++..  +  ++.+.+.+.+|+.+.+|.+|+|+|...
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~--~--~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIET--E--DGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEe--c--CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            45667777888888999999999999987  6  356777777887899999999999853

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.01  E-value=1.3e-08  Score=97.50  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+ +++++.+|.||+|+|...+
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~--~--~~~v~v~~-~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKN--D--GDQVLVVT-EDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--c--CCEEEEEE-CCeEEEcCEEEEeeCCCCC
Confidence            45666777888889999999999999977  5  34455544 4557999999999997543

>PRK14694 putative mercuric reductase; Provisional

Probab=99.01  E-value=1.8e-08  Score=97.28  Aligned_cols=57  Identities=11%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|+++++++.|.++..  +  ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDY--N--GREFILETNAGT-LRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCEEEEEECCCE-EEeCEEEEccCCCCC
Confidence            46778888889999999999999999987  5  345566665554 999999999998664

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.00  E-value=1.6e-08  Score=97.78  Aligned_cols=33  Identities=42%  Similarity=0.590  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      ..||++|||||++|+++|.+|++.|.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            469999999999999999999999999999998

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.00  E-value=1.5e-09  Score=103.62  Aligned_cols=45  Identities=42%  Similarity=0.448  Sum_probs=41.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      .+.+|||||||++|++||.+|.+.|++|+|+|++++.||+..+..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~   58 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFK   58 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEe
Confidence            467999999999999999999999999999999999999866644

>PLN02568 polyamine oxidase

Probab=99.00  E-value=2.7e-08  Score=96.72  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=39.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-----CcEEEEcccCCCCCCCccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-----QKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-----~~V~liE~~~~~gg~~~s~   49 (413)
                      +..||+|||||++|+++|.+|++.|     ++|+|+|++..+||+..+.
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~   52 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS   52 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence            3579999999999999999999887     8999999999998876554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=99.00  E-value=5.9e-08  Score=89.30  Aligned_cols=62  Identities=24%  Similarity=0.222  Sum_probs=52.1

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCCChHHhhhhh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .+.++.....+.++++||++++++.|++++.  +      .|.+++|. +|.++.+|+|+|...+++.+.+
T Consensus       207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~------~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D------GVTLKDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C------cEEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            3578888889999999999999999999977  5      34555565 4999999999999998888764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.00  E-value=1.4e-08  Score=98.01  Aligned_cols=58  Identities=21%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|.++..  +  ++.+.+.+.++   +++.+|.||+|+|...+
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQ--T--DDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence            46677888888899999999999999987  5  34566665555   57999999999997653

>PLN02507 glutathione reductase

Probab=98.99  E-value=1.5e-08  Score=98.18  Aligned_cols=33  Identities=39%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      .+|||+|||||++|+.+|.+++++|++|+|||+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            368999999999999999999999999999997

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.99  E-value=1.4e-08  Score=98.17  Aligned_cols=58  Identities=22%  Similarity=0.289  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|.++..  +  ++.+.+.+.+|  +++.+|.||+|+|...+
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEK--N--DDQVVYENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEE--e--CCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence            45667788888899999999999999987  5  34566766666  46999999999997553

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=8.8e-09  Score=96.63  Aligned_cols=64  Identities=22%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHCC--CEEEcCceEEEEEEecccCC-CeEEEEcCCC----cEEEcCEEEEcCCCChHHhhhhh
Q 015088          153 TKAVSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVK-GGVTVVTSNG----EKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g----~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..+++.|...++..+  ..|.++++|..+..  .  . +.|.|.+.++    +...+|.||+|+|.+..+-++..
T Consensus        90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~--~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDS--I--DKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             HHHHHHHHHHHHhcChhhheEecccEEEEee--c--cCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence            478888888888776  47888999999988  6  4 6888887544    35678999999999863444433

>PRK14727 putative mercuric reductase; Provisional

Probab=98.98  E-value=4.1e-08  Score=95.03  Aligned_cols=57  Identities=19%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus       228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~--~~~~~v~~~~g~-i~aD~VlvA~G~~pn  284 (479)
T PRK14727        228 PLLGETLTACFEKEGIEVLNNTQASLVEH--D--DNGFVLTTGHGE-LRAEKLLISTGRHAN  284 (479)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCcEEEEEEE--e--CCEEEEEEcCCe-EEeCEEEEccCCCCC
Confidence            35667788888899999999999999987  5  345667666665 999999999998764

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.98  E-value=5.4e-09  Score=94.89  Aligned_cols=35  Identities=40%  Similarity=0.574  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~   42 (413)
                      ||+||||+|.+|+.+|.+|++.| .+|+|||++...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence            79999999999999999999997 699999998754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00058 glutathione reductase; Provisional

Probab=98.97  E-value=1.2e-08  Score=99.57  Aligned_cols=37  Identities=32%  Similarity=0.395  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|||+|||||++|.++|..+++.|++|+|||++..+
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~G   83 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLG   83 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            4689999999999999999999999999999997433

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.95  E-value=3e-08  Score=89.66  Aligned_cols=70  Identities=23%  Similarity=0.246  Sum_probs=58.8

Q ss_pred             eEEEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          139 WVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..++..+.+|.   ..+..++.+.+++.|.+|.+...|.+|..  ++ +..+.|+..+|+++.++.||-.++.|..
T Consensus       253 ~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Ill--d~-gka~GV~L~dG~ev~sk~VvSNAt~~~T  322 (561)
T KOG4254|consen  253 KGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILL--DS-GKAVGVRLADGTEVRSKIVVSNATPWDT  322 (561)
T ss_pred             CCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheec--cC-CeEEEEEecCCcEEEeeeeecCCchHHH
Confidence            34444555555   78889999999999999999999999988  74 5788999999999999999999998864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.95  E-value=2.1e-08  Score=96.74  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      +|||+|||||++|+++|..++++|++|+|||+....||.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~   41 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGT   41 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeee
Confidence            599999999999999999999999999999985545443

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.95  E-value=1.9e-08  Score=81.56  Aligned_cols=41  Identities=29%  Similarity=0.503  Sum_probs=32.6

Q ss_pred             CCEEE-cCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088          167 GAVLR-DNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA  211 (413)
Q Consensus       167 Gv~i~-~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~  211 (413)
                      |+++. .+.+|++|..  .  ++++.+.+.+|..+.+|.||+|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~--~--~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRR--D--DDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEE--c--CCcEEEEECCCCEEEeCEEEECCCC
Confidence            54433 3678999988  6  4568888899998999999999995

>PLN02546 glutathione reductase

Probab=98.94  E-value=2.2e-08  Score=97.65  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      +|||+|||+|++|..+|..++++|++|+|||+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>PRK10262 thioredoxin reductase; Provisional

Probab=98.93  E-value=2.2e-08  Score=91.88  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+..+||+|||||++|+++|..|+++|++|++||+...
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~   40 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   40 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence            45679999999999999999999999999999997543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.93  E-value=5.9e-09  Score=92.27  Aligned_cols=168  Identities=23%  Similarity=0.255  Sum_probs=89.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +..+||||||||++|.+.|+.|++.|.+|.||||+-.--        .+++........+..+...+++  +.+   .++
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EP--------dRivGEllQPGG~~~L~~LGl~--Dcv---e~I  109 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEP--------DRIVGELLQPGGYLALSKLGLE--DCV---EGI  109 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccc--------hHHHHHhcCcchhHHHHHhCHH--HHh---hcc
Confidence            456899999999999999999999999999999974320        0011000011112222222111  000   011


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      +...-.|...+..                        .++..--+|. -..+..      +.+..++-.++++.|++.+.
T Consensus       110 DAQ~v~Gy~ifk~------------------------gk~v~~pyP~-~~f~~d------~~GrsFhnGRFvq~lR~ka~  158 (509)
T KOG1298|consen  110 DAQRVTGYAIFKD------------------------GKEVDLPYPL-KNFPSD------PSGRSFHNGRFVQRLRKKAA  158 (509)
T ss_pred             cceEeeeeEEEeC------------------------CceeeccCCC-cCCCCC------cccceeeccHHHHHHHHHHh
Confidence            1111111111111                        1111111111 000111      11334455788999998887


Q ss_pred             HC-CCEEEcCceEEEEEEecccCC-CeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhh
Q 015088          165 KN-GAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       165 ~~-Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .. ++++.. ..|.++.+  +++- .++..+++.|+  +..|..-|+|.|.+|+ +-+.+
T Consensus       159 slpNV~~ee-GtV~sLle--e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSn-lRrsL  214 (509)
T KOG1298|consen  159 SLPNVRLEE-GTVKSLLE--EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSN-LRRSL  214 (509)
T ss_pred             cCCCeEEee-eeHHHHHh--ccCeEEeEEEecCCCceEEEecceEEEecchhHH-HHHHh
Confidence            65 888884 56777766  5221 34445556665  4556789999999984 44444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.92  E-value=4.7e-08  Score=92.21  Aligned_cols=57  Identities=23%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCC
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAW  212 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~  212 (413)
                      ...+.+.+.+.+++.|++++++++|+.++.  .  ++.+.+.+++|+  ++++|.|++|+|-.
T Consensus       213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~--~--~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         213 DPEISKELTKQLEKGGVKILLNTKVTAVEK--K--DDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             CHHHHHHHHHHHHhCCeEEEccceEEEEEe--c--CCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence            367888899999888899999999999988  6  333777776665  68999999999963

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.91  E-value=1.8e-07  Score=87.84  Aligned_cols=58  Identities=14%  Similarity=0.118  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s  213 (413)
                      .++.+.|.+.+++.|++++.+++|.+++.  .+ +....+.+.+|+  .+++|.||+|+|.+.
T Consensus       259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~--~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        259 LRLQNALRRAFERLGGRIMPGDEVLGAEF--EG-GRVTAVWTRNHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--eC-CEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence            46778888999999999999999999987  62 233334444453  689999999999864

>PRK13748 putative mercuric reductase; Provisional

Probab=98.90  E-value=1.3e-07  Score=93.75  Aligned_cols=57  Identities=16%  Similarity=0.189  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|+++++++.|+++..  +  ++.+.+.+.+++ +.+|.||+|+|...+
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~~~~~v~~~~~~-i~~D~vi~a~G~~pn  366 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAH--V--DGEFVLTTGHGE-LRADKLLVATGRAPN  366 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c--CCEEEEEecCCe-EEeCEEEEccCCCcC
Confidence            45677888888999999999999999987  6  345666666665 999999999997654

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.89  E-value=1.5e-07  Score=91.45  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|+++++++.+.++..  .  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEK--M--DDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEE--c--CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            35667888888999999999999999987  5  2345666667878999999999997554

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.87  E-value=2e-08  Score=97.27  Aligned_cols=67  Identities=24%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             eChHHHHHHHHHHHHHCCC--EEEcCceEEEEEEecccC---CCeEEEEcCC-Cc--EEEcCEEEEcCCCChHHhhh
Q 015088          150 IKPTKAVSMFQTLAIKNGA--VLRDNMEVKTVLKVKDAV---KGGVTVVTSN-GE--KFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~---~~~~~v~~~~-g~--~i~ad~VV~A~G~~s~~l~~  218 (413)
                      .....+.+.|...++..+.  .|+++|+|+++.+  .++   .+.|.|++.+ |+  +-.+|.||+|+|.++.+-.+
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~--~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P  155 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER--DPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP  155 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE--ETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeee--ccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence            3446788888988888764  7899999999987  532   2579888754 43  34689999999998765444

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02053 MerA mercuric reductase

Probab=98.87  E-value=1.3e-07  Score=91.40  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|++++++++|+++..  +  ++.+.+.+.   +++++++|.||+|+|...
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~--~--~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSV--R--GGGKIITVEKPGGQGEVEADELLVATGRRP  266 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEE--c--CCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence            34667788888889999999999999987  5  234444432   234799999999999754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.87  E-value=2.6e-09  Score=72.86  Aligned_cols=40  Identities=43%  Similarity=0.568  Sum_probs=35.0

Q ss_pred             EECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC
Q 015088           12 VVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE   51 (413)
Q Consensus        12 IIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~   51 (413)
                      |||||++|+++|++|+++|++|+|+|+++..||...+...
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~   40 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI   40 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE
Confidence            8999999999999999999999999999999877666543

...

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.87  E-value=8e-08  Score=85.19  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~  211 (413)
                      ..+.+.+++.+++.|++++++++|.....  +++ +.+.+..   .+++  +++||.+.+|+|-
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~--~~d-g~v~i~ve~ak~~k~~tle~DvlLVsiGR  312 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATR--NGD-GPVEIEVENAKTGKKETLECDVLLVSIGR  312 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeec--cCC-CceEEEEEecCCCceeEEEeeEEEEEccC
Confidence            57888999999999999999999999988  632 3454443   2333  8999999999996

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.87  E-value=9.7e-08  Score=92.09  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ||+|||+|++|+.+|..|+++|.+|+|||++..+
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~g   36 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLG   36 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCC
Confidence            7999999999999999999999999999997643

>PRK09897 hypothetical protein; Provisional

Probab=98.87  E-value=1.2e-07  Score=91.68  Aligned_cols=54  Identities=13%  Similarity=0.058  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHCC--CEEEcCceEEEEEEecccCCCeEEEEcCC-CcEEEcCEEEEcCCCCh
Q 015088          156 VSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSN-GEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~-g~~i~ad~VV~A~G~~s  213 (413)
                      ...+.+.+.+.|  ++++.+++|+++..  .  ++.+.+.+.+ +..+.+|.||+|+|...
T Consensus       110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~--~--~~g~~V~t~~gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        110 FLRLVDQARQQKFAVAVYESCQVTDLQI--T--NAGVMLATNQDLPSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHHHHHHcCCeEEEEECCEEEEEEE--e--CCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence            334455555666  78888999999988  6  4578888755 45789999999999744

>PRK02106 choline dehydrogenase; Validated

Probab=98.85  E-value=1.9e-07  Score=92.30  Aligned_cols=37  Identities=32%  Similarity=0.466  Sum_probs=34.3

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFD   40 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~   40 (413)
                      +...+|+||||+|.+|+.+|.+|++ .|++|+|||++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            4567999999999999999999999 799999999985

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.84  E-value=7.8e-08  Score=83.60  Aligned_cols=73  Identities=18%  Similarity=0.140  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCCh-HHhhhhhcCCcccee
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWV-GKLVKRITGLELPIQ  228 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s-~~l~~~~~g~~~~~~  228 (413)
                      -++.+.|...+++.|+.+..+.+|.+.+.  .+ +....+.|.+..  .+++|..|+|+|.+. +.+.....++.-|+.
T Consensus       258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~--~~-~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf  333 (421)
T COG3075         258 IRLHNQLQRQFEQLGGLWMPGDEVKKATC--KG-GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIF  333 (421)
T ss_pred             hhHHHHHHHHHHHcCceEecCCceeeeee--eC-CeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchh
Confidence            45567888899999999999999999887  62 345566666654  578999999999854 445444323444443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.82  E-value=1.3e-07  Score=91.45  Aligned_cols=36  Identities=39%  Similarity=0.489  Sum_probs=33.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +|||+|||||++|+++|.+|+++|++|+|||++..+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~G   39 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWG   39 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            599999999999999999999999999999997544

>TIGR01810 betA choline dehydrogenase

Probab=98.81  E-value=1.4e-07  Score=92.67  Aligned_cols=33  Identities=33%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~   41 (413)
                      |+||||||.+|+.+|.+|++.| ++|+|||++..
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999998 69999999853

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.81  E-value=1.9e-07  Score=95.23  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=39.7

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++-..+.+.|.+.+.+.|++++++++|+++..  .              ..++|.||.|+|.+|.
T Consensus        94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~--~--------------~~~~D~VVgADG~~S~  142 (765)
T PRK08255         94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA--L--------------AADADLVIASDGLNSR  142 (765)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh--h--------------hcCCCEEEEcCCCCHH
Confidence            45578889999999999999999998876533  2              1478999999999874

>PLN02529 lysine-specific histone demethylase 1

Probab=98.80  E-value=1.6e-07  Score=93.65  Aligned_cols=45  Identities=36%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      ...+|+|||||++|+++|..|+++|++|+|+|+++..||+..+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~  203 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK  203 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec
Confidence            457999999999999999999999999999999999988765543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.80  E-value=1.7e-07  Score=90.34  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=31.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +|+|||||++|+++|..|++.|++|+|||++..+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~G   35 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLG   35 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            6999999999999999999999999999997654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.79  E-value=4.8e-08  Score=84.60  Aligned_cols=37  Identities=30%  Similarity=0.523  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      -|||||+|.||++++..+...|-.|+|+|+....||.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN   47 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN   47 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence            5999999999999999999998889999998877654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.77  E-value=1.8e-07  Score=90.18  Aligned_cols=34  Identities=26%  Similarity=0.499  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~   39 (413)
                      .+|||+|||||++|..+|..++++ |.+|+|||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999997 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.77  E-value=1.4e-07  Score=94.58  Aligned_cols=45  Identities=38%  Similarity=0.375  Sum_probs=40.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      ...+|+|||||++|+++|+.|+++|++|+|+|++...||+..+..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~  281 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK  281 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc
Confidence            457999999999999999999999999999999999988765543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.77  E-value=2.4e-08  Score=92.80  Aligned_cols=153  Identities=22%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc-cCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS-HGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .+||||||||-||+.||+..++.|.++.|+--+...-|..+. ...+|.-....                          
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~l--------------------------   57 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHL--------------------------   57 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCccccee--------------------------
Confidence            599999999999999999999999999999876433221111 11111100000                          


Q ss_pred             eEEeeceeeeCCCChhhHH-HHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLR-SVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                       ..          +.+.+- .........++.++++..               ..+........++|-..+.+.+++.++
T Consensus        58 -vr----------EIDALGG~Mg~~~D~~~IQ~r~LN~---------------sKGPAVra~RaQaDk~~Y~~~mk~~le  111 (621)
T COG0445          58 -VR----------EIDALGGLMGKAADKAGIQFRMLNS---------------SKGPAVRAPRAQADKWLYRRAMKNELE  111 (621)
T ss_pred             -EE----------eehhccchHHHhhhhcCCchhhccC---------------CCcchhcchhhhhhHHHHHHHHHHHHh
Confidence             00          000000 011112223444333331               111111222356677788888988888


Q ss_pred             HC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          165 KN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +. +..++ ...|.++..  +++..++.|.|.+|..+.|+.||++||.+-.
T Consensus       112 ~~~NL~l~-q~~v~dli~--e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~  159 (621)
T COG0445         112 NQPNLHLL-QGEVEDLIV--EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR  159 (621)
T ss_pred             cCCCceeh-HhhhHHHhh--cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence            76 77777 678888877  6443578999999999999999999997654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.75  E-value=2e-07  Score=90.06  Aligned_cols=34  Identities=50%  Similarity=0.644  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|||+|||||++|+++|.+|++.|++|+|||++.
T Consensus         3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   36 (460)
T PRK06292          3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP   36 (460)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            5999999999999999999999999999999943

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.73  E-value=2.2e-07  Score=66.02  Aligned_cols=34  Identities=38%  Similarity=0.601  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .|+|||||+.|+-+|..|++.|.+|+||++.+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            4899999999999999999999999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.73  E-value=4e-07  Score=79.42  Aligned_cols=36  Identities=47%  Similarity=0.602  Sum_probs=33.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+||||||+|.+|+.+|.+|+.+|++|+|+|+...
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            368999999999999999999999999999999753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=98.73  E-value=4.8e-07  Score=82.94  Aligned_cols=44  Identities=32%  Similarity=0.468  Sum_probs=38.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s   48 (413)
                      .....|||||||+||++||.+|.+.|. +|+|+|..++.||+..+
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t   63 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT   63 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence            345789999999999999999997765 89999999999988655

>PLN03000 amine oxidase

Probab=98.70  E-value=1.7e-07  Score=94.00  Aligned_cols=45  Identities=36%  Similarity=0.364  Sum_probs=41.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      ...+|+|||||++|+++|+.|.+.|++|+|+|++...||+..+..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~  227 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK  227 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec
Confidence            358999999999999999999999999999999999998876654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.67  E-value=6.5e-07  Score=86.55  Aligned_cols=33  Identities=39%  Similarity=0.622  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +||++|||+|++|+.+|+.+++.|++|+|||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.66  E-value=3.9e-07  Score=88.99  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=35.6

Q ss_pred             CCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            2 EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         2 ~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+..++|+||||+|.+|+++|.+|++.|++|+|||++.
T Consensus         2 ~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           2 SEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             CcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            345678999999999999999999998899999999984

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.66  E-value=8.5e-07  Score=87.97  Aligned_cols=34  Identities=32%  Similarity=0.584  Sum_probs=32.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|||+|||+|++|..+|..++++|++|+|||++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4799999999999999999999999999999975

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.64  E-value=3.2e-07  Score=78.13  Aligned_cols=32  Identities=44%  Similarity=0.729  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ||+|||||++|+++|.+|++.+.+|+|+|+..
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            79999999999999999999999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK07846 mycothione reductase; Reviewed

Probab=98.63  E-value=3.8e-06  Score=80.69  Aligned_cols=56  Identities=21%  Similarity=0.197  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+. .+.|++++++++|++++.  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        208 DISERFTEL-ASKRWDVRLGRNVVGVSQ--D--GSGVTLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHHHH-HhcCeEEEeCCEEEEEEE--c--CCEEEEEECCCcEeecCEEEEEECCccC
Confidence            444555543 356899999999999977  5  3456677777878999999999997654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.61  E-value=1.3e-07  Score=97.59  Aligned_cols=38  Identities=37%  Similarity=0.414  Sum_probs=34.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ...+|+|||||+||++||++|+++|++|+|+|+.+..|
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCC
Confidence            35799999999999999999999999999999987664

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=7.8e-08  Score=89.60  Aligned_cols=44  Identities=39%  Similarity=0.502  Sum_probs=40.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES   52 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~   52 (413)
                      +|+|+|||+||++||++|+++|++|+|+|+++.+||...++..+
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~   45 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDS   45 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecC
Confidence            69999999999999999999999999999999999988877543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.57  E-value=1e-06  Score=82.73  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCC
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGL  223 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~  223 (413)
                      ..+.+.+++.|++++++++|.++..  +  +..+.+.+.+|+++.+|.||+|+|...+ .+++.. ++
T Consensus       187 ~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~-gl  249 (377)
T PRK04965        187 SRLQHRLTEMGVHLLLKSQLQGLEK--T--DSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRA-GL  249 (377)
T ss_pred             HHHHHHHHhCCCEEEECCeEEEEEc--c--CCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHC-CC
Confidence            3445567778999999999999987  5  3566777888888999999999998764 455444 44

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.54  E-value=6.5e-07  Score=86.19  Aligned_cols=49  Identities=27%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCcEEE--cCEEEEcCCCCh
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGEKFW--GKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~~i~--ad~VV~A~G~~s  213 (413)
                      +.+++.|++++.+++|++|..  +  ++.+.+.. .+++.++  +|++|+|+|...
T Consensus        64 ~~~~~~gv~~~~~~~V~~id~--~--~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         64 EEFIKSGIDVKTEHEVVKVDA--K--NKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             HHHHHCCCeEEecCEEEEEEC--C--CCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence            345567999999999999987  6  45666654 2354566  999999999853

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.53  E-value=1.9e-06  Score=81.52  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH-hhhh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK-LVKR  219 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~-l~~~  219 (413)
                      ..+.+.+++.|++++++++|+++..  .   +.+.+.+.+|+++.+|.||+|+|...+. ++..
T Consensus       190 ~~l~~~l~~~GV~i~~~~~V~~i~~--~---~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~  248 (396)
T PRK09754        190 RYLLQRHQQAGVRILLNNAIEHVVD--G---EKVELTLQSGETLQADVVIYGIGISANDQLARE  248 (396)
T ss_pred             HHHHHHHHHCCCEEEeCCeeEEEEc--C---CEEEEEECCCCEEECCEEEECCCCChhhHHHHh
Confidence            3455666778999999999999865  3   4566777888889999999999987653 4443

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.53  E-value=5.3e-06  Score=80.22  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      |||+|||+|++|+++|+.|+++|++|+|||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence            699999999999999999999999999999987764

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.52  E-value=6.3e-07  Score=91.62  Aligned_cols=38  Identities=34%  Similarity=0.470  Sum_probs=34.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ...+|+|||||+||+++|++|+++|++|+|+|+.+..|
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccC
Confidence            34689999999999999999999999999999987664

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.52  E-value=4.3e-06  Score=87.74  Aligned_cols=40  Identities=33%  Similarity=0.451  Sum_probs=36.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..+||+|||||+||++||+.|++.|++|+|+|++...||.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~  201 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGS  201 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCe
Confidence            3589999999999999999999999999999998877543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR03452 mycothione_red mycothione reductase

Probab=98.50  E-value=1.5e-05  Score=76.68  Aligned_cols=57  Identities=23%  Similarity=0.261  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+ +.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       210 ~~~~~~l~~~~-~~gI~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       210 EDISDRFTEIA-KKKWDIRLGRNVTAVEQ--D--GDGVTLTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHHHHH-hcCCEEEeCCEEEEEEE--c--CCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence            34455555433 46899999999999987  6  3456677777778999999999997543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.50  E-value=2.2e-07  Score=85.90  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR   53 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~   53 (413)
                      +||+|||||++|+++|++|++.|.+|+|||++...||.+.+....+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g   47 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDET   47 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCC
Confidence            6999999999999999999999999999999988877655543333

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.48  E-value=6.4e-07  Score=85.39  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+.+|||||||.+|+.+|..|.+.+++|+|||+++.
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            357999999999999999999877889999998754

>PLN02785 Protein HOTHEAD

Probab=98.47  E-value=4.2e-06  Score=82.44  Aligned_cols=36  Identities=36%  Similarity=0.505  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +..||+||||||.+|+.+|.+|++ +.+|+|||++..
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 689999999863

>PLN02976 amine oxidase

Probab=98.46  E-value=7.1e-06  Score=85.69  Aligned_cols=43  Identities=33%  Similarity=0.420  Sum_probs=38.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      ..++|+|||||++|+++|+.|++.|++|+|+|++...||...+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence            3579999999999999999999999999999999888876544

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.44  E-value=7.4e-07  Score=83.44  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.+.+++.|++++. .+|++|+.  +  ++  .|.+.+|+++++|++|+|+|+..
T Consensus        60 ~~~~~~~~gv~~~~-~~v~~id~--~--~~--~V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        60 LRRLARQAGARFVI-AEATGIDP--D--RR--KVLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHHHhcCCEEEE-EEEEEEec--c--cC--EEEECCCCcccccEEEEccCCCC
Confidence            34555667999985 58999987  5  23  46667787799999999999754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.44  E-value=5.3e-07  Score=78.42  Aligned_cols=54  Identities=24%  Similarity=0.450  Sum_probs=44.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCC--CceeecccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGE--SRTIRATYP   60 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~--~~~~~~~~~   60 (413)
                      ++|++|||||++|+.+|..|+++|++|.||||++..||.+-+...  .|+.-..+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYG   56 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYG   56 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeecc
Confidence            369999999999999999999999999999999999877655433  455544444

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.40  E-value=2.3e-06  Score=82.00  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      +|+|||||++|+.+|..|++.  +.+|+|||+++..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            799999999999999999886  6799999998654

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=6.1e-06  Score=72.60  Aligned_cols=42  Identities=31%  Similarity=0.305  Sum_probs=37.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ....+|.+|||||..|+++|++.++.|.+|.|+|....+||+
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT   58 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT   58 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce
Confidence            345799999999999999999999999999999998666554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.39  E-value=2.4e-06  Score=80.79  Aligned_cols=44  Identities=25%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+.|++++.++.|+.+..  +  +.  .|.+.+|+++.+|++|+|||...
T Consensus        69 ~~~~i~~~~g~~V~~id~--~--~~--~v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         69 QENNVHLHSGVTIKTLGR--D--TR--ELVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHCCCEEEcCCEEEEEEC--C--CC--EEEECCCCEEEcCEEEEccCCCC
Confidence            457999999999999977  5  23  34456777899999999999865

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.38  E-value=0.00055  Score=65.39  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-cCCCcEEEcCEEEEcCCCCh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+.+.+.+++.|++|+++++|++|..  ++  +++.+. +.+|++++||.||+|+....
T Consensus       200 ~~~l~~~l~~~g~~i~~~~~V~~i~~--~~--~~~~~~~~~~g~~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       200 PEPARRWLDSRGGEVRLGTRVRSIEA--NA--GGIRALVLSGGETLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHHHHcCCEEEcCCeeeEEEE--cC--CcceEEEecCCccccCCEEEEcCCHHH
Confidence            34577778888999999999999998  63  333332 23566799999999988654

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.37  E-value=9.8e-07  Score=90.21  Aligned_cols=38  Identities=34%  Similarity=0.407  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ...+|+|||||+||+++|++|+++|++|+|+|+....|
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45799999999999999999999999999999976553

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.36  E-value=9.4e-07  Score=92.21  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=34.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ..+|+|||||+||+++|++|+++|++|+|+|+....|
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            4799999999999999999999999999999986654

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=1e-06  Score=77.05  Aligned_cols=49  Identities=31%  Similarity=0.399  Sum_probs=39.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT   54 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~   54 (413)
                      ...||.||||||.+|++||.+.+..|.+|.++|--... ..+.+|+.+|.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~Pt-P~GtsWGlGGT   65 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPT-PQGTSWGLGGT   65 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccC-CCCCccccCce
Confidence            35799999999999999999999999999999974332 24566665544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.34  E-value=5.3e-06  Score=78.01  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~   41 (413)
                      .+|+|||||+||+++|..|.+.  ..+|+||+++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            4899999999999999999875  458999998753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.32  E-value=2.2e-06  Score=87.76  Aligned_cols=46  Identities=22%  Similarity=0.287  Sum_probs=37.0

Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .++++|++++++++|++|..  +  .  ..|.+.+|+++.+|++|+|||...
T Consensus        63 ~~~~~gv~~~~g~~V~~Id~--~--~--k~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        63 WYEKHGITLYTGETVIQIDT--D--Q--KQVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHHCCCEEEcCCeEEEEEC--C--C--CEEEECCCcEeeCCEEEECCCCCc
Confidence            34567999999999999987  5  2  246667787899999999999853

>PLN02507 glutathione reductase

Probab=98.31  E-value=1.1e-05  Score=78.56  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~--~--~~~~~v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTK--T--EGGIKVITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEE--e--CCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence            34455566778999999999999987  5  3456677777878999999999997553

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.31  E-value=1e-05  Score=83.02  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      ...+.+.+++.|+++++++.+++|..  ++.+....+.+.+|+++.+|.||+|+|...+ .++...
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~--~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~  253 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQ--EGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQC  253 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEe--cCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhc
Confidence            34566677889999999999999976  4223455677788888999999999998654 344433

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.30  E-value=1.2e-05  Score=77.34  Aligned_cols=56  Identities=13%  Similarity=0.001  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|+++++++.|+++..  +++ +.+.+.+.+| +.+.+|.||+|+|...+
T Consensus       210 ~~~~~~~l~~~gI~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       210 SETITEEYEKEGINVHKLSKPVKVEK--TVE-GKLVIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHHcCCEEEcCCEEEEEEE--eCC-ceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence            34456667778999999999999977  522 3356666667 46999999999997654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.30  E-value=9.3e-06  Score=83.21  Aligned_cols=60  Identities=12%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      ..+.+.+++.|+++++++.++++..  +  +....|.+.+|+++.+|.||+|+|...+ .++...
T Consensus       186 ~~l~~~l~~~GV~v~~~~~v~~i~~--~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~  246 (785)
T TIGR02374       186 RLLQRELEQKGLTFLLEKDTVEIVG--A--TKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA  246 (785)
T ss_pred             HHHHHHHHHcCCEEEeCCceEEEEc--C--CceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence            3455667788999999999999876  5  3455677788888999999999998654 344433

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.28  E-value=1.5e-05  Score=76.72  Aligned_cols=61  Identities=20%  Similarity=0.259  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      +.+.+.+.+++.|++++++++|.++..  +  +....+.++++ ++.+|.||+|+|...+ .++...
T Consensus       193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~--~--~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~  254 (444)
T PRK09564        193 ITDVMEEELRENGVELHLNEFVKSLIG--E--DKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDT  254 (444)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEec--C--CcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhc
Confidence            344556667788999999999999965  4  34455556555 5999999999998653 555544

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=4.1e-06  Score=69.05  Aligned_cols=58  Identities=12%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l  216 (413)
                      ..+.+.++++.++.|.+|+. ..|.++..  +  ...+.+.|+.+. +.+|.||+|+|+-+..+
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~t-EtVskv~~--s--skpF~l~td~~~-v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIIT-ETVSKVDL--S--SKPFKLWTDARP-VTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHHHHHHHhhcceeee-eehhhccc--c--CCCeEEEecCCc-eeeeeEEEecccceeee
Confidence            57888999999999999985 46888877  6  578888886666 99999999999876544

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.26  E-value=4.7e-06  Score=76.27  Aligned_cols=37  Identities=38%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +.+|||||||||-||+-+|...++.|.+.+|+-.+-.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD   62 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence            3578999999999999999999999999999988743

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.25  E-value=1.6e-05  Score=76.41  Aligned_cols=53  Identities=15%  Similarity=0.256  Sum_probs=41.6

Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+++.|++++++++|+++..  .  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       212 ~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       212 LLARNMEGRGIRIHPQTSLTSITK--T--DDGLKVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEE--c--CCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence            345566778999999999999987  5  3456666667778999999999997543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.24  E-value=1.7e-05  Score=76.90  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            5899999999999999999999999999998653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.23  E-value=2.1e-05  Score=76.09  Aligned_cols=54  Identities=15%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.++++|++++++++|.+++.  +  ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       222 ~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        222 EVLEEVFARRGMTVLKRSRAESVER--T--GDGVVVTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHCCcEEEcCCEEEEEEE--e--CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence            3455667778999999999999976  5  3456677677888999999999997654

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.23  E-value=7.2e-06  Score=84.11  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=36.5

Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+++.|++++.+++|++|..  +  .  ..|.+.+|+++.+|++|+|||...
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~--~--~--~~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINR--Q--E--KVIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeC--C--C--cEEEECCCcEEECCEEEECCCCCc
Confidence            34567999999999999977  5  2  245567787899999999999853

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.23  E-value=1.8e-05  Score=76.50  Aligned_cols=34  Identities=29%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||+|.+|+.+|..|++.|.+|+|+|+.+.
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  206 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR  206 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4799999999999999999999999999997643

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.23  E-value=2.2e-05  Score=75.15  Aligned_cols=58  Identities=21%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      ..+.+.+++.|++++++++|.++..  +  +. + +.+.+|+++.+|.||+|+|...+ .++..+
T Consensus       183 ~~~~~~l~~~gV~v~~~~~v~~i~~--~--~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~  241 (427)
T TIGR03385       183 QIVEEELKKHEINLRLNEEVDSIEG--E--ER-V-KVFTSGGVYQADMVILATGIKPNSELAKDS  241 (427)
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEec--C--CC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhc
Confidence            3445566778999999999999976  5  22 3 44456778999999999998654 455543

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.23  E-value=2.6e-05  Score=75.22  Aligned_cols=55  Identities=9%  Similarity=0.055  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|++++.  +  +..+.+...++ .++.+|.||+|+|...+
T Consensus       214 ~~~l~~~L~~~GI~i~~~~~V~~i~~--~--~~~v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        214 AHILREKLENDGVKIFTGAALKGLNS--Y--KKQALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEE--c--CCEEEEEECCceEEEEeCEEEEecCCccC
Confidence            33445567778999999999999977  5  34455544322 26899999999997543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.20  E-value=2.4e-05  Score=74.65  Aligned_cols=58  Identities=28%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      +.+.+.+.+++.|++++++++|.++..  +      .+.+++|+++.+|.+|+|+|...+.++..+
T Consensus       230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~------~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~  287 (424)
T PTZ00318        230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K------EVVLKDGEVIPTGLVVWSTGVGPGPLTKQL  287 (424)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEeC--C------EEEECCCCEEEccEEEEccCCCCcchhhhc
Confidence            344456667788999999999998865  3      245678888999999999997666666554

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.17  E-value=1.7e-05  Score=76.04  Aligned_cols=54  Identities=26%  Similarity=0.316  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ...+...+...|.+|+++++|++|..  +  ++.+.+.+.+|++++||+||+|+....
T Consensus       212 ~~~~~~~~~~~g~~i~l~~~V~~I~~--~--~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  212 SLALALAAEELGGEIRLNTPVTRIER--E--DGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHHHHHGGGEESSEEEEEEEE--E--SSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             hHHHHHHHhhcCceeecCCcceeccc--c--ccccccccccceEEecceeeecCchhh
Confidence            44445555556789999999999999  7  578899999998899999999999744

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.17  E-value=3.2e-05  Score=71.79  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~---g~~V~liE~~~~~g   43 (413)
                      ++|+|||+|++|+.+|.+|.+.   ...|.|+|+....|
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G   40 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG   40 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence            5899999999999999999985   12399999987764

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.14  E-value=8.3e-05  Score=73.51  Aligned_cols=61  Identities=18%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ...+...|.+.+++.|++++.++.++++..  ++++.++.+.   ..+|+  .+.|+.||+|||++..
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVK--NQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEE--cCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            467888999888888999999999999987  6334444443   34565  6789999999999874

>PRK06370 mercuric reductase; Validated

Probab=98.14  E-value=3.7e-05  Score=74.37  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+.+|..|++.|.+|+|+++.+.
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  205 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR  205 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            5799999999999999999999999999998654

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.14  E-value=7.2e-05  Score=70.01  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=34.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc----CCcEEEEcccCCCCCCCcc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR----GQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~----g~~V~liE~~~~~gg~~~s   48 (413)
                      .++=|||+|+|+|++|.+|-+.    |.+|.|+|+.+..||..-+
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg   47 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG   47 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence            4688999999999999999985    6699999999988765433

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=7.6e-06  Score=72.02  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      .++...|.+..++..+++..-.++++++.  .+. ++-..|++.+|..++++.||+++|+.
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~--a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEP--AAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhccee--cCCCCccEEEEecCCceeccceEEEecCcc
Confidence            56777888888888888888888888876  432 25678999999999999999999983

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.12  E-value=4.6e-05  Score=73.69  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.+.+.+.+++.|+++++++.|+++..  .+ ++...+.+.+|+++++|.||+|+|...+
T Consensus       233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       233 LRKELTKQLRANGINIMTNENPAKVTL--NA-DGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEE--cC-CceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            344456667788999999999999986  52 2335566666778999999999997543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.12  E-value=4.2e-05  Score=73.95  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+++|||+|..|+..|..|++.|.+|+|+|+.+.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            35799999999999999999999999999998654

>PTZ00058 glutathione reductase; Provisional

Probab=98.11  E-value=5.4e-05  Score=74.19  Aligned_cols=35  Identities=9%  Similarity=0.191  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||||..|+-.|..|++.|.+|+|+++.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            35799999999999999999999999999998653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.10  E-value=3.6e-05  Score=73.77  Aligned_cols=56  Identities=14%  Similarity=0.069  Sum_probs=40.7

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      +.+.+.+++.|++++++++|++++.  .      .+.+.+|+++.+|.||+|+|...+ +++...
T Consensus       193 ~~l~~~l~~~gI~i~~~~~v~~i~~--~------~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~  249 (438)
T PRK13512        193 QPILDELDKREIPYRLNEEIDAING--N------EVTFKSGKVEHYDMIIEGVGTHPNSKFIESS  249 (438)
T ss_pred             HHHHHHHHhcCCEEEECCeEEEEeC--C------EEEECCCCEEEeCEEEECcCCCcChHHHHhc
Confidence            3445566778999999999999854  2      244456777999999999997653 444443

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.10  E-value=4.6e-05  Score=73.91  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..|+|||+|.+|+.+|..|++.|.+|+|+++.+.
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  217 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA  217 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence            5899999999999999999999999999998653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.06  E-value=4.8e-06  Score=76.47  Aligned_cols=40  Identities=35%  Similarity=0.468  Sum_probs=36.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~   46 (413)
                      .-+++|||||++|++||+.|++.|++|.|+||++..||+-
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm  163 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM  163 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence            3579999999999999999999999999999999988763

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.04  E-value=5.7e-06  Score=76.84  Aligned_cols=35  Identities=49%  Similarity=0.554  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            58999999999999999999999999999987654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.04  E-value=7.3e-05  Score=72.47  Aligned_cols=54  Identities=9%  Similarity=-0.007  Sum_probs=39.4

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---cEEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+++.|+++++++.+.++..  .  ++.+.+...++   +++.+|.||+|+|...+
T Consensus       224 ~~l~~~L~~~gV~i~~~~~v~~v~~--~--~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       224 NKVGEHMEEHGVKFKRQFVPIKVEQ--I--EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHcCCEEEeCceEEEEEE--c--CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            3455667778999999999999977  5  23444544444   36999999999997543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.03  E-value=6e-06  Score=84.99  Aligned_cols=39  Identities=33%  Similarity=0.416  Sum_probs=35.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..+|+|||||+||++||++|+++|++|+|+|+....||.
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~  575 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV  575 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCce
Confidence            479999999999999999999999999999998877544

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.02  E-value=0.00025  Score=68.27  Aligned_cols=38  Identities=34%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~   42 (413)
                      ...||.||||||.||+..|.+|++. ..+|+|||++...
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4579999999999999999999996 6899999998644

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.02  E-value=7.4e-06  Score=75.22  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~   42 (413)
                      .+|+|+||.|+++++.|..|.+.+ .++..+|+.+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            589999999999999999999886 899999987643

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.01  E-value=5.6e-05  Score=69.77  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+.+.+...++++|++++.++.+.++..  ..++....|.+.+|+++.||.||+++|+..
T Consensus       256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  256 SIGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            3456667788889999999999999988  544578889999999999999999999854

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.99  E-value=6.6e-05  Score=69.35  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s  213 (413)
                      ....++..|...+++.||+|+++++|++| .  +   +.+.+.+.++ ..++||.||+|+|+.+
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~--~---~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q--G---GTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e--C---CcEEEEECCCceEEecCEEEEcCCCcc
Confidence            34788999999999999999999999999 4  3   2467776443 3699999999999865

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK12831 putative oxidoreductase; Provisional

Probab=97.99  E-value=8.7e-06  Score=78.36  Aligned_cols=39  Identities=28%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...||+|||||++|+++|++|+++|++|+|+|+....||
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG  177 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG  177 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            467999999999999999999999999999999876654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=0.00013  Score=70.58  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||||..|+.+|..|++.|.+|+|||+.+.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            5799999999999999999999999999998654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.94  E-value=0.00011  Score=69.10  Aligned_cols=63  Identities=19%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             EEEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcC
Q 015088          141 GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTA  209 (413)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~  209 (413)
                      .++.+..|.   .++.+.+.+.+.=.|+.+.+++.|.+|..  ++++..+.|.. +|++++|++||...
T Consensus       223 PfLyP~YG~---GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~--~~~g~~~gV~s-~ge~v~~k~vI~dp  285 (438)
T PF00996_consen  223 PFLYPLYGL---GELPQAFCRLSAVYGGTYMLNRPIDEIVV--DEDGKVIGVKS-EGEVVKAKKVIGDP  285 (438)
T ss_dssp             SEEEETT-T---THHHHHHHHHHHHTT-EEESS--EEEEEE--ETTTEEEEEEE-TTEEEEESEEEEEG
T ss_pred             CEEEEccCC---ccHHHHHHHHhhhcCcEEEeCCccceeee--ecCCeEEEEec-CCEEEEcCEEEECC
Confidence            344555453   68899999999889999999999999987  64444555654 78889999999543

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02546 glutathione reductase

Probab=97.94  E-value=0.00015  Score=71.14  Aligned_cols=56  Identities=13%  Similarity=0.141  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ...+.+.++++|+++++++.|.++..  .+ ++.+.+.+.+++...+|.||+|+|...+
T Consensus       296 ~~~l~~~L~~~GV~i~~~~~v~~i~~--~~-~g~v~v~~~~g~~~~~D~Viva~G~~Pn  351 (558)
T PLN02546        296 RDFVAEQMSLRGIEFHTEESPQAIIK--SA-DGSLSLKTNKGTVEGFSHVMFATGRKPN  351 (558)
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEEE--cC-CCEEEEEECCeEEEecCEEEEeeccccC
Confidence            34455667778999999999999976  42 2445666666654458999999997654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.92  E-value=0.00011  Score=69.97  Aligned_cols=103  Identities=29%  Similarity=0.305  Sum_probs=78.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      .+++|||+|.+|+.+|..|.++|++|+++|+.+..++...                                        
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~----------------------------------------  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL----------------------------------------  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh----------------------------------------
Confidence            6899999999999999999999999999999876531100                                        


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  167 (413)
                                                                                     . ..+...+.+.++++|
T Consensus       177 ---------------------------------------------------------------~-~~~~~~~~~~l~~~g  192 (415)
T COG0446         177 ---------------------------------------------------------------D-PEVAEELAELLEKYG  192 (415)
T ss_pred             ---------------------------------------------------------------h-HHHHHHHHHHHHHCC
Confidence                                                                           0 123445566778889


Q ss_pred             CEEEcCceEEEEEEecccCCCeEE---EEcCCCcEEEcCEEEEcCCCChHHhhh
Q 015088          168 AVLRDNMEVKTVLKVKDAVKGGVT---VVTSNGEKFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~---v~~~~g~~i~ad~VV~A~G~~s~~l~~  218 (413)
                      +++++++.+.+++.  .  .+...   +...++..+++|.+++++|...+..+.
T Consensus       193 i~~~~~~~~~~i~~--~--~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~  242 (415)
T COG0446         193 VELLLGTKVVGVEG--K--GNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA  242 (415)
T ss_pred             cEEEeCCceEEEEc--c--cCcceeeEEEEeCCcEEEeeEEEEeecccccHHHH
Confidence            99999999999987  5  22222   466677789999999999987653433

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.90  E-value=0.00017  Score=71.84  Aligned_cols=35  Identities=23%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||||.+|+-.|..|++.|.+|+|||+.+..
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            47999999999999999999999999999987543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.86  E-value=1.7e-05  Score=74.16  Aligned_cols=35  Identities=40%  Similarity=0.501  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .||+|||||.+|+.+|+.|+++|++|+|+|+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            37999999999999999999999999999987654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.86  E-value=2.2e-05  Score=75.44  Aligned_cols=39  Identities=31%  Similarity=0.379  Sum_probs=35.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+....||
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG  170 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG  170 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            457999999999999999999999999999999876653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=97.85  E-value=0.00095  Score=60.64  Aligned_cols=76  Identities=9%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             eChHHHHHHHHH-H--HHHCCCEEEcCceEEEEEEe----cccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcC
Q 015088          150 IKPTKAVSMFQT-L--AIKNGAVLRDNMEVKTVLKV----KDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITG  222 (413)
Q Consensus       150 ~~~~~~~~~l~~-~--~~~~Gv~i~~~~~V~~i~~~----~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g  222 (413)
                      ++-.-+...|.. .  .+...+++...+++.++...    ..++...+.+.+.+|..+..|.+|-|.|..+  ..++..+
T Consensus       147 ien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns--~vR~~sn  224 (481)
T KOG3855|consen  147 IENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS--VVRKASN  224 (481)
T ss_pred             eehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc--hhhhhcC
Confidence            333444444442 2  23457999999998877541    0222356678888998899999999999755  3444445


Q ss_pred             Cccce
Q 015088          223 LELPI  227 (413)
Q Consensus       223 ~~~~~  227 (413)
                      +++.-
T Consensus       225 id~~~  229 (481)
T KOG3855|consen  225 IDVAS  229 (481)
T ss_pred             CCccc
Confidence            55543

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.85  E-value=2.2e-05  Score=71.24  Aligned_cols=43  Identities=37%  Similarity=0.400  Sum_probs=37.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCc--EEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQK--TLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~--V~liE~~~~~gg~~~s   48 (413)
                      ...+|+|+|||++|+++||+|++++-+  |+|+|+.++.||.-.|
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS   54 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS   54 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence            357899999999999999999999765  5669999999887666

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.83  E-value=2.6e-05  Score=74.76  Aligned_cols=40  Identities=30%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~--~g~~V~liE~~~~~gg~   45 (413)
                      ...+|+|||||+||++||..|++  .|++|+|+|+.+.++|.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl   66 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL   66 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence            35689999999999999999997  79999999999887653

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.79  E-value=0.00039  Score=67.33  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||+|..|+..|..|++.|.+|+|+++.+.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            5799999999999999999999999999998654

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.78  E-value=3.5e-05  Score=74.56  Aligned_cols=38  Identities=39%  Similarity=0.467  Sum_probs=34.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+|+|||||++|+++|..|+++|++|+|+|+....|+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG  180 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG  180 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            47999999999999999999999999999999877654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.76  E-value=3.3e-05  Score=77.83  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...+|+|||||++|+++|+.|++.|++|+|+|+....||
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG  364 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG  364 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            347999999999999999999999999999999877654

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=0.00043  Score=60.86  Aligned_cols=36  Identities=42%  Similarity=0.597  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +..|.|||||.||.-+||+++++|..|.|.|-++.-
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            346999999999999999999999999999988654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.74  E-value=4.3e-05  Score=73.72  Aligned_cols=39  Identities=33%  Similarity=0.393  Sum_probs=35.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...+|+|||||++|+++|+.|+++|++|+|+|+....+|
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG  177 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG  177 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCc
Confidence            357999999999999999999999999999999876643

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.70  E-value=4.9e-05  Score=77.31  Aligned_cols=36  Identities=22%  Similarity=0.532  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...+|+|||||+||+++|++|+++|++|+|+|+...
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i  417 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI  417 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence            457899999999999999999999999999998653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.66  E-value=6.3e-05  Score=75.62  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=35.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+|+|||||++|+++|+.|++.|++|+|+|+....||
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG  230 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG  230 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            46899999999999999999999999999999887654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.64  E-value=8.4e-05  Score=69.14  Aligned_cols=40  Identities=25%  Similarity=0.203  Sum_probs=35.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ....+|+|||+|++|+++|..|++.|++|+|+|+....++
T Consensus        16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg   55 (352)
T PRK12770         16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGG   55 (352)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCc
Confidence            3457999999999999999999999999999999877653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.64  E-value=7.7e-05  Score=70.60  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             cccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~-~~g~~V~liE~~~~~gg~   45 (413)
                      ...|+|||||++|+.+|.+|+ +.|++|+|+|+.+.++|.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL   78 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL   78 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence            468999999999999999875 579999999999988654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.63  E-value=0.0015  Score=60.14  Aligned_cols=36  Identities=25%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~~   41 (413)
                      ....|+|||||.++..++..|.+++.  +|+++-|+..
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            35789999999999999999999864  8999988653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.62  E-value=0.0011  Score=62.04  Aligned_cols=56  Identities=11%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..+.+.+++.|++++++++|+++..  +      .+.+.+|+++.+|.||+|+|...+.++...
T Consensus       195 ~~~~~~l~~~gV~v~~~~~v~~i~~--~------~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~  250 (364)
T TIGR03169       195 RLVLRLLARRGIEVHEGAPVTRGPD--G------ALILADGRTLPADAILWATGARAPPWLAES  250 (364)
T ss_pred             HHHHHHHHHCCCEEEeCCeeEEEcC--C------eEEeCCCCEEecCEEEEccCCChhhHHHHc
Confidence            3455667778999999999988744  2      355667878999999999998766555443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.61  E-value=8.4e-05  Score=71.73  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...+|+|||+|++|+++|..|+++|++|+|+|+.+..||
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG  178 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG  178 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            347899999999999999999999999999999887654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=97.58  E-value=0.00058  Score=67.58  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ...+...|.+.+++.|++|+.++.+++|..  ++ +.++.+.   ..+|+  .+.|+.||+|||++..
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLM--ED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEe--eC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence            356888999989889999999999999987  63 3344333   34565  6889999999999864

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.53  E-value=0.00012  Score=73.52  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+|+|||+|++|+++|+.|+++|++|+|+|+.+..||
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG  347 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG  347 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            57899999999999999999999999999999987754

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=97.53  E-value=0.011  Score=54.20  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             HHHHHHcCCcccCCCCeEEEEecCCceeC--hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--
Q 015088          123 RQVLEKYSGRIEIPENWVGVATELGGVIK--PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--  198 (413)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--  198 (413)
                      +++.+.+|. +. .+....+....+..++  ..++.+...+++.+.|+++..++.|.++..      ..+.+.+.+|+  
T Consensus       243 ~Dl~k~yp~-l~-~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~------~~I~~~~~~g~~~  314 (491)
T KOG2495|consen  243 EDLRKIYPE-LK-KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE------KTIHAKTKDGEIE  314 (491)
T ss_pred             HHHHHhhhc-ch-hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC------cEEEEEcCCCcee
Confidence            455666665 22 1222234444444443  256666777777788999999999998865      35667777776  


Q ss_pred             EEEcCEEEEcCCCChHHhhhhh
Q 015088          199 KFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       199 ~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      +|..-.+|+++|..+.++.+.+
T Consensus       315 ~iPYG~lVWatG~~~rp~~k~l  336 (491)
T KOG2495|consen  315 EIPYGLLVWATGNGPRPVIKDL  336 (491)
T ss_pred             eecceEEEecCCCCCchhhhhH
Confidence            6788889999999888887776

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.49  E-value=0.00015  Score=70.26  Aligned_cols=38  Identities=34%  Similarity=0.364  Sum_probs=34.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+|+|||||++|+++|..|+++|++|+|+|+....||
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG  180 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG  180 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence            36999999999999999999999999999999876643

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.48  E-value=0.00091  Score=65.57  Aligned_cols=33  Identities=39%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            489999999999999999999999999998653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.48  E-value=0.0013  Score=60.48  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|..|+-+|..|++.+.+|+++++..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            479999999999999999999999999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.47  E-value=0.0012  Score=63.64  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence            479999999999999999999999999999863

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.44  E-value=3.3e-05  Score=63.23  Aligned_cols=39  Identities=38%  Similarity=0.441  Sum_probs=33.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~   45 (413)
                      ..||+|||+|.+|+++||+.+++  ..+|.|||..-.+||.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG  116 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG  116 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence            36999999999999999999964  6899999998777543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.44  E-value=0.0012  Score=59.80  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|+|||+|..|+-+|..|++.+.+|+++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~  173 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR  173 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence            47999999999999999999999999999985

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.40  E-value=0.00019  Score=71.11  Aligned_cols=38  Identities=34%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+|+|||+|++|+++|+.|++.|++|+|+|+.+..||
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG  174 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG  174 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            46899999999999999999999999999999887754

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.36  E-value=0.0013  Score=61.12  Aligned_cols=32  Identities=31%  Similarity=0.370  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~   39 (413)
                      ..|+|||+|..|+-+|..|++.|.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence            4799999999999999999999987 9999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.29  E-value=0.00023  Score=67.55  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      .+|+|||||++|+++|..|++.|++|+++|+.+..||
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            6899999999999999999999999999999887754

>PRK13984 putative oxidoreductase; Provisional

Probab=97.28  E-value=0.00036  Score=69.88  Aligned_cols=39  Identities=33%  Similarity=0.388  Sum_probs=35.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...+|+|||+|++|+++|..|+++|++|+|+|+....+|
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG  320 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG  320 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence            457899999999999999999999999999999887654

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.24  E-value=0.0004  Score=62.27  Aligned_cols=42  Identities=24%  Similarity=0.242  Sum_probs=36.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~   46 (413)
                      .....|+|||+|+||+.+|.+|.++  +.+|.|+|+.+.+.|..
T Consensus        18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv   61 (468)
T KOG1800|consen   18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV   61 (468)
T ss_pred             cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence            3456999999999999999999985  68999999999886543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.21  E-value=0.019  Score=50.72  Aligned_cols=73  Identities=8%  Similarity=0.008  Sum_probs=45.1

Q ss_pred             cCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhh
Q 015088          145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKR  219 (413)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~  219 (413)
                      .....+.-..+.++|.+.++++++++.......++..  ++....+....+-|.  +++.+.+-+..-..+.++++.
T Consensus       228 sl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~--~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~  302 (446)
T KOG3851|consen  228 SLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRT--NDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLAN  302 (446)
T ss_pred             CccceecHHHHHHHHHHHHHhcceEeeeccceEEEec--cchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhc
Confidence            4445566689999999999999999988877777766  422122222222243  455565555555455555543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.21  E-value=0.0024  Score=58.12  Aligned_cols=39  Identities=31%  Similarity=0.339  Sum_probs=33.9

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~   42 (413)
                      +...+|+|.||-|++-++.|..|.+.+ .++..+||.+.-
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            446799999999999999999999875 789999998643

>PRK12831 putative oxidoreductase; Provisional

Probab=97.05  E-value=0.0072  Score=58.40  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..|.+.|.+|+|+++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            589999999999999999999999999999753

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.04  E-value=0.0071  Score=58.46  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      .-+|+|||+|..|+-+|..|.+.|. +|++++++
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~  306 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR  306 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence            3589999999999999999999998 89999875

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.03  E-value=0.0027  Score=62.12  Aligned_cols=54  Identities=9%  Similarity=0.075  Sum_probs=44.6

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..|++.+++.|+++++++....+..  .  .....++.++|..+.||.||+|+|..-+
T Consensus       191 ~lL~~~le~~Gi~~~l~~~t~ei~g--~--~~~~~vr~~DG~~i~ad~VV~a~GIrPn  244 (793)
T COG1251         191 RLLRRKLEDLGIKVLLEKNTEEIVG--E--DKVEGVRFADGTEIPADLVVMAVGIRPN  244 (793)
T ss_pred             HHHHHHHHhhcceeecccchhhhhc--C--cceeeEeecCCCcccceeEEEecccccc
Confidence            4567778888999999888877765  4  4677889999999999999999998654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.97  E-value=0.0055  Score=60.17  Aligned_cols=33  Identities=33%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..|+..+.+|+|+++.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~  384 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP  384 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence            479999999999999999999999999998754

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.021  Score=52.06  Aligned_cols=43  Identities=30%  Similarity=0.527  Sum_probs=37.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      ..|||+|+|-|..=+..+..|+..|.+|+.+|+++.-|+..+|
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sas   45 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESAS   45 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccc
Confidence            3499999999999999999999999999999999877655443

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.71  E-value=0.0016  Score=66.18  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=34.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..|.|||+|++|++||-.|-+.|+.|+|+||.++.||
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            6899999999999999999999999999999998864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.57  E-value=0.028  Score=54.53  Aligned_cols=32  Identities=19%  Similarity=0.290  Sum_probs=27.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ..|+|||+|..|+-+|..+.+.|. +|++++..
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~  314 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM  314 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence            479999999999999999888886 78866654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.50  E-value=0.03  Score=57.75  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..|.+.|.+ |+|++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4799999999999999999999987 99998753

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.46  E-value=0.015  Score=54.32  Aligned_cols=43  Identities=23%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA  211 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~  211 (413)
                      .++.|+++++++.|++++.  .    .-.+.+.+|+++..+++|+|||.
T Consensus       137 Yke~gIe~~~~t~v~~~D~--~----~K~l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  137 YKEKGIELILGTSVVKADL--A----SKTLVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             HhhcCceEEEcceeEEeec--c----ccEEEeCCCceeecceEEEeecC
Confidence            4567999999999999987  4    23677789999999999999998

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.33  E-value=0.0049  Score=49.93  Aligned_cols=32  Identities=31%  Similarity=0.468  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||||..|.++|..|+++|++|+|+.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.32  E-value=0.0055  Score=50.85  Aligned_cols=32  Identities=34%  Similarity=0.516  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|...|..++..|++|+|+|.+.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            38999999999999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.28  E-value=0.054  Score=52.45  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..++|||+|..|+-+|..+.+.|. +|+||++++
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence            579999999999999999999995 799999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.23  E-value=0.0047  Score=51.41  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=26.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            59999999999999999999999999999875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.23  E-value=0.0064  Score=48.90  Aligned_cols=31  Identities=32%  Similarity=0.580  Sum_probs=29.3

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |+|+|+|..|+..|++|++.|++|+++.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999999864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.20  E-value=0.062  Score=54.50  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .+|+|||||..|+-+|..+.+.|. +|+++.++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~  502 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD  502 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence            479999999999999999999986 699988753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.14  E-value=0.0068  Score=52.23  Aligned_cols=33  Identities=30%  Similarity=0.627  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +++|||+|-.|.+.|..|++.|++|++||++..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            599999999999999999999999999999753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.08  E-value=0.0096  Score=54.06  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      -..|.|||+|..|...|..++.+|++|+++|...
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3569999999999999999999999999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.97  E-value=0.011  Score=53.89  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|+|||+|..|...|..|++.|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3579999999999999999999999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=95.82  E-value=0.099  Score=54.96  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|+|||||.+|+-+|..+.+.|.+|+++.++
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence            47999999999999999999999999999875

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.81  E-value=0.013  Score=52.73  Aligned_cols=33  Identities=39%  Similarity=0.474  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+..|++|+++|..+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999999864

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.73  E-value=0.11  Score=51.52  Aligned_cols=46  Identities=20%  Similarity=0.249  Sum_probs=38.6

Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+++|++++.+.+|+.|.+  .    .-.|.++.|.++..|.+|+|||...
T Consensus        68 wy~~~~i~L~~~~~v~~idr--~----~k~V~t~~g~~~~YDkLilATGS~p  113 (793)
T COG1251          68 WYEENGITLYTGEKVIQIDR--A----NKVVTTDAGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             hHHHcCcEEEcCCeeEEecc--C----cceEEccCCcEeecceeEEecCccc
Confidence            45678999999999999988  5    2357788899899999999999854

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.64  E-value=0.12  Score=52.24  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|+|||+|..|+-+|..|.+.|. +|+|+.++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            579999999999999999999986 699998764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.63  E-value=0.12  Score=54.03  Aligned_cols=33  Identities=27%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc-C-CcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR-G-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~-g-~~V~liE~~~   40 (413)
                      .+|+|||||.+|+-+|..+.+. | .+|+|+.++.
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            5799999999999999998887 5 4899999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.63  E-value=0.017  Score=52.49  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++|+|||+|..|...|.+|++.|.+|+++.++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            47999999999999999999999999999985

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.62  E-value=0.015  Score=52.93  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||+|..|.+.|..|+++|++|+++|++.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999999999999999999999999999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.60  E-value=0.015  Score=56.68  Aligned_cols=33  Identities=30%  Similarity=0.490  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|||+|.+|+++|..|.++|++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            479999999999999999999999999999764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.60  E-value=0.018  Score=54.96  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=33.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ...++|||||+.|+-.|..+++.|.+|+|||+.+..
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i  208 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI  208 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            457999999999999999999999999999998765

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.45  E-value=0.02  Score=55.06  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  192 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI  192 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            47999999999999999999999999999997654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.38  E-value=0.019  Score=52.40  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|++.|..|++.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.38  E-value=0.02  Score=55.49  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .|+|||.|.+|+++|..|.++|++|++.|+....
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            4899999999999999999999999999987543

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.26  E-value=0.025  Score=54.81  Aligned_cols=35  Identities=26%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            58999999999999999999999999999997654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07846 mycothione reductase; Reviewed

Probab=95.24  E-value=0.026  Score=54.42  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||..|+.+|..|++.|.+|+|+++.+..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            58999999999999999999999999999997654

>TIGR02053 MerA mercuric reductase

Probab=95.18  E-value=0.028  Score=54.53  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|.+|+.+|..|++.|.+|+|+++.+..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence            58999999999999999999999999999997654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.04  Score=49.68  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=37.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS   47 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~   47 (413)
                      ...|||+|+|-|+.=+..+..|+..|.+|+.||+++.-|...+
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a   46 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA   46 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence            3479999999999999999999999999999999987764433

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.031  Score=50.32  Aligned_cols=32  Identities=34%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||+|..|...|..|+++|++|+++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence            46999999999999999999999999999975

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.032  Score=50.28  Aligned_cols=32  Identities=41%  Similarity=0.660  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|...|..|+++|++|+++|++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.02  E-value=0.047  Score=42.89  Aligned_cols=33  Identities=30%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~   39 (413)
                      ...++|||+|-+|..+++.|.+.|.+ |+|+.|.
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46899999999999999999999986 9999985

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.037  Score=49.97  Aligned_cols=33  Identities=36%  Similarity=0.336  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            469999999999999999999999999999853

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.00  E-value=0.033  Score=53.97  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||.+|+.+|..|++.|.+|+|+++.+..
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence            47999999999999999999999999999997654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.94  E-value=0.041  Score=53.62  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |.++..-..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~   40 (507)
T PRK08268          1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA   40 (507)
T ss_pred             CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4433344579999999999999999999999999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.94  E-value=0.034  Score=50.60  Aligned_cols=30  Identities=30%  Similarity=0.509  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      +|+|||+|..|...|..|++.|++|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            499999999999999999999999999998

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=94.93  E-value=0.02  Score=49.06  Aligned_cols=33  Identities=45%  Similarity=0.628  Sum_probs=28.3

Q ss_pred             EEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088           10 VIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      .+|||||+||.++|-.|+..  ..+|+||-+++..
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            68999999999999999975  6789999876554

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.92  E-value=0.043  Score=46.28  Aligned_cols=35  Identities=31%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV   56 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4689999999999999999999999 6999998743

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.91  E-value=0.034  Score=50.57  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|+|||+|..|...|..|++.|++|++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            4999999999999999999999999999984

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.80  E-value=0.053  Score=43.80  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      ...|+|||||-.|..-|..|.+.|.+|+||..
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            46799999999999999999999999999964

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.78  E-value=0.04  Score=51.05  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|.|||+|..|...|..|+++|++|+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999985

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.77  E-value=0.055  Score=49.42  Aligned_cols=40  Identities=18%  Similarity=0.347  Sum_probs=33.6

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      |+ |-+...|+|||+|..|..+|+.|+..|+ +++|+|....
T Consensus         1 ~~-~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          1 MT-MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CC-CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            44 3344689999999999999999999996 9999998654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.76  E-value=0.047  Score=50.24  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+.|.|||+|..|...|..|++.|++|++++++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            357999999999999999999999999999985

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.74  E-value=0.042  Score=53.23  Aligned_cols=35  Identities=34%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+.+|..|++.|.+|+|+|+.+..
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            57999999999999999999999999999997654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.71  E-value=0.048  Score=52.66  Aligned_cols=34  Identities=38%  Similarity=0.511  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|+++|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.69  E-value=0.05  Score=46.09  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|||||.+|...+..|.+.|.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999999874

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR03452 mycothione_red mycothione reductase

Probab=94.67  E-value=0.046  Score=52.73  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||..|+..|..|++.|.+|+||++.+..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l  204 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL  204 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999987543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.65  E-value=0.045  Score=43.03  Aligned_cols=35  Identities=34%  Similarity=0.467  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            4579999999999999999999998 7999998754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.64  E-value=0.058  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            458999999999999999999999999999863

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.55  E-value=0.25  Score=52.56  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~   39 (413)
                      .+|+|||||.+|+-+|..+.+.|.+ |+++.++
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence            5899999999999999999999974 7777654

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.54  E-value=0.058  Score=44.21  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|+|+|.+|..||..|...|.+|+++|...
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            4689999999999999999999999999999853

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.54  E-value=0.058  Score=49.26  Aligned_cols=33  Identities=30%  Similarity=0.642  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|++.|++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999753

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.49  E-value=0.052  Score=49.04  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.48  E-value=0.06  Score=48.38  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            69999999999999999999999999999753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.43  E-value=0.46  Score=48.12  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .+|+|||+|..|+-+|..+.+.|. +|+++.++.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~  485 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD  485 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            579999999999999999888885 799998753

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.36  E-value=0.058  Score=48.88  Aligned_cols=33  Identities=30%  Similarity=0.636  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|.|||+|..|..+|+.|+.+|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            469999999999999999999887 899999843

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.33  E-value=0.053  Score=51.50  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||.|..|+..|..|+++|++|+++|.+.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.32  E-value=0.06  Score=48.93  Aligned_cols=32  Identities=41%  Similarity=0.701  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~   40 (413)
                      +|.|||+|..|.++|+.|+++|  ..|+|+|++.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999999  4899999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.20  E-value=0.077  Score=48.01  Aligned_cols=33  Identities=42%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+.+|++|+++|++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            359999999999999999999999999999863

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.20  E-value=0.037  Score=41.18  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||||-.|..-+..|.+.|.+|+|+.+..
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4689999999999999999999999999999863

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.16  E-value=0.082  Score=43.12  Aligned_cols=33  Identities=24%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             cccEEEECCCH-HHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGI-MGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~-aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus        44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            47899999996 6999999999999999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=94.03  E-value=0.12  Score=48.30  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------------CcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-------------QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-------------~~V~liE~~~~~   42 (413)
                      .+++|||||++|.-.|-+|+++-             .+|+|||+.+..
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            57999999999999999998631             389999998765

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.01  E-value=0.077  Score=49.18  Aligned_cols=33  Identities=30%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~   40 (413)
                      .+|+|||+|-.|..+|..|+++| .+|+|.+|..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            36999999999999999999998 8999999973

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=93.99  E-value=0.7  Score=41.84  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||||-+.+-.|+.|++.+.+|+|+=|++.
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~  177 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE  177 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcc
Confidence            3899999999999999999999999999998754

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.94  E-value=0.078  Score=48.77  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            49999999999999999999999999999853

>PRK04148 hypothetical protein; Provisional

Probab=93.94  E-value=0.052  Score=42.09  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+++||.| .|...|..|++.|++|+.+|-+..
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            569999999 999999999999999999998643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.93  E-value=0.082  Score=50.90  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+-.|..|++.|.+|+|+++++..
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  193 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLF  193 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            47999999999999999999999999999987543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.88  E-value=0.096  Score=47.69  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|.|||+|..|...|..|++.|++|++++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3579999999999999999999999999999864

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.84  E-value=0.1  Score=46.00  Aligned_cols=35  Identities=37%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.| .+++|+|.+..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            468999999999999999999999 49999998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.83  E-value=0.095  Score=48.22  Aligned_cols=35  Identities=26%  Similarity=0.484  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            4689999999999999999999998 9999998643

>PRK06116 glutathione reductase; Validated

Probab=93.82  E-value=0.087  Score=50.87  Aligned_cols=35  Identities=34%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++++..
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            57999999999999999999999999999987543

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.81  E-value=0.087  Score=51.53  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            47999999999999999999999999999864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.69  E-value=0.1  Score=47.96  Aligned_cols=35  Identities=29%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4689999999999999999999998 8999998754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.69  E-value=0.058  Score=47.54  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|+|||||++|.-+|.-+.-.|.+|+++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n  200 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN  200 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence            468999999999999999999999999999986

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.67  E-value=0.077  Score=52.64  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            4799999999999999999999999999998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK14694 putative mercuric reductase; Provisional

Probab=93.66  E-value=0.097  Score=50.81  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+++|||+|.+|+..|..|++.|.+|+|+++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            47999999999999999999999999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=93.65  E-value=0.091  Score=52.36  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+++|||+|..|+-+|..|++.|.+|+||++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            57999999999999999999999999999975

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.65  E-value=0.12  Score=39.18  Aligned_cols=31  Identities=26%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |+|+|.|..|..++..|.+.+.+|+++|++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            6899999999999999999777999999975

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.64  E-value=0.6  Score=43.11  Aligned_cols=44  Identities=18%  Similarity=0.166  Sum_probs=32.5

Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~  212 (413)
                      ..+.++.+++|.+++.  .++ +.+.+.+.   .|  ++++.|.||+|||..
T Consensus       291 ~~v~l~~~~ev~~~~~--~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         291 PDVRLLSLSEVQSVEP--AGD-GRYRLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCeeeccccceeeeec--CCC-ceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence            3589999999999988  733 33555432   23  378999999999985

>PRK14727 putative mercuric reductase; Provisional

Probab=93.63  E-value=0.089  Score=51.22  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            57999999999999999999999999999874

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.62  E-value=0.081  Score=50.36  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|+..|..|+++|++|+++|++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence            49999999999999999999999999999864

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=93.52  E-value=0.27  Score=48.30  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|+|||+|.+|+=.|.+|++...+|.+.-|+
T Consensus       184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~  215 (531)
T PF00743_consen  184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRR  215 (531)
T ss_dssp             SEEEEESSSHHHHHHHHHHTTTSCCEEEECC-
T ss_pred             CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEec
Confidence            57999999999999999999998899988875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.52  E-value=0.14  Score=40.58  Aligned_cols=32  Identities=34%  Similarity=0.601  Sum_probs=28.8

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|+|||+ |-.|.++|+.|...++  ++.|+|...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            5999999 9999999999999865  799999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=93.48  E-value=0.13  Score=43.85  Aligned_cols=35  Identities=34%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            4689999999999999999999998 5999998743

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.39  E-value=0.11  Score=47.64  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            59999999999999999999999999999853

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.38  E-value=0.12  Score=48.28  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|+|||+|.+|..+|..|...|.+|+++|++
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            467999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=93.33  E-value=0.11  Score=47.60  Aligned_cols=67  Identities=22%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhh
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVK  218 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~  218 (413)
                      .-+-|.-+.++-.+.+++.|+.++-|..|.++..  .  ...+.++++||.+++.|+||+|+|.-.+ ++..
T Consensus       388 ~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~--~--~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~  455 (659)
T KOG1346|consen  388 EKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRK--C--CKNLVLKLSDGSELRTDLVVVAVGEEPNSELAE  455 (659)
T ss_pred             hhhhHHHHHHHHHHHHHhcCceeccchhhhhhhh--h--ccceEEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence            4456777788888888999999999999999877  6  5678889999999999999999997443 4443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.31  E-value=0.11  Score=50.59  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|...|..|+++|++|+|+|+..
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            69999999999999999999999999999853

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.29  E-value=0.15  Score=41.98  Aligned_cols=33  Identities=33%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      .|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            48999999999999999999998 5999998743

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.26  E-value=0.11  Score=47.21  Aligned_cols=33  Identities=33%  Similarity=0.518  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .|.|+|+|..|...|++|++.|.+|+++-|...
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            599999999999999999999988888887653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.20  E-value=0.16  Score=43.02  Aligned_cols=35  Identities=31%  Similarity=0.499  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      +..|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            5789999999999999999999997 8999998643

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.17  E-value=0.11  Score=46.48  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            49999999999999999999999999999853

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.16  E-value=0.11  Score=43.61  Aligned_cols=36  Identities=36%  Similarity=0.461  Sum_probs=32.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .....|.|||||..|.-.|-..+..|+.|.|+|++.
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~   44 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE   44 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence            345689999999999999999999999999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.16  E-value=0.17  Score=40.20  Aligned_cols=33  Identities=36%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      .|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            48999999999999999999998 7999998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.14  E-value=0.15  Score=41.55  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|.+||-|..|...|..|.++|++|.++|+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            36999999999999999999999999999975

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.12  E-value=0.17  Score=46.03  Aligned_cols=36  Identities=31%  Similarity=0.551  Sum_probs=31.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +...+|.|||+|-.|.++|+.|+..|.  ++.|+|...
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            345699999999999999999999987  799999854

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.05  E-value=0.16  Score=44.28  Aligned_cols=35  Identities=31%  Similarity=0.380  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            4689999999999999999999997 8999998754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.05  E-value=0.47  Score=45.02  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=33.7

Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.++.++.+++|.++..  .  ..  .+.+.+| ++..|++|+|+|+...
T Consensus        64 ~~~~i~~~~~~~v~~id~--~--~~--~v~~~~g-~~~yd~LvlatGa~~~  107 (415)
T COG0446          64 RATGIDVRTGTEVTSIDP--E--NK--VVLLDDG-EIEYDYLVLATGARPR  107 (415)
T ss_pred             HhhCCEEeeCCEEEEecC--C--CC--EEEECCC-cccccEEEEcCCCccc
Confidence            356899999999999977  5  23  3445566 5999999999998654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.01  E-value=0.12  Score=49.75  Aligned_cols=32  Identities=16%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~   40 (413)
                      .|+|||.|..|+.+|..|+++|  ++|+.+|.+.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            5999999999999999999984  7899999764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.99  E-value=0.13  Score=50.07  Aligned_cols=33  Identities=36%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.86  E-value=0.17  Score=44.23  Aligned_cols=35  Identities=31%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            4789999999999999999999997 8999998643

>PRK08328 hypothetical protein; Provisional

Probab=92.76  E-value=0.19  Score=43.61  Aligned_cols=35  Identities=43%  Similarity=0.587  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            4689999999999999999999997 7999987643

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.72  E-value=0.18  Score=43.49  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCc---EEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQK---TLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~---V~liE~~~   40 (413)
                      ...++|+|+|-+|..+|..|.+.|.+   +.|+++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            35799999999999999999999975   99999974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.60  E-value=0.18  Score=45.26  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ..|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            579999999999999999999997 79999985

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.58  E-value=0.18  Score=43.41  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=28.2

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|.||| +|..|.+.|..|++.|++|++++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            499997 7999999999999999999998764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.57  E-value=0.2  Score=43.31  Aligned_cols=35  Identities=43%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            4689999999999999999999998 8999998643

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.57  E-value=0.16  Score=47.70  Aligned_cols=31  Identities=19%  Similarity=0.445  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||.|..|+.+|..|+. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            49999999999999988875 99999999865

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.55  E-value=0.2  Score=42.28  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999999999999999999998864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.52  E-value=0.15  Score=52.12  Aligned_cols=33  Identities=36%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++..|++|+|+|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.41  E-value=0.2  Score=45.64  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .+|.|||+|..|...|+.|+..|+ +|.|+|...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            479999999999999999999876 999999854

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.39  E-value=0.16  Score=51.81  Aligned_cols=33  Identities=36%  Similarity=0.557  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++.+|++|+|+|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.29  E-value=0.19  Score=47.69  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ...|+|+|-|..|+++|..|.++|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            568999999999999999999999999999976544

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.23  E-value=0.24  Score=45.06  Aligned_cols=34  Identities=26%  Similarity=0.509  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +..|.|||+|-.|.++|+.|+..|.  ++.|+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            5689999999999999999998876  799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.19  E-value=0.22  Score=48.13  Aligned_cols=33  Identities=27%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|+|.+|+++|..|+++|.+|++.|+..
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            468999999999999999999999999999754

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.18  E-value=0.18  Score=45.29  Aligned_cols=32  Identities=34%  Similarity=0.460  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||||..|...|..++..|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46999999999999999999988999999987

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=92.12  E-value=0.24  Score=43.03  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-----------CcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-----------QKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-----------~~V~liE~~~~   41 (413)
                      +..+|+|||+|-.|+.++..|++.|           .+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            4679999999999999999999974           28899997643

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.11  E-value=0.16  Score=39.77  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             EEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088           10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ++|+|+|..+...|..+...|++|+|+|.+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999998754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.08  E-value=0.19  Score=45.61  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088           10 VIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus        10 vvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      |.|||+|..|..+|+.|+..|+ +|+|+|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999998877 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.06  E-value=0.23  Score=48.71  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|+|.|.+|+++|..|.++|++|++.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3469999999999999999999999999999754

>PRK08223 hypothetical protein; Validated

Probab=92.03  E-value=0.27  Score=43.73  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            5689999999999999999999997 8999998754

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.96  E-value=0.23  Score=45.17  Aligned_cols=33  Identities=36%  Similarity=0.669  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~   41 (413)
                      .|+|||+|-+|.++|+.|+..|  .+++|+|+...
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999998  47999998643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.92  E-value=0.2  Score=48.50  Aligned_cols=34  Identities=26%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~-~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~   41 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE   41 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence            357999999999999 6999999999999999754

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=91.92  E-value=0.22  Score=42.43  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~   42 (413)
                      +..|+|||.|-.|..++-.|++.|. +++|||.++..
T Consensus        30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~   66 (263)
T COG1179          30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVC   66 (263)
T ss_pred             hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccc
Confidence            4689999999999999999999997 99999998754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.84  E-value=0.2  Score=48.54  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|+|+|.+|+.++..+...|.+|+++|.+.
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.83  E-value=0.23  Score=46.79  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            479999999999999999999999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.83  E-value=0.28  Score=41.40  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      +..|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            4789999999999999999999998 6999998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.78  E-value=0.3  Score=42.21  Aligned_cols=35  Identities=40%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||.|-.|..+|..|++.|. +++|+|.+..
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4689999999999999999999998 8999998754

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.76  E-value=0.21  Score=51.09  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++.+|++|+|+|.+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            469999999999999999999999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=91.73  E-value=0.28  Score=41.30  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+..
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v   56 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV   56 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence            4689999999999999999999998 6999998753

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PTZ00117 malate dehydrogenase; Provisional

Probab=91.68  E-value=0.29  Score=44.77  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~   40 (413)
                      +..|+|||+|..|.++|+.|+..| .+++|+|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            468999999999999999999988 5899999864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=91.66  E-value=0.4  Score=34.17  Aligned_cols=32  Identities=38%  Similarity=0.562  Sum_probs=29.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc-CCcEEEEcc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~   38 (413)
                      ..+++|+|.|..|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45799999999999999999998 678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.53  E-value=0.31  Score=47.00  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|.|.+|+++|..|+++|++|++.|...
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~   38 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL   38 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            479999999999999999999999999999754

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.50  E-value=0.26  Score=47.54  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |+... ...|+|+|.|.+|.++|..|. +|.+|++.|..
T Consensus         1 ~~~~~-~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~   37 (454)
T PRK01368          1 MNSHT-KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL   37 (454)
T ss_pred             CcCCC-CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence            55333 357999999999999999998 49999999954

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.50  E-value=0.35  Score=44.70  Aligned_cols=38  Identities=32%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |.......+|.|||+|..|.+.|..|++.| .|+++.++
T Consensus         1 ~~~~~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~   38 (341)
T PRK12439          1 MAAAKREPKVVVLGGGSWGTTVASICARRG-PTLQWVRS   38 (341)
T ss_pred             CccccCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence            433445578999999999999999999999 67776553

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.41  E-value=0.26  Score=44.54  Aligned_cols=32  Identities=34%  Similarity=0.390  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            38899999999999999999999999999863

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.20  E-value=0.28  Score=47.45  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|+|.|.+|+++|..|.+.|++|++.|.+.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            479999999999999999999999999999764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.17  E-value=0.34  Score=43.76  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...++|||.|.+|..+|..|.+.|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999999863

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=91.17  E-value=0.36  Score=41.76  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      .|+|||+|-.|+.++..|++.|. +++|+|.+..
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V   34 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI   34 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            48999999999999999999997 8999998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.00  E-value=0.39  Score=40.35  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...++|+|| |..|..+|..|++.|.+|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            357999997 999999999999999999999864

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=90.97  E-value=0.38  Score=42.95  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      .|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~V   34 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKV   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence            48999999999999999999997 8999998643

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.94  E-value=0.27  Score=47.37  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ++|.|||.|..|...|..|+++|++|+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY   34 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.93  E-value=0.29  Score=44.92  Aligned_cols=40  Identities=30%  Similarity=0.520  Sum_probs=36.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..+||||||-|+.=...|...++.|.+|+=+|.+..-||.
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~   46 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN   46 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence            4799999999999999999999999999999999877654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.91  E-value=0.33  Score=43.59  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...++|||.|-+|..+|..|...|.+|+++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=90.89  E-value=0.39  Score=43.24  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~   39 (413)
                      ..++|+|+|-+|.++|+.|++.|.+ |+|+.|+
T Consensus       127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999986 9999985

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.75  E-value=0.29  Score=50.06  Aligned_cols=33  Identities=33%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~-~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++ ..|++|+++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            46999999999999999999 8899999999853

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.73  E-value=0.31  Score=47.28  Aligned_cols=33  Identities=21%  Similarity=0.056  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|.|.+|.++|..|.++|.+|++.|.+.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~   41 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN   41 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence            469999999999999999999999999999754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.71  E-value=0.34  Score=46.84  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            59999999999999999999999999999854

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=90.69  E-value=3  Score=41.60  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=25.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~   39 (413)
                      ..|+|||+|..|+-+|..+.+.| .+|+|+.+.
T Consensus       268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~  300 (564)
T PRK12771        268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR  300 (564)
T ss_pred             CCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence            46889999999888888888877 467777764

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.65  E-value=0.39  Score=43.70  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      ..|.|||+|..|.+.|..|.+.|.  +|++++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999985  899998753

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.63  E-value=0.49  Score=41.39  Aligned_cols=32  Identities=31%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|.|| |..|..+|.+|+++|.+|+++++.
T Consensus         7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          7 KVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45999998 999999999999999999999875

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=90.58  E-value=0.45  Score=42.40  Aligned_cols=35  Identities=29%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...|+|||.|..|-+.|..|.++|+.|.++.++..
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~   37 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS   37 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc
Confidence            35799999999999999999999999999998754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.53  E-value=0.42  Score=43.34  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      .|.|||+|-.|.++|+.|...+.  ++.|+|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            48999999999999999999876  799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.49  E-value=0.44  Score=44.71  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             CCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            5 GEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .....|+|.|| |..|..++.+|.++|++|+.+++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34578999998 9999999999999999999999753

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.47  E-value=0.4  Score=44.92  Aligned_cols=33  Identities=33%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+||| .|..|.+.|..|.++|++|++++++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            35799999 8999999999999999999999985

>PLN02602 lactate dehydrogenase

Probab=90.45  E-value=0.49  Score=43.71  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      ..|+|||+|-.|.++|+.|+..+.  ++.|+|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            699999999999999999998876  799999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
1el5_A	389	Complex Of Monomeric Sarcosine Oxidase With The Inh		6e-45
3m0o_A	389	Crystal Structure Of The Lys265met Mutant Of Monome		9e-45
3m12_A	389	Crystal Structure Of The Lys265arg Phosphate-Crytsa		1e-44
3bhf_A	390	Crystal Structure Of R49k Mutant Of Monomeric Sarco		1e-44
1zov_A	386	Crystal Structure Of Monomeric Sarcosine Oxidase Fr		2e-44
1l9c_A	389	Role Of Histidine 269 In Catalysis By Monomeric Sar		3e-44
1el9_A	389	Complex Of Monomeric Sarcosine Oxidase With The Inh		2e-39
2uzz_A	372	X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (M		3e-36
3hzl_A	397	Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxi		2e-14
2oln_A	397	Nikd, An Unusual Amino Acid Oxidase Essential For N		2e-14
2q6u_A	384	Semet-Substituted Form Of Nikd Length = 384		1e-13
1y56_B	382	Crystal Structure Of L-Proline Dehydrogenase From P		3e-09
2gah_B	405	Heterotetrameric Sarcosine: Structure Of A Diflavin		4e-06
2gag_B	405	Heteroteterameric Sarcosine: Structure Of A Diflavi		4e-06
3atq_A	453	Geranylgeranyl Reductase (Ggr) From Sulfolobus Acid		2e-04

>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor Dimethylglycine Length = 389

Iteration: 1
 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 132/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+   DFP F     +   YG PS    GL K+  H  G   DPD         P    
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFS
Sbjct: 293 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  177 bits (449), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 205/394 (52%), Gaps = 31/394 (7%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-------RPWGPGL 297
            Y+   DFP F     +   YG PS    GL+      G   DPD         P     
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLMLGYHTFGQKIDPDTINREFGVYPEDESN 293
Query: 298 LLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSG 356
           L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFSG
Sbjct: 294 LRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSG 344
Query: 357 HGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           HGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 345 HGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+   DFP F     +   YG PS    GL ++  H  G   DPD         P    
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-RLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFS
Sbjct: 293 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine Oxidase Crystallized In Peg As Precipitant Length = 390

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/395 (33%), Positives = 207/395 (52%), Gaps = 33/395 (8%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG+++ IR  Y E   Y P
Sbjct: 5   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTKIIRHAYGEGREYVP 64
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 65  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 124
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 125 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 183
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 184 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 234
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+   DFP F     +   YG PS    GL K+  H  G   DPD         P    
Sbjct: 235 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 293
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFS
Sbjct: 294 NLRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFS 344
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 345 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 378

>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From Bacillus Sp. Ns- 129 Length = 386

Iteration: 1
 Score =  176 bits (446), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 210/391 (53%), Gaps = 25/391 (6%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A Y LAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYYLAKQGVKTLLVDSFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRS-VIASCRKNSVPHQVLDCRQV 125
             L +  LW + + E  +K++ +      GP    +  S  + +   +S+ H++ + +Q+
Sbjct: 64  FALRAQELWYELEKETHHKIFTQTGVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQL 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            ++++G +E+P+N+  +     GV+     +  ++ LA  +GA +     V+     +D 
Sbjct: 124 TDRWAG-VEVPDNYEAIFEPNSGVLFSENCIQAYRELAEAHGATVLTYTPVEDFEVTEDL 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
               VT+ T+ G  +   K VV+ GAW  KL+ ++  +E+P+Q     V ++   E +EA
Sbjct: 183 ----VTIKTAKG-SYTANKLVVSMGAWNSKLLSKLD-VEIPLQPYRQVVGFF---ECDEA 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPD--RRPWGPGLLLDS 301
            Y+    +P+F     +   YG PS    GL KI  H  G   DPD   R +G     ++
Sbjct: 234 KYSNNAHYPAFMVEVENGIYYGFPSFGGSGL-KIGYHSYGQQIDPDTINREFGAYPEDEA 292
Query: 302 -LKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGF 359
            L+++++    G   +NG +    +CMY+ TPDE FVID L  ++  +V +A GFSGHGF
Sbjct: 293 NLRKFLEQYMPG---ANGELKKGAVCMYTKTPDEHFVID-LHPKYS-NVAIAAGFSGHGF 347
Query: 360 KMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           K +  VG  LA L  +G+ +  ++  F ++R
Sbjct: 348 KFSSVVGETLAQLATTGKTEH-DISIFSLNR 377

>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine Oxidase Length = 389

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 204/394 (51%), Gaps = 31/394 (7%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +   + + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSMGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDR-------RPWGPGL 297
            Y+   DFP F     +   YG PS    GL       G   DPD         P     
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYNTFGQKIDPDTINREFGVYPEDESN 293
Query: 298 LLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSG 356
           L   L+E++ G       +NG +    +CMY+ T DE F+ID        +VV+A GFSG
Sbjct: 294 LRAFLEEYMPG-------ANGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSG 344
Query: 357 HGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           HGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 345 HGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor [methylthio]acetate Length = 389

Iteration: 1
 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 33/395 (8%)
Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY-YHP 66
           FDVIVVGAG  G +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSXGXAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63
Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP  E+  +     + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETXEAAKEHSLTVDLLEGDEI 123
Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D+
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDS 182
Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
           VK    + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E +E+
Sbjct: 183 VK----IETANG-SYTADKLIVSXGAWNSKLLSKLN-LDIPLQPYRQVVGFF---ESDES 233
Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDR-------RPWGPG 296
            Y+   DFP F     +   YG PS    GL K+  H  G   DPD         P    
Sbjct: 234 KYSNDIDFPGFXVEVPNGIYYGFPSFGGCGL-KLGYHTFGQKIDPDTINREFGVYPEDES 292
Query: 297 LLLDSLKEWIQGRFAGRVDSNGPVAT-QLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFS 355
            L   L+E+  G       +NG +    +C Y+ T DE F+ID        +VV+A GFS
Sbjct: 293 NLRAFLEEYXPG-------ANGELKRGAVCXYTKTLDEHFIIDLHPEH--SNVVIAAGFS 343
Query: 356 GHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           GHGFK +  VG +L+ L L+G+ +  ++  F I+R
Sbjct: 344 GHGFKFSSGVGEVLSQLALTGKTEH-DISIFSINR 377

>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox) Length = 372

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 198/407 (48%), Gaps = 57/407 (14%)
Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYH 65
           K+D+I++G+G +G++A Y   + G   L+ +     H  GS HG++R IR  Y E + Y 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYV 61
Query: 66  PMVLESCLLWEQ-AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+VL + +LW++ ++      ++ ++   ++GP+++  L +V  S  +  +  + LD + 
Sbjct: 62  PLVLRAQMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQG 121
Query: 125 VLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD 184
           ++ ++   I +P+N++G+     G ++   A+  +  LA + G     N  V  +    D
Sbjct: 122 IMARWP-EIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDD 180
Query: 185 AVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
               GVT+ T++GE +  KK +V AG WV  L+      ELP+Q V     +++     +
Sbjct: 181 ----GVTIETADGE-YQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQA----D 226
Query: 245 ADYAVGGDFPSFAS---YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDS 301
             Y+V   FP+F      GD Y YG P+      +KI  H G            G ++ S
Sbjct: 227 GRYSVKNKFPAFTGELPNGDQY-YGFPAEN--DALKIGKHNG------------GQVIHS 271
Query: 302 LKEWIQGRFAGRVDSNGPVATQL----------------CMYSITPDEDFVIDFLGGEFG 345
             E +   FA  V S+G  A                   C Y  +PDEDF+ID L G   
Sbjct: 272 ADERVP--FA-EVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGH-- 326
Query: 346 EDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFK 392
           ++ ++  G SGHGFK A  +G I AD     ++   +L  FR+SRF+
Sbjct: 327 DNTLLITGLSGHGFKFASVLGEIAADFAQDKKSD-FDLTPFRLSRFQ 372

>pdb|3HZL|A Chain A, Tyr258phe Mutant Of Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Open Form At 1.55a Resolution Length = 397

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 163/391 (41%), Gaps = 43/391 (10%)
Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E +DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLK 181
              +  ++  R  +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 VKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-IK 240
             D    GV+V T  G  +   K V+  G +   L++ + G  L     E  +  +R   
Sbjct: 182 DAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGNEADYAVGGDFPS------FASYG-DPYIYGT-----PSLEYPGLIKIALHGGYPCDP 288
              EA +      P+      F  +G +P+  G      P  E   L   +   G     
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFFGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVA--- 292
Query: 289 DRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGG-----E 343
           DRR       +D L  W++      VD + PV T  C+  +  D +    FLG       
Sbjct: 293 DRRQ------MDRLSGWLRDHLPT-VDPD-PVRTSTCLAVLPTDPERQF-FLGTARDLMT 343
Query: 344 FGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374
            GE +VV G  +G  FK  P  GRI ADL +
Sbjct: 344 HGEKLVVYG--AGWAFKFVPLFGRICADLAV 372

>pdb|2OLN|A Chain A, Nikd, An Unusual Amino Acid Oxidase Essential For Nikkomycin Biosynthesis: Closed Form At 1.15 A Resolution Length = 397

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 163/391 (41%), Gaps = 43/391 (10%)
Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E +DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62
Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122
Query: 122 CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLK 181
              +  ++  R  +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGFR-GLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181
Query: 182 VKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-IK 240
             D    GV+V T  G  +   K V+  G +   L++ + G  L     E  +  +R   
Sbjct: 182 DAD----GVSVTTDRG-TYRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235
Query: 241 EGNEADYAVGGDFPS------FASYG-DPYIYGT-----PSLEYPGLIKIALHGGYPCDP 288
              EA +      P+      F  +G +P+  G      P  E   L   +   G     
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVA--- 292
Query: 289 DRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGG-----E 343
           DRR       +D L  W++      VD + PV T  C+  +  D +    FLG       
Sbjct: 293 DRRQ------MDRLSGWLRDHLPT-VDPD-PVRTSTCLAVLPTDPERQF-FLGTARDLMT 343
Query: 344 FGEDVVVAGGFSGHGFKMAPAVGRILADLVL 374
            GE +VV G  +G  FK  P  GRI ADL +
Sbjct: 344 HGEKLVVYG--AGWAFKFVPLFGRICADLAV 372

>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From P.Horikoshii Length = 382

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 152/363 (41%), Gaps = 31/363 (8%)
Query: 23  AYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI 82
           A++LAKRG++  ++E+  F+   GS+      IR  + ++    ++  S  LW++   E 
Sbjct: 21  AHELAKRGEEVTVIEK-RFIGS-GSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEY 78
Query: 83  GYKVYFKAHQFDMGPSEN-KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVG 141
           G+      + F +   E  K+ +  I    K  VP +++   +  E     ++I E    
Sbjct: 79  GFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKE-IVPLLDISEVIAA 137
Query: 142 VATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFW 201
                 G   P +A + F   A + GA L +  EVK  L   + +KG    V +N     
Sbjct: 138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKG----VKTNKGIIK 193
Query: 202 GKKCVVTAGAWVGKLVKRITGL--ELPIQAVE-TTVCYWRIKEGNEADYAVGGDFPSFAS 258
               V    AW   L+  + G+  ++PI+  +   V    IK G      +     SF  
Sbjct: 194 TGIVVNATNAW-ANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVI-----SF-K 246
Query: 259 YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKE--WIQGRFAGRVDS 316
           YG  Y+  T      G I   +   Y   P           + L+E  +   +    + +
Sbjct: 247 YGHAYLTQTFHGGIIGGIGYEIGPTYDLTPT---------YEFLREVSYYFTKIIPALKN 297
Query: 317 NGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG 376
              + T    Y+ TPD +  I  +  E   D  +A GFSGHGF MAPAVG ++A+L+  G
Sbjct: 298 LLILRTWAGYYAKTPDSNPAIGRI--EELNDYYIAAGFSGHGFMMAPAVGEMVAELITKG 355
Query: 377 EAQ 379
           + +
Sbjct: 356 KTK 358

>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 405

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 28/241 (11%)
Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED 62
           P + +D I+VG G  G + AY LAK  G   + + +  +L   G+    +  IR+ Y  D
Sbjct: 18  PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL-AGGNXARNTTIIRSNYLWD 76
Query: 63  YYHPMVLESCLLWEQAQSEIGYKVYFK-------AHQFDMGPSENKSLRSVIASCRKNSV 115
               +  +S  LWEQ   ++ Y   F        AH         +S+R V A+ + N V
Sbjct: 77  ESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLG---DVRESVRRVEAN-KLNGV 132
Query: 116 PHQVLDCRQVLE-----KYSGRIEIPENWVGVAT--ELGGVIKPTKAVSMFQTLAIKNGA 168
             + LD  QV E       S  I  P   V  AT     G+ K       F   A + G 
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYP---VXGATWQPRAGIAKHDHVAWAFARKANEXGV 189
Query: 169 VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228
            +  N EV   +K  + V G   V T+ G    GK  V  AGA    ++    G ELPIQ
Sbjct: 190 DIIQNCEVTGFIKDGEKVTG---VKTTRGTIHAGK--VALAGAGHSSVLAEXAGFELPIQ 244
Query: 229 A 229
           +
Sbjct: 245 S 245

>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 405

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 100/242 (41%), Gaps = 30/242 (12%)
Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED 62
           P + +D I+VG G  G + AY LAK  G   + + +  +L   G+    +  IR+ Y  D
Sbjct: 18  PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL-AGGNMARNTTIIRSNYLWD 76
Query: 63  YYHPMVLESCLLWEQAQSEIGYKVYFK-------AHQFDMGPSENKSLRSVIASCRKNSV 115
               +  +S  LWEQ   ++ Y   F        AH         +S+R V A+ + N V
Sbjct: 77  ESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLG---DVRESVRRVEAN-KLNGV 132
Query: 116 PHQVLDCRQVLE-----KYSGRIEIP---ENWVGVATELGGVIKPTKAVSMFQTLAIKNG 167
             + LD  QV E       S  I  P     W   A    G+ K       F   A + G
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRA----GIAKHDHVAWAFARKANEMG 188
Query: 168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPI 227
             +  N EV   +K  + V G   V T+ G    GK  V  AGA    ++  + G ELPI
Sbjct: 189 VDIIQNCEVTGFIKDGEKVTG---VKTTRGTIHAGK--VALAGAGHSSVLAEMAGFELPI 243
Query: 228 QA 229
           Q+
Sbjct: 244 QS 245

>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus Acidocaldarius Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          K+DV+++G G  GSSAAYQL++RG K LL++ 
Sbjct: 6  KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS 37

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	1e-122
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	1e-113
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-109
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	3e-87
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	8e-40
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	1e-36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	7e-35
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	1e-33
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	8e-31
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	1e-20
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	7e-11
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	4e-10
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	4e-10
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	7e-10
3atr_A	453	Conserved archaeal protein; saturating double bond	1e-09
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	1e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
3dme_A	369	Conserved exported protein; structural genomics, P	3e-09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	6e-09
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	2e-08
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	6e-08
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	6e-08
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	1e-07
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	4e-07
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-07
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	4e-07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	5e-07
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	9e-07
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	2e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-06
2cul_A	232	Glucose-inhibited division protein A-related PROT	3e-06
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	5e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	5e-06
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	5e-06
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	5e-06
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	6e-06
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	6e-06
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	7e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	7e-06
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	8e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	8e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	9e-06
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-05
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	1e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	1e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	1e-05
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	2e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	2e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	5e-05
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	7e-05
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	1e-04
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	1e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	2e-04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	2e-04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	3e-04
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	3e-04
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	3e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	4e-04
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	4e-04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	4e-04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	5e-04
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	5e-04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	7e-04
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	7e-04

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score =  359 bits (923), Expect = e-122
 Identities = 123/392 (31%), Positives = 196/392 (50%), Gaps = 21/392 (5%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKS-LRSVIASCRKNSVPHQVLDCRQV 125
           + L S  LW + + E  +K++ K      GP    + +   + + +++S+   +L+  ++
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
            +++ G I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D 
Sbjct: 124 NKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPD- 181

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
               V + T+NG  +   K +V+ GAW  KL+ ++  L++P+Q     V ++   E    
Sbjct: 182 ---SVKIETANGS-YTADKLIVSMGAWNSKLLSKL-NLDIPLQPYRQVVGFFESDES--- 233

Query: 246 DYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLL---LDS 301
            Y+   DFP F     +   YG PS    GL       G   DPD      G+      +
Sbjct: 234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESN 293

Query: 302 LKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKM 361
           L+ +++    G   +       +CMY+ T DE F+ID        +VV+A GFSGHGFK 
Sbjct: 294 LRAFLEEYMPGA--NGELKRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGFKF 349

Query: 362 APAVGRILADLVLSGEAQGVELQHFRISRFKE 393
           +  VG +L+ L L+G+ +  ++  F I+R   
Sbjct: 350 SSGVGEVLSQLALTGKTE-HDISIFSINRPAL 380

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score =  335 bits (862), Expect = e-113
 Identities = 107/391 (27%), Positives = 179/391 (45%), Gaps = 25/391 (6%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYH 65
           K+D+I++G+G +G++A Y   + G   L+ +     H  GS HG++R IR  Y E   Y 
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYV 61

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAH-QFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQ 124
           P+VL + +LW++          F      ++GP+++  L +V  S  +  +  + LD + 
Sbjct: 62  PLVLRAQMLWDELSRHNEDDPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQG 121

Query: 125 VLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD 184
           ++ ++   I +P+N++G+     G ++   A+  +  LA + G     N  V  +     
Sbjct: 122 IMARWPE-IRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRH--- 177

Query: 185 AVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE 244
               GVT+ T++GE +  KK +V AG WV  L+      ELP+Q V     +++      
Sbjct: 178 -DDDGVTIETADGE-YQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQADG--- 227

Query: 245 ADYAVGGDFPSFASYGDP--YIYGTPSLEYPGLIKIALH-GGYPCDPDRRPWGPGLLLDS 301
             Y+V   FP+F          YG P+      +KI  H GG              ++  
Sbjct: 228 -RYSVKNKFPAFTGELPNGDQYYGFPA--ENDALKIGKHNGGQVIHSADERVPFAEVVSD 284

Query: 302 LKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKM 361
             E               +    C Y  +PDEDF+ID L G   ++ ++  G SGHGFK 
Sbjct: 285 GSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGH--DNTLLITGLSGHGFKF 342

Query: 362 APAVGRILADLVLSGEAQGVELQHFRISRFK 392
           A  +G I AD     ++   +L  FR+SRF+
Sbjct: 343 ASVLGEIAADFAQDKKSD-FDLTPFRLSRFQ 372

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score =  325 bits (834), Expect = e-109
 Identities = 83/394 (21%), Positives = 144/394 (36%), Gaps = 16/394 (4%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E +DV+VVG G +G + A+Q+A+RG + L+LE+  F +  G + G  R  R  Y ++   
Sbjct: 3   ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLF 62

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSE----NKSLRSVIASCRKNSVPHQVLD 121
            + LE+  LW   +S    ++  +      G ++       +    A   K SV ++ L 
Sbjct: 63  RLTLETLPLWRALESRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLK 122

Query: 122 CRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLK 181
              +  ++     +P ++ G     GG I     ++   TLA   GA LR    V  ++ 
Sbjct: 123 ATDIERRFGF-RGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVP 181

Query: 182 VKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR-IK 240
             D    GV+V T  G  +   K V+  G +   L++ + G  L     E  +  +R   
Sbjct: 182 DAD----GVSVTTDRGT-YRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT 235

Query: 241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYP--CDPDRRPWGPGL- 297
              EA +      P+       Y +G         ++            P          
Sbjct: 236 PVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRR 295

Query: 298 LLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGH 357
            +D L  W++             +T L +    P+  F +            +    +G 
Sbjct: 296 QMDRLSGWLRDHLPTVDPDPVRTSTCLAVLPTDPERQFFLGTARDLMTHGEKLVVYGAGW 355

Query: 358 GFKMAPAVGRILADLVLSGEAQGVELQHFRISRF 391
            FK  P  GRI ADL +       ++        
Sbjct: 356 AFKFVPLFGRICADLAVEDST-AYDISRLAPQSA 388

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score =  270 bits (693), Expect = 3e-87
 Identities = 63/411 (15%), Positives = 136/411 (33%), Gaps = 41/411 (9%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATY 59
           M    +   +++VGAG  G+S A  LA+RG     +L+ +       + +  ++ I +  
Sbjct: 1   MAVT-KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQ 59

Query: 60  PED------YYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLR-SVIASCRK 112
             +          +  E+   W+     +    Y          S+    R  V     +
Sbjct: 60  YSNNKDEIEVNEILAEEAFNGWKND--PLFKPYYHDTGLLMSACSQEGLDRLGVRVRPGE 117

Query: 113 NSVPHQVLDCRQVLEKYSGRIEIPENWVGVA----TELGGVIKPTKAVSMFQTLAIKNGA 168
           +    ++    Q  +       +  ++ G          G      A+      A + G 
Sbjct: 118 DPNLVELTRPEQFRKLAPE-GVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQRMGV 176

Query: 169 VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQ 228
                     V+ +          VT++G+ +  ++  + AGA  G+ +      +  ++
Sbjct: 177 KFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL----DFKNQLR 232

Query: 229 AVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGG----- 283
               T+ +  +K    A Y    + P   +    + +  P  E  G IKI          
Sbjct: 233 PTAWTLVHIALKPEERALYK---NIPVIFNIERGF-FFEPD-EERGEIKICDEHPGYTNM 287

Query: 284 -------YPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFV 336
                      P  +   P      ++  ++      +        ++C  + T + +F+
Sbjct: 288 VQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQ-LADRPFSFARICWCADTANREFL 346

Query: 337 IDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFR 387
           ID         +V+  G SG GFK  P++G ++ D +  G+      +  +
Sbjct: 347 IDRHPQY--HSLVLGCGASGRGFKYLPSIGNLIVDAME-GKVPQKIHELIK 394

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score =  146 bits (371), Expect = 8e-40
 Identities = 75/447 (16%), Positives = 137/447 (30%), Gaps = 78/447 (17%)

Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRT---IRATY 59
              +FD +VVGAG++G +AAY L      + L+++        G S    R+    R  +
Sbjct: 20  HMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA-GHAPGSGDS---GRSMAAFRTFF 75

Query: 60  PEDYYHPMVLESCLLWEQAQSEIGYKVYFKA--HQFDMGPSENKSLRSVIASCRKNSVPH 117
                  +   +  L+E AQ   G  +      + F       + +   +    +    +
Sbjct: 76  SSTMNRLVAGSTVRLFEDAQ-RGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDY 134

Query: 118 QVLDCRQVLEKYSGRIEI----------PENWVG-VATELGGVIKPTKAVSMFQTLAIKN 166
            ++   ++  +      +            +  G V     G +   K V  +   A   
Sbjct: 135 LIIPPEELERRLGMNTRVSDGEEAEVLGVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGA 194

Query: 167 GAVLRDNMEVKTVLKVKDAVKG------------GVTVVTSNGEKFWGKKCVV-TAGAWV 213
           G        V  V        G                V S+G +    + +V  AG W 
Sbjct: 195 GVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWS 254

Query: 214 GKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYP 273
            +L+  + G++   +  +  V                GD    A  G P +   P     
Sbjct: 255 NRLLNPL-GIDTFSRPKKRMVFRVSASTEGLRRIMREGDL---AGAGAPPLIILPKRVL- 309

Query: 274 GLIKIALHGGY---PCDPDRRPWGPG--------LLLDSLKEWIQGRF-----AGRVDS- 316
            +      G +     D   RP+               ++   +         A      
Sbjct: 310 -VRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGW 368

Query: 317 NGPVATQLCMYSITPDEDFVIDFLGGEFGED-VVVAGGFSGHGFKMAPAVGRILADLVLS 375
            G        Y I+ D + V+     E  E  +VVA G SG G   + ++GR+ A + L 
Sbjct: 369 AGH-------YDISFDANPVV----FEPWESGIVVAAGTSGSGIMKSDSIGRVAAAVALG 417

Query: 376 GEAQ--------GVELQHFRISRFKEN 394
            E+          V+       R+++ 
Sbjct: 418 MESVELYGGVEMPVKWMGLEGRRYEQE 444

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score =  137 bits (347), Expect = 1e-36
 Identities = 83/413 (20%), Positives = 142/413 (34%), Gaps = 60/413 (14%)

Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAKRGQKT--LLLEQFDFLHHRGSSHGESRT---IRAT 58
           P + +D I+VG G  G + AY LAK    T   +LE+  +L    +    +R    IR+ 
Sbjct: 18  PKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWL----AGGNMARNTTIIRSN 72

Query: 59  YPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAH-QFDMGPSEN--KSLRSVIASCRKNSV 115
           Y  D    +  +S  LWEQ   ++ Y   F      ++  +    +     + + + N V
Sbjct: 73  YLWDESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGV 132

Query: 116 PHQVLDCRQVLEKYSG-RIEIPENWV---GVATELGGVIKPTKAVSMFQTLAIKNGAVLR 171
             + LD  QV E            +           G+ K       F   A + G  + 
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDII 192

Query: 172 DNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVE 231
            N EV   +K  + V G   V T+ G      K  +        L +   G ELPIQ+  
Sbjct: 193 QNCEVTGFIKDGEKVTG---VKTTRGT-IHAGKVALAGAGHSSVLAEMA-GFELPIQSHP 247

Query: 232 TTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRR 291
                  + E            P+       ++Y + + +  G +   + G      +  
Sbjct: 248 LQAL---VSE------LFEPVHPTVVMSNHIHVYVSQAHK--GEL---VMGAGIDSYN-- 291

Query: 292 PWGPGLLLDSLKEWIQG---RF-----AGRVDS-NGPVATQLCMYSITPDEDFVIDFLGG 342
            +G       ++E +      F     A  + +  G           T D   +I     
Sbjct: 292 GYGQRGAFHVIQEQMAAAVELFPIFARAHVLRTWGGI-------VDTTMDASPII----S 340

Query: 343 EFG-EDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN 394
           +   +++ V  G+   GFK  P  G  LA  + + E      + F + RF+  
Sbjct: 341 KTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPH-ELNKPFSLERFETG 392

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score =  131 bits (332), Expect = 7e-35
 Identities = 62/407 (15%), Positives = 108/407 (26%), Gaps = 56/407 (13%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT---IRATYPED 62
            + D +V+GAGI G+S  Y L+  G+  +L  +          H   R+       Y   
Sbjct: 8   IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP-----GYHSTGRSAAHYTVAYGTP 62

Query: 63  YYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENK--SLRSVIASCRKNSVPHQVL 120
               +   S   ++   +              +    +    LR    S +      ++L
Sbjct: 63  QVRALTAASRAFFDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLL 122

Query: 121 DCRQVLEKYSGRIEIPENWVGVA-TELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTV 179
           D  Q        +   +   G      G  I        +     +N   +  N E   +
Sbjct: 123 DAEQACSIVPV-LR-RDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEI 180

Query: 180 LKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRI 239
            +       G   V  +   +     V  AGAW   +        L +Q    +   +  
Sbjct: 181 RR-----VDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAP 235

Query: 240 KEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLL 299
             G +       D+P   S  +   Y  P  +   L+      G P + D          
Sbjct: 236 PPGIDC-----HDWPMLVSLDE-SFYLKP--DAGMLL------GSPANADPVEAHDVQPE 281

Query: 300 DSLKEWIQGRF-------AGRVDS--NGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVV 350
                               R +    G         S   D D V  +      E    
Sbjct: 282 QLDIATGMYLIEEATTLTIRRPEHTWAGL-------RSFVADGDLVAGYAANA--EGFFW 332

Query: 351 AGGFSGHGFKMAPAVGRILADLVLSGE------AQGVELQHFRISRF 391
                G+G + + A+G   A L+            G++       R 
Sbjct: 333 VAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRL 379

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score =  128 bits (324), Expect = 1e-33
 Identities = 75/412 (18%), Positives = 133/412 (32%), Gaps = 64/412 (15%)

Query: 1   MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           +      ++ +V+G GI+GS+ AY LAK  + T L E    +  R +S      + A   
Sbjct: 11  IRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFES-GTMGGRTTSAAAG-MLGAHAE 68

Query: 61  EDYYHPM---VLESCLLWEQAQSEI----GYKVYFKAH---QFDMGPSENKSLRSVIASC 110
            +         + S  L++    E+    G  +        +      +   LR +    
Sbjct: 69  CEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDD-- 126

Query: 111 RKNSVPHQVLDCRQVLEKYSGRIEIPENWVG-VATELGGVIKPTKAVSMFQTLAIKNGAV 169
                        +VLEK         +  G    +    ++P      +   A   GA 
Sbjct: 127 ---LDSVSWYSKEEVLEKEPY---ASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAE 180

Query: 170 LRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA 229
           + ++  V  V +      G    + +     W    VV +G W G   K++ GL      
Sbjct: 181 IFEHTPVLHVER-----DGEALFIKTPSGDVWANHVVVASGVWSGMFFKQL-GLNNAFLP 234

Query: 230 VETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY--PCD 287
           V+             + +           +   YI    S    G + +   G    P D
Sbjct: 235 VKGECL---------SVWNDDIPLTKTLYHDHCYIVPRKS----GRLVV---GATMKPGD 278

Query: 288 PDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCM-------YSITPDEDFVIDFL 340
               P   G  L+S+ +  +           P    + +          T D    I   
Sbjct: 279 WSETPDLGG--LESVMKKAKTML--------PAIQNMKVDRFWAGLRPGTKDGKPYIGRH 328

Query: 341 GGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFK 392
                  ++ A G   +G  +APA G +++DL+++ E     L  FRI R +
Sbjct: 329 PE--DSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRKE 378

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score =  120 bits (304), Expect = 8e-31
 Identities = 95/414 (22%), Positives = 163/414 (39%), Gaps = 70/414 (16%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH--GESRTIRATYPEDY 63
           EK +++V+G GI+G + A++LAKRG++  ++E+  F+    +         IR  + ++ 
Sbjct: 4   EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEK-RFIGSGSTFRCGT---GIRQQFNDEA 59

Query: 64  YHPMVLESCLLWEQAQSE--IGYK---VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ 118
              ++  S  LW++   E    +K     F  +       E K+ +  I    K  VP +
Sbjct: 60  NVRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYD----DEEVKTFKRNIEIQNKFGVPTK 115

Query: 119 VLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKT 178
           ++   +  E     ++I E          G   P +A + F   A + GA L +  EVK 
Sbjct: 116 LITPEEAKEIVPL-LDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKG 174

Query: 179 VLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI-TGLELPIQAVETTVCYW 237
            L   + +KG   V T+ G        V    AW   +        ++PI+  +      
Sbjct: 175 FLIENNEIKG---VKTNKGI-IKTGIVVNATNAWANLINAMAGIKTKIPIEPYK--HQAV 228

Query: 238 ---RIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPW- 293
               IK G      +        S+   + Y T    + G     + GG     +  P  
Sbjct: 229 ITQPIKRGTINPMVI--------SFKYGHAYLTQ--TFHGG----IIGGI--GYEIGPTY 272

Query: 294 --GPGLLLDSLKEWIQG---RF-----AGRVDS-NGPVATQLCMYSITPDEDFVIDFLGG 342
              P    + L+E                 + +  G        Y+ TPD +  I    G
Sbjct: 273 DLTPT--YEFLREVSYYFTKIIPALKNLLILRTWAGY-------YAKTPDSNPAI----G 319

Query: 343 EFGE--DVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN 394
              E  D  +A GFSGHGF MAPAVG ++A+L+  G+ + + ++ +   RF+  
Sbjct: 320 RIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTK-LPVEWYDPYRFERG 372

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 92.1 bits (227), Expect = 1e-20
 Identities = 61/384 (15%), Positives = 104/384 (27%), Gaps = 34/384 (8%)

Query: 3   FPGEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYP 60
           F  E FD++V+GAG MG++ A+ L +   G+  LL+E+    +  G++        A   
Sbjct: 32  FTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDI 91

Query: 61  EDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL 120
                     +      A             + +  P  +                  + 
Sbjct: 92  PAGQEAQAEWTREQLLGALGSGKTL------EVEDRPLLHLL---------PAGEGSGLT 136

Query: 121 DCRQVLEKYSGRIEI--PENWVGVATE-LGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVK 177
                L  +   + +  P        +      +P     +    AI  GA L  N   +
Sbjct: 137 PTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAE 196

Query: 178 TVLKV----KDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETT 233
            V       +  V     +V     +      +V AGA    LV++  GL          
Sbjct: 197 LVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPALVEQGLGLHTRHGRAYRQ 256

Query: 234 VCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYP-GLIKIALH-GGYPCDPDRR 291
                +  G +               G   +        P G         G P    R 
Sbjct: 257 FPRLDLLSGAQTPVLRASGLTLRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRE 316

Query: 292 -PWGPGLLLDSLKEWIQGRFA-GRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVV 349
                  L+D++          GR  ++ P    L +    PD          E    + 
Sbjct: 317 LLEDLVGLMDAVPALAGEGLELGRSSADVP-GAWLALPGGRPDAPPQA----EELAPGLH 371

Query: 350 VAGGFSGHGFKMAPAVGRILADLV 373
           +  G       +  A    LA  V
Sbjct: 372 LLLGGPLADT-LGLAAAHELAQRV 394

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 65/425 (15%), Positives = 130/425 (30%), Gaps = 102/425 (24%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF-------------DFLHHRGSSHGESRT 54
            ++++GAGI+G++ A +L  RG     +L+Q                +     S   +  
Sbjct: 6   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASF 65

Query: 55  IRAT---YPEDYYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENK--SLRSVIAS 109
            + T             L           E G   + +    ++  +E +   L+  +  
Sbjct: 66  AKYTVEKLLS-------LT----------EDGVSCFNQVGGLEVATTETRLADLKRKLGY 108

Query: 110 CRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAV 169
                +  ++L   +  E Y   ++      G+     G+    +AV +        G  
Sbjct: 109 AAAWGIEGRLLSPAECQELYPL-LDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVT 167

Query: 170 LRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQA 229
            R +  V  + +    V G   V T++G        VV+   + G  +  + G+ +P+  
Sbjct: 168 YRGSTTVTGIEQSGGRVTG---VQTADGV--IPADIVVSCAGFWGAKIGAMIGMAVPLLP 222

Query: 230 VETTVCYWRIKEGNEADYAVGGDFPSFASYGD-PYIYGTPSLEYPG------------LI 276
           +                Y      P+     D P     P L +               I
Sbjct: 223 LAHQ-------------YVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREHGDRYGI 269

Query: 277 KIALHGGY-----PCDPD----RRPWG-PGLLLDSLKEWIQGRFAGRVDSNG---PVATQ 323
                G Y     P D D      P       + S  ++    F    ++     P    
Sbjct: 270 -----GSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFTLEDFLPAWEATKQLLPALAD 324

Query: 324 L-------CMYSITPDEDFVIDFLGGEFGEDVVVAGGF--SGHGFKMAPAVGRILADLVL 374
                    ++S TPD   ++       GE   + G +         +  V + +A+L+ 
Sbjct: 325 SEIEDGFNGIFSFTPDGGPLL-------GESKELDGFYVAEAVWVTHSAGVAKAMAELLT 377

Query: 375 SGEAQ 379
           +G ++
Sbjct: 378 TGRSE 382

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Length = 676

 Score = 60.7 bits (146), Expect = 4e-10
 Identities = 53/410 (12%), Positives = 113/410 (27%), Gaps = 48/410 (11%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
           +  ++G GI  +  +  L +RG +  L    +       + G  +         +   + 
Sbjct: 274 EAAIIGGGIASALLSLALLRRGWQVTLYCADE--APALGASGNRQGALYPLLSKHDEALN 331

Query: 69  LESCLLWEQAQSEIGYKVYFKAHQF--DMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
                 +  A+           H +        ++  +  IA      +P ++    +  
Sbjct: 332 RFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEA- 390

Query: 127 EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV 186
                   +  N  G+    GG + P +       LA + G  +    +++   +  D  
Sbjct: 391 NAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDD-- 448

Query: 187 KGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEAD 246
                +  +  ++      V+  G  + +  +      LP+ +V   V +          
Sbjct: 449 --CWLLNFAGDQQATHSVVVLANGHQISRFSQ---TSTLPVYSVAGQVSHIPTTPELAE- 502

Query: 247 YAVGGDFPSFASYGDPYIYGTPSLEYPGLIKI-ALHGGYPCDPDRRPWGPGLLLDSLKEW 305
                         D Y+  TP         I A +     D              L + 
Sbjct: 503 -------LKQVLCYDGYL--TPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDC 553

Query: 306 --------------IQGRFAGRVDSNG--PVATQLCMYSITPDEDFVI-----DFLGGEF 344
                          + R   R  +    P+   +  Y  T  E   +     + +    
Sbjct: 554 FPQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPV 613

Query: 345 GEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVE---LQHFRISRF 391
            +D+ +       G   AP    ILA   +S E   ++   L     +R 
Sbjct: 614 FDDLFMFAALGSRGLCSAPLCAEILAAQ-MSDEPIPMDASTLAALNPNRL 662

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Length = 689

 Score = 60.7 bits (146), Expect = 4e-10
 Identities = 65/426 (15%), Positives = 107/426 (25%), Gaps = 68/426 (15%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
           D+ ++G GI+ +  A  L +RG    L           S + +     A YP        
Sbjct: 266 DIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQGASGNRQG----ALYPLLNGKNDA 321

Query: 69  LESCLL--------WEQAQSEIGYKVYFKAHQFDMGPSENKSLRSV--IASCRKNSVPHQ 118
           LE+                 E G     +         ++KS   +  +   +      +
Sbjct: 322 LETFFTSAFTFARRQYDQLLEQGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQWPVEFAE 381

Query: 119 VLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKT 178
            +   Q+ E                   GG + P+        LA +NG       E++ 
Sbjct: 382 AMSREQLSELAGLDCAHDGIHY----PAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQR 437

Query: 179 VLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWR 238
           +      +     +     +       V+ A        ++   L L     + +     
Sbjct: 438 L----KRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTT 493

Query: 239 IKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKI-ALHGGYPCDPDRRPWGPGL 297
                                 D Y+  TP         I A +       D R      
Sbjct: 494 PVLSQ----------LQQVLCYDGYL--TPVNPANQHHCIGASYQRGDIATDFRLTEQQE 541

Query: 298 LLDSLK--------------EWIQGRFAGRVDSN------GPVA---------TQLCMYS 328
             + L                  Q R   R          G V            L    
Sbjct: 542 NRERLLRCLPQVSWPQQVDVSDNQARCGVRCAIRDHLPMVGAVPDYAATLAQYQDLSRRI 601

Query: 329 ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVE---LQH 385
               E  V D        ++ + GG    G   AP V  ILA   + GE   ++   L  
Sbjct: 602 QHGGESEVNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQ-MFGEPLPLDAKTLAA 660

Query: 386 FRISRF 391
              +RF
Sbjct: 661 LNPNRF 666

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
           K+DV+++G G  GSSAAYQL++RG K LL++   +
Sbjct: 5  LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 36/259 (13%), Positives = 75/259 (28%), Gaps = 73/259 (28%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRA------TYPED 62
             +VVGAG+ G  A   LA+ G + ++LE+   +   G   G    +        T    
Sbjct: 2   RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI---G---GRFTNLPYKGFQLSTGAL- 54

Query: 63  YYHPMVLESCLLWEQAQSEIG-----------YKVYFKAHQFDMG-------PSENKSLR 104
           +  P   +           +G            K+ ++   F            E     
Sbjct: 55  HMIPHGEDG--PLAHLLRILGAKVEIVNSNPKGKILWEGKIFHYRESWKFLSVKEKAKAL 112

Query: 105 SVIASCRKNSVPHQVLDCRQVLEKYSGRIE---------------IPENWV--------- 140
            ++A  R N +P + +   + +++  G  E               +  + +         
Sbjct: 113 KLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEI 172

Query: 141 -------GVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV 193
                  G     GG           + + ++N   +    EV  +      ++    V 
Sbjct: 173 RAALRWGGPGLIRGGCKAVIDE---LERIIMENKGKILTRKEVVEIN-----IEEK-KVY 223

Query: 194 TSNGEKFWGKKCVVTAGAW 212
           T + E++     +   G  
Sbjct: 224 TRDNEEYSFDVAISNVGVR 242

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRGSS 48
          M    E FD+IV+G G  GS+ A  +A RG + LLLE+  F  H  G S
Sbjct: 1  MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGES 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 67/407 (16%), Positives = 110/407 (27%), Gaps = 135/407 (33%)

Query: 26  LAKRGQKTLLLEQFDFLHHRGSSHGESRT---------------------IRATYPE--- 61
           L        +LE    L ++   +  SR+                         Y     
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 62  ---DYYHPMVLE----SC--LL-------WEQAQSEIGYKVYFKAHQFDMGPSENKSLRS 105
              +  +         SC  LL        +   +     +    H   + P E KSL  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 106 VIASCRKNSVPHQVLD-----CRQVLEKYSGRIEIPENWVGVATE-LGGVIK-------P 152
               CR   +P +VL         + E     +   +NW  V  + L  +I+       P
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 153 TKAVSMFQTLAIKNGAVLRDNMEVKT-VLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA 211
            +   MF  L++        +  + T +L +                  W          
Sbjct: 369 AEYRKMFDRLSV-----FPPSAHIPTILLSL-----------------IWFDVIKSDVMV 406

Query: 212 WVGKLVKRITGLELPIQAVETTV----CYWRIKEGNEADYAV---------------GGD 252
            V KL K    L +  Q  E+T+     Y  +K   E +YA+                 D
Sbjct: 407 VVNKLHKY--SL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 253 FPSFASYGDPYIYGTPSLEYPGLIKIALHGGY---PCDPDRRPWG-PGLLLDSLKEWIQG 308
                 Y D Y Y               H G+     +   R      + LD  + +++ 
Sbjct: 464 LI--PPYLDQYFY--------------SHIGHHLKNIEHPERMTLFRMVFLD-FR-FLEQ 505

Query: 309 --RFAG----RVDSNGPVATQLCMYS--ITPDEDF-------VIDFL 340
             R          S      QL  Y   I  ++         ++DFL
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 45/245 (18%), Positives = 74/245 (30%), Gaps = 55/245 (22%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESR---TIRATYPED 62
              D IV+GAG++G + A  LA  G + L+ E          +   SR    I A     
Sbjct: 3   TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEA----AEGIGTGTSSRNSEVIHAGI--- 55

Query: 63  YYHP------MVLESCLLWEQAQSEIGYKVYFKAHQFDM----------GPSENKSLRSV 106
           YY        + +    L  +         Y  A                 +E   L S+
Sbjct: 56  YYPADSLKARLCVRGKHLLYE---------YCAARGVPHQRLGKLIVATSDAEASQLDSI 106

Query: 107 IASCRKNSVPH-QVLDCRQVLEKY-----SGRIEIPENWVGVATELGGVIKPTKAVSMFQ 160
                 N V   Q +D             +  +  P           G++     +  +Q
Sbjct: 107 ARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPS---------TGIVDSHALMLAYQ 157

Query: 161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGK-KCVVT-AGAWVGKLVK 218
             A  +GA L  +  +       +   GG  +     E      + ++  AG     L +
Sbjct: 158 GDAESDGAQLVFHTPLIAGRVRPE---GGFELDFGGAEPMTLSCRVLINAAGLHAPGLAR 214

Query: 219 RITGL 223
           RI G+
Sbjct: 215 RIEGI 219

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRGSS 48
          EK DV+V+GAG  G+ AA  + K G K  ++E+  F     G S
Sbjct: 4  EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGES 47

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL-HHRG 46
           +  V ++G G  GS A   L K G    + E+  F  +  G
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ-FDFLHHRGSSHGESRTIRATYPEDYY 64
            K+DV++VG+G +G + A +L   G K  + +        +  +H ++        + + 
Sbjct: 45  IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 104

Query: 65  HP 66
           + 
Sbjct: 105 NV 106

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 50/370 (13%), Positives = 105/370 (28%), Gaps = 48/370 (12%)

Query: 10  VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
           V+V+GAG++G S A  + +R    L          R +    +           + P + 
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAG-----LWQPYLS 57

Query: 70  ESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRK----NSVPHQVLDCRQV 125
           +     E   S+  +             +    L S      +     S    VL  R++
Sbjct: 58  DPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKL 117

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
             +    +++  ++         +++    +        + G         + V   ++ 
Sbjct: 118 TPR---ELDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKF----FQRKVESFEEV 170

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
            + G  V+            V   G W G L +     +  +Q     +           
Sbjct: 171 AREGADVI------------VNCTGVWAGALQR-----DPLLQPGRGQIMKVD---APWM 210

Query: 246 DYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSLKE 304
            + +    P    Y  PYI        PG   + L G +   +            +++ E
Sbjct: 211 KHFILTHDPERGIYNSPYI-------IPGTQTVTLGGIFQLGNWSELNNIQD--HNTIWE 261

Query: 305 WIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLG-GEFGEDVVVAGGFSGHGFKMAP 363
               R    + +   +  +     + P      + L  G    +V+   G  G+G  +  
Sbjct: 262 GCC-RLEPTLKNARIIGERTGFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHW 320

Query: 364 AVGRILADLV 373
                 A L 
Sbjct: 321 GCALEAAKLF 330

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 16/92 (17%), Positives = 30/92 (32%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY 63
           G     +V+G G   + +A +L + G +TL+LE     +  G        +        
Sbjct: 2  NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61

Query: 64 YHPMVLESCLLWEQAQSEIGYKVYFKAHQFDM 95
          +     E+ L        +   +   A   D 
Sbjct: 62 WFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDR 93

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Length = 637

 Score = 51.3 bits (124), Expect = 4e-07
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          M +  ++FDV+V+G G  G  AA   A+ G KT + 
Sbjct: 21 MAWVVDEFDVVVIGGGHAGIEAALAAARMGAKTAMF 56

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 50.9 bits (121), Expect = 4e-07
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 5  GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          G++   +V+G+G  G+ AA +L + G  T ++E 
Sbjct: 9  GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 42

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* Length = 443

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           V VVGAG+ GS AA+ L + G    L E
Sbjct: 3  RVNVVGAGLAGSEAAWTLLRLGVPVRLFE 31

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
           P +  DV+VVG+G  G SAA      G K +L+E+   +   G++
Sbjct: 123 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI--GGNA 165

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 50.5 bits (120), Expect = 5e-07
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 2  EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +   + FD ++VGAG  GS  A +LA  GQ+ L++++
Sbjct: 24 QQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 49.9 bits (118), Expect = 9e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42
          M  P    DV+V+GAG  G  AA +L +  G   ++++  +  
Sbjct: 4  MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +D IVVG G  G  AA  L   G+K LLLE
Sbjct: 2  YDAIVVGGGFSGLKAARDLTNAGKKVLLLE 31

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          P  + DV +VGAG  G +AA  L K G    ++E
Sbjct: 2  PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIE 35

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +   +++VGAG  G+    QLA++G +  +++Q
Sbjct: 2  KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQ 34

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
                V V+GAG+ G +AAY+L   G    + E
Sbjct: 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE 43

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Length = 232

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
            + V++VGAG  G+  A+ LA++G +  LL
Sbjct: 2  AAYQVLIVGAGFSGAETAFWLAQKGVRVGLL 32

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Length = 561

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          ++ D++V+G GI G+  A     RG +T L+E  DF
Sbjct: 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
           E  DV+++G+G  G +AA      G K +LLE+       G++
Sbjct: 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP--GGNT 165

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 36/257 (14%), Positives = 66/257 (25%), Gaps = 60/257 (23%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ-----------------FD----------- 40
             +V+GAG+ G  +A +L+K G +  + E+                              
Sbjct: 2   KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGP 61

Query: 41  --FLHHRGSSHGESRTIRATYPEDYYHPMVLESC--------LLWEQAQSEIGY----KV 86
              L         S  I  +       P+   +         + +    S + Y    K+
Sbjct: 62  GGPLACFLKEVEASVNIVRSEMTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRMKI 121

Query: 87  YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIP---------- 136
                          SL++ I S   +    +  D            E+P          
Sbjct: 122 ALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIEN 181

Query: 137 -ENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS 195
              + G     GG      A    +T+   NG  +    EV  +L       G    + +
Sbjct: 182 MYRFGGTGIPEGGCKGIIDA---LETVISANGGKIHTGQEVSKILIENGKAAG----IIA 234

Query: 196 NGEKFWGKKCVVTAGAW 212
           +         +   G  
Sbjct: 235 DDRIHDADLVISNLGHA 251

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Length = 571

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E+ D++++G GI G+  A Q A  G KT L+E  DF
Sbjct: 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 16/70 (22%), Positives = 32/70 (45%)

Query: 2  EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE 61
           F GE +DVI++G G+     +  L+  G+K L+L++  +     +S   +       P+
Sbjct: 15 YFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPK 74

Query: 62 DYYHPMVLES 71
          +       E+
Sbjct: 75 ENIPSKYGEN 84

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +D I+VG+G+ G+  A +L K  +K L++E+
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEK 32

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Length = 641

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          +      +DVIVVGAG  G  AA  +A+ G   LL+
Sbjct: 15 VPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLI 50

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           P E   V+VVGAG  G +A+    K G   +L++
Sbjct: 118 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVD 151

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Length = 651

 Score = 47.1 bits (113), Expect = 8e-06
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          M +P   FDVI++G G  G+ AA   A+ GQ+TLLL
Sbjct: 23 MFYPDP-FDVIIIGGGHAGTEAAMAAARMGQQTLLL 57

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           K DV+VVG GI G +AA  L   G   ++LE
Sbjct: 3  NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLE 34

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
             +V VVG GI G + A+ L  RG   +LLE
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE 46

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
              ++++GAG  G  AA +L + G K   L 
Sbjct: 8  LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLY 39

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Length = 501

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E  D+IV+G GI G+  A   A RG   L+LE  D 
Sbjct: 2  ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDL 37

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESRTIRATY 59
          M+    +FD+ VVG+G  G + A ++A +  ++ L+LE+     H G   G + +     
Sbjct: 1  MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRP---HIG---GNAYSEAEPQ 54

Query: 60 PEDYYHP 66
               H 
Sbjct: 55 TGIEVHK 61

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
           + DV+V G GI G +A+ + A+ G   L+LE+    
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
           + ++GAG  G +A   L + G     +LE
Sbjct: 8  RIAIIGAGPAGLAAGMYLEQAGFHDYTILE 37

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
              +DVIV+G G  G +A   L   G KTLLLE
Sbjct: 36 KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLE 69

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
                V+V+G G  G  +A++L K G K  +LE
Sbjct: 8  VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLE 41

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
          E++DVIV+G G+     +  ++  G+K L +++  +
Sbjct: 5  EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPY 40

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
                V++VGAG+ G SAAY LA  G +  +LE
Sbjct: 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE 63

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 39/248 (15%), Positives = 62/248 (25%), Gaps = 47/248 (18%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLE--------------QFDFLHHRGSS--H 49
           K  VI++GAGI G  AA  L + G Q  L+LE                   +  G+S  H
Sbjct: 8   KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHH 67

Query: 50  GESRTIRATYPEDYYHPMVLESCLL-----------------WEQAQSEIGYKVYFKAHQ 92
                                  +                   ++   EI      K  +
Sbjct: 68  DTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGRVDHDKELLLEIVDNEMSKFAE 127

Query: 93  FDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATEL------ 146
            +       S  S      K  +  +       +          E W G+  +L      
Sbjct: 128 LEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDT 187

Query: 147 -----GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFW 201
                G         S+ Q +A               V  +       VTV   +G  + 
Sbjct: 188 YFGHQGRNAFALNYDSVVQRIA--QSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245

Query: 202 GKKCVVTA 209
               ++T 
Sbjct: 246 ADYVIITV 253

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          EK DV+++GAG  G   A +  KRG++ L+++ 
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDH 58

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +  + I++GAG  G   A QLAK G+   + + 
Sbjct: 3  QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDN 35

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 3/110 (2%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            V++VGAG+ GS  A  L ++    L L  +D     G   G   T  + +       + 
Sbjct: 3   QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSG---GRMTTACSPHNPQCTADLG 59

Query: 69  LESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ 118
            +          +             + P  +     V+     N V  Q
Sbjct: 60  AQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQ 109

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 5  GEKFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLE 37
            K  V+++G GI G +AA+ + K         +  L+E
Sbjct: 3  DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVE 41

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           DV++ G GI G+  AY L ++G + +++EQ
Sbjct: 7  IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
            +DVIV+G G  G  AA   A+ G   LLL+
Sbjct: 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 56

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          PG+     V G G  G +AA  L + G    L E+   L
Sbjct: 8  PGKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +  DV+V+G G  G SA Y L + G   ++L+
Sbjct: 2  DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILD 33

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 9  DVIVVGAGIMGSSAAYQLAKR--GQKTLLLE 37
           +++VG GI G +AAY   +        LLE
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLE 36

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 12/81 (14%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP 66
            DV+VVGAG  G SAAY+++K    +  ++E       +  S G      A      +  
Sbjct: 40  TDVVVVGAGSAGLSAAYEISKNPNVQVAIIE-------QSVSPGG----GAWLGGQLFSA 88

Query: 67  MVLESCLLWEQAQSEIGYKVY 87
           M++         +  + Y   
Sbjct: 89  MIVRKPAHLFLDEIGVAYDEQ 109

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF 41
            +DVIV+G GI     +  L+  G+K L +++ D 
Sbjct: 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 45

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES 52
           +  V+V+G+G++G S+A  LA++G    +L + D      S    S
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHILAR-DLPEDVSSQTFAS 50

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* Length = 540

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLL 35
          P    DV+++G+G  G S A +LA + Q  +L
Sbjct: 5  PEHSCDVLIIGSGAAGLSLALRLADQHQVIVL 36

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           DV+VVGAG  G +AA + ++ G + +LL++
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDE 159

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           + DV+VVGAG+ G S A  LA++G + L++E+
Sbjct: 4  HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVER 36

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLL 36
          M+ P  +FD +V+GAG  G  AA Q+++ GQ   LL
Sbjct: 1  MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALL 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	100.0
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	100.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	100.0
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	100.0
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	100.0
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	100.0
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	100.0
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	100.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	100.0
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	100.0
3dme_A	369	Conserved exported protein; structural genomics, P	100.0
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	100.0
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	100.0
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	100.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.97
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.97
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.96
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.76
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.75
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.72
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.7
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.69
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.68
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.67
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.67
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.67
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.67
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.66
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.65
3atr_A	453	Conserved archaeal protein; saturating double bond	99.63
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.63
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.63
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.62
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.6
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.6
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.59
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.56
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.55
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.55
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.55
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.55
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.54
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.53
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.51
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.51
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.49
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.49
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.48
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.48
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.47
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.47
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.44
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.43
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.43
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.43
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.42
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.42
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.41
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.41
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.41
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.39
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.38
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.37
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.37
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.36
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.35
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.35
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.34
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.34
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.34
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.33
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.32
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.31
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.3
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.3
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.3
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.29
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.28
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.28
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.28
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.28
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.28
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.28
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.27
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.27
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.27
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.26
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.26
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.25
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.25
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.25
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.24
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.23
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.23
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.22
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.22
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.19
4dna_A	463	Probable glutathione reductase; structural genomic	99.19
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.19
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.19
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.18
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.18
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.17
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.16
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.16
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.15
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.15
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.14
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.13
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.13
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.12
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.12
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.12
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.1
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.09
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.09
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.08
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.08
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.07
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.06
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.06
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.05
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.05
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.05
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.04
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.03
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.03
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.03
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.03
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.02
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	99.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.97
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.97
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.96
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.96
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.96
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.95
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.95
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.94
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.93
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.93
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.93
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.92
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.92
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.9
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.9
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.89
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.89
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.88
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.88
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.87
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.87
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.87
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.85
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.82
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.81
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.81
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.8
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.8
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.8
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.79
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.79
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.76
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.73
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.72
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.7
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.7
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.7
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.69
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.68
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.67
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.67
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.67
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.65
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.65
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.58
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.56
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.56
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.53
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.52
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.51
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.51
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.5
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.5
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.46
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.44
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.41
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.4
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.39
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.39
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.38
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.36
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.33
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.33
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.3
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.28
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.28
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.28
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.28
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.27
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.27
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.25
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.24
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.22
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.17
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.14
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.09
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.09
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.07
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.04
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.03
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.01
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.0
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.99
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.99
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.97
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.94
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.84
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.83
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.79
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.79
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.76
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.75
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.75
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.72
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.69
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.68
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.68
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.68
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.65
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.64
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.64
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.62
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.6
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.58
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.58
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.54
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.48
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.47
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.45
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.37
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.13
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.11
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.95
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.9
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.74
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.67
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.57
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.49
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.46
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.42
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.39
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.25
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.18
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.14
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.1
4fk1_A	304	Putative thioredoxin reductase; structural genomic	96.04
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.01
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.93
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.8
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.76
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.68
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.59
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.53
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.51
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.51
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.5
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.5
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.45
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.43
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.37
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.33
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.32
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.31
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.3
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.2
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.2
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.15
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.12
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.1
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.09
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.06
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.05
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.04
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.96
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.93
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.89
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.89
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.86
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.83
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.82
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.82
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.81
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.8
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.79
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.78
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.72
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.7
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.7
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.62
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.58
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.57
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.55
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.52
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.52
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.51
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.41
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.38
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.37
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.35
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.35
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.34
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.31
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.29
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.27
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.2
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.18
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.15
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.15
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.07
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.05
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.95
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	93.94
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.94
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.91
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	93.91
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.9
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.9
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.88
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.87
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.86
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.81
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.79
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.78
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.76
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.72
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.63
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	93.63
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.63
1fec_A	490	Trypanothione reductase; redox-active center, oxid	93.62
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.62
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.57
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.57
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.56
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.55
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.53
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.44
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.4
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.34
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.34
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	93.32
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.3
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.29
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.29
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.24
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.2
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.2
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.18
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.17
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.14
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.13
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.11
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.1
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.08
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.04
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.02
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.01
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.98
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.96
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	92.87
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.86
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.83
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.78
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.75
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.72
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	92.67
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	92.65
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.64
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.64
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	92.64
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.62
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	92.6
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.6
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.59
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.54
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.53
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.52
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.49
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.46
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.45
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.41
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.4
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.39
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	92.28
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	92.27
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.24
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.22
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.22
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	92.19
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.19
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.16
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	92.15
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.14
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.11
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.05
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.01
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.96
4dna_A	463	Probable glutathione reductase; structural genomic	91.95
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	91.9
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.85
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.83
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.82
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.81
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.81
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.78
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.7
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	91.68
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.64
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.62
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.59
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.5
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.48
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.48
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.48
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.45
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	91.44
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.4
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.33
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.3
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.26
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	91.18
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	91.15
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	91.08
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	91.05
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.95
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	90.92
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.86
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	90.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.82
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.82
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	90.79
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	90.79
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.73
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.72
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	90.72
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.66
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.63
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.61
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	90.54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.54
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.49
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.47
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	90.47
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	90.37
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	90.33
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.31
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	90.25
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	90.23
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	90.22
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	90.18
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	90.17
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	90.17
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	90.05
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	89.97
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	89.91
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.9
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	89.8
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	89.78
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	89.77
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	89.76
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	89.7
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	89.68
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	89.64
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	89.61
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	89.59
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	89.48

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=100.00  E-value=6.1e-46  Score=348.69  Aligned_cols=365  Identities=17%  Similarity=0.187  Sum_probs=282.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +.++||+|||||++|+++|++|+ +|++|+|||++...+ .++|..+.+.+...+....+..+...+.+.|.++.+..+.
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g-~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPG-YHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCE   84 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTT-SSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCCTTSCS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcc-ccccccccceeecccCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            34689999999999999999999 699999999986554 3566677788877777766778888888888887655432


Q ss_pred             -eeEEeeceeeeCCCC-hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           85 -KVYFKAHQFDMGPSE-NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        85 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                       ..+...+.+.....+ ...+....+.+...+++.+.++.+++.+.+|. +..+....+++.+.++.++|..++..|.+.
T Consensus        85 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (381)
T 3nyc_A           85 HPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPV-LRRDKVFGATYDPTGADIDTDALHQGYLRG  163 (381)
T ss_dssp             SCSEEECCEEEECSSCCHHHHHHHHHHHHHHCTTCEEECHHHHHHHSTT-BCGGGCCCEEEETTCEEECHHHHHHHHHHH
T ss_pred             cccccccceEEEechHHHHHHHHHHHHHHHcCCCcEEeCHHHHHHhCCC-cccccceEEEEcCCCceECHHHHHHHHHHH
Confidence             235666766665433 34456667777788888999999999999887 543335578899999999999999999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc-cceeEEEEEEEEEEecC
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE-LPIQAVETTVCYWRIKE  241 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~-~~~~~~~g~~~~~~~~~  241 (413)
                      +++.|++|+++++|++|..  +  ++.+.|++.+| +++||.||+|+|.|+..+.+.+ +.. +|+.|.+++++.++.++
T Consensus       164 a~~~Gv~i~~~~~V~~i~~--~--~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~-g~~~~~~~p~rg~~~~~~~~~  237 (381)
T 3nyc_A          164 IRRNQGQVLCNHEALEIRR--V--DGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLA-GVRPLGLQPKRRSAFIFAPPP  237 (381)
T ss_dssp             HHHTTCEEESSCCCCEEEE--E--TTEEEEECSSE-EEEESEEEECCGGGHHHHHHHH-TCCCCCCEEEEEEEEEECCCT
T ss_pred             HHHCCCEEEcCCEEEEEEE--e--CCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHh-CCCCCceeeeEEEEEEECCCc
Confidence            9999999999999999988  6  45688999888 5999999999999999998887 776 79999999998876543


Q ss_pred             CCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCee
Q 015088          242 GNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVA  321 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~  321 (413)
                      ...    . ..+|.+...+ ..+|++|..   +.+.++.......++.....+ ....+.+.+.+.. +|.+.+. ++..
T Consensus       238 ~~~----~-~~~p~~~~~~-~~~y~~p~~---g~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~-~~~~  305 (381)
T 3nyc_A          238 GID----C-HDWPMLVSLD-ESFYLKPDA---GMLLGSPANADPVEAHDVQPE-QLDIATGMYLIEE-ATTLTIR-RPEH  305 (381)
T ss_dssp             TCC----C-TTCCEEEETT-SSCEEEEET---TEEEEECCCCEECCSSCCCCC-HHHHHHHHHHHHH-HBSCCCC-CCSE
T ss_pred             CCC----c-CccceEEeCC-CCEEEEeCC---CcEEEeCCcCCCCCcccCCCC-hHHHHHHHHHHHh-cCCCccc-ceee
Confidence            211    1 2356665443 347898875   334444432221111111111 1145677777766 5666653 6788


Q ss_pred             eceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCc------cccccccccccc
Q 015088          322 TQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQG------VELQHFRISRFK  392 (413)
Q Consensus       322 ~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~------~~~~~~~~~R~~  392 (413)
                      .|+|+||+|+|+.|+||++|..  +|+|+++||+|+|+++||++|+++|++|.++.++.      .+++.|+|+||.
T Consensus       306 ~w~G~r~~t~D~~p~ig~~~~~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~g~~~~~~~~~~~~d~~~~~~~Rf~  380 (381)
T 3nyc_A          306 TWAGLRSFVADGDLVAGYAANA--EGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLS  380 (381)
T ss_dssp             EEEEEEEECTTSCCEEEECTTS--TTEEEEECCTTCTTTTHHHHHHHHHHHHTTCCCCHHHHTTTCCHHHHCGGGGC
T ss_pred             eeEEccccCCCCCceecCCCCC--CCeEEEEcCCChhHhhCHHHHHHHHHHHhCCCCCcccccccCcccccCccccC
Confidence            9999999999999999999987  99999999999999999999999999998555531      579999999995

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=100.00  E-value=1.4e-45  Score=347.15  Aligned_cols=372  Identities=33%  Similarity=0.567  Sum_probs=289.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCCe
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ++||+|||||++|+++|++|+++|++|+|||+...++..++|....+.++..+.. ..+..+...+.+.|+++.+..+.+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   82 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHK   82 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhCCc
Confidence            5899999999999999999999999999999988765345666666666655433 356788889999999998887766


Q ss_pred             eEEeeceeeeCCC-ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+...+.+.+... ....+....+.....+++.+.++.+++.+.+|. +..+....+++.+.+++++|..+++.|.+.++
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (389)
T 2gf3_A           83 IFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELAE  161 (389)
T ss_dssp             CEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTT-CCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred             ceeecceEEEcCCCchHHHHHHHHHHHHcCCCcEEcCHHHHHHhCCC-cccCCCceEEEeCCCcEEeHHHHHHHHHHHHH
Confidence            6666666665443 334456666677788888889999999988887 55556677889999999999999999999999


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCC
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNE  244 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~  244 (413)
                      +.|++++++++|+++..  +  ++.+.|++.+| +++||.||+|+|.|+..+++.+ +..+|+.+.++++++++.+..  
T Consensus       162 ~~Gv~i~~~~~v~~i~~--~--~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~-g~~~pl~~~rg~~~~~~~~~~--  233 (389)
T 2gf3_A          162 ARGAKVLTHTRVEDFDI--S--PDSVKIETANG-SYTADKLIVSMGAWNSKLLSKL-NLDIPLQPYRQVVGFFESDES--  233 (389)
T ss_dssp             HTTCEEECSCCEEEEEE--C--SSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGG-TEECCCEEEEEEEEEECCCHH--
T ss_pred             HCCCEEEcCcEEEEEEe--c--CCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhh-ccCCceEEEEEEEEEEecCcc--
Confidence            99999999999999988  6  34577888777 4999999999999999888876 777899999999998864320  


Q ss_pred             CccccCCCCCeEEEc-CCCceEecCCCCCCCcEEEec-CCCCCCCCCCCCCC---CchhHHHHHHHHHhhcCCCCCCCCC
Q 015088          245 ADYAVGGDFPSFASY-GDPYIYGTPSLEYPGLIKIAL-HGGYPCDPDRRPWG---PGLLLDSLKEWIQGRFAGRVDSNGP  319 (413)
Q Consensus       245 ~~~~~~~~~~~~~~~-~~~~~y~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~p~~~~~~~~  319 (413)
                       .+.....+|.+... .+..+|++|..+..+ +.+|. ..+...+|+..+..   ..+..+.+.+.+.+++|.+.+  .+
T Consensus       234 -~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~-~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~--~~  309 (389)
T 2gf3_A          234 -KYSNDIDFPGFMVEVPNGIYYGFPSFGGCG-LKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANG--EL  309 (389)
T ss_dssp             -HHBGGGTCCEEEEEETTEEEEEECBSTTCC-EEEEESSCCEECCTTTCCCCTTSSHHHHHHHHHHHHHHCGGGCS--CE
T ss_pred             -cccccccCCEEEEeCCCCcEEEcCCCCCCc-EEEEEcCCCCccCcccccCccCCCHHHHHHHHHHHHHhCCCCCC--Cc
Confidence             11000125655433 222579988765323 44443 22222233222211   123678999999999999874  57


Q ss_pred             eeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccC
Q 015088          320 VATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN  394 (413)
Q Consensus       320 ~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~  394 (413)
                      ...|+|+|+.|+|+.|+||++|..  +|+|+++|++|+|++++|++|+++|++|.++.+ +.+++.|+|+||...
T Consensus       310 ~~~w~g~r~~t~D~~p~ig~~~~~--~~l~~a~G~~g~G~~~ap~~g~~la~~i~~~~~-~~~~~~~~~~Rf~~~  381 (389)
T 2gf3_A          310 KRGAVCMYTKTLDEHFIIDLHPEH--SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKT-EHDISIFSINRPALK  381 (389)
T ss_dssp             EEEEEEEEEECTTSCCEEEEETTE--EEEEEEECCTTCCGGGHHHHHHHHHHHHHHSCC-SSCCGGGCTTCGGGT
T ss_pred             eEEEEEEeccCCCCCeEEccCCCC--CCEEEEECCccccccccHHHHHHHHHHHcCCCC-CCCcccccccccccc
Confidence            789999999999999999999877  899999999999999999999999999995554 678899999999765

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=100.00  E-value=3.3e-45  Score=343.77  Aligned_cols=373  Identities=23%  Similarity=0.294  Sum_probs=286.6

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      |+.++||+|||||++|+++|++|+++|++|+|||+....  .++|..+.+.++..+.......+...+.+.|+++.+..+
T Consensus         2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~--~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~   79 (382)
T 1y56_B            2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIG--SGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYG   79 (382)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--CSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC--CCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            445799999999999999999999999999999998544  356666667777666666566778888999999988877


Q ss_pred             CeeEEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      . .+...+.+......  .+.+....+.+...+.+.+.++.+++.+.+|. +..+....+++.+.++.++|..+++.|.+
T Consensus        80 ~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  157 (382)
T 1y56_B           80 F-SFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPL-LDISEVIAASWNPTDGKADPFEATTAFAV  157 (382)
T ss_dssp             C-CEECCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTT-CCCTTCCEEEEETTCCEECHHHHHHHHHH
T ss_pred             C-CeeccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCC-CCcccceEEEEcCCCeeECHHHHHHHHHH
Confidence            6 44555665554332  23345556667778988899999999888886 44345567888899999999999999999


Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc--cceeEEEEEEEEEE
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE--LPIQAVETTVCYWR  238 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~~~~~~g~~~~~~  238 (413)
                      .+++.|++++++++|+++..  +  ++.+. |++.+| +++||.||+|+|.|+..+.+.+ +..  +|+.+.+++++.++
T Consensus       158 ~~~~~Gv~i~~~~~v~~i~~--~--~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~-g~~~~~~~~~~~g~~~~~~  231 (382)
T 1y56_B          158 KAKEYGAKLLEYTEVKGFLI--E--NNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMA-GIKTKIPIEPYKHQAVITQ  231 (382)
T ss_dssp             HHHHTTCEEECSCCEEEEEE--S--SSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHH-TCCSCCCCEEEEEEEEEEC
T ss_pred             HHHHCCCEEECCceEEEEEE--E--CCEEEEEEECCc-EEECCEEEECcchhHHHHHHHc-CCCcCcCCCeeEeEEEEEc
Confidence            99999999999999999988  6  34555 888888 5999999999999998888776 877  89999999988776


Q ss_pred             ecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCC
Q 015088          239 IKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNG  318 (413)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~  318 (413)
                      ....    ..   ..+.+.......+|++|..+  |++.++.......+.+ .. ...+..+.+.+.+.+++|.+.+. +
T Consensus       232 ~~~~----~~---~~~~~~~~~~~~~y~~p~~~--g~~iG~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~p~l~~~-~  299 (382)
T 1y56_B          232 PIKR----GT---INPMVISFKYGHAYLTQTFH--GGIIGGIGYEIGPTYD-LT-PTYEFLREVSYYFTKIIPALKNL-L  299 (382)
T ss_dssp             CCST----TS---SCSEEEESTTTTEEEECCSS--SCCEEECSCCBSSCCC-CC-CCHHHHHHHHHHHHHHCGGGGGS-E
T ss_pred             cCCc----cc---CCCeEEecCCCeEEEEEeCC--eEEEecCCCCCCCCCC-CC-CCHHHHHHHHHHHHHhCCCcCCC-C
Confidence            3221    10   12445443324589999865  4444422111111111 11 11236788999999999988764 6


Q ss_pred             CeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccCCCCC
Q 015088          319 PVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKENPKGN  398 (413)
Q Consensus       319 ~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~~~~~  398 (413)
                      +...|+|+||.|+|+.|+||++|..  +|+|+++|++|+|+++||++|+++|++|.++.+ ..+++.|+|+||...++..
T Consensus       300 ~~~~~~g~r~~t~d~~p~ig~~~~~--~~~~~~~G~~g~G~~~a~~~g~~la~~i~~~~~-~~~~~~~~~~Rf~~~~~~~  376 (382)
T 1y56_B          300 ILRTWAGYYAKTPDSNPAIGRIEEL--NDYYIAAGFSGHGFMMAPAVGEMVAELITKGKT-KLPVEWYDPYRFERGELRT  376 (382)
T ss_dssp             EEEEEEEEEEECTTSCCEEEEESSS--BTEEEEECCTTCHHHHHHHHHHHHHHHHHHSSC-SSCGGGGCGGGTTTTCCC-
T ss_pred             ceEEEEeccccCCCCCcEeccCCCC--CCEEEEEecCcchHhhhHHHHHHHHHHHhCCCC-cCcccccCHhhhccCCCCC
Confidence            7789999999999999999999977  899999999999999999999999999995554 5689999999999988776


Q ss_pred             Ccc
Q 015088          399 VKD  401 (413)
Q Consensus       399 ~~~  401 (413)
                      |+.
T Consensus       377 ~~~  379 (382)
T 1y56_B          377 AAL  379 (382)
T ss_dssp             ---
T ss_pred             ccc
Confidence            654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=100.00  E-value=4.5e-44  Score=337.69  Aligned_cols=368  Identities=24%  Similarity=0.412  Sum_probs=283.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|++|+++|++|+|||+....+..+++....+.+...+....+..+...+...|.++.+..+..
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCERR   82 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhCcc
Confidence            36899999999999999999999999999999988764345666666666555555556677788889999998887766


Q ss_pred             eEEeeceeeeCCCCh----hhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSEN----KSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      ++...+.+.......    ..+....+.+...+.+.+.++.+++.+.+|. +..+....+++.+.++.++|..++..|.+
T Consensus        83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  161 (397)
T 2oln_A           83 LIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGF-RGLPRDYEGFLQPDGGTIDVRGTLAALFT  161 (397)
T ss_dssp             CEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTCCCEEEEHHHHHHHHCC-CSCCTTCEEEEETTCEEEEHHHHHHHHHH
T ss_pred             HHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCCCceecCHHHHHhhCcC-ccCCCceeEEEcCCCCEEcHHHHHHHHHH
Confidence            666666666554332    4456667777778888888898888888887 55455677889999999999999999999


Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecC
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKE  241 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~  241 (413)
                      .+++.|++++++++|++|..  +  ++.+.|.+.+++ ++||.||+|+|+|+..+++.+ +..+|+.+.++++++++.+.
T Consensus       162 ~a~~~Gv~i~~~~~V~~i~~--~--~~~v~v~t~~g~-i~a~~VV~A~G~~s~~l~~~~-g~~~p~~~~~~~~~~~~~~~  235 (397)
T 2oln_A          162 LAQAAGATLRAGETVTELVP--D--ADGVSVTTDRGT-YRAGKVVLACGPYTNDLLEPL-GARLAYSVYEMAIAAYRQAT  235 (397)
T ss_dssp             HHHHTTCEEEESCCEEEEEE--E--TTEEEEEESSCE-EEEEEEEECCGGGHHHHHGGG-TCCCCEEEEEEEEEEEEBCS
T ss_pred             HHHHcCCEEECCCEEEEEEE--c--CCeEEEEECCCE-EEcCEEEEcCCcChHHHhhhc-CCCCCeeEEEEEEEEEeecC
Confidence            99999999999999999988  6  456778887774 999999999999998888877 88899999999999887443


Q ss_pred             CCCCccccCCCCCeEEEcC-CC-----ceEecCCCCCCC--cEEEecCC--CCCCCCCCCCCC-CchhHHHHHHHHHhhc
Q 015088          242 GNEADYAVGGDFPSFASYG-DP-----YIYGTPSLEYPG--LIKIALHG--GYPCDPDRRPWG-PGLLLDSLKEWIQGRF  310 (413)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-~~-----~~y~~p~~~~~~--~~~~~~~~--~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  310 (413)
                      .   .+    .+|.+.... ..     .+|++|..+..+  .+++|.+.  +...+++..+.. ..+..+.+.+.+.++|
T Consensus       236 ~---~~----~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  308 (397)
T 2oln_A          236 P---VT----EAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDRLSGWLRDHL  308 (397)
T ss_dssp             C---CS----CCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCSSCCHHHHHHHHHHHHHHC
T ss_pred             c---cc----CCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccCCCCHHHHHHHHHHHHHhC
Confidence            1   11    256554322 11     589999765321  45555322  222223222221 1236788999999999


Q ss_pred             CCCCCCCCCeeeceeeee--ecCCCCeEecCCCC----CCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccc
Q 015088          311 AGRVDSNGPVATQLCMYS--ITPDEDFVIDFLGG----EFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQ  384 (413)
Q Consensus       311 p~~~~~~~~~~~~~g~~~--~t~d~~p~ig~~~~----~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~  384 (413)
                      |.+.+  .+...|+|+++  +|+|+.|+||++|.    .  +|+|+++|  |+|++++|++|+++|++|.++.+ ..+++
T Consensus       309 p~l~~--~~~~~~~g~~~~p~t~D~~p~ig~~~~~~~~~--~~l~~a~G--g~G~~~ap~~g~~la~~i~~~~~-~~~~~  381 (397)
T 2oln_A          309 PTVDP--DPVRTSTCLAVLPTDPERQFFLGTARDLMTHG--EKLVVYGA--GWAFKFVPLFGRICADLAVEDST-AYDIS  381 (397)
T ss_dssp             TTBCS--SCSEEEEEEEEEESSTTCCCEEEESTTTSTTG--GGEEEEEE--SSCGGGHHHHHHHHHHHHHHSCC-SSCCG
T ss_pred             CCCCC--CceeEEEEEecCCcCCCCCeEeecCCccccCC--CCEEEEeC--cchhhccHHHHHHHHHHHhCCCC-CCCcc
Confidence            99874  46778999988  99999999999986    6  89999999  69999999999999999995554 67899


Q ss_pred             cccccccccC
Q 015088          385 HFRISRFKEN  394 (413)
Q Consensus       385 ~~~~~R~~~~  394 (413)
                      .|+++||...
T Consensus       382 ~f~~~Rf~~~  391 (397)
T 2oln_A          382 RLAPQSALLE  391 (397)
T ss_dssp             GGSCCC----
T ss_pred             ccccChhhhh
Confidence            9999999653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=100.00  E-value=1.4e-44  Score=338.39  Aligned_cols=362  Identities=30%  Similarity=0.583  Sum_probs=280.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHHHHhCC-
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQSEIGY-   84 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-   84 (413)
                      ++||+|||||++|+++|++|+++|++|+|||+....++.+++++..+.++..+.. ..+..+...+.+.|+++. +.+. 
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~   80 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELS-RHNED   80 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHH-TTCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHH-HhCCC
Confidence            4899999999999999999999999999999998776555665555566543332 456778888999999988 6665 


Q ss_pred             -eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           85 -KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                       ..+...+.+.+.....+.+....+.++..+.+.+.++.+++.+.+|. +..+....+++.+.+++++|..+++.|.+.+
T Consensus        81 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  159 (372)
T 2uzz_A           81 DPIFVRSGVINLGPADSTFLANVAHSAEQWQLNVEKLDAQGIMARWPE-IRVPDNYIGLFETDSGFLRSELAIKTWIQLA  159 (372)
T ss_dssp             SCSEECCCEEEEEETTCHHHHHHHHHHHHTTCCEEEEEHHHHHHHCTT-CCCCTTEEEEEESSCEEEEHHHHHHHHHHHH
T ss_pred             ccceeeeceEEEeCCCcHHHHHHHHHHHHcCCCcEecCHHHHHhhCCC-ccCCCCceEEEeCCCcEEcHHHHHHHHHHHH
Confidence             44566676666554445566667777888999999999999999887 5556667789999999999999999999999


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCC
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGN  243 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~  243 (413)
                      ++.|++++++++|++|..  +  ++.+.|++.+|+ ++||.||+|+|.|+..+++     .+|+.|.++++++++.+.. 
T Consensus       160 ~~~G~~i~~~~~V~~i~~--~--~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~-----~l~~~p~rg~~~~~~~~~~-  228 (372)
T 2uzz_A          160 KEAGCAQLFNCPVTAIRH--D--DDGVTIETADGE-YQAKKAIVCAGTWVKDLLP-----ELPVQPVRKVFAWYQADGR-  228 (372)
T ss_dssp             HHTTCEEECSCCEEEEEE--C--SSSEEEEESSCE-EEEEEEEECCGGGGGGTST-----TCCCEEEECCEEEECCCGG-
T ss_pred             HHCCCEEEcCCEEEEEEE--c--CCEEEEEECCCe-EEcCEEEEcCCccHHhhcc-----ccCceEEEEEEEEEEeccc-
Confidence            999999999999999988  6  345788888886 9999999999999987765     3489999999988774321 


Q ss_pred             CCccccCCCCCeEEEc--CCCceEecCCCCCCCcEEEecCC-CCCCCC--CCCCCCC-chhHHHHHHHHHhhcCCCCCCC
Q 015088          244 EADYAVGGDFPSFASY--GDPYIYGTPSLEYPGLIKIALHG-GYPCDP--DRRPWGP-GLLLDSLKEWIQGRFAGRVDSN  317 (413)
Q Consensus       244 ~~~~~~~~~~~~~~~~--~~~~~y~~p~~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~~~l~~~~~~~~p~~~~~~  317 (413)
                         +.....+|.+...  +....|++|..+  +.+.+|.+. +...++  +..+... .+..+.+.+.+.+++|.+.   
T Consensus       229 ---~~~~~~~p~~~~~~~~~~~~y~~p~~~--~~~~iG~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~---  300 (372)
T 2uzz_A          229 ---YSVKNKFPAFTGELPNGDQYYGFPAEN--DALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLPGIG---  300 (372)
T ss_dssp             ---GSTTTTCCEEEEECTTCCEEEEECCSS--SCEEEEESSCCEECCSGGGCCCTTTSTTGGGSSHHHHHHHSCSCC---
T ss_pred             ---cCccccCCEEEEecCCCCeEEecCCCC--CeEEEEecCCCCccCChhhccCCCCCHHHHHHHHHHHHHHCCCCC---
Confidence               1111125655432  223578888754  334444422 111111  1111111 1256778999999999887   


Q ss_pred             CCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccc
Q 015088          318 GPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFK  392 (413)
Q Consensus       318 ~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~  392 (413)
                      .+...|+|+|+.|+|+.|+||++|+.  +|+|+++||+|+|++++|++|+++|++|.++ .++.+++.|+|+||.
T Consensus       301 ~~~~~~~g~r~~t~d~~p~ig~~~~~--~~l~~~~G~~g~G~~~ap~~g~~la~~i~~~-~~~~~~~~~~~~Rf~  372 (372)
T 2uzz_A          301 CCLYGAACTYDNSPDEDFIIDTLPGH--DNTLLITGLSGHGFKFASVLGEIAADFAQDK-KSDFDLTPFRLSRFQ  372 (372)
T ss_dssp             CEEEECCCEEEECTTSCCCEEEETTE--EEEEEECCCCSCCGGGHHHHHHHHHHHHTTC-CCSSCCGGGCSTTCC
T ss_pred             ccceeeEEeeccCCCCCeEEecCCCC--CCEEEEeCCCccchhccHHHHHHHHHHHhCC-CCCCCccccCcCCCC
Confidence            35778999999999999999999877  8999999999999999999999999999854 446789999999994

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=100.00  E-value=7.5e-42  Score=323.51  Aligned_cols=372  Identities=21%  Similarity=0.200  Sum_probs=287.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHH-cC-CcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAK-RG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~-~g-~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      +.++||+|||||++|+++|++|++ +| ++|+|||++...  .++|..+.+.+...+.......+...+.+.|.++.+..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~--~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   96 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLA--GGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDL   96 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTT--CSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCC--CCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999 99 999999999854  35666677777776666666777888889999998887


Q ss_pred             CCee-EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccC-----CCCeEEEEecCCceeChHH
Q 015088           83 GYKV-YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEI-----PENWVGVATELGGVIKPTK  154 (413)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  154 (413)
                      +.++ +...+.+......  .+.+....+.+...+.+.+.++.+++.+.+|. +..     .....+++.+.+++++|..
T Consensus        97 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (405)
T 2gag_B           97 EYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPI-INTSDDIRYPVMGATWQPRAGIAKHDH  175 (405)
T ss_dssp             TCCCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTCCCEEECHHHHHHHCTT-SCCSTTSSSCCCEEEEETTCBBCCHHH
T ss_pred             CCCcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCCCceEeCHHHHHhhCCC-CcccccccccceeEEEeCCCccCCHHH
Confidence            7665 3344555544332  23345566667788888899999999988886 443     2456788899999999999


Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV  234 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~  234 (413)
                      +++.|.+.+++.|++++++++|+++..  ++ +..+.|++.+|+ ++||.||+|+|.|+..+.+.+ +..+|+.+.++++
T Consensus       176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~--~~-~~~~~v~~~~g~-~~a~~vV~a~G~~s~~l~~~~-g~~~~~~~~~~~~  250 (405)
T 2gag_B          176 VAWAFARKANEMGVDIIQNCEVTGFIK--DG-EKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMA-GFELPIQSHPLQA  250 (405)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE--SS-SBEEEEEETTCC-EEEEEEEECCGGGHHHHHHHH-TCCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEE--eC-CEEEEEEeCCce-EECCEEEECCchhHHHHHHHc-CCCCCccccceeE
Confidence            999999999999999999999999988  62 346778888884 999999999999998887776 8889999999998


Q ss_pred             EEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCC
Q 015088          235 CYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRV  314 (413)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  314 (413)
                      +.++.....   +     .+.+.. .+..+|++|..+  +.+.++.......+.+ .. ...+..+.+.+.+.+++|.+.
T Consensus       251 ~~~~~~~~~---~-----~~~~~~-~~~~~y~~p~~~--g~~~ig~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~p~l~  317 (405)
T 2gag_B          251 LVSELFEPV---H-----PTVVMS-NHIHVYVSQAHK--GELVMGAGIDSYNGYG-QR-GAFHVIQEQMAAAVELFPIFA  317 (405)
T ss_dssp             EEEEEBCSC---C-----CSEEEE-TTTTEEEEECTT--SEEEEEEEECSSCCCS-SC-CCTHHHHHHHHHHHHHCGGGG
T ss_pred             EEecCCccc---c-----CceEEe-CCCcEEEEEcCC--CcEEEEeccCCCCccc-cC-CCHHHHHHHHHHHHHhCCccc
Confidence            877522110   1     123322 334588888654  4444443211110111 11 112267889999999999887


Q ss_pred             CCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccC
Q 015088          315 DSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN  394 (413)
Q Consensus       315 ~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~  394 (413)
                      +. ++...|+|+|++|+|+.|+||++| .  +|+|+++|++|+|+++||.+|+++|++|.++.+ ..+++.|+|+||...
T Consensus       318 ~~-~~~~~w~g~~~~t~d~~p~ig~~~-~--~~l~~~~G~~g~G~~~a~~~g~~la~~i~g~~~-~~~~~~~~~~R~~~~  392 (405)
T 2gag_B          318 RA-HVLRTWGGIVDTTMDASPIISKTP-I--QNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEP-HELNKPFSLERFETG  392 (405)
T ss_dssp             GC-EECEEEEEEEEEETTSCCEEEECS-S--BTEEEEECCGGGCSTTHHHHHHHHHHHHHHTSC-CTTTTTSCSTHHHHT
T ss_pred             cC-CcceEEeeccccCCCCCCEecccC-C--CCEEEEecCCCchhhHHHHHHHHHHHHHhCCCC-CccccccCcchhcCC
Confidence            54 567799999999999999999987 4  899999999999999999999999999995554 568999999999998


Q ss_pred             CCCCCccc
Q 015088          395 PKGNVKDY  402 (413)
Q Consensus       395 ~~~~~~~~  402 (413)
                      ++.++...
T Consensus       393 ~~~~~~~~  400 (405)
T 2gag_B          393 HLIDEHGA  400 (405)
T ss_dssp             CCCCCTTT
T ss_pred             ccccCccc
Confidence            88877765

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=100.00  E-value=1.5e-41  Score=325.43  Aligned_cols=371  Identities=19%  Similarity=0.206  Sum_probs=270.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|++|+++| ++|+|||+....+ .++|..+.+.+...+.......+...+...|+++... +.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~-~g~S~~~~g~i~~~~~~~~~~~l~~~~~~~~~~l~~~-g~   99 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG-SGDSGRSMAAFRTFFSSTMNRLVAGSTVRLFEDAQRG-GE   99 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT-CSGGGSSCCEEECCCSSHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC-CCcccCCCcEecccCCCHHHHHHHHHHHHHHHHHHhc-Cc
Confidence            3689999999999999999999999 9999999943332 4566777788877776666677888888999998877 65


Q ss_pred             ee-EEeeceeeeCCCC-hhhHHHHHHHHhhCCCCc-----ccc-----------CHHHHHHHcCCcccCCCCeEEEEecC
Q 015088           85 KV-YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPH-----QVL-----------DCRQVLEKYSGRIEIPENWVGVATEL  146 (413)
Q Consensus        85 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (413)
                      ++ +...+.+...... ...+....+.+...+.+.     +.+           +.+++.+ ..    .+....+++.+.
T Consensus       100 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~l~~~g~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~  174 (448)
T 3axb_A          100 DLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEV-LG----VGDVEGAVLIRS  174 (448)
T ss_dssp             CCCCBCCCEEEEECHHHHHHHHHHHTTSCCBTTTEEEECHHHHHHHHCCCCCCTTSSHHHH-HT----CCCCCEEEEESS
T ss_pred             ccccccCCEEEEcCHHHHHHHHHHHHHHHhhCCCccccchhhhhhcccccccCCCHHHHHh-cc----CCCceEEEEeCC
Confidence            44 3344444421111 112223333334456555     555           6666655 22    234556788888


Q ss_pred             CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecc--------------cCCCeEEEEcCCCcEE--EcCEEEEcCC
Q 015088          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKD--------------AVKGGVTVVTSNGEKF--WGKKCVVTAG  210 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--------------~~~~~~~v~~~~g~~i--~ad~VV~A~G  210 (413)
                      +++++|..++..|.+.+++.|++++++++|++|..  +              +++..+.|.+.+|+ +  +||.||+|+|
T Consensus       175 ~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~~~~~~~~~~~~~~v~~V~t~~g~-i~~~Ad~VV~AtG  251 (448)
T 3axb_A          175 AGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVEL--KPRVELGIEGEPLPWQEARASAAVLSDGT-RVEVGEKLVVAAG  251 (448)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEE--EESSCCCCTTSSCTTSCEEEEEEEETTSC-EEEEEEEEEECCG
T ss_pred             CeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEe--cccccccccccccccCCCceEEEEeCCCE-EeecCCEEEECCC
Confidence            89999999999999999999999999999999975  3              22344578888885 8  9999999999


Q ss_pred             CChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCc------cccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC
Q 015088          211 AWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEAD------YAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY  284 (413)
Q Consensus       211 ~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~  284 (413)
                      .|+..+++.+ +..+|+.+.+++++.++.+......      +.....+|.+...  ..+|++|..+. |.+++|.....
T Consensus       252 ~~s~~l~~~~-g~~~~~~p~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~y~~p~~~~-g~~~iG~~~~~  327 (448)
T 3axb_A          252 VWSNRLLNPL-GIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILP--KRVLVRPAPRE-GSFWVQLSDNL  327 (448)
T ss_dssp             GGHHHHHGGG-TCCCSEEEEEEEEEEEECCSHHHHHHHHHCCTTSSSSCCEEEET--TTEEEEEETTT-TEEEEEECCCT
T ss_pred             cCHHHHHHHc-CCCCcccccceEEEEeCCcccccccccccccccccCCCceEEcC--CceEEeecCCC-CeEEEecCCcc
Confidence            9999898887 8889999999999988743210000      1111224665543  45899987642 43444443221


Q ss_pred             CCCCCCCCC--C-Cchh-HHHHHHHHHhhcCCCCCCCCCeeeceeeeee-cCCCCeEecCCCCCCCCCEEEEeCCCCCCC
Q 015088          285 PCDPDRRPW--G-PGLL-LDSLKEWIQGRFAGRVDSNGPVATQLCMYSI-TPDEDFVIDFLGGEFGEDVVVAGGFSGHGF  359 (413)
Q Consensus       285 ~~~~~~~~~--~-~~~~-~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~  359 (413)
                      . +++..+.  . ..+. .+.+.+.+.+++|.+.+. .+...|+|+|++ |+|+.|+||++|    +|+|+++|++|+|+
T Consensus       328 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~w~G~r~~~t~d~~p~ig~~~----~~l~~a~G~~g~G~  401 (448)
T 3axb_A          328 G-RPFALEEDPQPEEHYYSLAILPILSLYLPQFQDA-YPSGGWAGHYDISFDANPVVFEPWE----SGIVVAAGTSGSGI  401 (448)
T ss_dssp             T-SCBCCCSSCCCCHHHHHHHTHHHHHHHCGGGTTC-CCSEEEEEEEEEETTSSCEEECGGG----CSEEEEECCTTCCG
T ss_pred             c-CCcccccccCCChHHHHHHHHHHHHHhCcCcccC-CcccceEEEeccccCCCCcEeeecC----CCEEEEECCCchhH
Confidence            1 1111111  1 1225 788999999999998864 677899999999 999999999987    78999999999999


Q ss_pred             ccchHHHHHHHHHHhcCCCC------cccccccc-ccc-cccCCC
Q 015088          360 KMAPAVGRILADLVLSGEAQ------GVELQHFR-ISR-FKENPK  396 (413)
Q Consensus       360 ~~a~~~a~~la~~i~~g~~~------~~~~~~~~-~~R-~~~~~~  396 (413)
                      +++|++|+++|++|.++..+      ..+++.|+ |+| |...++
T Consensus       402 ~~ap~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~~  446 (448)
T 3axb_A          402 MKSDSIGRVAAAVALGMESVELYGGVEMPVKWMGLEGRRYEQERL  446 (448)
T ss_dssp             GGHHHHHHHHHHHHTTCSEEECTTSCEEEGGGGSSTTCCCCCCSC
T ss_pred             hHhHHHHHHHHHHHcCCCcccccccceecHhHcCccccccccCCc
Confidence            99999999999999955542      16799999 999 987654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=100.00  E-value=1.2e-40  Score=318.23  Aligned_cols=369  Identities=19%  Similarity=0.244  Sum_probs=265.0

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcccCCCceeecccCCCChH------HHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH------PMVLESCL   73 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~------~l~~~~~~   73 (413)
                      |. ++.++||+|||||++|+++|++|+++|+ +|+|||+....++.+++......+...+....+.      .+...+..
T Consensus         1 M~-~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   79 (438)
T 3dje_A            1 MA-VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFN   79 (438)
T ss_dssp             -C-CCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHH
Confidence            44 4457999999999999999999999999 9999999988766555545555566556666666      77778888


Q ss_pred             HHHHHHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHh-hCCCCc-cccCHHHHHHHcCC-cccCCCCeE--EEEecCC-
Q 015088           74 LWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCR-KNSVPH-QVLDCRQVLEKYSG-RIEIPENWV--GVATELG-  147 (413)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-  147 (413)
                      .|.++.  .....+...+.+..... ...+..+..... ..+... +.++.+++.+.+|. ... .....  +++.+.+ 
T Consensus        80 ~~~~~~--~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~l~~-~~~~g~~g~~~~~~~  155 (438)
T 3dje_A           80 GWKNDP--LFKPYYHDTGLLMSACS-QEGLDRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQ-GDFPGWKGYFARSGA  155 (438)
T ss_dssp             HHHHCT--TTGGGEECCCEEEEECS-HHHHHHHHHHHCGGGCTTCEEECSHHHHHTTSCTTTSC-SCCTTCEEEEESSSC
T ss_pred             HHhhCc--cccCcEeccceEEEecC-cchHHHHHHHHhhcccCCceecCCHHHHHHhCCccccc-CCCCCceEEEeCCCC
Confidence            777652  11122445555554432 222222222221 345555 67788888887773 111 22233  8888999 


Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCc---eEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNM---EVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~---~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      +.+++..++..|.+.+++.|++|++++   +|++|..  +  ++.+. |++.+|++++||.||+|+|+|+..+++ +   
T Consensus       156 g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~--~--~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~-l---  227 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF--E--NNDVKGAVTADGKIWRAERTFLCAGASAGQFLD-F---  227 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE--E--TTEEEEEEETTTEEEECSEEEECCGGGGGGTSC-C---
T ss_pred             EEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe--c--CCeEEEEEECCCCEEECCEEEECCCCChhhhcC-c---
Confidence            999999999999999999999999999   9999988  6  34555 999999779999999999999988876 3   


Q ss_pred             ccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecC-CCCCC-----------CCCCC
Q 015088          224 ELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALH-GGYPC-----------DPDRR  291 (413)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~-~~~~~-----------~~~~~  291 (413)
                      ..++.+.+.++.++.+++.....+   ..+|++.... ..+|+.|..+ ++.++++.+ .+...           .|...
T Consensus       228 ~~~~~p~~~~~~~~~l~~~~~~~~---~~~p~~~~~~-~~~~~~p~~~-~~~l~i~~~~~g~~~~~~~~~~~~~~~p~~~  302 (438)
T 3dje_A          228 KNQLRPTAWTLVHIALKPEERALY---KNIPVIFNIE-RGFFFEPDEE-RGEIKICDEHPGYTNMVQSADGTMMSIPFEK  302 (438)
T ss_dssp             TTCCEEEEEEEEEEECCGGGHHHH---TTCCEEEETT-TEEECSCCTT-TCEEEEEECCSCEECEEECTTCCEEECCCCC
T ss_pred             ccceeeEEEEEEEEEcChHHhhhh---cCCCEEEECC-CceecCCCCC-CCeEEEEeCCCCccCCccCCCcccccCCccc
Confidence            335677777776666544221112   2367665443 4578777644 355555432 12211           01111


Q ss_pred             CCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHH
Q 015088          292 PWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILAD  371 (413)
Q Consensus       292 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~  371 (413)
                      ...+.+..+.+.+.+.++||.+.+. ++...|+|+|++|||+.|+||++|..  +|+|+++|++|+|++++|++|+++|+
T Consensus       303 ~~~~~~~~~~l~~~~~~~~P~l~~~-~~~~~~~g~~~~t~D~~piig~~p~~--~~l~~a~G~~g~G~~~ap~~g~~la~  379 (438)
T 3dje_A          303 TQIPKEAETRVRALLKETMPQLADR-PFSFARICWCADTANREFLIDRHPQY--HSLVLGCGASGRGFKYLPSIGNLIVD  379 (438)
T ss_dssp             SSCBHHHHHHHHHHHHHHCGGGTTC-CCSEEEEEEEEECTTSCCEEEECSSC--TTEEEEECCTTCCGGGTTTHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCcccccC-CcceeeEEEeCcCCCCCeEEeecCCC--CCEEEEECCCCcchhhhHHHHHHHHH
Confidence            1223336788999999999999875 67889999999999999999999987  99999999999999999999999999


Q ss_pred             HHhcCCCCcccccccccccc
Q 015088          372 LVLSGEAQGVELQHFRISRF  391 (413)
Q Consensus       372 ~i~~g~~~~~~~~~~~~~R~  391 (413)
                      +|. |+.++...+.|+++|.
T Consensus       380 ~i~-g~~~~~~~~~~~~~~~  398 (438)
T 3dje_A          380 AME-GKVPQKIHELIKWNPD  398 (438)
T ss_dssp             HHH-TCCCHHHHHHHSCCHH
T ss_pred             HHh-CCCChhhccccCCCCc
Confidence            998 5554567788888775

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=100.00  E-value=1.4e-40  Score=333.18  Aligned_cols=365  Identities=15%  Similarity=0.128  Sum_probs=265.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCC--hHHHHHHHHHHHHHHHHHhCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY--YHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .+||+|||||++|+++|++|+++|++|+|||++...+ .++|....+.+........  ...+...+.....++.+..+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g-~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  350 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPA-LGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLPV  350 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS-CSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCccc-ccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCCC
Confidence            4899999999999999999999999999999976654 3455555666665443322  333333334444445555555


Q ss_pred             ee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCcc---ccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           85 KV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ---VLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .+ +...+.+.... ...... ....+...+++.+   .++.+++.+..+.    +....+++.+.++.++|..++..|.
T Consensus       351 ~~~~~~~g~l~~~~-~~~~~~-~~~~~~~~g~~~~~~~~l~~~~~~~~~~l----~~~~gg~~~p~~g~v~p~~l~~aL~  424 (676)
T 3ps9_A          351 KFDHDWCGVTQLGW-DEKSQH-KIAQMLSMDLPAELAVAVEANAVEQITGV----ATNCSGITYPQGGWLCPAELTRNVL  424 (676)
T ss_dssp             CCCEECCCEEEECC-SHHHHH-HHHHHHTSCCCTTTCEEECHHHHHHHHSS----CCSSCEEEETTCEEECHHHHHHHHH
T ss_pred             CcCcCcCCeeeecC-CHHHHH-HHHHHHhcCCcHHHhhhCCHHHHHHhhCC----CccCCcEEecCCeeeCHHHHHHHHH
Confidence            44 23345444433 222222 2233445666655   8888888887663    4556788999999999999999999


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEec
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIK  240 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~  240 (413)
                      +.+++.|++|+++++|++|..  +  ++.|.|++.+|.+++||.||+|+|.|+..+....   .+|+.+.+|+++.+..+
T Consensus       425 ~~a~~~Gv~i~~~t~V~~l~~--~--~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p~rGq~~~~~~~  497 (676)
T 3ps9_A          425 ELAQQQGLQIYYQYQLQNFSR--K--DDCWLLNFAGDQQATHSVVVLANGHQISRFSQTS---TLPVYSVAGQVSHIPTT  497 (676)
T ss_dssp             HHHHHTTCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCGGGGGCSTTTT---TCSCEEEEEEEEEEECC
T ss_pred             HHHHhCCCEEEeCCeeeEEEE--e--CCeEEEEECCCCEEECCEEEECCCcchhcccccc---CCcceeecCEEEEECCC
Confidence            999999999999999999998  6  4568899888777999999999999998777654   46899999999988743


Q ss_pred             CCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEec-CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCC---CC
Q 015088          241 EGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIAL-HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRV---DS  316 (413)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~---~~  316 (413)
                      +.    ..   .++.....+   .|++|....++.+.+|. ......++   ... .+..+.+++.+.+++|.+.   +.
T Consensus       498 ~~----~~---~l~~~l~~~---~Yl~P~~~~~g~~~iG~t~~~~~~d~---~~~-~~~~~~~l~~l~~~~P~l~~~~~~  563 (676)
T 3ps9_A          498 PE----LA---ELKQVLCYD---GYLTPQNPANQHHCIGASYHRGSEDT---AYS-EDDQQQNRQRLIDCFPQAQWAKEV  563 (676)
T ss_dssp             TT----GG---GCCSEEESS---SEECCCBTTTTEEEEECCCEETCCCC---CCC-HHHHHHHHHHHHHHSTTCHHHHTC
T ss_pred             cc----cc---cCCceeECC---eeeccccCCCCeEEEeeccCCCCCCC---CCC-HHHHHHHHHHHHHhCCCccccccC
Confidence            32    11   133344433   69999862235454443 22111111   111 2256788889999999865   11


Q ss_pred             -CCCeeeceeeeeecCCCCeEecCCCC-----------------------CCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088          317 -NGPVATQLCMYSITPDEDFVIDFLGG-----------------------EFGEDVVVAGGFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       317 -~~~~~~~~g~~~~t~d~~p~ig~~~~-----------------------~~~~~~~~~~G~~~~G~~~a~~~a~~la~~  372 (413)
                       ..+...|+|+|++|+|++|+||++|+                       .  +|+|+++|+||+|+++||++|++||++
T Consensus       564 d~~~~~~~~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~--~~l~~a~G~g~~Gl~~Ap~~ae~lA~~  641 (676)
T 3ps9_A          564 DVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVF--DDLFMFAALGSRGLCSAPLCAEILAAQ  641 (676)
T ss_dssp             CCTTCCEEEEEEEECTTCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCCEE--EEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEeCccCCcCCccCcCCChHHHHHHHHhhhccccccccCCCC--CCEeeeecccccHHHHHHHHHHHHHHH
Confidence             24678999999999999999999875                       4  799999999999999999999999999


Q ss_pred             HhcCCCCccc---cccccccccccCCCCCCccc
Q 015088          373 VLSGEAQGVE---LQHFRISRFKENPKGNVKDY  402 (413)
Q Consensus       373 i~~g~~~~~~---~~~~~~~R~~~~~~~~~~~~  402 (413)
                      |. |++.+.+   ++.|+|+||...++.++++.
T Consensus       642 i~-g~~~pl~~~~l~~~~p~Rf~~r~l~~~~~~  673 (676)
T 3ps9_A          642 MS-DEPIPMDASTLAALNPNRLWVRKLLKGKAV  673 (676)
T ss_dssp             HT-TCCCSSBHHHHHTTCTTHHHHHHHHTTC--
T ss_pred             Hc-CCCCCCCHHHHhhhChHHhHHHHHhccCCC
Confidence            98 7765666   79999999998877766654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=100.00  E-value=1.7e-40  Score=332.92  Aligned_cols=364  Identities=16%  Similarity=0.133  Sum_probs=264.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC--ChHHH----HHHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED--YYHPM----VLESCLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~--~~~~l----~~~~~~~~~~~~~   80 (413)
                      .+||+|||||++|+++|++|+++|++|+|||++...+ .+++....+.+.......  ....+    ...+...|.++..
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g-~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  342 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPA-QGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLE  342 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTT-CSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccc-cccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999999999999999987654 345556666666544322  12232    2335566666622


Q ss_pred             HhCCee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCcc---ccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           81 EIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQ---VLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                       .+..+ +...+.+.+... ..... ....+...+++.+   .++.+++.+..+.    +....+++.+.++.++|..++
T Consensus       343 -~~~~~~~~~~g~l~~~~~-~~~~~-~~~~~~~~g~~~~~~~~l~~~~~~~~~~l----~~~~gg~~~p~~g~v~p~~l~  415 (689)
T 3pvc_A          343 -QGIAFDHQWCGVSQLAFD-DKSRG-KIEKMLHTQWPVEFAEAMSREQLSELAGL----DCAHDGIHYPAGGWLCPSDLT  415 (689)
T ss_dssp             -TTCCCCEECCCEEEECCS-HHHHH-HHHHHTTSCCCTTTCEEECHHHHHHHHSS----CCSSCEEEETTCEEECHHHHH
T ss_pred             -hccccccccCceEEeccC-HHHHH-HHHHHHhcCCChHHhhccCHHHHHHhcCC----CcccceEEecCCeEECHHHHH
Confidence             23333 334455554432 22222 2233445566655   8888888887763    456678899999999999999


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEE
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVC  235 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~  235 (413)
                      ..|.+.+++.|++|+++++|++|..  +  ++.|.|++.+|. +++||.||+|+|.|+..+...+   .+|+.+.+|+++
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~--~--~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~---~lpl~p~rGq~~  488 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKR--I--DSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTH---HLPLSAVRGQVS  488 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEE--C--SSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTT---TSCCEEEEEEEE
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEE--e--CCeEEEEeCCCcEEEECCEEEECCCcchhcccccc---CCccccccCcEE
Confidence            9999999999999999999999998  7  345889998886 6999999999999998777654   468999999999


Q ss_pred             EEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecC-CCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCC
Q 015088          236 YWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALH-GGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRV  314 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  314 (413)
                      .+..++.    ..   .++.+...+   .|++|....+|.+.+|.. .....+++   .. .+..+.+++.+.+++|.+.
T Consensus       489 ~~~~~~~----~~---~l~~v~~~~---~Yl~P~~~~~g~~~iGat~~~~~~d~~---~~-~~~~~~ll~~l~~~~P~l~  554 (689)
T 3pvc_A          489 HIPTTPV----LS---QLQQVLCYD---GYLTPVNPANQHHCIGASYQRGDIATD---FR-LTEQQENRERLLRCLPQVS  554 (689)
T ss_dssp             EEECCTT----GG---GCCSEEESS---SEECCCBTTTTEEEEECCCEETBCCCC---CC-HHHHHHHHHHHHHHCTTCS
T ss_pred             EECCCCc----cc---cCCeeEeCC---ceEccccCCCCeEEEEEeccCCCCCCC---CC-HHHHHHHHHHHHHhCCCcc
Confidence            8874432    11   134444433   699998622355555432 21111211   11 2256788899999999876


Q ss_pred             -----CCCCCeeeceeeeeecCCCCeEecCCCC-------------------------------CCCCCEEEEeCCCCCC
Q 015088          315 -----DSNGPVATQLCMYSITPDEDFVIDFLGG-------------------------------EFGEDVVVAGGFSGHG  358 (413)
Q Consensus       315 -----~~~~~~~~~~g~~~~t~d~~p~ig~~~~-------------------------------~~~~~~~~~~G~~~~G  358 (413)
                           +. .+...|+|+|++|+|+.|+||++|+                               .  +|+|+++|+||+|
T Consensus       555 ~~~~~~~-~~~~~w~G~R~~t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~--~~l~~a~G~g~~G  631 (689)
T 3pvc_A          555 WPQQVDV-SDNQARCGVRCAIRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVW--PELFMVGGLGSRG  631 (689)
T ss_dssp             GGGGCCC-TTCCEEEEEEEECTTSCCEEEEEECHHHHHHHSTTHHHHC--------CCCCCCCEE--EEEEEEECCTTCH
T ss_pred             ccccccc-cccceeEEEeeecCCCCcccCcCCCHHHHHHHHHhhhccccccccccccccccCCCC--CChHHhhcccccH
Confidence                 22 4678999999999999999999875                               4  7999999999999


Q ss_pred             CccchHHHHHHHHHHhcCCCCccc---cccccccccccCCCCCCcccc
Q 015088          359 FKMAPAVGRILADLVLSGEAQGVE---LQHFRISRFKENPKGNVKDYE  403 (413)
Q Consensus       359 ~~~a~~~a~~la~~i~~g~~~~~~---~~~~~~~R~~~~~~~~~~~~~  403 (413)
                      +++||++|++||++|+ |++.+.+   ++.|+|+||...++.++|+..
T Consensus       632 l~~ap~~ae~lA~~i~-g~~~p~~~~~l~~~~p~Rf~~r~l~~~~~~~  678 (689)
T 3pvc_A          632 LCSAPLVAEILAAQMF-GEPLPLDAKTLAALNPNRFWIRKLLKGRPVQ  678 (689)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCSSCHHHHHTTCTTHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHc-CCCCCCCHHHHhhcChhHHHHHHHhcCCccc
Confidence            9999999999999998 7766666   899999999998888777763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=100.00  E-value=8.3e-41  Score=313.83  Aligned_cols=356  Identities=19%  Similarity=0.224  Sum_probs=262.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSE   81 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~   81 (413)
                      +.++||+|||||++|+++|++|+++|++|+|||+....+  ++|..+.+.+.....   ...+..+...+.+.|.++.+.
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~--g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   92 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG--RTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEE   92 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTT--THHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCc--ccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999987653  455555666655443   234567777777777665544


Q ss_pred             h----CCee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           82 I----GYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        82 ~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      .    +..+ +...+.+.+... ......+..... . ...+.++.+++.+.+|. +. .....+++.+.++.++|..+.
T Consensus        93 ~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~p~-~~-~~~~~~~~~~~~~~~~~~~~~  167 (382)
T 1ryi_A           93 LYALSGVDIRQHNGGMFKLAFS-EEDVLQLRQMDD-L-DSVSWYSKEEVLEKEPY-AS-GDIFGASFIQDDVHVEPYFVC  167 (382)
T ss_dssp             HHHHHCCCCCCBCCCEEEEESS-HHHHHHHHTTTT-S-TTEEEEEHHHHHHHCTT-SC-TTCCEEEEETTCCBCCHHHHH
T ss_pred             HHHhhCCCcCeeecceEEEEeC-HHHHHHHHHHhh-c-CCeEEECHHHHHHhCCC-CC-cccceEEEeCCCeEEcHHHHH
Confidence            3    5554 334455544332 222222222211 1 45678888888888886 43 344567888889999999999


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEE
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCY  236 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~  236 (413)
                      +.|.+.+++.|++++++++|++|..  +  ++.+.|.+.+| +++||.||+|+|.|+..+.+.+ +..+++.+.+++++.
T Consensus       168 ~~l~~~~~~~g~~i~~~~~v~~i~~--~--~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~-~~~~~~~~~~g~~~~  241 (382)
T 1ryi_A          168 KAYVKAAKMLGAEIFEHTPVLHVER--D--GEALFIKTPSG-DVWANHVVVASGVWSGMFFKQL-GLNNAFLPVKGECLS  241 (382)
T ss_dssp             HHHHHHHHHTTCEEETTCCCCEEEC--S--SSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHT-TCCCCCEEEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEcCCcEEEEEE--E--CCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhc-CCCCceeccceEEEE
Confidence            9999999999999999999999987  6  34567888777 5999999999999998888876 888899999999988


Q ss_pred             EEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHHHHHHHhhcCCCCC
Q 015088          237 WRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSLKEWIQGRFAGRVD  315 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      ++.+...   +    ... +..   ...|++|..+  +.+.+|..... ..++.    ...+..+.+.+.+.+++|.+.+
T Consensus       242 ~~~~~~~---~----~~~-~~~---~~~~~~p~~~--g~~~vG~~~~~~~~~~~----~~~~~~~~l~~~~~~~~p~l~~  304 (382)
T 1ryi_A          242 VWNDDIP---L----TKT-LYH---DHCYIVPRKS--GRLVVGATMKPGDWSET----PDLGGLESVMKKAKTMLPAIQN  304 (382)
T ss_dssp             EECCSSC---C----CSE-EEE---TTEEEEECTT--SEEEEECCCEETCCCCS----CCHHHHHHHHHHHHHHCGGGGG
T ss_pred             ECCCCCC---c----cce-EEc---CCEEEEEcCC--CeEEEeecccccCCCCC----CCHHHHHHHHHHHHHhCCCcCC
Confidence            8743211   1    111 222   2478888754  44555542211 11111    1123678899999999998875


Q ss_pred             CCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccc-ccccccccccC
Q 015088          316 SNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVEL-QHFRISRFKEN  394 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~-~~~~~~R~~~~  394 (413)
                      . .+...|+|+|++|+|+.|+||++|..  +|+|+++|++|+|+++||.+|+++|++|.++.. +.++ +.|+|+||...
T Consensus       305 ~-~~~~~w~g~~~~t~d~~p~ig~~~~~--~~l~~~~G~~g~G~~~a~~~g~~la~~i~~~~~-~~~~~~~~~~~Rf~~~  380 (382)
T 1ryi_A          305 M-KVDRFWAGLRPGTKDGKPYIGRHPED--SRILFAAGHFRNGILLAPATGALISDLIMNKEV-NQDWLHAFRIDRKEAV  380 (382)
T ss_dssp             S-EEEEEEEEEEEECSSSCCEEEEETTE--EEEEEEECCSSCTTTTHHHHHHHHHHHHTTCCC-CHHHHHHTCSCCC---
T ss_pred             C-ceeeEEEEecccCCCCCcEeccCCCc--CCEEEEEcCCcchHHHhHHHHHHHHHHHhCCCC-CchhhcCCChhhcccC
Confidence            4 56789999999999999999999876  899999999999999999999999999985544 5677 99999999754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=100.00  E-value=3.2e-38  Score=322.91  Aligned_cols=372  Identities=17%  Similarity=0.189  Sum_probs=274.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|++|+++|+ +|+|||++...+..+++..+.+.+...........+...+.+.|.++.. .+.
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~-~~~   81 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTE-DGV   81 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEE-TTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHh-hCC
Confidence            36899999999999999999999998 9999999886533345555556665544444556677777888887742 333


Q ss_pred             eeEEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ..+...+.+.+....  ...+....+.....|++.+.++.+++.+.+|. +.......+++.+.++.++|..++..|.+.
T Consensus        82 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~~~~~l~~~e~~~~~p~-l~~~~~~gg~~~~~~g~v~p~~l~~~L~~~  160 (830)
T 1pj5_A           82 SCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPL-LDGENILGGLHVPSDGLASAARAVQLLIKR  160 (830)
T ss_dssp             ESEECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTT-SCGGGCCEEEEETTCEEECHHHHHHHHHHH
T ss_pred             CCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCCCeEEECHHHHHHhCcc-CCccceEEEEEECCCceEcHHHHHHHHHHH
Confidence            445566666654432  22344555566778888999999999999887 543445678899999999999999999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCC
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEG  242 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~  242 (413)
                      +++.|++|+++++|++|..  ++ +..+.|.+.+|+ ++||.||+|+|.|+..+.+.+ +..+|+.|.+++++.+...+.
T Consensus       161 a~~~Gv~i~~~t~V~~i~~--~~-~~v~~V~t~~G~-i~Ad~VV~AaG~~s~~l~~~~-g~~~pl~p~~g~~~~~~~~~~  235 (830)
T 1pj5_A          161 TESAGVTYRGSTTVTGIEQ--SG-GRVTGVQTADGV-IPADIVVSCAGFWGAKIGAMI-GMAVPLLPLAHQYVKTTPVPA  235 (830)
T ss_dssp             HHHTTCEEECSCCEEEEEE--ET-TEEEEEEETTEE-EECSEEEECCGGGHHHHHHTT-TCCCCCEEEEEEEEEESCCGG
T ss_pred             HHHcCCEEECCceEEEEEE--eC-CEEEEEEECCcE-EECCEEEECCccchHHHHHHh-CCCccceeceeEEEEEecCcc
Confidence            9999999999999999987  62 234568888884 999999999999998887766 888999999999987753221


Q ss_pred             CCC-cc-ccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCC-CCCCC-----------------CCCCCCchhHHHH
Q 015088          243 NEA-DY-AVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGY-PCDPD-----------------RRPWGPGLLLDSL  302 (413)
Q Consensus       243 ~~~-~~-~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~~l  302 (413)
                      ... .. .....+|++...+ ..+|++|..+  +++.+++.... ..+|+                 ..... .+..+.+
T Consensus       236 ~~~~~~~~~~~~~pv~~~~~-~~~y~r~~~~--~l~iG~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~l  311 (830)
T 1pj5_A          236 QQGRNDQPNGARLPILRHQD-QDLYYREHGD--RYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSRLDFT-LEDFLPA  311 (830)
T ss_dssp             GTTTSCTTTCCCSCEEEEGG-GTEEEEEETT--EEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTEECCC-HHHHHHH
T ss_pred             cccccccccCCCCCeEEcCC-CCEEEEEeCC--eEEEeccCCCCcccCcccccccccccccccccccccCCC-HHHHHHH
Confidence            100 00 0012356554332 3478888653  44344332110 01110                 00111 2256788


Q ss_pred             HHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccc
Q 015088          303 KEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVE  382 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~  382 (413)
                      .+.+.+++|.+.+. .+...|+|+|++|+|+.|+||++|+.  +|+|+++|+   |+++||++|+++|++|.++.+ +.+
T Consensus       312 ~~~~~~~~P~l~~~-~i~~~w~G~r~~t~D~~PiIG~~p~~--~gl~va~G~---G~~~ap~~g~~la~li~~~~~-~~d  384 (830)
T 1pj5_A          312 WEATKQLLPALADS-EIEDGFNGIFSFTPDGGPLLGESKEL--DGFYVAEAV---WVTHSAGVAKAMAELLTTGRS-ETD  384 (830)
T ss_dssp             HHHHHHHCGGGGGS-CEEEEEEEEEEECTTSCCEEEECSSS--BTEEEEESC---CGGGHHHHHHHHHHHHHHSSC-SSC
T ss_pred             HHHHHHhCcccccc-CcceEEEeecccCCCCCeeeccCCCC--CCEEEEECc---hHHhhHHHHHHHHHHHhCCCC-Ccc
Confidence            99999999998864 67789999999999999999999987  999999986   799999999999999996665 567


Q ss_pred             cccccccccccCC
Q 015088          383 LQHFRISRFKENP  395 (413)
Q Consensus       383 ~~~~~~~R~~~~~  395 (413)
                      +..|+|+||...+
T Consensus       385 l~~~~~~Rf~~~~  397 (830)
T 1pj5_A          385 LGECDITRFEDVQ  397 (830)
T ss_dssp             CTTTBGGGCCGGG
T ss_pred             ccccChhhhcccc
Confidence            8999999998643

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=1.5e-37  Score=290.21  Aligned_cols=345  Identities=17%  Similarity=0.146  Sum_probs=251.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHHh
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      .++||+|||||++|+++|++|+++|++|+|||++...+ .+++..+.+.++....   ......+...+...|.++....
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG-TGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAAR   81 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS-CSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC-CccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999999986543 3455556666654332   2224567777888888888887


Q ss_pred             CCeeEEeeceeeeCCCC--hhhHHHHHHHHhhCCCC-ccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSE--NKSLRSVIASCRKNSVP-HQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                      +.. +...+.+.+....  ...+....+.....+++ .+.++.+++.+.+|. +   ....+.+.+..+.+++..+.+.|
T Consensus        82 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~-~---~~~~~~~~~~~~~~~~~~~~~~l  156 (369)
T 3dme_A           82 GVP-HQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPA-L---HCTAALVSPSTGIVDSHALMLAY  156 (369)
T ss_dssp             TCC-EECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTT-C---CCSEEEEETTCEEECHHHHHHHH
T ss_pred             CCC-cccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCC-c---eeeeeeECCCCEEECHHHHHHHH
Confidence            766 3455555554322  22345666677788887 889999999998887 3   35678888999999999999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCChHHhhhhhcCCc----cceeEEEEE
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAWVGKLVKRITGLE----LPIQAVETT  233 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~----~~~~~~~g~  233 (413)
                      .+.+++.|++++++++|++|..  ++ ++.+.|.+.+|  .+++||.||+|+|.|+..+++.+.|+.    .++.|.+|+
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~  233 (369)
T 3dme_A          157 QGDAESDGAQLVFHTPLIAGRV--RP-EGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGS  233 (369)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEE--CT-TSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEE
T ss_pred             HHHHHHCCCEEECCCEEEEEEE--cC-CceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceE
Confidence            9999999999999999999988  63 24477888888  379999999999999998887653553    479999999


Q ss_pred             EEEEEecCCCCCccccCCCCCeEEEc--CCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcC
Q 015088          234 VCYWRIKEGNEADYAVGGDFPSFASY--GDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFA  311 (413)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      ++.++.+...        ....+...  +...+++.+..+  |.+.+|.+.....+ .....+ .+..+.+.+.+.+++|
T Consensus       234 ~~~~~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~--g~~~iG~t~e~~~~-~~~~~~-~~~~~~l~~~~~~~~P  301 (369)
T 3dme_A          234 YFTLAGRAPF--------SRLIYPVPQHAGLGVHLTLDLG--GQAKFGPDTEWIAT-EDYTLD-PRRADVFYAAVRSYWP  301 (369)
T ss_dssp             EEECSSSCSC--------SSEEEECTTCSSCCCCEEECTT--SCEEECCCCEEESS-CCCCCC-GGGGGGHHHHHHTTCT
T ss_pred             EEEECCCCcc--------CceeecCCCCCCceEEEeCccC--CcEEECCCcccccc-cccccC-HHHHHHHHHHHHHHCC
Confidence            8766532110        01111110  111233333332  44555442211001 111111 2267889999999999


Q ss_pred             CCCCCCCCeeeceeeeeec-----CCCCeEe-cC-CCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088          312 GRVDSNGPVATQLCMYSIT-----PDEDFVI-DF-LGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~t-----~d~~p~i-g~-~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      .+.+. .+...|+|+||.+     +|+.|+| |+ ++..  +|+|+++|++++|++++|++|+++|++|.
T Consensus       302 ~l~~~-~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~--~~l~~~~G~~~~G~t~ap~~a~~~a~~i~  368 (369)
T 3dme_A          302 ALPDG-ALAPGYTGIRPKISGPHEPAADFAIAGPASHGV--AGLVNLYGIESPGLTASLAIAEETLARLA  368 (369)
T ss_dssp             TCCTT-CCEEEEEEEEEESSCTTSCCCCCEEECHHHHCC--TTEEEEECCCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCChh-hceecceeccccccCCCCCcCCeEEecccccCC--CCEEEEeCCCCchHhccHHHHHHHHHHhh
Confidence            99864 6788999999996     5789988 87 4665  89999999999999999999999999984

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=100.00  E-value=8.2e-36  Score=276.44  Aligned_cols=312  Identities=10%  Similarity=0.001  Sum_probs=220.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC------CcEEEEcccCCCCCCCcccCCCceeecccCC---CChHHHHHHHHHHHHHH
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG------QKTLLLEQFDFLHHRGSSHGESRTIRATYPE---DYYHPMVLESCLLWEQA   78 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g------~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~   78 (413)
                      +||+|||||++|+++|++|+++|      ++|+|||+....  .++|..+++.+......   .....+...+.+.|.++
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~--~~aS~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP--LTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSH   78 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG--GSGGGTCCCBCCCCSSCCSCTHHHHHHHHHHHHHHTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC--CCccccCcceeecccCCCchHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999998      999999998754  35666667776653322   22334445555555554


Q ss_pred             HHHhC---CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHH
Q 015088           79 QSEIG---YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKA  155 (413)
Q Consensus        79 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (413)
                      ..+..   ..+....+.+.......      ...+...+.+++.++.+++ +.+|.      ...+++.+ +++++|..+
T Consensus        79 ~~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~l~~~e~-~~~p~------~~~~~~~~-~~~v~p~~~  144 (351)
T 3g3e_A           79 VHSPNAENLGLFLISGYNLFHEAIP------DPSWKDTVLGFRKLTPREL-DMFPD------YGYGWFHT-SLILEGKNY  144 (351)
T ss_dssp             TTSTTHHHHTEEEEEEEEEESSCCC------CCGGGGTSEEEEECCHHHH-TTCTT------CCEEEEEE-EEEECHHHH
T ss_pred             hhccCCCCccEEEEEEEEEecCCcc------ccCHHHhCCCceECCHHHh-ccCCC------CceEEEec-ceEEcHHHH
Confidence            43321   12223444444333221      1223456677788898887 34443      34566666 589999999


Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEE
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~  235 (413)
                      ++.|.+.+++.|+++++ ++|+++..  .+            . ++||.||+|+|.|+..+++.     .++.|.+|+++
T Consensus       145 ~~~l~~~~~~~Gv~i~~-~~V~~i~~--~~------------~-~~a~~VV~A~G~~s~~l~~~-----~~l~p~rg~~~  203 (351)
T 3g3e_A          145 LQWLTERLTERGVKFFQ-RKVESFEE--VA------------R-EGADVIVNCTGVWAGALQRD-----PLLQPGRGQIM  203 (351)
T ss_dssp             HHHHHHHHHHTTCEEEE-CCCCCHHH--HH------------H-TTCSEEEECCGGGGGGTSCC-----TTCEEEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEE-EEeCCHHH--hh------------c-CCCCEEEECCCcChHhhcCC-----CceeecCCcEE
Confidence            99999999999999998 88888755  31            1 67999999999999877643     68999999999


Q ss_pred             EEEecCCCCCccccCCCCCeEEE----cCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcC
Q 015088          236 YWRIKEGNEADYAVGGDFPSFAS----YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFA  311 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p  311 (413)
                      .++.+. .        ..+++..    ..+..+|++|..+  +++.+++......++.   . ..+..+.+.+.+.+++|
T Consensus       204 ~~~~~~-~--------~~~~~~~~~~~~~~~~~y~~p~~~--~~~iGg~~~~~~~~~~---~-~~~~~~~l~~~~~~~~P  268 (351)
T 3g3e_A          204 KVDAPW-M--------KHFILTHDPERGIYNSPYIIPGTQ--TVTLGGIFQLGNWSEL---N-NIQDHNTIWEGCCRLEP  268 (351)
T ss_dssp             EEECTT-C--------CSEEEECCTTTCTTCSCEEEECSS--CEEEECCCEETCCCCS---C-CHHHHHHHHHHHHHHCG
T ss_pred             EEeCCC-c--------ceEEEeccccCCCCceeEEEeCCC--cEEEeeeeecCCCCCC---C-CHHHHHHHHHHHHHhCC
Confidence            887421 1        1233221    1234589999865  5555444221111111   1 12368899999999999


Q ss_pred             CCCCCCCCeeeceeeeeecCCCCeE----ecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088          312 GRVDSNGPVATQLCMYSITPDEDFV----IDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLS  375 (413)
Q Consensus       312 ~~~~~~~~~~~~~g~~~~t~d~~p~----ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~  375 (413)
                      .+.+. ++...|+|+||+|+| .|+    ||.+|..  +|+|+++||+|+|+++||++|+++|++|.+
T Consensus       269 ~l~~~-~i~~~w~G~r~~t~D-~p~~~~~ig~~~~~--~~~~~~~G~~g~G~~~ap~~g~~la~li~~  332 (351)
T 3g3e_A          269 TLKNA-RIIGERTGFRPVRPQ-IRLEREQLRTGPSN--TEVIHNYGHGGYGLTIHWGCALEAAKLFGR  332 (351)
T ss_dssp             GGGGC-EEEEEEEEEEEECSS-CEEEEEEECCSSSC--EEEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCC-cEeeeeEeeCCCCCC-ccceeeeccCCCCC--CeEEEEeCCCcchHhhhHHHHHHHHHHHHH
Confidence            98764 678899999999999 874    7777766  899999999999999999999999999984

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=100.00  E-value=4.3e-35  Score=276.42  Aligned_cols=325  Identities=17%  Similarity=0.108  Sum_probs=219.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCc-ee--ecccCCCChHHHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESR-TI--RATYPEDYYHPMVLESCLLWEQAQS   80 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~   80 (413)
                      .++||+|||||++|+++|++|+++  |++|+|||+....++  ++..+.+ .+  ...+... +..+...+.+.|.+   
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~--~s~~~~g~~i~~~~~~~~~-~~~l~~~~~~~~~~---  108 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE--EGATILAPGVWTAQDIPAG-QEAQAEWTREQLLG---  108 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCT--TSHHHHCCCEECGGGCCTT-CHHHHHHHHHHHHT---
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc--chhccCCcceeecccCCch-HHHHHHHHHHHHHH---
Confidence            358999999999999999999999  999999999866533  2222223 12  3333333 56677777777765   


Q ss_pred             HhCC--ee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCccc----CCCCeEEEEecCCceeChH
Q 015088           81 EIGY--KV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIE----IPENWVGVATELGGVIKPT  153 (413)
Q Consensus        81 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  153 (413)
                      ..+.  +. +...+.+.....           ....+    .++.+++.+.+|. +.    .+....+++.+..+++++.
T Consensus       109 ~~~~~~~~~~~~~g~l~~~~~-----------~~~~g----~l~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~g~v~~~  172 (405)
T 3c4n_A          109 ALGSGKTLEVEDRPLLHLLPA-----------GEGSG----LTPTLDALADFPE-ALALLDPARLPVARVDPRALTYRPG  172 (405)
T ss_dssp             GGGSSCCCCEEECCEEEEESS-----------CCSSS----CEEHHHHTTTCHH-HHTTSCTTTSCEEEEETTCEEECHH
T ss_pred             HhCCCCCCcEEeeCeEEehhh-----------HhHCC----CCCHHHHHHhCCC-ccccccCCcceEEEEcCCCEEEcHH
Confidence            3333  22 344444432111           01112    3444444444332 22    1456678889999999999


Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEE---------EEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhh-hhcCC
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVK---------TVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVK-RITGL  223 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~---------~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~-~~~g~  223 (413)
                      .++..|.+.+++.|++++++++|+         ++..  +  ++.+.|++.+| +++||.||+|+|.|+..+.+ .+ +.
T Consensus       173 ~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~--~--~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~-g~  246 (405)
T 3c4n_A          173 SLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV--T--NTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGL-GL  246 (405)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-----------CBCCE-EEEEEEEEECCGGGHHHHHHHHH-CC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe--e--CCeEEEEECCc-EEECCEEEECCCccHHHHHHHhc-CC
Confidence            999999999999999999999999         8876  5  34557777777 59999999999999988888 66 88


Q ss_pred             ccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC---CCCCCCCC------CCCC
Q 015088          224 ELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG---GYPCDPDR------RPWG  294 (413)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~---~~~~~~~~------~~~~  294 (413)
                      .+++.+.+++++.++.+..   .+     .+.+. .  ..+|++|..+  +.+.+|...   ....+++.      ....
T Consensus       247 ~~~~~~~~g~~~~~~~~~~---~~-----~~~~~-~--~~~y~~p~~~--g~~~~G~t~~~~~~~~~~~~~~~~~~~~~~  313 (405)
T 3c4n_A          247 HTRHGRAYRQFPRLDLLSG---AQ-----TPVLR-A--SGLTLRPQNG--GYTLVPAIHHRDPHGYHPAGGSLTGVPTGL  313 (405)
T ss_dssp             CCCCEEEEEECCEECSCCC---TT-----CCEEE-E--TTEEEEEETT--EEEEECCCCSCBCSSCCCCCCCBTTBCCSS
T ss_pred             CCCcccceeEEEEECCCCc---cC-----CCeEE-C--CcEEEEEcCC--CeEEEeccccccccCcCcccccccccccCC
Confidence            8899999999877653221   00     12222 2  2489998765  555554421   11112110      0111


Q ss_pred             CchhHHHHHHHHHhhcCCCCCCC--------CCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHH
Q 015088          295 PGLLLDSLKEWIQGRFAGRVDSN--------GPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVG  366 (413)
Q Consensus       295 ~~~~~~~l~~~~~~~~p~~~~~~--------~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a  366 (413)
                      ..+..+.+.+.+ ++||.+.+..        .+...|+|+||+|+|+.|+||+++    +|+|+++|++|+ ++++|++|
T Consensus       314 ~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~t~D~~P~ig~~~----~gl~~a~G~~g~-~~~ap~~a  387 (405)
T 3c4n_A          314 RRELLEDLVGLM-DAVPALAGEGLELGRSSADVPGAWLALPGGRPDAPPQAEELA----PGLHLLLGGPLA-DTLGLAAA  387 (405)
T ss_dssp             CHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGGSCEEEEEEGGGCTTCCCEEEEEE----TTEEEEECCTTH-HHHHHHHH
T ss_pred             CHHHHHHHHHHH-HhCCCccccCccccccccceeeEEEeecCcCCCCCCEecccC----CCeEEEEccCcH-HHHHHHHH
Confidence            122455565544 8899887541        167799999999999999999987    789999999886 59999999


Q ss_pred             HHHHHHHhcCC
Q 015088          367 RILADLVLSGE  377 (413)
Q Consensus       367 ~~la~~i~~g~  377 (413)
                      +++|++|.++.
T Consensus       388 ~~la~~i~~~~  398 (405)
T 3c4n_A          388 HELAQRVSASL  398 (405)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhCch
Confidence            99999998543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=100.00  E-value=2e-33  Score=261.66  Aligned_cols=317  Identities=13%  Similarity=0.016  Sum_probs=213.2

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCC---cccCCCceeeccc---CCCChHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRG---SSHGESRTIRATY---PEDYYHPMVLESCLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~---~s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~   77 (413)
                      |+.++||+|||||++|+++|++|+++|++|+|||+.....+..   ++...++.+....   .......+...+.+.|.+
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVE   82 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHHH
Confidence            4557899999999999999999999999999999987553211   1222223332221   223345666677777777


Q ss_pred             HHHH-hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           78 AQSE-IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        78 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      +... .++.   ..+.+.+...+..   ...++++..+.+++.++.+++    |.      ...+.+. .+++++|..++
T Consensus        83 ~~~~~~g~~---~~~~~~~~~~~~~---~~~~~~~~~g~~~~~l~~~~~----p~------~~~g~~~-~~~~v~p~~~~  145 (363)
T 1c0p_A           83 LVPTGHAMW---LKGTRRFAQNEDG---LLGHWYKDITPNYRPLPSSEC----PP------GAIGVTY-DTLSVHAPKYC  145 (363)
T ss_dssp             HTTTTSSEE---EEEEEEEESSGGG---GGGGTTTTTSTTCEECCGGGS----ST------TCEEEEE-EEEECCHHHHH
T ss_pred             hCcccCCeE---EECCEEEEecCcc---chhHHHHHhCCCcEECCHHHC----CC------ceEEEEE-ecceecHHHHH
Confidence            7544 4433   2223322222211   122234455666677776543    21      2235555 67899999999


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEE
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCY  236 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~  236 (413)
                      ..|.+.+++.|++++. ++|+++..  +        .     + +||.||+|+|.|+..+...   ...++.|.+|+++.
T Consensus       146 ~~l~~~~~~~G~~i~~-~~v~~l~~--~--------~-----~-~a~~VV~A~G~~s~~l~~~---~~~~~~p~rg~~~~  205 (363)
T 1c0p_A          146 QYLARELQKLGATFER-RTVTSLEQ--A--------F-----D-GADLVVNATGLGAKSIAGI---DDQAAEPIRGQTVL  205 (363)
T ss_dssp             HHHHHHHHHTTCEEEE-CCCSBGGG--T--------C-----S-SCSEEEECCGGGGGTSBTT---CCTTEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEE-EEcccHhh--c--------C-----c-CCCEEEECCCcchhhccCc---ccCCccccCCeEEE
Confidence            9999999999999998 88888744  2        1     1 6999999999999877653   36789999999998


Q ss_pred             EEecCCCCCccccCCCCCeEEEc-CCCceEecCCCCCCCcEEEecCCCC-CCCCCCCCCCCchhHHHHHHHHHhhcCCCC
Q 015088          237 WRIKEGNEADYAVGGDFPSFASY-GDPYIYGTPSLEYPGLIKIALHGGY-PCDPDRRPWGPGLLLDSLKEWIQGRFAGRV  314 (413)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  314 (413)
                      ++.+..          ++.+... .....|++|..+  +.+.+|.+... ..+.   .. ..+..+.+.+.+.+++|.+.
T Consensus       206 ~~~~~~----------~~~~~~~~~~~~~y~~p~~~--g~~~iG~t~~~~~~~~---~~-~~~~~~~l~~~~~~~~P~l~  269 (363)
T 1c0p_A          206 VKSPCK----------RCTMDSSDPASPAYIIPRPG--GEVICGGTYGVGDWDL---SV-NPETVQRILKHCLRLDPTIS  269 (363)
T ss_dssp             EECCCC----------CCEEECSCTTCCEEEEEETT--TEEEEECCCEETCCCC---SC-CHHHHHHHHHHHHHHCGGGS
T ss_pred             EeCCcc----------cceEeeccCCCcEEEEEcCC--CEEEEEeeeccCCCCC---CC-CHHHHHHHHHHHHHhCcccc
Confidence            874331          1111111 112378888763  44555442211 1111   11 12267899999999999883


Q ss_pred             ------CCCCCeeeceeeeeecCCCCeEecCC-C-------C----------CC-C--CCEEEEeCCCCCCCccchHHHH
Q 015088          315 ------DSNGPVATQLCMYSITPDEDFVIDFL-G-------G----------EF-G--EDVVVAGGFSGHGFKMAPAVGR  367 (413)
Q Consensus       315 ------~~~~~~~~~~g~~~~t~d~~p~ig~~-~-------~----------~~-~--~~~~~~~G~~~~G~~~a~~~a~  367 (413)
                            +. +++..|+|+||+|+|+.|++|+. +       +          .+ .  +|+|+++||+|+|+++||++|+
T Consensus       270 ~~~~~~~~-~i~~~w~G~rp~t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~~a~G~~g~G~~~a~~~g~  348 (363)
T 1c0p_A          270 SDGTIEGI-EVLRHNVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLVHAYGFSSAGYQQSWGAAE  348 (363)
T ss_dssp             SSSSGGGC-EEEEEEEEEEEEETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCcccccc-eEeeceEEECCCCCCCceeEEEecccccccccCccccccccccccccccceEEEecCCCCcchheeccHHH
Confidence                  23 57789999999999999998873 1       0          00 1  4799999999999999999999


Q ss_pred             HHHHHHh
Q 015088          368 ILADLVL  374 (413)
Q Consensus       368 ~la~~i~  374 (413)
                      ++|++|.
T Consensus       349 ~~a~li~  355 (363)
T 1c0p_A          349 DVAQLVD  355 (363)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999997

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.97  E-value=1.5e-29  Score=244.58  Aligned_cols=342  Identities=16%  Similarity=0.131  Sum_probs=226.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHHhCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ++||+|||||++|+++|+.|+++|++|+|||+.+..  .++|..+++.++....  ......+..++...+..+.+....
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~--~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~   80 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLA--CATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPH   80 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--CSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCC--CCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCc
Confidence            589999999999999999999999999999998754  3566677777664321  123356666777777666544332


Q ss_pred             eeEEeeceeeeCCCC---hhhHHHHHHHHhhCCCCccccCHHHHHHHc--CCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSE---NKSLRSVIASCRKNSVPHQVLDCRQVLEKY--SGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                       +....+.+......   ..............+ ..+.++.+++.+.+  |. +. .....+++. .+++++|..++..+
T Consensus        81 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~P~-l~-~~~~~~~~~-~~g~v~~~~l~~~l  155 (501)
T 2qcu_A           81 -IAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLG-KRTSLPGSTGLRFGANSV-LK-PEIKRGFEY-SDCWVDDARLVLAN  155 (501)
T ss_dssp             -TEEEEEEEEECCTTTSCHHHHHHHHHHHHSSS-CCSSSCCCEEEECCTTSS-BC-TTCCEEEEE-EEEEECHHHHHHHH
T ss_pred             -cccccCeEeccCcccchHHHHHHHHHHHHhcC-CcEEECHHHHHHhhcCCC-cc-hhceEEEEe-eCCEEcHHHHHHHH
Confidence             22222222111111   111111222222222 45666666555555  55 33 123334444 56889999999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCc--EEEcCEEEEcCCCChHHhhhh-hcCC--ccceeEEE
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGE--KFWGKKCVVTAGAWVGKLVKR-ITGL--ELPIQAVE  231 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~--~i~ad~VV~A~G~~s~~l~~~-~~g~--~~~~~~~~  231 (413)
                      .+.+.+.|++++++++|+++..  +  ++.+.|.+   .+|+  +++||.||+|+|+|+..+.+. + +.  ..++.|.+
T Consensus       156 ~~~a~~~Gv~i~~~~~V~~l~~--~--~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l-~~~~~~~i~p~r  230 (501)
T 2qcu_A          156 AQMVVRKGGEVLTRTRATSARR--E--NGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGM-HLPSPYGIRLIK  230 (501)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHT-CCCCSSCBCCEE
T ss_pred             HHHHHHcCCEEEcCcEEEEEEE--e--CCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhc-cCCcccccccce
Confidence            9999999999999999999988  6  35666766   3564  699999999999999988875 4 33  36899999


Q ss_pred             EEEEEEEecCCCCCccccCCCCCeEEE-cCCCceEecCCCCCCCcEEEecCCC-CCCCCCCCCCCCchhHHHHHHHHHhh
Q 015088          232 TTVCYWRIKEGNEADYAVGGDFPSFAS-YGDPYIYGTPSLEYPGLIKIALHGG-YPCDPDRRPWGPGLLLDSLKEWIQGR  309 (413)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~  309 (413)
                      |+++.++. . .    .  ...+.+.. .++..+|++|..+  +.+.+|+++. ...+++....+ .+..+.|++.+.++
T Consensus       231 G~~~~~~~-~-~----~--~~~~~~~~~~dg~~~~~~P~~~--g~~~iG~t~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  299 (501)
T 2qcu_A          231 GSHIVVPR-V-H----T--QKQAYILQNEDKRIVFVIPWMD--EFSIIGTTDVEYKGDPKAVKIE-ESEINYLLNVYNTH  299 (501)
T ss_dssp             EEEEEEEC-S-S----S--CSCEEEEECTTSCEEEEEEETT--TEEEEECCCEECCSCGGGCCCC-HHHHHHHHHHHHHH
T ss_pred             eEEEEECC-C-C----C--CceEEEeecCCCCEEEEEEcCC--CcEEEcCCCCCCCCCcCCCCCC-HHHHHHHHHHHHHh
Confidence            99987762 1 1    1  11233332 2345689999764  5555554321 11122111111 22688999999999


Q ss_pred             cC-CCCCCCCCeeeceeeeeecCCCCeEecCCCCC---------CCCCEEEEeCCCCCCCccchHHHHHHHHHHhc
Q 015088          310 FA-GRVDSNGPVATQLCMYSITPDEDFVIDFLGGE---------FGEDVVVAGGFSGHGFKMAPAVGRILADLVLS  375 (413)
Q Consensus       310 ~p-~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~---------~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~  375 (413)
                      || .+.+. .++..|+|+||.++|+.|+++.++..         ..++++.++|   .|++.+|.+|+.+++++.+
T Consensus       300 ~p~~l~~~-~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~~~~gl~~i~G---g~~t~~~~~Ae~~~~~~~~  371 (501)
T 2qcu_A          300 FKKQLSRD-DIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFG---GKLTTYRKLAEHALEKLTP  371 (501)
T ss_dssp             BSSCCCGG-GCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEETTEEEEEEEEC---CCGGGHHHHHHHHHHHHGG
T ss_pred             cCCCCCcc-cEEEEEEEEeeecCCCCCccccCcCceEEEecccCCCCCeEEEeC---ccccchHHHHHHHHHHHHH
Confidence            99 67653 57789999999999999988877531         0023444443   3799999999999999984

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.97  E-value=3.9e-29  Score=244.49  Aligned_cols=342  Identities=15%  Similarity=0.100  Sum_probs=223.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+++..  .++|..+++.++....  ......+..++...+..+.....
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~--~GtS~~s~gli~~g~ryl~~~~~~l~~~~~~e~~~l~~~~~  108 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFA--EGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAP  108 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--CSGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC--CCcccccccccccccchhhccChHHHHHHHHHHHHHHHhCc
Confidence            3689999999999999999999999999999998765  3566666666654321  12223444555444443333211


Q ss_pred             CeeEEeeceee--eCCC-----Chhh---HHHHHHHHh---hCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCcee
Q 015088           84 YKVYFKAHQFD--MGPS-----ENKS---LRSVIASCR---KNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVI  150 (413)
Q Consensus        84 ~~~~~~~~~~~--~~~~-----~~~~---~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (413)
                       .+....+.+.  ....     ....   .....+++.   ..+...+.++.+++.+.+|. +..+....+++.+. +++
T Consensus       109 -~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~-l~~~~~~gg~~~~d-g~v  185 (571)
T 2rgh_A          109 -HIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPF-LKKEGLKGAGVYLD-FRN  185 (571)
T ss_dssp             -TSSEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTT-SCCTTEEEEEEECC-EEC
T ss_pred             -ccccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcC-CchhhceEEEEecC-CeE
Confidence             1111222221  1110     0111   122233332   34556788999999999987 54333444556654 788


Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCChHHhhhhhcCCc-
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAWVGKLVKRITGLE-  224 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~-  224 (413)
                      +|.+++..+.+.+++.|++|+++++|+++..  ++ +..+.|++.   +|  .+++||.||+|+|+|+..+.+.. +.. 
T Consensus       186 ~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~--~~-~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~-g~~~  261 (571)
T 2rgh_A          186 NDARLVIDNIKKAAEDGAYLVSKMKAVGFLY--EG-DQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLN-FTRP  261 (571)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSEEEEEEEE--ET-TEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTC-CSSC
T ss_pred             chHHHHHHHHHHHHHcCCeEEeccEEEEEEE--eC-CEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhh-ccCc
Confidence            9999999999999999999999999999988  63 244455531   23  26999999999999999888765 543 


Q ss_pred             --cceeEEEEEEEEEEecCCCCCccccCCCCCeEEE---cCCCceEecCCCCCCCcEEEecCCC-CCCCCCCCCCCCchh
Q 015088          225 --LPIQAVETTVCYWRIKEGNEADYAVGGDFPSFAS---YGDPYIYGTPSLEYPGLIKIALHGG-YPCDPDRRPWGPGLL  298 (413)
Q Consensus       225 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~y~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  298 (413)
                        .++.|.+|+++.++.....       ...+.+..   .++..+|++|..   +.+.+|+++. ...++..... ..+.
T Consensus       262 ~~~~i~p~rG~~l~~~~~~~~-------~~~~~~~~~~~~dgr~~~~~P~~---~~~~iG~t~~~~~~~~~~~~~-~~~~  330 (571)
T 2rgh_A          262 VSPKMRPTKGIHLVVDAKKLP-------VPQPTYFDTGKQDGRMVFAIPRE---NKTYFGTTDTDYQGDFTDPKV-TQED  330 (571)
T ss_dssp             CCCCBCCEEEEEEEEEGGGSC-------CSSCEEEECSSSSSCEEEEEEET---TEEEECCCCEECCSCSSSCCC-CHHH
T ss_pred             cCceeeccceEEEEeccccCC-------CCcEEEEeccCCCCcEEEEEEcC---CeEEEcCCCcCCCCCcCCCCC-CHHH
Confidence              5699999999988632210       11344443   234457888874   3455554331 1112211111 1236


Q ss_pred             HHHHHHHHHhhcCCC--CCCCCCeeeceeeeeecCCCC---------eEecCCCCCCCCCEEEEeCCCCCCCccchHHHH
Q 015088          299 LDSLKEWIQGRFAGR--VDSNGPVATQLCMYSITPDED---------FVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGR  367 (413)
Q Consensus       299 ~~~l~~~~~~~~p~~--~~~~~~~~~~~g~~~~t~d~~---------p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~  367 (413)
                      .+.|++.+.++||.+  .+. .++..|+|+||.++|+.         |+|+..+    ++++.++|  |. ++.++.+|+
T Consensus       331 ~~~ll~~~~~~~P~~~l~~~-~v~~~waG~Rp~~~d~~~~~~~~~r~~~i~~~~----~gl~~v~G--Gk-~Tt~r~~Ae  402 (571)
T 2rgh_A          331 VDYLLDVINHRYPEANITLA-DIEASWAGLRPLLIGNSGSPSTISRGSSLEREP----DGLLTLSG--GK-ITDYRKMAE  402 (571)
T ss_dssp             HHHHHHHHHHHSTTTCCCGG-GCCEEEEEEECCBCC-----------EEEEECT----TSCEEEEE--CC-GGGHHHHHH
T ss_pred             HHHHHHHHHHhcCccCCchh-ceeEEeEEeeeccCCCCCCcccCCCCcEEecCC----CCeEEEeC--cc-hhhHHHHHH
Confidence            889999999999974  432 56789999999998753         6776532    77886654  22 999999999


Q ss_pred             HHHHHHhc
Q 015088          368 ILADLVLS  375 (413)
Q Consensus       368 ~la~~i~~  375 (413)
                      .+++++.+
T Consensus       403 ~~~~~i~~  410 (571)
T 2rgh_A          403 GALRLIRQ  410 (571)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.96  E-value=1.9e-27  Score=232.16  Aligned_cols=342  Identities=18%  Similarity=0.154  Sum_probs=208.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC--CCChHHHHHHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP--EDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+++..+  ++|..+++.++....  ......+..+.......+.+...
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~--GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~ap   94 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFAS--GTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAP   94 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTC--SGGGSSCCEECC---------------CHHHHHHHHHHCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC--CcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhCc
Confidence            46999999999999999999999999999999997664  445555555543221  11111222222222222222211


Q ss_pred             C---ee--EEe---eceeeeCC-CChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHH
Q 015088           84 Y---KV--YFK---AHQFDMGP-SENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTK  154 (413)
Q Consensus        84 ~---~~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (413)
                      .   ..  ...   .+.+.... .....+....... ......+.++.+++.+.+|. +.......+++.+ ++++++.+
T Consensus        95 ~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~-~~~~~~~~l~~~~~~~~~P~-l~~~~~~gg~~~~-dg~vd~~~  171 (561)
T 3da1_A           95 HVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADV-RKDERRYMLNEKQTLEKEPL-LRKENLKGGGIYV-EYRTDDAR  171 (561)
T ss_dssp             TTCEEEEEEEEECC----------------------------CEEECHHHHHHHCTT-SCCTTCCEEEEEE-EEECCHHH
T ss_pred             hhccccceeEeecCCccHHHHHHHhHHHHHHHhhcc-cCCCCcEEECHHHHHHhCcc-CChhhceeEEEec-CceEcHHH
Confidence            1   10  010   00110000 0000111111111 11334678899999999887 5433344455555 45999999


Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCChHHhhhhhcCCc--cce
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAWVGKLVKRITGLE--LPI  227 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~--~~~  227 (413)
                      ++..+.+.+++.|++++++++|+++..  ++ +..+.|++.   +|  .+++|+.||+|+|+|+..+.+.+ +..  .++
T Consensus       172 l~~~L~~~a~~~G~~i~~~~~V~~l~~--~~-g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~-g~~~~~~v  247 (561)
T 3da1_A          172 LTLEIMKEAVARGAVALNYMKVESFIY--DQ-GKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKD-RSKHGKYL  247 (561)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEE--ET-TEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTT-TCCCSSEE
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEE--cC-CeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhc-CCCCCceE
Confidence            999999999999999999999999988  63 234455543   23  37999999999999999888876 654  689


Q ss_pred             eEEEEEEEEEEecCCCCCccccCCCCCeEEE--cCCCceEecCCCCCCCcEEEecCCC-CCCCCCCCCCCCchhHHHHHH
Q 015088          228 QAVETTVCYWRIKEGNEADYAVGGDFPSFAS--YGDPYIYGTPSLEYPGLIKIALHGG-YPCDPDRRPWGPGLLLDSLKE  304 (413)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~  304 (413)
                      .+.+|+++.+..+...       ...+.+..  .++..+|++|. +  |.+.+|+++. +..++.....+ .+..+.|++
T Consensus       248 ~p~kG~~lvl~~~~~~-------~~~~~~~~~~~dgr~v~~iP~-~--g~~~iGtT~~~~~~~~~~~~~t-~~~i~~ll~  316 (561)
T 3da1_A          248 KLSKGVHLVVDQSRFP-------LRQAVYFDTESDGRMIFAIPR-E--GKTYIGTTDTFYDKDIASPRMT-VEDRDYILA  316 (561)
T ss_dssp             EEEEEEEEEEEGGGSC-------CSSEEEECCSSSCCCEEEEEE-T--TEEEECCCCEEECSCTTCCCCC-HHHHHHHHH
T ss_pred             EeccEEEEEECCccCC-------CceEEEeccCCCCcEEEEEec-C--CCEEEcCCCCccCCCcCCCCCC-HHHHHHHHH
Confidence            9999999887633211       11233322  23445788888 2  4555555432 11122211112 237889999


Q ss_pred             HHHhhcCCCC--CCCCCeeeceeeeeecCCC---------CeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHH
Q 015088          305 WIQGRFAGRV--DSNGPVATQLCMYSITPDE---------DFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLV  373 (413)
Q Consensus       305 ~~~~~~p~~~--~~~~~~~~~~g~~~~t~d~---------~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i  373 (413)
                      .+++++|.+.  . ..++..|+|+||.+.|.         ..+|...+    ++++.+.|  |. ++.++.+|+.+++++
T Consensus       317 ~~~~~~P~l~~~~-~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~~~----~gli~i~G--gk-~Tt~r~mAe~~~d~~  388 (561)
T 3da1_A          317 AANYMFPSLRLTA-DDVESSWAGLRPLIHEEGKKASEISRKDEIFFSD----SGLISIAG--GK-LTGYRKMAERTVDAV  388 (561)
T ss_dssp             HHHHHCTTCCCCT-TTEEEEEEEEEEEEEC-----------CCEEECS----SCCEEECC--CC-STTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCCh-hhEEEEeEEeccccCCCCCCccccccceEEEecC----CCeEEEeC--Ch-hhhHHHHHHHHHHHH
Confidence            9999999875  3 25788999999987551         23333322    67777765  34 999999999999988


Q ss_pred             hc
Q 015088          374 LS  375 (413)
Q Consensus       374 ~~  375 (413)
                      .+
T Consensus       389 ~~  390 (561)
T 3da1_A          389 AQ  390 (561)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.76  E-value=1.6e-16  Score=155.01  Aligned_cols=223  Identities=14%  Similarity=0.018  Sum_probs=119.9

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCC----eEEEEcCCC---cEEEcCEEEEcCCCChHHhhhhh
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKG----GVTVVTSNG---EKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~----~~~v~~~~g---~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..++...+...|.+.+++.|++++++++|++++.  +  ++    ++.+++.++   .+++||+||.|+|.+| .+.+.+
T Consensus       115 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~--~--~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S-~vR~~l  189 (535)
T 3ihg_A          115 AMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQ--H--DDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS-LVRESL  189 (535)
T ss_dssp             BCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE--E--CGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC-HHHHHT
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--C--CCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc-hHHHHc
Confidence            4566788999999999999999999999999988  6  34    677776655   5799999999999998 455555


Q ss_pred             cCCccceeEEEEEEEEEEecCCCCCccccCCCC-CeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhH
Q 015088          221 TGLELPIQAVETTVCYWRIKEGNEADYAVGGDF-PSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLL  299 (413)
Q Consensus       221 ~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (413)
                       |+..+..+.....+.+....... .+...... -.+........++.|......+......     +++..+....-..
T Consensus       190 -gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~  262 (535)
T 3ihg_A          190 -GIGRYGHGTLTHMVGVIFDADLS-GIMEPGTTGWYYLHHPEFKGTFGPTDRPDRHTLFVEY-----DPDEGERPEDFTP  262 (535)
T ss_dssp             -TCCEEEEEEEEEEEEEEEECCGG-GTSCTTCCEEEEEECSSCEEEEEECSSTTEEEEEEEE-----CTTTTCCGGGCCH
T ss_pred             -CCCcCCCCccceEEEEEEeccCh-hhccCCceEEEEEECCCceEEEEEecCCCEEEEEEee-----CccccCccccCCH
Confidence             77666555544444333323211 11111101 1122222223344444332222221111     1111000001024


Q ss_pred             HHHHHHHHhhcCCCCCCCCCeeeceeee--------eecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHH
Q 015088          300 DSLKEWIQGRFAGRVDSNGPVATQLCMY--------SITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILAD  371 (413)
Q Consensus       300 ~~l~~~~~~~~p~~~~~~~~~~~~~g~~--------~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~  371 (413)
                      +.+.+.+.+.++....  .....+....        .+..++..++|..       .+...-++|.|+.++..-|..|+.
T Consensus       263 e~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~grv~LvGDA-------AH~~~P~~GqG~n~ai~DA~~La~  333 (535)
T 3ihg_A          263 QRCVELIGLALDAPEV--KPELVDIQGWEMAARIAERWREGRVFLAGDA-------AKVTPPTGGMSGNAAVADGFDLAW  333 (535)
T ss_dssp             HHHHHHHHHHHTCSSC--CCEEEEEEEEEEEEEEESCSEETTEEECTTT-------TEECCSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCC--ceeEEEeeEeeeeEEEECccccCCEEEEecc-------cccCCCccCCccccccccHHHHHH
Confidence            4566666666653221  1111122211        1233455555543       456667788888877766666655


Q ss_pred             HHh---cCCCCcccccccccccc
Q 015088          372 LVL---SGEAQGVELQHFRISRF  391 (413)
Q Consensus       372 ~i~---~g~~~~~~~~~~~~~R~  391 (413)
                      .|.   ++......++.|+-+|.
T Consensus       334 ~La~~l~g~~~~~lL~~Ye~eR~  356 (535)
T 3ihg_A          334 KLAAVLQGQAGAGLLDTYEDERK  356 (535)
T ss_dssp             HHHHHHTTSSCTTHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHhhHHHHH
Confidence            443   24433445666665554

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.75  E-value=2e-17  Score=156.74  Aligned_cols=209  Identities=11%  Similarity=0.014  Sum_probs=119.0

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      ..+++..+.+.|.+.+++.|++++++++|+++..  ++++..+.+.+.+|+  +++||.||.|+|.++ .+.+.+ +...
T Consensus       101 ~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~--~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s-~l~~~~-g~~~  176 (421)
T 3nix_A          101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKF--FGTDSVTTIEDINGNKREIEARFIIDASGYGR-VIPRMF-GLDK  176 (421)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ETTEEEEEEEETTSCEEEEEEEEEEECCGGGC-HHHHHT-TCEE
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEEcCCCCEEEEEcCEEEECCCCch-hhHHhc-CCCC
Confidence            5678899999999999999999999999999988  633334677778887  799999999999987 444444 7666


Q ss_pred             ceeEEEEEEEEEEecCCCC-CccccCCCCCeEEE--cCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088          226 PIQAVETTVCYWRIKEGNE-ADYAVGGDFPSFAS--YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      +........+...+..... ..+.. ........  ....++|.+|..+  +.+.++.......... ..   . ..+.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~P~~~--~~~~vg~~~~~~~~~~-~~---~-~~~~~  248 (421)
T 3nix_A          177 PSGFESRRTLFTHIKDVKRPVAAEM-EGNRITAVVHKPKVWIWVIPFSN--GNTSVGFVGEPSYFDE-YT---G-TPEER  248 (421)
T ss_dssp             CCSSCCCEEEEEEEECTTCCC-----CCSEEEEEEEETTEEEEEEECTT--SEEEEEEEECHHHHTT-SC---S-CHHHH
T ss_pred             CCcCCCcEEEEEEECCCcCCCccCC-CCeEEEEEeCCCCEEEEEEEECC--CCEEEEEEecHHHhhh-cC---C-CHHHH
Confidence            5544444444444333211 11111 11222221  2334567777654  3332222110000000 00   0 12233


Q ss_pred             HHHHHhhcCCCC----CC--CCCeeecee----eeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHH
Q 015088          303 KEWIQGRFAGRV----DS--NGPVATQLC----MYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       303 ~~~~~~~~p~~~----~~--~~~~~~~~g----~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~  372 (413)
                      .+.+.+..|.+.    +.  ...+..+.+    ...+..++.+++|...+       ....+.|.|+.+|...|..+|+.
T Consensus       249 l~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~-------~~~P~~G~G~~~A~~~a~~la~~  321 (421)
T 3nix_A          249 MRAMIANEGHIAERFKSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATE-------FLDPIFSSGATFAMESGSKGGKL  321 (421)
T ss_dssp             HHHHHHTCTTTHHHHTTCCBSSCCEEEECCCBEESCSEETTEEECGGGTC-------BCCSTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHhcCccccCceeecccceeeeeeccCCEEEeccccc-------ccCCcccccHHHHHHHHHHHHHH
Confidence            334334455432    11  011122211    22345577788886543       34567899999999999999988


Q ss_pred             Hhc
Q 015088          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      |..
T Consensus       322 l~~  324 (421)
T 3nix_A          322 AVQ  324 (421)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.70  E-value=4.8e-16  Score=149.36  Aligned_cols=207  Identities=14%  Similarity=0.063  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCC-----ccc
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGL-----ELP  226 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~-----~~~  226 (413)
                      ..+.+.|.+.+.+  ++|+++++|++|..  +  ++++.|++.+|++++||+||+|++.+.. .++... ..     .++
T Consensus       235 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~--~--~~~~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~~~-~~~~~~~~~~  307 (470)
T 3i6d_A          235 QTLVEEIEKQLKL--TKVYKGTKVTKLSH--S--GSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSEL-PAISHLKNMH  307 (470)
T ss_dssp             HHHHHHHHHTCCS--EEEECSCCEEEEEE--C--SSSEEEEESSSCEEEESEEEECSCHHHHHHHTTTS-TTHHHHHTCE
T ss_pred             HHHHHHHHHhcCC--CEEEeCCceEEEEE--c--CCeEEEEECCCCEEECCEEEECCCHHHHHHHcCCc-hhhHHHhcCC
Confidence            3455555443322  69999999999988  6  4568999999977999999999998652 332211 11     123


Q ss_pred             eeEEEEEEEEEEecCC-CCCccccCCCCCeEEEcCCC-ce----Ee---cC--CCCCCCcEEEecCCCCCCCCCCCCCCC
Q 015088          227 IQAVETTVCYWRIKEG-NEADYAVGGDFPSFASYGDP-YI----YG---TP--SLEYPGLIKIALHGGYPCDPDRRPWGP  295 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~----y~---~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (413)
                      ..++....+.++  .. .....   ..+-.+...... .+    +.   .|  .++... +..+...+ .........+.
T Consensus       308 ~~~~~~v~l~~~--~~~~~~~~---~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~-~l~~~~~~-~~~~~~~~~~~  380 (470)
T 3i6d_A          308 STSVANVALGFP--EGSVQMEH---EGTGFVISRNSDFAITACTWTNKKWPHAAPEGKT-LLRAYVGK-AGDESIVDLSD  380 (470)
T ss_dssp             EEEEEEEEEEES--STTCCCSS---CSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCE-EEEEEECC-SSCCGGGTSCH
T ss_pred             CCceEEEEEEEC--chhcCCCC---CCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCE-EEEEEECC-CCCccccCCCH
Confidence            334333333332  21 11110   001111111111 00    00   01  111112 22121111 11111112223


Q ss_pred             chhHHHHHHHHHhhcCCCCCCCC--Ceeeceeeee-ecCCCCeEecCCCC---CCCCCEEEEeC-CCCCCCccchHHHHH
Q 015088          296 GLLLDSLKEWIQGRFAGRVDSNG--PVATQLCMYS-ITPDEDFVIDFLGG---EFGEDVVVAGG-FSGHGFKMAPAVGRI  368 (413)
Q Consensus       296 ~~~~~~l~~~~~~~~p~~~~~~~--~~~~~~g~~~-~t~d~~p~ig~~~~---~~~~~~~~~~G-~~~~G~~~a~~~a~~  368 (413)
                      ++..+.+++.+.+++|...+. .  .+..|..-.| ++++..+.+.....   .+.++||+++. ++|.|+..+...|+.
T Consensus       381 ~~~~~~~~~~l~~~~g~~~~p-~~~~~~~w~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~gv~~a~~sG~~  459 (470)
T 3i6d_A          381 NDIINIVLEDLKKVMNINGEP-EMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFEGVGIPDCIDQGKA  459 (470)
T ss_dssp             HHHHHHHHHHHGGGSCCCSCC-SEEEEEEEEEEEEECBTTHHHHHHHHHHHHHHHSTTEEECSTTTSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCc-eEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhhCCCEEEEeecCCCCCHHHHHHHHHH
Confidence            347788888899999864421 1  2345665444 55554322211100   01168998888 677788889999999


Q ss_pred             HHHHHh
Q 015088          369 LADLVL  374 (413)
Q Consensus       369 la~~i~  374 (413)
                      +|+.|+
T Consensus       460 aA~~i~  465 (470)
T 3i6d_A          460 AVSDAL  465 (470)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998886

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.69  E-value=2.4e-16  Score=153.77  Aligned_cols=221  Identities=13%  Similarity=0.068  Sum_probs=119.9

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc--CCC-cEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT--SNG-EKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--~~g-~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      ..++...+.+.|.+.+++.|++|+++++|++++.  +  ++.+.|++  .+| ++++||+||.|+|.+| .+-+.+ |+.
T Consensus       143 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~--~--~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S-~vR~~l-Gi~  216 (570)
T 3fmw_A          143 GLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQ--D--AEAVEVTVAGPSGPYPVRARYGVGCDGGRS-TVRRLA-ADR  216 (570)
T ss_dssp             BCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCB--C--SSCEEEEEEETTEEEEEEESEEEECSCSSC-HHHHHT-TCC
T ss_pred             EEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--c--CCeEEEEEEeCCCcEEEEeCEEEEcCCCCc-hHHHHc-CCC
Confidence            4577888999999999989999999999999987  6  35566665  778 5799999999999998 444444 777


Q ss_pred             cceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEe-cCCCCCCC-cEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088          225 LPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYG-TPSLEYPG-LIKIALHGGYPCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                      .+..+.....+...+...... . .   +. +.......+++ .|..+..- .+.+......   +.  ........+.+
T Consensus       217 ~~~~~~~~~~~~~~v~~~~~~-~-~---~~-~~~~~~G~~~~~~P~~~g~~~~i~~~~~~~~---~~--~~~~~~~~~~~  285 (570)
T 3fmw_A          217 FPGTEATVRALIGYVTTPERE-V-P---RR-WERTPDGILVLAFPPEGGLGPGWSSSSTGHS---PA--ADEGPVTLEDL  285 (570)
T ss_dssp             CCCCCCCEEEEEEECCCCSCS-S-C---CC-CCCCCSSCEEECCCC------CEEEEEESCC----------CCCCHHHH
T ss_pred             CccceeeeEEEEEEEEecCCC-c-c---eE-EEecCCEEEEEEeecCCCeEEEEEEEeCCCC---cc--ccccCCCHHHH
Confidence            665555555444443221111 0 0   00 00111222333 46544211 1222211110   00  00011145677


Q ss_pred             HHHHHhhcCCCCCCCCCeeeceeeee--------ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHh
Q 015088          303 KEWIQGRFAGRVDSNGPVATQLCMYS--------ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVL  374 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~  374 (413)
                      .+.+.+.++....... ...|...++        +..++..++|.       -.+...-++|+|+.++..-|..|+..|.
T Consensus       286 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~grv~LvGD-------AAH~~~P~~GqG~n~gl~DA~~La~~La  357 (570)
T 3fmw_A          286 GAAVARVRGTPLTLTE-PVSWLSRFGDASRQAKRYRSGRVLLAGD-------AAHVHFPIGGQGLNTGLQDAVNLGWKLA  357 (570)
T ss_dssp             HHHTTSSSSCCCCCCS-CCEEEEEECCCCEECSCSEETTEEECGG-------GTEECCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccce-eeeeeEEeecccccccccccCCEEEEEe-------cceecCCCcCcCHhHHHHHHHHHHHHHH
Confidence            7777777774432211 111433332        12233344443       3355566778888887766666555443


Q ss_pred             ---cCCCCcccccccccccccc
Q 015088          375 ---SGEAQGVELQHFRISRFKE  393 (413)
Q Consensus       375 ---~g~~~~~~~~~~~~~R~~~  393 (413)
                         .+......++.|.-+|...
T Consensus       358 ~~~~g~~~~~lL~~Ye~eR~~~  379 (570)
T 3fmw_A          358 ARVRGWGSEELLDTYHDERHPV  379 (570)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCcHHHHHHHHHHHHHH
Confidence               2433344467776666443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.68  E-value=3.3e-16  Score=153.10  Aligned_cols=210  Identities=11%  Similarity=0.032  Sum_probs=115.3

Q ss_pred             CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CC--cEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NG--EKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g--~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      ...++...+.+.|.+.+++.|++++++++|+++..  ++ +..+.|.+. +|  .+++||.||.|+|.++. +.+.+ +.
T Consensus       122 ~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~--~~-g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~-lr~~l-g~  196 (591)
T 3i3l_A          122 AVQVKREEFDKLLLDEARSRGITVHEETPVTDVDL--SD-PDRVVLTVRRGGESVTVESDFVIDAGGSGGP-ISRKL-GV  196 (591)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEC--CS-TTCEEEEEEETTEEEEEEESEEEECCGGGCH-HHHHH-TC
T ss_pred             eEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cC-CCEEEEEEecCCceEEEEcCEEEECCCCcch-hHHHc-CC
Confidence            45678889999999999999999999999999987  52 356777765 66  47999999999999873 44444 65


Q ss_pred             ccceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHH
Q 015088          224 ELPIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLK  303 (413)
Q Consensus       224 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (413)
                      ..+....+...++........... +..............+|..|..+  +.+.++...    +++..+.......+.+.
T Consensus       197 ~~~~~~~~~~av~~~~~~~~~~~~-~~~~~~~~~~~~~G~~w~iPl~~--~~~sv~~~~----~~~~~~~l~~~~~~~~~  269 (591)
T 3i3l_A          197 RQYDEFYRNFAVWSYFKLKDPFEG-DLKGTTYSITFEDGWVWMIPIKD--DLYSVGLVV----DRSKSAEVREQGADAFY  269 (591)
T ss_dssp             EEEEEEEEEEEEEEEEECCCSCCS-TTTTCEEEEEETTEEEEEEECSS--SEEEEEEEE----EGGGHHHHHHHCHHHHH
T ss_pred             CCCCccccceEEEEEEecCccccC-CCCCceEEEEcCCcEEEEEECCC--CeEEEEEEc----CHHHHhhhccCCHHHHH
Confidence            443333333333322211110000 00001112222344567777653  333222210    00000000000112233


Q ss_pred             HHHHhhcCCC----CC-----CCCCeeecee-eeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHH
Q 015088          304 EWIQGRFAGR----VD-----SNGPVATQLC-MYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLV  373 (413)
Q Consensus       304 ~~~~~~~p~~----~~-----~~~~~~~~~g-~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i  373 (413)
                      +.+...+|.+    ..     ....+..|.+ ...+..++..+||...+       ....+.|.|+.+|...|..+|+.|
T Consensus       270 ~~l~~~~p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rvvLIGDAAh-------~~~Pl~GqGinlAl~dA~~LA~~L  342 (591)
T 3i3l_A          270 SSTLAKCAKAMDILGGAEQVDEVRIVQDWSYDTEVFSADRFFLCGDAAC-------FTDPLFSQGVHLASQSAVSAAAAI  342 (591)
T ss_dssp             HHHHTTCHHHHHHHTTCEECSCCEEEEEEEEEESCSEETTEEECGGGTC-------BCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcCccccCceEecccccchhhcccCCEEEEccccc-------cCCCcccccHHHHHHHHHHHHHHH
Confidence            3332222221    10     0122334554 23455677788886543       345678899999999988888877


Q ss_pred             hc
Q 015088          374 LS  375 (413)
Q Consensus       374 ~~  375 (413)
                      ..
T Consensus       343 ~~  344 (591)
T 3i3l_A          343 DR  344 (591)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.67  E-value=9.3e-15  Score=140.71  Aligned_cols=304  Identities=16%  Similarity=0.138  Sum_probs=158.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +.++||+|||||++|+++|+.|+++|++|+|||+.......+.    +..+            ...+++.++++    |+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r----~~~l------------~~~~~~~l~~l----Gl   69 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR----GLGF------------TARTMEVFDQR----GI   69 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCC----SEEE------------CHHHHHHHHHT----TC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCc----eeEE------------CHHHHHHHHHC----CC
Confidence            4579999999999999999999999999999999865532111    1111            11222322221    21


Q ss_pred             ee-EE---eeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           85 KV-YF---KAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        85 ~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .- +.   ......+                 .+..   ++...    .      ....     +....++...+.+.|.
T Consensus        70 ~~~~~~~~~~~~~~~-----------------~~~~---~~~~~----~------~~~~-----~~~~~i~~~~l~~~L~  114 (499)
T 2qa2_A           70 LPAFGPVETSTQGHF-----------------GGRP---VDFGV----L------EGAH-----YGVKAVPQSTTESVLE  114 (499)
T ss_dssp             GGGGCSCCEESEEEE-----------------TTEE---EEGGG----S------TTCC-----CEEEEEEHHHHHHHHH
T ss_pred             HHHHHhcccccccee-----------------ccee---ccccc----C------CCCC-----CceEecCHHHHHHHHH
Confidence            00 00   0000000                 0000   00000    0      0000     1123456678899999


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc---EEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEE
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE---KFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYW  237 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~---~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~  237 (413)
                      +.+.+.|++|+++++|++++.  +  ++.+.+++.++.   +++||+||.|+|.+|. +-+.+ |+..+-.......+..
T Consensus       115 ~~~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~l-g~~~~~~~~~~~~~~~  188 (499)
T 2qa2_A          115 EWALGRGAELLRGHTVRALTD--E--GDHVVVEVEGPDGPRSLTTRYVVGCDGGRST-VRKAA-GFDFPGTSASREMFLA  188 (499)
T ss_dssp             HHHHHTTCEEEESCEEEEEEE--C--SSCEEEEEECSSCEEEEEEEEEEECCCTTCH-HHHHT-TCCCCEECCCCCEEEE
T ss_pred             HHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEEEcCCCcEEEEeCEEEEccCcccH-HHHHc-CCCCCCCCCccEEEEE
Confidence            999999999999999999988  6  356777766653   6999999999999984 43444 6655443322222222


Q ss_pred             EecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEec--CCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCC
Q 015088          238 RIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIAL--HGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVD  315 (413)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                      .+....   . + ..+ .+....+..+++.|..+  +.+.+..  .....   .  +.......+.+.+.+.+.++....
T Consensus       189 ~v~~~~---~-~-~~~-~~~~~~~g~~~~~P~~~--g~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~~~~~~~  255 (499)
T 2qa2_A          189 DIRGCE---I-T-PRP-IGETVPLGMVMSAPLGD--GVDRIIVCERGAPA---R--RRTGPPPYQEVAAAWQRLTGQDIS  255 (499)
T ss_dssp             EEESCC---C-C-CEE-EEEEETTEEEEEEECSS--SCEEEEEEETTCCC---C--CCSSSCCHHHHHHHHHHHHSCCCT
T ss_pred             EEEECC---C-C-cce-EEEECCCeEEEEEEcCC--CEEEEEEEecCCCC---c--cccCCCCHHHHHHHHHHHhCCCCC
Confidence            221110   0 1 001 11222233456666643  3332221  11110   0  000111355666777777663221


Q ss_pred             CCCCeeeceeeee--------ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHH----HHHHhcCCCCcccc
Q 015088          316 SNGPVATQLCMYS--------ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRIL----ADLVLSGEAQGVEL  383 (413)
Q Consensus       316 ~~~~~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~l----a~~i~~g~~~~~~~  383 (413)
                      . ... .|...++        +..++..++|.       -.+...-++|.|+.++..-|..|    +..+. |......+
T Consensus       256 ~-~~~-~~~~~~~~~~~~a~~~~~grv~L~GD-------AAH~~~P~~GqG~n~gi~DA~~La~~La~~l~-g~~~~~~L  325 (499)
T 2qa2_A          256 H-GEP-VWVSAFGDPARQVSAYRRGRVLLAGD-------SAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVS-GRAPAGLL  325 (499)
T ss_dssp             T-CEE-EEEEEECCCEEECSCSEETTEEECGG-------GTEEECCCSSCHHHHHHHHHHHHHHHHHHHHT-TSSCTHHH
T ss_pred             c-cce-eEEEEEeCCcEEcccccCCCEEEEec-------ccccCCCccccchhhhHHHHHHHHHHHHHHHc-CCCChHHH
Confidence            1 111 2332221        12233444443       34566778899988877666555    44443 54434457


Q ss_pred             ccccccccc
Q 015088          384 QHFRISRFK  392 (413)
Q Consensus       384 ~~~~~~R~~  392 (413)
                      +.|+-+|..
T Consensus       326 ~~Ye~eR~~  334 (499)
T 2qa2_A          326 DTYHEERHP  334 (499)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.67  E-value=1.2e-15  Score=144.70  Aligned_cols=60  Identities=15%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChH-Hhh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVG-KLV  217 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~-~l~  217 (413)
                      ..+.+.|.+.++++|++|+++++|++|..  +  ++.+. |.++ |++++||.||+|++.+.. .++
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~--~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILI--E--NGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--E--TTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEE--E--CCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            67889999999999999999999999988  6  34444 6665 667999999999999764 444

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.67  E-value=5.9e-16  Score=145.83  Aligned_cols=161  Identities=16%  Similarity=0.146  Sum_probs=94.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+.......+...    .+.     +.... .......+..+... +..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~----~l~-----~~~~~-~l~~lg~~~~~~~~-~~~   90 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAI----SVW-----PNGVK-CMAHLGMGDIMETF-GGP   90 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEE----EEC-----HHHHH-HHHHTTCHHHHHHH-SCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeE----EEC-----HHHHH-HHHHCCCHHHHHhh-cCC
Confidence            46899999999999999999999999999999986542211110    000     00000 00111112222221 100


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      .    ..+.+....             .+.....++..+.....+              .....++...+.+.|.+.+.+
T Consensus        91 ~----~~~~~~~~~-------------~g~~~~~~~~~~~~~~~~--------------~~~~~i~r~~l~~~L~~~~~~  139 (407)
T 3rp8_A           91 L----RRMAYRDFR-------------SGENMTQFSLAPLIERTG--------------SRPCPVSRAELQREMLDYWGR  139 (407)
T ss_dssp             C----CEEEEEETT-------------TCCEEEEEECHHHHHHHS--------------SCCEEEEHHHHHHHHHHHHCG
T ss_pred             C----cceEEEECC-------------CCCEeEEecchhhhhhcC--------------CceEEEEHHHHHHHHHHhCCc
Confidence            0    000000000             000001111111111111              123456778888899888876


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                        ++|+++++|++++.  +  ++.+.|++.+|++++||.||.|+|.+|.
T Consensus       140 --~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~a~~vV~AdG~~S~  182 (407)
T 3rp8_A          140 --DSVQFGKRVTRCEE--D--ADGVTVWFTDGSSASGDLLIAADGSHSA  182 (407)
T ss_dssp             --GGEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCCTTCS
T ss_pred             --CEEEECCEEEEEEe--c--CCcEEEEEcCCCEEeeCEEEECCCcChH
Confidence              89999999999988  6  4678899999988999999999999874

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.67  E-value=1.1e-14  Score=140.17  Aligned_cols=310  Identities=16%  Similarity=0.163  Sum_probs=157.0

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIG   83 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (413)
                      ++.++||+|||||++|+++|+.|+++|++|+|||+.......+..    ..+            ...+++.++.    .|
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~----~~l------------~~~~~~~l~~----lG   67 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRG----LGF------------TARTMEVFDQ----RG   67 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCS----EEE------------CHHHHHHHHT----TT
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCc----ceE------------CHHHHHHHHH----CC
Confidence            456799999999999999999999999999999998655321111    111            1122222222    11


Q ss_pred             Cee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           84 YKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      +.- +...   ..  .....+         .+..   ++...    .      ....     +....++...+.+.|.+.
T Consensus        68 l~~~~~~~---~~--~~~~~~---------~~~~---~~~~~----~------~~~~-----~~~~~i~~~~l~~~L~~~  115 (500)
T 2qa1_A           68 ILPRFGEV---ET--STQGHF---------GGLP---IDFGV----L------EGAW-----QAAKTVPQSVTETHLEQW  115 (500)
T ss_dssp             CGGGGCSC---CB--CCEEEE---------TTEE---EEGGG----S------TTGG-----GCEEEEEHHHHHHHHHHH
T ss_pred             CHHHHHhc---cc--cccccc---------ccee---ccccc----C------CCCC-----CceeecCHHHHHHHHHHH
Confidence            100 0000   00  000000         0000   00000    0      0000     112345567888999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc---EEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEe
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE---KFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRI  239 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~---~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~  239 (413)
                      +++.|++++++++|++++.  +  ++.+.+++.++.   +++||+||.|+|.+|. +-+.+ |+..+-.......+...+
T Consensus       116 ~~~~gv~v~~~~~v~~i~~--~--~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~-VR~~l-g~~~~~~~~~~~~~~~~~  189 (500)
T 2qa1_A          116 ATGLGADIRRGHEVLSLTD--D--GAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS-VRKAA-GFDFPGTAATMEMYLADI  189 (500)
T ss_dssp             HHHTTCEEEETCEEEEEEE--E--TTEEEEEEEETTEEEEEEESEEEECCCTTCH-HHHHT-TCCCCEECCCCEEEEEEE
T ss_pred             HHHCCCEEECCcEEEEEEE--c--CCeEEEEEEcCCCCEEEEeCEEEECCCcchH-HHHHc-CCCcCCCccceEEEEEEE
Confidence            9999999999999999988  6  456777766553   6999999999999984 44444 665554332222222222


Q ss_pred             cCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCC
Q 015088          240 KEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGP  319 (413)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~  319 (413)
                      ....   . + ..+ .+....+..+++.|..+  +.+.+.... .  ++...+.......+.+.+.+.+.++..... ..
T Consensus       190 ~~~~---~-~-~~~-~~~~~~~g~~~~~p~~~--g~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~  257 (500)
T 2qa1_A          190 KGVE---L-Q-PRM-IGETLPGGMVMVGPLPG--GITRIIVCE-R--GTPPQRRETPPSWHEVADAWKRLTGDDIAH-AE  257 (500)
T ss_dssp             ESCC---C-C-CEE-EEEEETTEEEEEEEETT--TEEEEEEEE-T--TCCC-----CCCHHHHHHHHHHHHSCCCTT-SE
T ss_pred             EeCC---C-C-Cce-EEEECCCcEEEEEEcCC--CEEEEEEEc-C--CCCCccccCCCCHHHHHHHHHHhcCCCCCc-cc
Confidence            2110   0 1 001 11122233455556543  333222110 0  000000000113456666777766532211 11


Q ss_pred             eeeceeeee--------ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHH----HHHHhcCCCCcccccccc
Q 015088          320 VATQLCMYS--------ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRIL----ADLVLSGEAQGVELQHFR  387 (413)
Q Consensus       320 ~~~~~g~~~--------~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~l----a~~i~~g~~~~~~~~~~~  387 (413)
                      . .|...++        +..++..++|.       -.+...-++|.|+.++..-|..|    +..+. |......++.|+
T Consensus       258 ~-~~~~~~~~~~~~a~~~~~grv~L~GD-------AAH~~~P~~GqG~n~gi~DA~~La~~La~~~~-g~~~~~~L~~Y~  328 (500)
T 2qa1_A          258 P-VWVSAFGNATRQVTEYRRGRVILAGD-------SAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVN-GTATEELLDSYH  328 (500)
T ss_dssp             E-EEEEEEECCEEECSCSEETTEEECGG-------GTEECCCCSSCHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHH
T ss_pred             e-eEEEEeccCcEEccccccCCEEEEEc-------cccCCCCccccchhhhHHHHHHHHHHHHHHHc-CCCChHHHHHHH
Confidence            1 2322221        12233445443       34566677888888877655554    44443 544344577777


Q ss_pred             ccccc
Q 015088          388 ISRFK  392 (413)
Q Consensus       388 ~~R~~  392 (413)
                      -+|..
T Consensus       329 ~eR~~  333 (500)
T 2qa1_A          329 SERHA  333 (500)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.66  E-value=1.9e-16  Score=148.59  Aligned_cols=72  Identities=19%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCC--cEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNG--EKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      .++...+.+.|.+.+.+.|++++++++|+++..  +++ ....+.. .++  .+++||.||.|+|.+|. +.+.+ +...
T Consensus        98 ~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~--~~~-~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~-vr~~~-g~~~  172 (397)
T 3oz2_A           98 VLERDKFDKHLAALAAKAGADVWVKSPALGVIK--ENG-KVAGAKIRHNNEIVDVRAKMVIAADGFESE-FGRWA-GLKS  172 (397)
T ss_dssp             EECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE--ETT-EEEEEEEEETTEEEEEEEEEEEECCCTTCH-HHHHH-TCGG
T ss_pred             EEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee--ccc-eeeeeeecccccceEEEEeEEEeCCccccH-HHHHc-CCCc
Confidence            467788889999999999999999999999887  632 3333322 233  26899999999999873 33333 5443

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.65  E-value=7.6e-16  Score=149.42  Aligned_cols=215  Identities=10%  Similarity=0.063  Sum_probs=122.8

Q ss_pred             CceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc-
Q 015088          147 GGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL-  225 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~-  225 (413)
                      ...+++..+.+.|.+.+++.|++++++ +|+++..  ++++..+.|++.+|++++||.||.|+|.++.-+...+ +... 
T Consensus       167 ~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~--~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~-g~~~~  242 (511)
T 2weu_A          167 AYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQ--DERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTL-GGRFQ  242 (511)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEE--CTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCT-CCCEE
T ss_pred             eEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEE--cCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHh-CCCCc
Confidence            456888999999999999999999999 9999987  6333457788888877999999999999885322222 4432 


Q ss_pred             ---ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHH
Q 015088          226 ---PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSL  302 (413)
Q Consensus       226 ---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (413)
                         +..+....+ .+...........+   ...........+|..|..+  . ..++...    .++  ..+.++..+.+
T Consensus       243 ~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~P~~~--~-~~~g~~~----~~~--~~~~~~~~~~l  309 (511)
T 2weu_A          243 SFSDVLPNNRAV-ALRVPRENDEDMRP---YTTATAMSAGWMWTIPLFK--R-DGNGYVY----SDE--FISPEEAEREL  309 (511)
T ss_dssp             ECTTTCCCCEEE-EEEEECSSGGGCCS---SEEEEEETTEEEEEEECSS--E-EEEEEEE----CTT--TSCHHHHHHHH
T ss_pred             cccccCcccceE-EEEeccCCCCCCCc---ceeceecCCCcEEEEECCC--c-eEEEEEE----CCC--CCCHHHHHHHH
Confidence               112222222 22221111100111   1111122234567777654  2 2222110    010  11112233444


Q ss_pred             HHHHHhhcCCCCCCCCCeeeceeeeee-cCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcc
Q 015088          303 KEWIQGRFAGRVDSNGPVATQLCMYSI-TPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGV  381 (413)
Q Consensus       303 ~~~~~~~~p~~~~~~~~~~~~~g~~~~-t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~  381 (413)
                      .+.+ ...|.+.+. ..+..|.+.++. ..++.++||...       .....+.|.|+.+|...|..||+.+.++.....
T Consensus       310 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~rv~liGDAA-------h~~~P~~g~G~~~a~~da~~La~~l~~~~~~~~  380 (511)
T 2weu_A          310 RSTV-APGRDDLEA-NHIQMRIGRNERTWINNCVAVGLSA-------AFVEPLESTGIFFIQHAIEQLVKHFPGERWDPV  380 (511)
T ss_dssp             HHHH-CTTCTTSCC-EEEECCCEEESCSEETTEEECGGGT-------EECCGGGCCHHHHHHHHHHHHHHTCCCTTCCHH
T ss_pred             HHHh-Ccccccccc-eeEEeeccccccccCCCEEEEechh-------hccCccccccHHHHHHHHHHHHHHhccCCCCHH
Confidence            4433 223333322 345566776653 347777887653       455678899999999999999999875433222


Q ss_pred             cccccc
Q 015088          382 ELQHFR  387 (413)
Q Consensus       382 ~~~~~~  387 (413)
                      .++.|+
T Consensus       381 ~l~~Y~  386 (511)
T 2weu_A          381 LISAYN  386 (511)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344444

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.63  E-value=1.2e-14  Score=138.61  Aligned_cols=200  Identities=14%  Similarity=0.026  Sum_probs=107.5

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEcC-CCc--EEEcCEEEEcCCCChHHhhhhhcC
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTS-NGE--KFWGKKCVVTAGAWVGKLVKRITG  222 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~-~g~--~i~ad~VV~A~G~~s~~l~~~~~g  222 (413)
                      ..++...+.+.|.+.+.+.|++++++++|+++..  +++ ..  +.+.+. +|+  +++||.||.|+|.++. +.+.+ +
T Consensus        95 ~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~--~~~-~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~-vr~~l-~  169 (453)
T 3atr_A           95 FELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF--EDG-YVKGAVLFNRRTNEELTVYSKVVVEATGYSRS-FRSKL-P  169 (453)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE--ETT-EEEEEEEEETTTTEEEEEECSEEEECCGGGCT-TGGGS-C
T ss_pred             EEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE--ECC-EEEEEEEEEcCCCceEEEEcCEEEECcCCchh-hHHhc-C
Confidence            4577888999999999999999999999999987  622 22  333333 665  7999999999999874 33333 5


Q ss_pred             Cccce----eE---EEEEEEEEEecCCCCCccccCCCCCeEEE----cCCCceEecCCCCCCCcEEEecCCCCCCCCCCC
Q 015088          223 LELPI----QA---VETTVCYWRIKEGNEADYAVGGDFPSFAS----YGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRR  291 (413)
Q Consensus       223 ~~~~~----~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~  291 (413)
                      ...|.    .+   .......+.......   .+  .+..+..    ..+.++++.|..+  +.+.++........+   
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~g~~~~~P~~~--~~~~vg~~~~~~~~~---  239 (453)
T 3atr_A          170 PELPITEDLDDKDADVAYREVLLTKEDIE---DH--DYLRIFIDQETSPGGYWWYFPKGK--NKVNVGLGIQGGMGY---  239 (453)
T ss_dssp             TTSGGGCCCCGGGEEEEEEEEEEESSCCT---TT--TEEEEECCTTTSTTSCEEEEEEET--TEEEEEEEEESSSCC---
T ss_pred             CCCCcccCCCcccceeeeEEEEecCCCcc---CC--CeEEEEECCCCCCCcEEEEEECCC--CeEEEEEEecCCCCC---
Confidence            43321    11   111111222222110   00  1111111    1233456666543  333222110000011   


Q ss_pred             CCCCchhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEE-------eCCCCCCCccchH
Q 015088          292 PWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVA-------GGFSGHGFKMAPA  364 (413)
Q Consensus       292 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~-------~G~~~~G~~~a~~  364 (413)
                       .  + ..+.+.+.+.++.|.+.+. +++..+.+..|..   .|+    +....++++++       ..+.|.|+.+|..
T Consensus       240 -~--~-~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~---~~~----~~~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~  307 (453)
T 3atr_A          240 -P--S-IHEYYKKYLDKYAPDVDKS-KLLVKGGALVPTR---RPL----YTMAWNGIIVIGDSGFTVNPVHGGGKGSAMI  307 (453)
T ss_dssp             -C--C-HHHHHHHHHHHHCTTEEEE-EEEEEEEEEEECS---SCC----SCSEETTEEECGGGGTCSCTTTCCCHHHHHH
T ss_pred             -C--C-HHHHHHHHHHhhhhhcCCC-eEEeccceeccCC---CCC----CceecCCEEEEeCcccCCCCCccccHHHHHH
Confidence             1  1 3455566666666655532 3444555554431   111    11111455433       2378999999999


Q ss_pred             HHHHHHHHHh
Q 015088          365 VGRILADLVL  374 (413)
Q Consensus       365 ~a~~la~~i~  374 (413)
                      .|..+|+.+.
T Consensus       308 da~~la~~l~  317 (453)
T 3atr_A          308 SGYCAAKAIL  317 (453)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988888875

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.63  E-value=4.9e-14  Score=133.33  Aligned_cols=56  Identities=11%  Similarity=0.149  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +..+.+.|.+.+++.|++|+++++|++|..  +  ++.+ |.+ +|++++||.||+|+|.+.
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~--~~~v-V~~-~g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI--E--EKKV-YTR-DNEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET--T--TTEE-EET-TCCEEECSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE--E--CCEE-EEe-CCcEEEeCEEEECCCHHH
Confidence            478899999999999999999999999988  6  4566 654 566799999999999875

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.63  E-value=1.3e-14  Score=139.68  Aligned_cols=204  Identities=15%  Similarity=0.085  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcC------Ccc
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITG------LEL  225 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g------~~~  225 (413)
                      ..+.+.|.+.+.+.|++|+++++|++|..  ++ ++.+.|.+.++ +++||+||+|++++.. .+++....      ..+
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~--~~-~~~~~v~~~~~-~~~ad~vv~a~p~~~~~~ll~~~~~~~~~~l~~~  309 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSL--QA-EGRWKVSLRDS-SLEADHVISAIPASVLSELLPAEAAPLARALSAI  309 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEE--CG-GGCEEEECSSC-EEEESEEEECSCHHHHHHHSCGGGHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEE--cC-CceEEEEECCe-EEEcCEEEECCCHHHHHHhccccCHHHHHHHhcC
Confidence            57889999999999999999999999988  62 23488877555 5999999999998653 33322100      012


Q ss_pred             ceeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCc--------------------EEEecCCCC-
Q 015088          226 PIQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGL--------------------IKIALHGGY-  284 (413)
Q Consensus       226 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~--------------------~~~~~~~~~-  284 (413)
                      +..+..-  +.+..+...   + +...          ..|+.|..+....                    +......+. 
T Consensus       310 ~~~~~~~--v~l~~~~~~---~-~~~~----------~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~  373 (477)
T 3nks_A          310 TAVSVAV--VNLQYQGAH---L-PVQG----------FGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSW  373 (477)
T ss_dssp             CEEEEEE--EEEEETTCC---C-SSCS----------SEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHH
T ss_pred             CCCcEEE--EEEEECCCC---C-CCCC----------ceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCcc
Confidence            3333322  222222211   1 1011          1222222111111                    110000000 


Q ss_pred             C--CCCCCCCCCCchhHHHHHHHHHhhcCCCCCCC-CCeeece-eeeeecCCCCeEecCCCCC---CCCCEEEEeC-CCC
Q 015088          285 P--CDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSN-GPVATQL-CMYSITPDEDFVIDFLGGE---FGEDVVVAGG-FSG  356 (413)
Q Consensus       285 ~--~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~-~~~~~~~-g~~~~t~d~~p~ig~~~~~---~~~~~~~~~G-~~~  356 (413)
                      .  ...+..+.+.++..+.+++.+.++++...+.. ..+..|. ++-.++++..+.++.+...   ..+++++++. +.|
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~~~~~l~l~G~~~~G  453 (477)
T 3nks_A          374 LQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLPLTLAGASYEG  453 (477)
T ss_dssp             HHHHHHSSCCCCHHHHHHHHHHHHHHHHCCCSCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHHTTCSEEECSTTTSC
T ss_pred             ccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHhcCCCEEEEccCCCC
Confidence            0  00000011223366777778888876433210 0122343 4444677777655433210   0157888765 677


Q ss_pred             CCCccchHHHHHHHHHHhcC
Q 015088          357 HGFKMAPAVGRILADLVLSG  376 (413)
Q Consensus       357 ~G~~~a~~~a~~la~~i~~g  376 (413)
                      .|+.-+...|+.+|+.|+..
T Consensus       454 ~gv~~a~~sg~~aA~~il~~  473 (477)
T 3nks_A          454 VAVNDCIESGRQAAVSVLGT  473 (477)
T ss_dssp             CSHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHHHhc
Confidence            88888999999999999843

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.62  E-value=9.4e-15  Score=137.03  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=97.3

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc-ccCCCceeecccCCCC-----hHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS-SHGESRTIRATYPEDY-----YHPMVLESCLLWEQ   77 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~-s~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~   77 (413)
                      +..++||+|||||++|+++|+.|+++|++|+|||+....++... +.+....+........     ...+.....     
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l-----   98 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSAL-----   98 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHH-----
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHH-----
Confidence            34568999999999999999999999999999999987643211 1111111111100000     000000000     


Q ss_pred             HHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088           78 AQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                        ...                   ......++....+++.....                 ....+.    ......+.+
T Consensus        99 --~~~-------------------~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~~----~~~~~~l~~  136 (417)
T 3v76_A           99 --ARY-------------------RPQDFVALVERHGIGWHEKT-----------------LGQLFC----DHSAKDIIR  136 (417)
T ss_dssp             --HHS-------------------CHHHHHHHHHHTTCCEEECS-----------------TTEEEE----SSCHHHHHH
T ss_pred             --Hhc-------------------CHHHHHHHHHHcCCCcEEee-----------------CCEEee----CCCHHHHHH
Confidence              000                   01233344444454322111                 011111    234578889


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .|.+.+++.|++++++++|+++..  +  ++.+.|.+.+| +++||.||+|+|+++
T Consensus       137 ~L~~~l~~~Gv~i~~~~~V~~i~~--~--~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          137 MLMAEMKEAGVQLRLETSIGEVER--T--ASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEE--E--TTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEE--e--CCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            999999999999999999999988  6  45788999888 599999999999998

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.60  E-value=9e-15  Score=141.63  Aligned_cols=177  Identities=21%  Similarity=0.283  Sum_probs=98.6

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQS   80 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   80 (413)
                      |+++..++||+|||||++|+++|+.|+++|++|+|||+....... .  +  ..+.     +............+..+..
T Consensus         1 M~~~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~-~--g--~~~~-----~~~~~~~l~~lgl~~~~~~   70 (512)
T 3e1t_A            1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQ-I--G--ESLL-----PATVHGICAMLGLTDEMKR   70 (512)
T ss_dssp             ----CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCC-S--C--CBCC-----HHHHTTHHHHTTCHHHHHT
T ss_pred             CCCCCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCC-C--C--cccC-----cchHHHHHHHhCcHHHHHH
Confidence            555556799999999999999999999999999999998754211 0  0  0000     0000001111122222221


Q ss_pred             HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      . +... .....+.......             .....          +..    ...   ........++...+.+.|.
T Consensus        71 ~-~~~~-~~~~~~~~~~~~~-------------~~~~~----------~~~----~~~---~~~~~~~~v~r~~l~~~L~  118 (512)
T 3e1t_A           71 A-GFPI-KRGGTFRWGKEPE-------------PWTFG----------FTR----HPD---DPYGFAYQVERARFDDMLL  118 (512)
T ss_dssp             T-TCCE-ECEEEEECSSCSS-------------CEEEE----------SSS----SSS---STTCCEEBCCHHHHHHHHH
T ss_pred             c-CCcc-ccCceEEecCCcc-------------ccccc----------ccc----CCC---CCcceeeEecHHHHHHHHH
Confidence            1 1111 1111111110000             00000          000    000   0001124577889999999


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCC-CeEEEEcCCCc--EEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGE--KFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~--~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      +.+++.|++++++++|+++..  +++. .++.+.+.+|+  +++||.||.|+|.++. +.+.+ +.
T Consensus       119 ~~a~~~Gv~i~~~~~V~~v~~--~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~-vr~~l-g~  180 (512)
T 3e1t_A          119 RNSERKGVDVRERHEVIDVLF--EGERAVGVRYRNTEGVELMAHARFIVDASGNRTR-VSQAV-GE  180 (512)
T ss_dssp             HHHHHTTCEEESSCEEEEEEE--ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS-SGGGT-CC
T ss_pred             HHHHhCCCEEEcCCEEEEEEE--ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH-HHHHc-CC
Confidence            999999999999999999988  6321 13566666774  7999999999999873 44444 43

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.60  E-value=2.8e-14  Score=137.23  Aligned_cols=206  Identities=11%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh-HHhhhhhcCC----cccee
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV-GKLVKRITGL----ELPIQ  228 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s-~~l~~~~~g~----~~~~~  228 (413)
                      .+.+.|.+.+.+  ++|+++++|++|..  +  ++.+.|++.+| +++||+||+|++.+. ..++... ..    .++..
T Consensus       237 ~l~~~l~~~l~~--~~i~~~~~V~~i~~--~--~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~~~-~~~~~~~~~~~  308 (475)
T 3lov_A          237 SLIERLEEVLER--SEIRLETPLLAISR--E--DGRYRLKTDHG-PEYADYVLLTIPHPQVVQLLPDA-HLPELEQLTTH  308 (475)
T ss_dssp             HHHHHHHHHCSS--CEEESSCCCCEEEE--E--TTEEEEECTTC-CEEESEEEECSCHHHHHHHCTTS-CCHHHHTCCEE
T ss_pred             HHHHHHHhhccC--CEEEcCCeeeEEEE--e--CCEEEEEECCC-eEECCEEEECCCHHHHHHHcCcc-CHHHHhcCCCC
Confidence            344444443322  79999999999988  6  46789999889 599999999999876 3443321 11    24555


Q ss_pred             EEEEEEEEEEecCCCCCccccCCCCCeEEEcCCC-ce----Ee---cCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHH
Q 015088          229 AVETTVCYWRIKEGNEADYAVGGDFPSFASYGDP-YI----YG---TPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD  300 (413)
Q Consensus       229 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----y~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (413)
                      ++...++.++-+.  ....   ..+-.+...... .+    |.   .|.......+..+...+ .........+.++..+
T Consensus       309 ~~~~v~l~~~~~~--~~~~---~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~-~~~~~~~~~~~e~~~~  382 (475)
T 3lov_A          309 STATVTMIFDQQQ--SLPI---EGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGR-PGNDHLVHESDEVLQQ  382 (475)
T ss_dssp             EEEEEEEEEECCS--SCSS---SSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECB-TTBCGGGGSCHHHHHH
T ss_pred             eEEEEEEEECCcC--CCCC---CCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCC-CCCCcccCCCHHHHHH
Confidence            6555555555222  1110   001111111111 01    00   01111001111111111 1111111122334778


Q ss_pred             HHHHHHHhhcCCCCCC-CCCeeeceeeee-ecCCCCeEecCC-----CCCCCCCEEEEe-CCCCCCCccchHHHHHHHHH
Q 015088          301 SLKEWIQGRFAGRVDS-NGPVATQLCMYS-ITPDEDFVIDFL-----GGEFGEDVVVAG-GFSGHGFKMAPAVGRILADL  372 (413)
Q Consensus       301 ~l~~~~~~~~p~~~~~-~~~~~~~~g~~~-~t~d~~p~ig~~-----~~~~~~~~~~~~-G~~~~G~~~a~~~a~~la~~  372 (413)
                      .+++.+.++++...+. ...+..|....| ++++....+..+     ...  ++||+++ .+.+.|+.-+...|+.+|+.
T Consensus       383 ~~~~~L~~~~g~~~~p~~~~v~~w~~a~p~~~~g~~~~~~~~~~~l~~~~--~~l~~aG~~~~g~g~~~a~~sG~~aA~~  460 (475)
T 3lov_A          383 AVLQDLEKICGRTLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQY--PGIYLAGLAYDGVGLPDCVASAKTMIES  460 (475)
T ss_dssp             HHHHHHHHHHSSCCCCSEEEEEEEEEEEECCCTTHHHHHHHHHHHHHHHS--TTEEECSTTTSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCeEEEEEEcccCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEccCCCCCCHHHHHHHHHHHHHH
Confidence            8888899998753321 012345655444 555543211111     012  6899887 57777899999999999999


Q ss_pred             Hhc
Q 015088          373 VLS  375 (413)
Q Consensus       373 i~~  375 (413)
                      |+.
T Consensus       461 i~~  463 (475)
T 3lov_A          461 IEL  463 (475)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            984

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.59  E-value=4.1e-14  Score=138.67  Aligned_cols=65  Identities=15%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC------CC---------cEEEcCEEEEcCCCC
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS------NG---------EKFWGKKCVVTAGAW  212 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~------~g---------~~i~ad~VV~A~G~~  212 (413)
                      ..++...+.+.|.+.+++.|++|+++++|+++..  ++++..+.|.+.      +|         .+++||.||+|+|.+
T Consensus       139 ~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~--~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~  216 (584)
T 2gmh_A          139 YVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILF--HEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  216 (584)
T ss_dssp             EECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEE--CTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             EEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEE--cCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCC
Confidence            4556788999999999999999999999999988  633234446654      33         579999999999998


Q ss_pred             hH
Q 015088          213 VG  214 (413)
Q Consensus       213 s~  214 (413)
                      +.
T Consensus       217 S~  218 (584)
T 2gmh_A          217 GH  218 (584)
T ss_dssp             CH
T ss_pred             ch
Confidence            74

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.56  E-value=2.1e-14  Score=140.00  Aligned_cols=216  Identities=7%  Similarity=-0.034  Sum_probs=115.8

Q ss_pred             cCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          145 ELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      +....+++..+.+.|.+.+++.|++++++ +|+++..  ++++..+.|.+.+|++++||.||.|+|.++.-....+ +..
T Consensus       157 ~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~--~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~l-g~~  232 (538)
T 2aqj_A          157 SHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRL--NNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQAL-KEP  232 (538)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCT-CCC
T ss_pred             CccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEE--cCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHh-CCC
Confidence            44567899999999999999999999999 8999987  6333456788888877999999999999885322222 432


Q ss_pred             cce----eEEEEEEEEEEecCCCC-CccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhH
Q 015088          225 LPI----QAVETTVCYWRIKEGNE-ADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLL  299 (413)
Q Consensus       225 ~~~----~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (413)
                      ..-    .+... .+.+..+.... ..+.+   ...........++..|..+  +. .++...    ..+  ..+.++..
T Consensus       233 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~p~~~--~~-~~g~v~----~~~--~~~~~~~~  299 (538)
T 2aqj_A          233 FIDMSDYLLCDS-AVASAVPNDDARDGVEP---YTSSIAMNSGWTWKIPMLG--RF-GSGYVF----SSH--FTSRDQAT  299 (538)
T ss_dssp             EEECTTTCCCCE-EEEEEEECCHHHHCCCS---SEEEEECSSEEEEEEEETT--EE-EEEEEE----CTT--TSCHHHHH
T ss_pred             ccccccccccce-EEEEecccCCcccCCCC---ceeeeecCCceEEEecCCC--ce-EEEEEE----cCC--CCChHHHH
Confidence            210    11111 12222221100 00111   1111122233456666543  21 111100    000  00111133


Q ss_pred             HHHHHHHHhhcCCCCCCCCCeeeceeeee-ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCC
Q 015088          300 DSLKEWIQGRFAGRVDSNGPVATQLCMYS-ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEA  378 (413)
Q Consensus       300 ~~l~~~~~~~~p~~~~~~~~~~~~~g~~~-~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~  378 (413)
                      +.+.+.+..  +.+.+. ..+..+.+.++ +..++..++|..       .+....++|.|+.+|...|..|++.+.++..
T Consensus       300 ~~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~grvvliGDA-------Ah~~~P~~gqG~~~a~~da~~La~~L~~~~~  369 (538)
T 2aqj_A          300 ADFLKLWGL--SDNQPL-NQIKFRVGRNKRAWVNNCVSIGLS-------SCFLEPLESTGIYFIYAALYQLVKHFPDTSF  369 (538)
T ss_dssp             HHHHHHHTC--CTTCCC-EEEECCCEEESCSEETTEEECGGG-------TEECCGGGSCHHHHHHHHHHHHHHTCCBTTC
T ss_pred             HHHHHHhcC--CCCCCc-eEEeeccccccccccCCEEEEccc-------ccccCcchhccHHHHHHHHHHHHHHhhccCC
Confidence            333333322  112221 23334445433 234445555533       3455777899999999999999998874433


Q ss_pred             Ccccccccc
Q 015088          379 QGVELQHFR  387 (413)
Q Consensus       379 ~~~~~~~~~  387 (413)
                      ....++.|+
T Consensus       370 ~~~~l~~Y~  378 (538)
T 2aqj_A          370 DPRLSDAFN  378 (538)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            223345553

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.55  E-value=1.4e-13  Score=128.21  Aligned_cols=65  Identities=15%  Similarity=0.083  Sum_probs=53.5

Q ss_pred             ceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          148 GVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..++...+.+.|.+.+.+.|++++++++|++++.  +   +  .|++.+|+++++|.||.|+|.++. +.+.+
T Consensus       102 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---~--~v~~~~g~~~~ad~vV~AdG~~s~-vr~~l  166 (379)
T 3alj_A          102 RIMTRSHLHDALVNRARALGVDISVNSEAVAADP--V---G--RLTLQTGEVLEADLIVGADGVGSK-VRDSI  166 (379)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--T---T--EEEETTSCEEECSEEEECCCTTCH-HHHHH
T ss_pred             EEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--C---C--EEEECCCCEEEcCEEEECCCccHH-HHHHh
Confidence            4567788999999999999999999999999965  4   3  677778888999999999999884 33434

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.55  E-value=3.8e-14  Score=134.86  Aligned_cols=166  Identities=20%  Similarity=0.180  Sum_probs=97.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCC-ceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES-RTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|+.|+++|.+|+|||+....++.....+.+ ..+...   ..           +..+...++.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~---~~-----------~~~~~~~~~~   90 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNR---LP-----------LDEIVKHIPG   90 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEEC---SC-----------HHHHHHTCTB
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCc---cc-----------HHHHHHHhcc
Confidence            45899999999999999999999999999999987654211111110 011100   00           0011111100


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .     ..+....-.........+++...|+++....                 ...++...   .....+.+.|.+.++
T Consensus        91 ~-----~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-----------------~g~~~p~~---~~~~~l~~~L~~~~~  145 (447)
T 2i0z_A           91 N-----GRFLYSAFSIFNNEDIITFFENLGVKLKEED-----------------HGRMFPVS---NKAQSVVDALLTRLK  145 (447)
T ss_dssp             T-----GGGGHHHHHHSCHHHHHHHHHHTTCCEEECG-----------------GGEEEETT---CCHHHHHHHHHHHHH
T ss_pred             C-----hHHHHHHHHhcCHHHHHHHHHhcCCceEEee-----------------CCEEECCC---CCHHHHHHHHHHHHH
Confidence            0     0000000000001223334444454322110                 01111111   134788899999999


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.|++++++++|++|..  ++ +..+.|++.+|++++||.||+|+|+++
T Consensus       146 ~~GV~i~~~~~V~~i~~--~~-~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          146 DLGVKIRTNTPVETIEY--EN-GQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HTTCEEECSCCEEEEEE--ET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HCCCEEEeCcEEEEEEe--cC-CcEEEEEECCCCEEECCEEEECCCCCc
Confidence            99999999999999987  52 244888888887799999999999998

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.55  E-value=4.6e-13  Score=131.33  Aligned_cols=181  Identities=18%  Similarity=0.162  Sum_probs=104.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHH--HHHHHHHHHHHHHhC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV--LESCLLWEQAQSEIG   83 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~   83 (413)
                      ..+||+|||||++|+++|+.|+++|++|+||||....++...  ...+.+..... .....+.  .....++..+...-.
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~--~a~gg~~~~~~-~~~~~~g~~ds~~~~~~~~~~~g~  201 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK--LAAGGMNAAWT-DQQKAKKITDSPELMFEDTMKGGQ  201 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG--GCCSCEECSSC-HHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh--hcCceEEeCCC-HHHHHhCCCCCHHHHHHHHHHhcC
Confidence            368999999999999999999999999999999987754322  22222221110 0000000  000011111111100


Q ss_pred             CeeEEeeceeeeCCCChhh-------HHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKS-------LRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                      .            ..+.+.       .....+++...|+++..+.      ..+.     ......+.+.++...+..+.
T Consensus       202 ~------------~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------~~~g-----~~~~r~~~~~~g~~~g~~l~  258 (571)
T 1y0p_A          202 N------------INDPALVKVLSSHSKDSVDWMTAMGADLTDVG------MMGG-----ASVNRAHRPTGGAGVGAHVV  258 (571)
T ss_dssp             T------------CSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEE------CCTT-----CSSCCEEESTTTCCHHHHHH
T ss_pred             C------------CCCHHHHHHHHHccHHHHHHHHhcCCCCccCc------ccCC-----cCCCeeEecCCCCCCHHHHH
Confidence            0            000111       1233445555665542110      0011     11122334444556678899


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.|.+.+++.|++|+++++|++|..  ++++..  +.+.+.+|+  +++||.||+|+|+++.
T Consensus       259 ~~L~~~~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          259 QVLYDNAVKRNIDLRMNTRGIEVLK--DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHHTTCEEESSEEEEEEEE--CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHhcCCEEEeCCEeeEeEE--cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            9999999999999999999999988  642233  334443665  6899999999999874

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.55  E-value=2.8e-13  Score=132.66  Aligned_cols=189  Identities=16%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHH--HHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP--MVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~   82 (413)
                      +..+||+|||||++|+++|+.|+++|.+|+||||....++.  +....+.+...... ....  +......++..+.+..
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~--s~~s~gg~~~~~~~-~~~~~g~~ds~~~~~~~~~~~~  195 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN--SMISAGGMNAVGTK-QQTAHGVEDKVEWFIEDAMKGG  195 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT--GGGCCSCEECSSCH-HHHHTTCCCCHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc--ccccCceeEccCCH-HHHHhCCCCCHHHHHHHHHHhc
Confidence            35689999999999999999999999999999999877533  22222222211100 0000  0000011122221111


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ...  .....+.   .-.......++++...|+++..+.      ..+.     ......+.+.++.+.+..+.+.|.+.
T Consensus       196 ~~~--~~~~~~~---~~~~~~~~~i~~l~~~Gv~~~~~~------~~~g-----~~~~r~~~~~~~~~~~~~l~~~L~~~  259 (566)
T 1qo8_A          196 RQQ--NDIKLVT---ILAEQSADGVQWLESLGANLDDLK------RSGG-----ARVDRTHRPHGGKSSGPEIIDTLRKA  259 (566)
T ss_dssp             TTC--SCHHHHH---HHHHHHHHHHHHHHHTTCCCCEEE------CCTT-----CSSCCEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCC--CCHHHHH---HHHhccHHHHHHHHhcCCcccccc------ccCC-----CCCCceeecCCCCCCHHHHHHHHHHH
Confidence            000  0000000   000011234455556666543211      0111     11112234445556778899999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +++.|++|+++++|++|..  ++++..  +.+.+.+|+  +++||.||+|+|+++.
T Consensus       260 ~~~~gv~i~~~~~v~~l~~--~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          260 AKEQGIDTRLNSRVVKLVV--NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHTTCCEECSEEEEEEEE--CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             HHhcCCEEEeCCEEEEEEE--CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            9999999999999999988  631233  344444675  6899999999999885

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.54  E-value=1.5e-13  Score=136.29  Aligned_cols=73  Identities=19%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             eeChHHHHHHHHHHHHHCCC--EEEcCceEEEEEEecccC--CCeEEEEcC------CC--cEEEcCEEEEcCCCChHHh
Q 015088          149 VIKPTKAVSMFQTLAIKNGA--VLRDNMEVKTVLKVKDAV--KGGVTVVTS------NG--EKFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~~~--~~~~~v~~~------~g--~~i~ad~VV~A~G~~s~~l  216 (413)
                      .++...+.+.|.+.+.+.|+  +|+++++|++++.  +++  +..+.|++.      +|  ++++||+||.|+|.+|. +
T Consensus       137 ~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~--~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~-v  213 (639)
T 2dkh_A          137 ILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKV--DHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN-V  213 (639)
T ss_dssp             ECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEE--CTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH-H
T ss_pred             eeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEE--CCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH-H
Confidence            45667889999999999987  9999999999988  632  125666543      45  47999999999999985 4


Q ss_pred             hhhhcCCcc
Q 015088          217 VKRITGLEL  225 (413)
Q Consensus       217 ~~~~~g~~~  225 (413)
                      -+.+ |+..
T Consensus       214 R~~l-g~~~  221 (639)
T 2dkh_A          214 RRAI-GRQL  221 (639)
T ss_dssp             HHHT-TCCC
T ss_pred             HHHh-CCCC
Confidence            3444 6544

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.53  E-value=4.8e-14  Score=137.61  Aligned_cols=212  Identities=11%  Similarity=0.017  Sum_probs=115.0

Q ss_pred             CceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCcc
Q 015088          147 GGVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLEL  225 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~  225 (413)
                      ...+++..+.+.|.+.+++. |++++++ +|+++..  ++++..+.|.+.+|++++||.||.|+|.++.-+.+.+ +...
T Consensus       188 ~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~--~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~l-g~~~  263 (550)
T 2e4g_A          188 AWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQR--DANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAM-EEPF  263 (550)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEE--CTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCT-CCCE
T ss_pred             ceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEE--cCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHh-CCCc
Confidence            35688899999999999998 9999999 9999987  5333457788888888999999999999885333333 4332


Q ss_pred             c----eeEEEEEEEEEEecCCCC-CccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHH
Q 015088          226 P----IQAVETTVCYWRIKEGNE-ADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLD  300 (413)
Q Consensus       226 ~----~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (413)
                      +    ..+... .+.+....... ....+   ............+.+|..+  . ...+....    ..  ..+    .+
T Consensus       264 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~ipl~~--~-~~~g~v~~----~~--~~~----~~  326 (550)
T 2e4g_A          264 LDMSDHLLNDS-AVATQVPHDDDANGVEP---FTSAIAMKSGWTWKIPMLG--R-FGTGYVYS----SR--FAT----ED  326 (550)
T ss_dssp             EECTTTCCCCE-EEEEEEECCHHHHCCCS---SEEEEECSSEEEEEEECSS--E-EEEEEEEC----TT--TSC----HH
T ss_pred             ccccccccccc-eEEEeecccCCcccCCC---ceeeeecCCceEEEccCCC--c-cceEEEEe----cC--CCC----hH
Confidence            1    011111 11111111000 00001   1112222333456666543  1 11111000    00  001    12


Q ss_pred             HHHHHHHhhcC---CCCCCCCCeeeceeeee-ecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcC
Q 015088          301 SLKEWIQGRFA---GRVDSNGPVATQLCMYS-ITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSG  376 (413)
Q Consensus       301 ~l~~~~~~~~p---~~~~~~~~~~~~~g~~~-~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g  376 (413)
                      ...+.+.+.+.   .+.+. ..+..+.+.++ +..++..+||...       .....+.|.|+.++...|..||+.+.++
T Consensus       327 ~~~~~l~~~~~~~p~l~~~-~~i~~~~~~~~~~~~~rvvliGDAA-------h~~~P~~GqGi~~a~~da~~La~~L~~~  398 (550)
T 2e4g_A          327 EAVREFCEMWHLDPETQPL-NRIRFRVGRNRRAWVGNCVSIGTSS-------CFVEPLESTGIYFVYAALYQLVKHFPDK  398 (550)
T ss_dssp             HHHHHHHHHTTCCTTTSCC-EEEECCCEEESCSEETTEEECSTTT-------EECCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHhhCcCcccCCC-ceEEecCCCccccccCCEEEEehhh-------cccCccchhhHHHHHHHHHHHHHhcccc
Confidence            22333334443   23321 23334455444 3345555665432       3445668999999999999999998744


Q ss_pred             CCCcccccccc
Q 015088          377 EAQGVELQHFR  387 (413)
Q Consensus       377 ~~~~~~~~~~~  387 (413)
                      ......++.|+
T Consensus       399 ~~~~~~l~~Y~  409 (550)
T 2e4g_A          399 SLNPVLTARFN  409 (550)
T ss_dssp             TCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            33233345553

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.51  E-value=1.4e-13  Score=133.14  Aligned_cols=58  Identities=16%  Similarity=0.069  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  ++ ++...|++.+|+++.||.||.+++++.
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~--~~-~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMET--TG-NKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--ET-TEEEEEEETTSCEEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEe--eC-CeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            67889999999999999999999999998  63 355668999999999999999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.51  E-value=1e-13  Score=129.57  Aligned_cols=157  Identities=17%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc-ccCCCceeecccCCCC--h---HHHHHHHHHHHHHHHH
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS-SHGESRTIRATYPEDY--Y---HPMVLESCLLWEQAQS   80 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~-s~~~~~~~~~~~~~~~--~---~~l~~~~~~~~~~~~~   80 (413)
                      ++||+|||||++|+++|+.|+++|.+|+|||++...++... +.+....+.+....+.  +   ..+.....       .
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l-------~   76 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL-------A   76 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH-------H
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHH-------H
Confidence            68999999999999999999999999999999876532111 1110000111000000  0   00000000       0


Q ss_pred             HhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHH
Q 015088           81 EIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQ  160 (413)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  160 (413)
                      .                   .......+++...|+++...+                 ...++ +..   ++..+.+.|.
T Consensus        77 ~-------------------~~~~~~~~~~~~~Gi~~~~~~-----------------~g~~~-p~~---~~~~l~~~L~  116 (401)
T 2gqf_A           77 R-------------------YTNWDFISLVAEQGITYHEKE-----------------LGQLF-CDE---GAEQIVEMLK  116 (401)
T ss_dssp             H-------------------SCHHHHHHHHHHTTCCEEECS-----------------TTEEE-ETT---CTHHHHHHHH
T ss_pred             h-------------------CCHHHHHHHHHhCCCceEECc-----------------CCEEc-cCC---CHHHHHHHHH
Confidence            0                   001123344445555432110                 11112 211   5678889999


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccC--CCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAV--KGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~--~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.+++.|++++++++|+++..  +++  ++.+.|.+.++ +++||.||+|+|.++
T Consensus       117 ~~~~~~Gv~i~~~~~v~~i~~--~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          117 SECDKYGAKILLRSEVSQVER--IQNDEKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             HHHHHHTCEEECSCCEEEEEE--CCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHCCCEEEeCCEEEEEEc--ccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            999999999999999999987  521  23478888777 599999999999988

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.49  E-value=2.5e-13  Score=132.44  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---C--cEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---G--EKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      .++...+.+.|.+.+.+.   |+++++|++++.  +  ++.+.+++.+   |  ++++||+||.|+|.+|. +-+.+ |+
T Consensus       134 ~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~--~--~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~l-g~  204 (549)
T 2r0c_A          134 ICPQHWLAPLLAEAVGER---LRTRSRLDSFEQ--R--DDHVRATITDLRTGATRAVHARYLVACDGASSP-TRKAL-GI  204 (549)
T ss_dssp             ECCHHHHHHHHHHHHGGG---EECSEEEEEEEE--C--SSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHH-TC
T ss_pred             ccCHHHHHHHHHHHHHHh---cccCcEEEEEEE--e--CCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHc-CC
Confidence            445567778888888776   899999999988  6  3456565443   6  37999999999999985 44444 65


Q ss_pred             ccce
Q 015088          224 ELPI  227 (413)
Q Consensus       224 ~~~~  227 (413)
                      ..+-
T Consensus       205 ~~~g  208 (549)
T 2r0c_A          205 DAPP  208 (549)
T ss_dssp             CCCB
T ss_pred             CCCC
Confidence            5443

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.49  E-value=1.2e-12  Score=126.21  Aligned_cols=174  Identities=20%  Similarity=0.250  Sum_probs=105.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHH--HHhCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQ--SEIGY   84 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~   84 (413)
                      .+||+|||||++|+++|+.|+++|++|+|||++...+++.                      ......|....  .....
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~----------------------~~~~g~w~~~~~~~~~~i  164 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERT----------------------KDTFGFWRKRTLNPESNV  164 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHH----------------------HHHHHHHHHCCCCTTSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccc----------------------cchhcccccccccccccc
Confidence            4899999999999999999999999999999976442100                      00001111100  00000


Q ss_pred             ee------EEeeceeeeCCCC-hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088           85 KV------YFKAHQFDMGPSE-NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        85 ~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .+      .+..+.+...... ........+.+...+.+......        .            .+..+......+.+
T Consensus       165 ~~g~gGag~~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~--------~------------~p~~G~~~~~~l~~  224 (549)
T 3nlc_A          165 QFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYV--------S------------KPHIGTFKLVTMIE  224 (549)
T ss_dssp             SSSTTGGGTTSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTB--------S------------SCCCCHHHHHHHHH
T ss_pred             eeccCCcccccCCceEEEeccccccHHHHHHHHHHcCCCceEeec--------c------------ccccccchHHHHHH
Confidence            00      0000011100000 11113344445555554322210        0            12224445678889


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH---hhhhhcCCccc
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK---LVKRITGLELP  226 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~---l~~~~~g~~~~  226 (413)
                      .|.+.+++.|++++++++|++|..  ++ +..+.|.+.+|++++||.||+|+|.++..   ++... |+.+.
T Consensus       225 ~L~~~l~~~Gv~I~~~t~V~~I~~--~~-~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~-Gi~~~  292 (549)
T 3nlc_A          225 KMRATIIELGGEIRFSTRVDDLHM--ED-GQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHER-GVYME  292 (549)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEEE--SS-SBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHT-TCCCE
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEE--eC-CEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHc-CCCcc
Confidence            999999999999999999999988  62 24566888889889999999999999864   33433 55443

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.48  E-value=6.9e-12  Score=124.64  Aligned_cols=221  Identities=12%  Similarity=0.078  Sum_probs=113.7

Q ss_pred             eeChHHHHHHHHHHHHHCC---CEEEcCceEEEEEEecccC------CCeEEEEc-------------------------
Q 015088          149 VIKPTKAVSMFQTLAIKNG---AVLRDNMEVKTVLKVKDAV------KGGVTVVT-------------------------  194 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~~~~~------~~~~~v~~-------------------------  194 (413)
                      .++...+.+.|.+.+.+.|   ++++++++|++++.  ++.      +..+.++.                         
T Consensus       115 ~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~--d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (665)
T 1pn0_A          115 VLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEI--DSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSN  192 (665)
T ss_dssp             ECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEE--CGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCH
T ss_pred             EeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEe--cCcccccCCCCCEEEEEEeccccccccccccccccccccccc
Confidence            4566788889999988877   89999999999987  631      13455532                         


Q ss_pred             -----------------CCC--cEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCCCCccccCCCCCe
Q 015088          195 -----------------SNG--EKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEADYAVGGDFPS  255 (413)
Q Consensus       195 -----------------~~g--~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  255 (413)
                                       .+|  ++++||+||.|.|.+|. +-+.+ ++..+-.........+.+....  .+.. .....
T Consensus       193 l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~-VR~~l-g~~~~g~~~~~~~~v~d~~~~~--~~p~-~~~~~  267 (665)
T 1pn0_A          193 LQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSW-VRRTL-GFEMIGEQTDYIWGVLDAVPAS--NFPD-IRSRC  267 (665)
T ss_dssp             HHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCH-HHHHH-TCCCEEEEEEEEEEEEEEEEEC--CCTT-TTSEE
T ss_pred             ccccccccccccccccCCCCceEEEEeCEEEeccCCCCH-HHHhc-CCCCCCCCccEEEEEEEEEECC--CCCC-cceEE
Confidence                             245  47999999999999884 43444 7655444333322222221100  1110 01112


Q ss_pred             EEEc-CCCceEecCCCCCCCcEEEecC-CCCCCC---CCCCCCCCchhHHHHHHHHHhhcCCCC-CCCCCeeeceeeee-
Q 015088          256 FASY-GDPYIYGTPSLEYPGLIKIALH-GGYPCD---PDRRPWGPGLLLDSLKEWIQGRFAGRV-DSNGPVATQLCMYS-  328 (413)
Q Consensus       256 ~~~~-~~~~~y~~p~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~p~~~-~~~~~~~~~~g~~~-  328 (413)
                      .... ....+.+.|..+  +.+.+... .....+   ......    ..+.+.+.+++.+.... .. ..+ .|...++ 
T Consensus       268 ~~~~~~~g~~~~~P~~~--~~~r~~~~~~~~~~~~~~~~~~~~----t~e~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~  339 (665)
T 1pn0_A          268 AIHSAESGSIMIIPREN--NLVRFYVQLQARAEKGGRVDRTKF----TPEVVIANAKKIFHPYTFDV-QQL-DWFTAYHI  339 (665)
T ss_dssp             EEECSSSCEEEEEECST--TCEEEEEEECC----------CCC----CHHHHHHHHHHHHTTSCCEE-EEE-EEEEEEEE
T ss_pred             EEEeCCCceEEEEEcCC--CEEEEEEEeCCccccccccCcCCC----CHHHHHHHHHHHhCcccCce-eeE-EEEEeeec
Confidence            2221 234456666644  33332211 111000   001111    34566666766664322 11 112 2333222 


Q ss_pred             -------ec-CCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHH----HHHHHHhcCCCCccccccccccccc
Q 015088          329 -------IT-PDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGR----ILADLVLSGEAQGVELQHFRISRFK  392 (413)
Q Consensus       329 -------~t-~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~----~la~~i~~g~~~~~~~~~~~~~R~~  392 (413)
                             +. .++..++|.       -.+...-++|.|+.+|..-|.    .|+..+. |......++.|.-+|..
T Consensus       340 ~~r~a~~~~~~gRV~L~GD-------AAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~-g~a~~~lL~tYe~eR~p  407 (665)
T 1pn0_A          340 GQRVTEKFSKDERVFIAGD-------ACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLT-GRAKRDILKTYEEERQP  407 (665)
T ss_dssp             EEEECSCSEETTTEEECGG-------GTEECCSTTCCHHHHHHHHHHHHHHHHHHHHT-TCBCGGGGHHHHHHHHH
T ss_pred             cceehhhcccCCCEEEEEC-------ccccCCCcccCCcchhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHH
Confidence                   12 233444443       345666778888888776664    4455543 55444457777766643

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.48  E-value=1.1e-12  Score=128.36  Aligned_cols=197  Identities=17%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCC-CChHHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPE-DYYHPMVLESCLLWEQAQ   79 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~   79 (413)
                      |...+.++||+|||||++|+++|+.|+++|.+|+||||....++ .++...+++....... ......      .+.+..
T Consensus         1 m~~~~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g-~s~~a~GGi~~~~~~~~~ds~~~------~~~d~~   73 (588)
T 2wdq_A            1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS-HTVSAQGGITVALGNTHEDNWEW------HMYDTV   73 (588)
T ss_dssp             CCSCEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS-GGGGCCSCEECCCCSSSCCCHHH------HHHHHH
T ss_pred             CCCccccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC-cchhhCCccEEcCCCCCCCCHHH------HHHHHH
Confidence            55555679999999999999999999999999999999876532 1222222222111110 111110      111111


Q ss_pred             HHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCC----CCeEEEEecCCceeChHH
Q 015088           80 SEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIP----ENWVGVATELGGVIKPTK  154 (413)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  154 (413)
                      ......  .....+..   -.......++++...|+++.......+. ..++. ....    ......+..   ...+..
T Consensus        74 ~~g~~~--~d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g-~~~~~~~~~~~r~~~~~---d~~g~~  144 (588)
T 2wdq_A           74 KGSDYI--GDQDAIEY---MCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGG-QSKNFGGEQAARTAAAA---DRTGHA  144 (588)
T ss_dssp             HHTTTC--SCHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTT-CBSTTTCSBCCCEECST---TCHHHH
T ss_pred             HhcCCC--CCHHHHHH---HHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCC-ccccccccCcceEEEcC---CCCHHH
Confidence            110000  00000000   0001123445566677665432211100 00111 0000    011111111   113467


Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE---cCCCc--EEEcCEEEEcCCCChHH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV---TSNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      +...|.+.+++.|++|+++++|++|..  ++++..+.|.   +.+|+  ++.|+.||+|+|+++..
T Consensus       145 l~~~L~~~~~~~gv~i~~~~~v~~L~~--~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          145 LLHTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEE--CTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHhCCCEEEeCcEEEEEEE--CCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            889999999999999999999999987  5223333333   25665  68999999999998754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.47  E-value=3.9e-13  Score=126.21  Aligned_cols=71  Identities=10%  Similarity=-0.004  Sum_probs=58.4

Q ss_pred             ceeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeE--EEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCc
Q 015088          148 GVIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGV--TVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLE  224 (413)
Q Consensus       148 ~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~  224 (413)
                      ..++...+.+.|.+.+++. |++++++++|++++.  +  ++.+  .|++.+|+++++|.||.|+|.++. +.+.+ +..
T Consensus       102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~--~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~-vr~~l-g~~  175 (399)
T 2x3n_A          102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR--D--ERHAIDQVRLNDGRVLRPRVVVGADGIASY-VRRRL-LDI  175 (399)
T ss_dssp             EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEE--C--TTSCEEEEEETTSCEEEEEEEEECCCTTCH-HHHHT-SCC
T ss_pred             ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEE--c--CCceEEEEEECCCCEEECCEEEECCCCChH-HHHHh-CCC
Confidence            4567889999999999988 999999999999988  6  3456  788888888999999999999985 44443 544

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.47  E-value=3.3e-13  Score=130.56  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcC-EEEEcCCCCh
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGK-KCVVTAGAWV  213 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad-~VV~A~G~~s  213 (413)
                      .+...|.+.+++.|++|+++++|++|..  ++++..+.|.+. +++  +++|+ .||+|+|+++
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~--~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVT--DDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEE--CTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEE--CCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            8899999999999999999999999988  633344444432 332  68995 9999999987

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.43  E-value=4.5e-12  Score=125.18  Aligned_cols=61  Identities=13%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEE-cCCCc--EEEcCEEEEcCCCChHH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVV-TSNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~-~~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      +..+...|.+.+.+.|++|++++.|++|..  ++ +..  +.+. +.+|+  .+.|+.||+|||+++..
T Consensus       157 G~~l~~~L~~~a~~~gv~i~~~~~v~~L~~--~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          157 GHTMLFAVANECLKLGVSIQDRKEAIALIH--QD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEECcEEEEEEe--cC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            457889999999889999999999999987  53 232  3332 35675  58999999999998843

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.43  E-value=3.4e-12  Score=119.57  Aligned_cols=61  Identities=11%  Similarity=-0.107  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc-CCCc--EEEcCEEEEcCCCChH
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT-SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~-~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +...+.+.|.+.+.+.|++++++++|+++..  +++ +.+.|++ .+|+  +++||.||.|+|.+|.
T Consensus       101 ~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~--~~~-~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          101 GQTEVTRDLMEAREACGATTVYQAAEVRLHD--LQG-ERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEEC--TTS-SSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             chHHHHHHHHHHHHhcCCeEEeceeEEEEEE--ecC-CceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            4467778888888888999999999999987  532 3455665 5776  6999999999999885

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.43  E-value=4.1e-12  Score=123.40  Aligned_cols=65  Identities=12%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             CceeChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          147 GGVIKPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       147 ~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ...++...+.+.|.+.+++ .|++++++ +|+++..  ++++..+.|.+.+|.+++||.||.|+|.++.
T Consensus       169 ~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~--~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          169 GYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIIN--NQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             EEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEE--CTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             eEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEe--cCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            3567889999999999999 89999999 6999987  6333456777877767999999999999874

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.42  E-value=7.1e-13  Score=128.68  Aligned_cols=49  Identities=29%  Similarity=0.403  Sum_probs=41.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCccc
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg~~~s~   49 (413)
                      |+..+.++||||||||++||+||++|+++ |++|+|+|+++.+||...|.
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~   53 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTD   53 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEE
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeE
Confidence            44455679999999999999999999985 99999999999999877663

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.42  E-value=1.1e-11  Score=121.37  Aligned_cols=189  Identities=17%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCC-ChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ..+||+|||+|++|+++|+.|+++|++|+|+|+....++..  ....+.+....... ....+......++..+.+. +.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~--~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~-g~  201 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT--KLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKG-GR  201 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG--GGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHH-TT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch--hhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHh-cC
Confidence            36799999999999999999999999999999998775432  21222221111100 0000000000111111111 10


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .. .....+..   -.+.....++++...|+++..+.      ....     ......+.+.++......+...|.+.++
T Consensus       202 ~~-~~~~~v~~---~~~~~~~~i~~l~~~Gv~~~~~~------~~gg-----~~~~r~~~~~~~~~~g~~l~~~L~~~~~  266 (572)
T 1d4d_A          202 NI-NDPELVKV---LANNSSDSIDWLTSMGADMTDVG------RMGG-----ASVNRSHRPTGGAGVGAHVAQVLWDNAV  266 (572)
T ss_dssp             TC-SCHHHHHH---HHHTHHHHHHHHHHHTCCCCEEE------CCTT-----CSSCCEEESTTTCCHHHHHHHHHHHHHH
T ss_pred             CC-CCHHHHHH---HHHccHHHHHHHHhcCCcccccc------ccCC-----CcCCeeEecCCCCCCHHHHHHHHHHHHH
Confidence            00 00000000   00011233444555555542211      0011     0111122333444556788999999999


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +.|++|+++++|++|..  ++++..  +.+.+.+|+  ++.||.||+|+|+++.
T Consensus       267 ~~gv~i~~~t~v~~l~~--~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          267 KRGTDIRLNSRVVRILE--DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HTTCEEESSEEEEEEEE--C--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HcCCeEEecCEEEEEEE--CCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            99999999999999987  631233  344444664  6899999999999874

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.41  E-value=2.2e-12  Score=125.09  Aligned_cols=186  Identities=15%  Similarity=0.110  Sum_probs=89.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHH-HHHHHHHHhC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCL-LWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~   83 (413)
                      +..+||+|||||++|+++|+.|++ |.+|+||||....++  ++....+.+.......       .+.+ .+.+......
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g--~s~~a~Ggi~~~~~~~-------ds~~~~~~d~l~~g~   75 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEG--STFYAQGGIAAVFDET-------DSIDSHVEDTLIAGA   75 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---------------CCSH-------HHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCC--ChhhcCCCEEEecCCC-------CCHHHHHHHHHHhhc
Confidence            457899999999999999999999 999999999876542  2222223222221110       1111 1111111110


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccC----HHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLD----CRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                      ..+  ....+..   -.......++++...|+++....    ..++ ....+. ..   ....++.   ....+..+.+.
T Consensus        76 g~~--d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~~~~~g~~~~~~~gg-~~---~~r~~~~---~d~~g~~l~~~  143 (540)
T 1chu_A           76 GIC--DRHAVEF---VASNARSCVQWLIDQGVLFDTHIQPNGEESYHLTREGG-HS---HRRILHA---ADATGREVETT  143 (540)
T ss_dssp             TCC--CHHHHHH---HHHHHHHHHHHHHHTTCC---------------------------------------------CC
T ss_pred             ccC--CHHHHHH---HHHhHHHHHHHHHHcCCCcccCcccCcCCccccccccc-cc---cCeEEEe---CCCCHHHHHHH
Confidence            000  0000000   00011234556666777654322    1111 011111 00   0000010   11233567778


Q ss_pred             HHHHHHH-CCCEEEcCceEEEEEEecccCC------CeEEEEc---CCCc--EEEcCEEEEcCCCChH
Q 015088          159 FQTLAIK-NGAVLRDNMEVKTVLKVKDAVK------GGVTVVT---SNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       159 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~------~~~~v~~---~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      |.+.+++ .|++|+++++|++|..  ++++      ..+.|.+   .+|+  ++.|+.||+|+|+++.
T Consensus       144 L~~~~~~~~gv~i~~~~~v~~L~~--~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          144 LVSKALNHPNIRVLERTNAVDLIV--SDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEE--GGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHcCCCCEEEeCcEEEEEEE--cCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            8888888 6999999999999987  5323      3333433   3565  6899999999999885

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.41  E-value=1.3e-12  Score=120.60  Aligned_cols=136  Identities=16%  Similarity=0.239  Sum_probs=91.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ++||+|||||++|+++|+.|+++|++|+|||++...|+....         .++.                      .. 
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~---------~~~~----------------------~~-   50 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH---------AWHS----------------------LH-   50 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG---------SCTT----------------------CB-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC---------CCCC----------------------cE-
Confidence            589999999999999999999999999999998766422100         0000                      00 


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                              .....           ....              ++. +..+       ...........+...+.+.+++.
T Consensus        51 --------~~~~~-----------~~~~--------------~~~-~~~~-------~~~~~~~~~~~~~~~l~~~~~~~   89 (357)
T 4a9w_A           51 --------LFSPA-----------GWSS--------------IPG-WPMP-------ASQGPYPARAEVLAYLAQYEQKY   89 (357)
T ss_dssp             --------CSSCG-----------GGSC--------------CSS-SCCC-------CCSSSSCBHHHHHHHHHHHHHHT
T ss_pred             --------ecCch-----------hhhh--------------CCC-CCCC-------CCccCCCCHHHHHHHHHHHHHHc
Confidence                    00000           0000              000 0000       01112233467788888888999


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEE-EEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVT-VVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~-v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      |++++++++|+++..  +  ++.+. |.+.+| ++++|+||+|+|.++....+.+
T Consensus        90 ~~~~~~~~~v~~i~~--~--~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~  139 (357)
T 4a9w_A           90 ALPVLRPIRVQRVSH--F--GERLRVVARDGR-QWLARAVISATGTWGEAYTPEY  139 (357)
T ss_dssp             TCCEECSCCEEEEEE--E--TTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCC
T ss_pred             CCEEEcCCEEEEEEE--C--CCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCC
Confidence            999999999999988  6  56788 999888 5999999999998876544333

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.41  E-value=9.6e-13  Score=120.81  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=87.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHH---cCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~---~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +||+|||||++|+++|+.|++   +|++|+|+||+...|++.++......     .                      +.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~-----~----------------------~~   54 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHN-----P----------------------QC   54 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSC-----T----------------------TC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCC-----C----------------------Cc
Confidence            589999999999999999999   99999999998877654333211000     0                      00


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+......+.........+...++.+...+....+...      ... ...... ...+....+.   ..+.+.+.+.  
T Consensus        55 ~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~-~~~~~~-~~~~~~~~g~---~~l~~~l~~~--  121 (342)
T 3qj4_A           55 TADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSP------IEG-MVMKEG-DCNFVAPQGI---SSIIKHYLKE--  121 (342)
T ss_dssp             EEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSC------EET-CCC--C-CEEEECTTCT---THHHHHHHHH--
T ss_pred             eEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchh------hcc-eeccCC-ccceecCCCH---HHHHHHHHHh--
Confidence            00000000111111111122222322222221111000      000 000000 1122222222   3444444443  


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCC
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGA  211 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~  211 (413)
                       .|++|+++++|++|..  +  +++|.|.+.+|+++++|.||+|+.+
T Consensus       122 -~g~~i~~~~~V~~i~~--~--~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          122 -SGAEVYFRHRVTQINL--R--DDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             -HTCEEESSCCEEEEEE--C--SSSEEEEESSSCCEEESEEEECSCH
T ss_pred             -cCCEEEeCCEEEEEEE--c--CCEEEEEECCCCEEEcCEEEECCCH
Confidence             3899999999999988  6  4678899988877899999999985

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.39  E-value=8e-12  Score=122.56  Aligned_cols=189  Identities=13%  Similarity=0.177  Sum_probs=101.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHHHh
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      ..+||||||||++|+++|+.|+++|.+|+||||....++  .+....+.+.....   ........      .+.+....
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g--~s~~a~GGi~a~~~~~~~ds~~~~~------~dtl~~g~   88 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRS--HTVAAQGGINAALGNMEDDNWRWHF------YDTVKGSD   88 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGS--GGGGCCSCEECCCCSSSCCCHHHHH------HHHHHHTT
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC--CchhhCCCcEecCCCCCCCCHHHHH------HHHHHhcC
Confidence            458999999999999999999999999999999876532  22222222222111   11111110      01111100


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHH-HHcCCcccCC-----CCeEEEEecCCceeChHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL-EKYSGRIEIP-----ENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  156 (413)
                      +.   .....+..   -.......++++..+|+++.......+. ..++. ...+     ......+..   ...+..+.
T Consensus        89 ~l---~d~~~v~~---l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg-~s~~~g~~~~~~R~~~~~---d~tG~~l~  158 (621)
T 2h88_A           89 WL---GDQDAIHY---MTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGG-QSLQFGKGGQAHRCCCVA---DRTGHSLL  158 (621)
T ss_dssp             TC---SCHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTT-CBSTTTTSCBCCCEECST---TCHHHHHH
T ss_pred             CC---CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCceeccccCc-ccccccCCCcceeEEEec---CCCHHHHH
Confidence            00   00000000   0001123455566677765432211110 11111 0000     000111111   11346788


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeE--EEEc-CCCc--EEEcCEEEEcCCCChHH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGV--TVVT-SNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~--~v~~-~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      ..|.+.+.+.|++|++++.|++|..  ++ +...  .+.. .+|+  .+.|+.||+|+|+++..
T Consensus       159 ~~L~~~~~~~gv~i~~~~~v~~Li~--~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          159 HTLYGRSLRYDTSYFVEYFALDLLM--EN-GECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             HHHHHHHTTSCCEEEETEEEEEEEE--ET-TEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHhCCCEEEEceEEEEEEE--EC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            9999999889999999999999987  63 2333  3332 4665  68999999999998853

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.38  E-value=6.4e-12  Score=117.75  Aligned_cols=58  Identities=12%  Similarity=-0.018  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +...+.+.|.+.+  .|++++++++|+++..  +  ++.+.|++.+|+++++|.||.|+|.+|.
T Consensus        97 ~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           97 SYDSIYGGLYELF--GPERYHTSKCLVGLSQ--D--SETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EHHHHHHHHHHHH--CSTTEETTCCEEEEEE--C--SSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CHHHHHHHHHHhC--CCcEEEcCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEECCCcchh
Confidence            3355666666654  5899999999999988  6  4568888888988999999999999884

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.37  E-value=2.2e-12  Score=122.84  Aligned_cols=61  Identities=15%  Similarity=0.037  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCCCcEEEcCEEEEcCCCChHHh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l  216 (413)
                      ..+.+.|.+.+++.|++++++++|++|..  +. ++..+.|++ +|++++||.||+|+|.|+..+
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~~l  303 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLY--KKDTGKFEGVKT-KLGTFKAPLVIADPTYFPEKC  303 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEE--ETTTTEEEEEEE-TTEEEECSCEEECGGGCGGGE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE--ECCCCeEEEEEE-CCeEEECCEEEECCCccchhh
Confidence            58899999999999999999999999988  61 234456766 467799999999999997543

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.37  E-value=1.2e-11  Score=121.37  Aligned_cols=188  Identities=12%  Similarity=0.043  Sum_probs=100.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      +.++||+|||||++|+++|+.|+++|  .+|+||||....++ .++...+++.. ..........     ...+.+....
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~-~s~~a~GGi~~-~~~~~ds~~~-----~~~d~~~~g~   75 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS-HTVAAEGGSAA-VAQDHDSFEY-----HFHDTVAGGD   75 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS-GGGGCCSCEEC-CCSTTCCHHH-----HHHHHHHHTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCC-hHHHhcCccEE-eCCCCCCHHH-----HHHHHHHhcC
Confidence            34689999999999999999999999  99999999865532 12222223221 1111111110     0001111000


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQT  161 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (413)
                      +.   .....+..   -.......++++..+|+++.......+ ...+++    .......+..   ......+...|.+
T Consensus        76 ~~---~d~~~v~~---~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg----~~~~r~~~~~---d~tg~~l~~~L~~  142 (602)
T 1kf6_A           76 WL---CEQDVVDY---FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGG----MKIERTWFAA---DKTGFHMLHTLFQ  142 (602)
T ss_dssp             TC---SCHHHHHH---HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTT----CSSCCEECST---TCHHHHHHHHHHH
T ss_pred             CC---CCHHHHHH---HHHHHHHHHHHHHHcCCCcccCCCCcccccccCC----ccCCeEEEcC---CCCHHHHHHHHHH
Confidence            00   00000000   000112344555666766432211000 000111    0001111111   1124678888999


Q ss_pred             HHHHCC-CEEEcCceEEEEEEecccCCCe--EEEE-cCCCc--EEEcCEEEEcCCCChHH
Q 015088          162 LAIKNG-AVLRDNMEVKTVLKVKDAVKGG--VTVV-TSNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       162 ~~~~~G-v~i~~~~~V~~i~~~~~~~~~~--~~v~-~~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      .+.+.| ++++++++|++|..  ++ +..  +.+. +.+|+  .+.|+.||+|+|+++..
T Consensus       143 ~~~~~gnv~i~~~~~v~~l~~--~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          143 TSLQFPQIQRFDEHFVLDILV--DD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHTTCTTEEEEETEEEEEEEE--ET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             HHHhCCCcEEEeCCEEEEEEE--eC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence            888888 99999999999987  63 232  3233 36776  68999999999998854

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.36  E-value=1e-11  Score=110.62  Aligned_cols=157  Identities=19%  Similarity=0.159  Sum_probs=94.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|+.|+++ |.+|+|||+....++...  ..++.+..                           
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~--~~~~~~~~---------------------------   88 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW--LGGQLFSA---------------------------   88 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT--CCSTTCCC---------------------------
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCcee--cCCcchHH---------------------------
Confidence            357999999999999999999997 999999999877643211  11111100                           


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                       ..       ....       ..+++...|+++..                ...+   +.    ..+...+...+.+.+.
T Consensus        89 -~~-------~~~~-------~~~~l~~~G~~~~~----------------~~~~---~~----~~~~~~~~~~l~~~~~  130 (284)
T 1rp0_A           89 -MI-------VRKP-------AHLFLDEIGVAYDE----------------QDTY---VV----VKHAALFTSTIMSKLL  130 (284)
T ss_dssp             -EE-------EETT-------THHHHHHHTCCCEE----------------CSSE---EE----ESCHHHHHHHHHHHHH
T ss_pred             -HH-------cCcH-------HHHHHHHcCCCccc----------------CCCE---EE----ecCHHHHHHHHHHHHH
Confidence             00       0000       01122223333211                0000   00    1134567777777776


Q ss_pred             H-CCCEEEcCceEEEEEEecccCCCeEEEEcC---------CC-----cEEEcCEEEEcCCCCh------HHhhhhhcCC
Q 015088          165 K-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---------NG-----EKFWGKKCVVTAGAWV------GKLVKRITGL  223 (413)
Q Consensus       165 ~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---------~g-----~~i~ad~VV~A~G~~s------~~l~~~~~g~  223 (413)
                      + .|++++++++|+++..  ++ +....+.+.         +|     .+++||.||+|+|..+      ..++..+ +.
T Consensus       131 ~~~gv~i~~~~~V~~i~~--~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~-g~  206 (284)
T 1rp0_A          131 ARPNVKLFNAVAAEDLIV--KG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSI-GM  206 (284)
T ss_dssp             TSTTEEEEETEEEEEEEE--ET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHT-TS
T ss_pred             hcCCCEEEcCcEEEEEEe--cC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhc-cC
Confidence            6 6999999999999987  52 222233321         22     4699999999999543      3444333 55


Q ss_pred             ccceeEEEEE
Q 015088          224 ELPIQAVETT  233 (413)
Q Consensus       224 ~~~~~~~~g~  233 (413)
                      ..++.+.++.
T Consensus       207 ~~~v~~~~g~  216 (284)
T 1rp0_A          207 IDHVPGMKAL  216 (284)
T ss_dssp             SSCCCCCEEE
T ss_pred             CCCcCCcCCc
Confidence            5677777774

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.35  E-value=2.4e-11  Score=116.13  Aligned_cols=174  Identities=15%  Similarity=0.109  Sum_probs=94.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      ||+|||||++|+++|+.|+++|++|+||||. ..+  +++....+.+..... ..........      .+....+..  
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~--g~s~~a~Ggi~~~~~~~d~~~~~~~d------~l~~g~~~~--   69 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDG--GSTPIAKGGVAASVGSDDSPELHAQD------TIRVGDGLC--   69 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTC--SSGGGCCSCEECCCSTTCCHHHHHHH------HHHHHTTCS--
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCC--chHHHHhCCeEEeCCCCCCHHHHHHH------HHHhcCCcC--
Confidence            7999999999999999999999999999998 432  222222222222221 1111111111      111110000  


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  167 (413)
                       ....+..   -........+++..+|+++...     ....+. ..   .....+.   +...+..+.+.|.+.+++.|
T Consensus        70 -d~~~v~~---~~~~~~~~i~~l~~~Gv~~~~~-----~~~~~g-~~---~~r~~~~---~d~~g~~l~~~L~~~~~~~g  133 (472)
T 2e5v_A           70 -DVKTVNY---VTSEAKNVIETFESWGFEFEED-----LRLEGG-HT---KRRVLHR---TDETGREIFNFLLKLAREEG  133 (472)
T ss_dssp             -CHHHHHH---HHHHHHHHHHHHHHTTCCCCSS-----CBCCTT-CS---SCCEECS---SSCHHHHHHHHHHHHHHHTT
T ss_pred             -CHHHHHH---HHHHHHHHHHHHHHcCCCCCcc-----cccccC-cC---cCcEEEe---CCCCHHHHHHHHHHHHHhCC
Confidence             0000000   0001123445556667654321     001111 00   0111111   22345678888988888889


Q ss_pred             CEEEcCceEEEEEEecccCCCeE--EEEcCCCcEEEcCEEEEcCCCChH
Q 015088          168 AVLRDNMEVKTVLKVKDAVKGGV--TVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++++++++| ++..  ++ +...  .+.+.+|+ +.+|.||+|+|+++.
T Consensus       134 v~i~~~~~v-~l~~--~~-~~v~Gv~v~~~~g~-~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          134 IPIIEDRLV-EIRV--KD-GKVTGFVTEKRGLV-EDVDKLVLATGGYSY  177 (472)
T ss_dssp             CCEECCCEE-EEEE--ET-TEEEEEEETTTEEE-CCCSEEEECCCCCGG
T ss_pred             CEEEECcEE-EEEE--eC-CEEEEEEEEeCCCe-EEeeeEEECCCCCcc
Confidence            999999999 9987  52 2332  33334454 889999999999874

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.35  E-value=2e-11  Score=115.13  Aligned_cols=65  Identities=18%  Similarity=0.156  Sum_probs=52.8

Q ss_pred             EecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          143 ATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      ..+.+|.   ..+.+.|.+.+++.|++++++++|++|..  ++++..+.|++.+|++++||.||.|++.+
T Consensus       249 ~yp~gG~---~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~--d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          249 IYPLYGL---GGIPEGFSRMCAINGGTFMLNKNVVDFVF--DDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             EEETTCT---THHHHHHHHHHHHC--CEESSCCEEEEEE--CTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             EEECCCH---HHHHHHHHHHHHHcCCEEEeCCeEEEEEE--ecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            3444443   68899999999999999999999999987  54456788999999889999999999987

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.34  E-value=1e-11  Score=117.68  Aligned_cols=42  Identities=45%  Similarity=0.594  Sum_probs=38.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +||+|||||++|+++|++|+++|++|+|||+++..||+..+.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   43 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR   43 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecce
Confidence            799999999999999999999999999999988887766543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.34  E-value=5.8e-12  Score=122.10  Aligned_cols=145  Identities=19%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHH-HcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLA-KRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~-~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .++||+|||||++|+++|+.|+ +.|++|+|||+++..||......        +                      .+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~--------y----------------------pg~   56 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNR--------Y----------------------PGA   56 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCC--------C----------------------TTC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccC--------C----------------------CCc
Confidence            4689999999999999999999 89999999999876653211000        0                      011


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+......+...                       +. .+.....+.    .          ....+...+...+.+.++
T Consensus        57 ~~d~~s~~~~~~-----------------------~~-~~~~~~~~~----~----------~~~~~~~ei~~~l~~~~~   98 (540)
T 3gwf_A           57 LSDTESHLYRFS-----------------------FD-RDLLQESTW----K----------TTYITQPEILEYLEDVVD   98 (540)
T ss_dssp             EEEEEGGGSSCC-----------------------SC-HHHHHHCCC----S----------BSEEEHHHHHHHHHHHHH
T ss_pred             eecCCcceeeec-----------------------cc-cccccCCCC----c----------ccCCCHHHHHHHHHHHHH
Confidence            111111110000                       00 001111111    1          123345677888888888


Q ss_pred             HCCC--EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          165 KNGA--VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       165 ~~Gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      +.|+  +++++++|+++..  +++...|.|++.+|+++++|+||+|+|.++....+.+
T Consensus        99 ~~g~~~~i~~~~~V~~i~~--~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i  154 (540)
T 3gwf_A           99 RFDLRRHFKFGTEVTSALY--LDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNL  154 (540)
T ss_dssp             HTTCGGGEEESCCEEEEEE--ETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCC
T ss_pred             HcCCcceeEeccEEEEEEE--eCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCC
Confidence            8888  8999999999988  6444689999999988999999999998775544433

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.34  E-value=2e-12  Score=125.57  Aligned_cols=145  Identities=17%  Similarity=0.162  Sum_probs=94.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|++.|++|+|||++...||.-......+                              ..
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg------------------------------~~   69 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPG------------------------------AR   69 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTT------------------------------CB
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCC------------------------------ce
Confidence            468999999999999999999999999999999876653211000000                              00


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      +..+...+                    ...   +. .+.......              .........+...+.+.+++
T Consensus        70 ~dv~s~~y--------------------~~~---f~-~~~~~~~~~--------------~~~~~~~~ei~~yl~~~~~~  111 (549)
T 4ap3_A           70 CDVESIDY--------------------SYS---FS-PELEQEWNW--------------SEKYATQPEILAYLEHVADR  111 (549)
T ss_dssp             CSSCTTTS--------------------SCC---SC-HHHHHHCCC--------------SSSSCBHHHHHHHHHHHHHH
T ss_pred             eCCCchhc--------------------ccc---cc-cccccCCCC--------------ccCCCCHHHHHHHHHHHHHH
Confidence            00000000                    000   00 000000010              01223446777888888888


Q ss_pred             CCC--EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          166 NGA--VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       166 ~Gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .|+  +++++++|+++..  +++...|.|++.+|+++++|+||+|+|.++....+.+
T Consensus       112 ~g~~~~i~~~~~V~~i~~--~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i  166 (549)
T 4ap3_A          112 FDLRRDIRFDTRVTSAVL--DEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAF  166 (549)
T ss_dssp             TTCGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCC
T ss_pred             cCCCccEEECCEEEEEEE--cCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence            887  8999999999987  6444689999999988999999999997765444433

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.33  E-value=1.3e-11  Score=121.79  Aligned_cols=188  Identities=12%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc------CCcEEEEcccCCCCCCCcccCCCc-eeecccCCCChHHHHHHHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR------GQKTLLLEQFDFLHHRGSSHGESR-TIRATYPEDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~------g~~V~liE~~~~~gg~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~   78 (413)
                      .++||||||||++|++||+.|+++      |.+|+||||....++  ++...++ .+.........       ...+...
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s--~s~AqG~~gi~a~l~~ds~-------e~~~~~~   91 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS--GAVAQGLSAINTYLGDNNA-------DDYVRMV   91 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC--STTTTCEEEECCCCTTSCH-------HHHHHHH
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC--cccccCcchheeecCCCCH-------HHHHHHH
Confidence            468999999999999999999998      999999999876532  2222220 22222211111       1111111


Q ss_pred             HHH-hCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCcccc-CH-----HHHHHHcCCcccCCCCeEEEEecC---Cc
Q 015088           79 QSE-IGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVL-DC-----RQVLEKYSGRIEIPENWVGVATEL---GG  148 (413)
Q Consensus        79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~  148 (413)
                      ... .+..   ....+..   -.......+.++..+|+++... ..     ......++. +....   +.....   ..
T Consensus        92 ~~~~~gl~---d~~~v~~---l~~~a~~~i~~L~~~Gv~f~~~~~~G~~~~g~~~~~fg~-~~~~g---g~~~~r~~~~~  161 (662)
T 3gyx_A           92 RTDLMGLV---REDLIYD---LGRHVDDSVHLFEEWGLPVWIKDEHGHNLDGAQAKAAGK-SLRNG---DKPVRSGRWQI  161 (662)
T ss_dssp             HHHTTTCC---CHHHHHH---HHHHHHHHHHHHHHHTCCBCEECSSSCEECHHHHHHHTC-CTTTT---CCBCCSSTTCE
T ss_pred             HHhcCCCc---cHHHHHH---HHHHHHHHHHHHHHcCCCceecCCCCccccchhhhcccc-ccccC---ccccccceecc
Confidence            111 0100   0000000   0001123344555667665332 10     111122222 11000   000000   12


Q ss_pred             eeChHHHHHHHHHHHHHC--CCEEEcCceEEEEEEecccC--CCeEEEE---cCCCc--EEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKN--GAVLRDNMEVKTVLKVKDAV--KGGVTVV---TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~--Gv~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .+.+..+.+.|.+.+++.  |++|+.++.|++|..  +++  +....|.   ..+|+  .+.|+.||+|||+++.
T Consensus       162 ~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~--~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          162 MINGESYKVIVAEAAKNALGQDRIIERIFIVKLLL--DKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             EEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEE--CSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEE--eCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence            234567888888888887  999999999999987  643  1333332   24554  6899999999999774

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.32  E-value=6.5e-12  Score=121.91  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||||++|+++|+.|++.|++|+|||+++..||.-..        ..++.                      .
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~--------~~yPg----------------------~   56 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW--------NRYPG----------------------C   56 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH--------CCCTT----------------------C
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc--------CCCCc----------------------e
Confidence            34689999999999999999999999999999998776532100        00110                      0


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+            +...  ..+...-....             ... .          ...........+...+...++
T Consensus        57 ~~------------d~~~--~~y~~~f~~~~-------------~~~-~----------~~~~~~~~~~ei~~yl~~~~~   98 (545)
T 3uox_A           57 RL------------DTES--YAYGYFALKGI-------------IPE-W----------EWSENFASQPEMLRYVNRAAD   98 (545)
T ss_dssp             BC------------SSCH--HHHCHHHHTTS-------------STT-C----------CCSBSSCBHHHHHHHHHHHHH
T ss_pred             ee------------cCch--hhcccccCccc-------------ccC-C----------CccccCCCHHHHHHHHHHHHH
Confidence            00            0000  00000000000             000 0          001122344667777888888


Q ss_pred             HCCC--EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcC
Q 015088          165 KNGA--VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITG  222 (413)
Q Consensus       165 ~~Gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g  222 (413)
                      +.|+  .++++++|+++..  +++...|.|++.+|+++++|+||+|+|.++....+.+.|
T Consensus        99 ~~~l~~~i~~~~~V~~~~~--~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG  156 (545)
T 3uox_A           99 AMDVRKHYRFNTRVTAARY--VENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKG  156 (545)
T ss_dssp             HHTCGGGEECSCCEEEEEE--EGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTT
T ss_pred             HcCCcCcEEECCEEEEEEE--eCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCC
Confidence            8787  8999999999987  644578999999998899999999999877555444433

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.31  E-value=1.9e-11  Score=117.40  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ...+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQS--T--ENCYNVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEE--C--SSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEe--e--CCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence            356778888889999999999999999988  6  4567888888888999999999997554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.30  E-value=2.5e-11  Score=110.96  Aligned_cols=119  Identities=21%  Similarity=0.289  Sum_probs=85.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||||++|+++|+.|+++|++|+|||++...++....         .++.                       
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~---------~~~~-----------------------   50 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA---------LYPE-----------------------   50 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH---------TCTT-----------------------
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec---------cCCC-----------------------
Confidence            34689999999999999999999999999999998655311000         0000                       


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      ....                         .              .+. +              ..+.+..+...+.+.+.
T Consensus        51 ~~~~-------------------------~--------------~~~-~--------------~~~~~~~~~~~l~~~~~   76 (335)
T 2zbw_A           51 KYIY-------------------------D--------------VAG-F--------------PKVYAKDLVKGLVEQVA   76 (335)
T ss_dssp             SEEC-------------------------C--------------STT-C--------------SSEEHHHHHHHHHHHHG
T ss_pred             ceee-------------------------c--------------cCC-C--------------CCCCHHHHHHHHHHHHH
Confidence            0000                         0              000 0              01234567777778888


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.+++++++++|+++..  +  ++.+.|.+.+|+++++|+||+|+|..+
T Consensus        77 ~~~~~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           77 PFNPVYSLGERAETLER--E--GDLFKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             GGCCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred             HcCCEEEeCCEEEEEEE--C--CCEEEEEECCCCEEEeCEEEECCCCCC
Confidence            88999999999999988  6  347888888887799999999999853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.30  E-value=4.5e-11  Score=115.86  Aligned_cols=69  Identities=20%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCe--EEEEcCCCc-EEEcCEEEEcCCCChHH--hhhhhcCC
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG--VTVVTSNGE-KFWGKKCVVTAGAWVGK--LVKRITGL  223 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~--~~v~~~~g~-~i~ad~VV~A~G~~s~~--l~~~~~g~  223 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  ++++..  +.|++.+|+ ++.+|.||+|+|.+.+.  ++..+ |+
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~-gl  327 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEE--DANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKIL-GL  327 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEE--CTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHH-TC
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEE--cCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHc-CC
Confidence            457788899999999999999999999987  532211  678888886 79999999999987753  55554 54

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.30  E-value=2.7e-11  Score=117.96  Aligned_cols=66  Identities=14%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHCC--CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          153 TKAVSMFQTLAIKNG--AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ..+.+.+...+++.+  .+++++++|+++..  +++.+.|.|++.+|++++||+||+|+|.++....+.+
T Consensus        94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~--~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i  161 (542)
T 1w4x_A           94 PEILRYINFVADKFDLRSGITFHTTVTAAAF--DEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNF  161 (542)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCceEEcCcEEEEEEE--cCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCC
Confidence            456666666666665  67999999999987  6434679999989988999999999999876554433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.29  E-value=3.6e-11  Score=112.68  Aligned_cols=59  Identities=8%  Similarity=-0.009  Sum_probs=47.4

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ++...+.+.|.+.+.  +++++++++|++++.  +  ++.+.|++.+|+++++|.||.|+|.+|.
T Consensus       125 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~--~--~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          125 INRNDLRAILLNSLE--NDTVIWDRKLVMLEP--G--KKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             ECHHHHHHHHHHTSC--TTSEEESCCEEEEEE--C--SSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             ECHHHHHHHHHhhcC--CCEEEECCEEEEEEE--C--CCEEEEEECCCcEEecCEEEECCCcchh
Confidence            455667777776553  378999999999988  6  4568888888878999999999999873

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.28  E-value=1e-11  Score=113.34  Aligned_cols=117  Identities=23%  Similarity=0.348  Sum_probs=85.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.+..||..         ...++.                      ..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~---------~~~~~~----------------------~~   54 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQL---------SALYPE----------------------KY   54 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH---------HHHCTT----------------------SE
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCcee---------hhcCCC----------------------ce
Confidence            46899999999999999999999999999999987653210         000000                      00


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                       .                         ..              ++. +  +            .+.+..+...+.+.+++
T Consensus        55 -~-------------------------~~--------------~~~-~--~------------~~~~~~~~~~~~~~~~~   79 (332)
T 3lzw_A           55 -I-------------------------YD--------------VAG-F--P------------KIRAQELINNLKEQMAK   79 (332)
T ss_dssp             -E-------------------------CC--------------STT-C--S------------SEEHHHHHHHHHHHHTT
T ss_pred             -E-------------------------ec--------------cCC-C--C------------CCCHHHHHHHHHHHHHH
Confidence             0                         00              000 0  0            12346777888888888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      .|++++++++|+++..  .+ ++.+.|.+.+|+ +.+|+||+|+|..
T Consensus        80 ~~~~~~~~~~v~~i~~--~~-~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           80 FDQTICLEQAVESVEK--QA-DGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             SCCEEECSCCEEEEEE--CT-TSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             hCCcEEccCEEEEEEE--CC-CCcEEEEECCCE-EEeCEEEECCCCC
Confidence            8999999999999988  62 247889998887 9999999999984

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.28  E-value=6.2e-11  Score=111.53  Aligned_cols=61  Identities=13%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             eeChHHHHHHHHHHHHHC-C-CEEEcCceEEEEEEecccCCCeEEEEcCC---C--cEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKN-G-AVLRDNMEVKTVLKVKDAVKGGVTVVTSN---G--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~VV~A~G~~s~  214 (413)
                      .++...+.+.|.+.+.+. | ++++++++|+++..  +   +++.+.+.+   |  ++++||.||.|+|.+|.
T Consensus       103 ~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~--~---~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~  170 (410)
T 3c96_A          103 SIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE--R---DGRVLIGARDGHGKPQALGADVLVGADGIHSA  170 (410)
T ss_dssp             EEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE--E---TTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             eeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec--C---CccEEEEecCCCCCceEEecCEEEECCCccch
Confidence            456678888888888763 6 58999999999976  4   345565543   6  47999999999999884

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.28  E-value=6.1e-11  Score=98.05  Aligned_cols=65  Identities=22%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      .+..+.+.+.+.+++.|++++++ +|+++..  +  ++.+.+++++| ++++|.||+|+|.++ .+.+.+ ++
T Consensus        54 ~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~--~--~~~~~v~~~~g-~i~ad~vI~A~G~~~-~~~~~~-g~  118 (180)
T 2ywl_A           54 SGEELLRRLEAHARRYGAEVRPG-VVKGVRD--M--GGVFEVETEEG-VEKAERLLLCTHKDP-TLPSLL-GL  118 (180)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CCCEEEE--C--SSSEEEECSSC-EEEEEEEEECCTTCC-HHHHHH-TC
T ss_pred             CHHHHHHHHHHHHHHcCCEEEeC-EEEEEEE--c--CCEEEEEECCC-EEEECEEEECCCCCC-CccccC-CC
Confidence            34577888888899999999999 9999988  6  45688888888 699999999999987 455554 54

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.28  E-value=5.8e-11  Score=114.64  Aligned_cols=57  Identities=21%  Similarity=0.239  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.|.+.+.+.| ++|+++++|++|..  +  ++.+.|++.+|++++||+||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~--~--~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVN--E--RDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEE--C--SSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEE--c--CCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            577888888888888 99999999999988  6  456888888887799999999999754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.28  E-value=9.7e-12  Score=120.30  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             eeChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          149 VIKPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .++...+...+.+.+++ .|++++ +++|++|..  ++ +..+.|.+.+|.++.|+.||+|+|.++
T Consensus       119 ~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~--e~-g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          119 QADKKRYREYMKKVCENQENLYIK-QEEVVDIIV--KN-NQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE--SS-SBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe--cC-CEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            45677888999999988 599995 789999987  62 345678888898899999999999874

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.28  E-value=3.7e-11  Score=116.65  Aligned_cols=45  Identities=38%  Similarity=0.467  Sum_probs=40.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      .++||+|||||++|++||++|+++|++|+|+|+++..||+..+..
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~   47 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLR   47 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecc
Confidence            467999999999999999999999999999999999988766544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.27  E-value=3.9e-11  Score=110.84  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=85.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+....++...                                ......
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~--------------------------------~~~~~~   60 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA--------------------------------ALYPEK   60 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH--------------------------------HTCTTS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc--------------------------------ccCCCc
Confidence            368999999999999999999999999999999765531100                                000000


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ..                         +.              .+. +  +            .+++..+.+.+.+.+.+
T Consensus        61 ~~-------------------------~~--------------~~~-~--~------------~~~~~~~~~~l~~~~~~   86 (360)
T 3ab1_A           61 HI-------------------------YD--------------VAG-F--P------------EVPAIDLVESLWAQAER   86 (360)
T ss_dssp             EE-------------------------CC--------------STT-C--S------------SEEHHHHHHHHHHHHHT
T ss_pred             cc-------------------------cc--------------CCC-C--C------------CCCHHHHHHHHHHHHHH
Confidence            00                         00              000 0  0            12446677778888888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .|++++++++|+++..  ++ ++.+.|.+.+|+++++|+||+|+|..+
T Consensus        87 ~~~~~~~~~~v~~i~~--~~-~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           87 YNPDVVLNETVTKYTK--LD-DGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             TCCEEECSCCEEEEEE--CT-TSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             hCCEEEcCCEEEEEEE--CC-CceEEEEECCCcEEEeeEEEEccCCCc
Confidence            8999999999999987  62 247888888887899999999999854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.27  E-value=2.9e-11  Score=109.77  Aligned_cols=58  Identities=12%  Similarity=0.094  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+..+...+.+.+++.|+++++ ++|+++..  +  ++.+.+.+.+|.++.+|.||+|+|...
T Consensus        68 ~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           68 QASDMIKVFNKHIEKYEVPVLL-DIVEKIEN--R--GDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             EHHHHHHHHHHHHHTTTCCEEE-SCEEEEEE--C----CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEE-EEEEEEEe--c--CCEEEEEECCCCEEEcCEEEECcCCCC
Confidence            3456777788888888999998 89999988  6  467888888888899999999999863

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.27  E-value=4.5e-11  Score=116.14  Aligned_cols=61  Identities=20%  Similarity=0.210  Sum_probs=50.5

Q ss_pred             eeChHHHHHHHHHHHHH-CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          149 VIKPTKAVSMFQTLAIK-NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .++...+...+.+.+++ .|++++ +++|+++..  ++ +..+.|.+.+|.+++||.||+|+|.++
T Consensus       120 ~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~--e~-g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          120 QADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV--EN-DRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--SS-SBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe--cC-CEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            56777888999999988 699995 789999987  52 345678888888899999999999975

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.26  E-value=1.9e-11  Score=113.30  Aligned_cols=60  Identities=17%  Similarity=0.165  Sum_probs=49.8

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.+..+...+.+.+++.|++++++++|+++..  +  ++.+.|.+.+++ +.+|+||+|+|.++.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~-~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISA--D--DAYYTIATTTET-YHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEE--C--SSSEEEEESSCC-EEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE--C--CCeEEEEeCCCE-EEeCEEEECCCCCCc
Confidence            34567777888888889999999999999988  6  356888887775 999999999999763

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.26  E-value=3.2e-11  Score=115.92  Aligned_cols=47  Identities=34%  Similarity=0.445  Sum_probs=40.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGES   52 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~   52 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+++..||+..+....
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~   61 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA   61 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccC
Confidence            45899999999999999999999999999999999998887765433

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.25  E-value=7.5e-11  Score=101.69  Aligned_cols=61  Identities=20%  Similarity=0.141  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHH
Q 015088          151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~  215 (413)
                      +...+.+.+.+.+++. |++++ +++|+++..  ++ +..+.|.+.+|++++||.||+|+|.++..
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~--~~-~~v~~v~~~~g~~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLL--EG-NRVVGVRTWEGPPARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--ET-TEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE--eC-CEEEEEEECCCCEEECCEEEECCCCChhh
Confidence            4467788888888887 99998 679999987  62 24456788888779999999999998753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.25  E-value=5.2e-11  Score=112.03  Aligned_cols=56  Identities=13%  Similarity=0.058  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.|.+.   .+.+|+++++|++++.  .+ ++.+.|++.+|++++||.||-|.|.+|.
T Consensus       112 ~~L~~~L~~~---~~~~v~~~~~v~~~~~--~~-~~~v~v~~~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          112 TELKEILNKG---LANTIQWNKTFVRYEH--IE-NGGIKIFFADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             HHHHHHHHTT---CTTTEECSCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHHhh---ccceEEEEEEEEeeeE--cC-CCeEEEEECCCCEEEeeEEEECCCCCcc
Confidence            4444444432   3567999999999987  53 3578899999999999999999999884

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.25  E-value=1.1e-10  Score=115.55  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=97.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHH---H-cCCcEEEEcccCCCCCCCcccCCCceeecc--cC-------CCChHHHHHHHH
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLA---K-RGQKTLLLEQFDFLHHRGSSHGESRTIRAT--YP-------EDYYHPMVLESC   72 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~---~-~g~~V~liE~~~~~gg~~~s~~~~~~~~~~--~~-------~~~~~~l~~~~~   72 (413)
                      .++||+|||||++|+++|+.|+   + +|.+|+||||....++.  +. ..+.....  ..       ......      
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~~s~--~~-a~G~~~~~~~~~~~~~~g~~ds~~~------   91 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG--AV-AQGLSAINTYIDLTGRSERQNTLED------   91 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS--TT-TTCEEEESCCCCSSSSBSCCCCHHH------
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCCCCc--ce-ecccccccchhhHHHhcCCCCCHHH------
Confidence            3589999999999999999999   6 89999999998764321  11 12221111  10       011111      


Q ss_pred             HHHHHHHHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeCh
Q 015088           73 LLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKP  152 (413)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (413)
                       .+...... +... .....+..   -........+++..+|+++.....       .. +......       ...+++
T Consensus        92 -~~~~~~~~-g~~l-~d~~~v~~---~~~~~~~~i~~l~~~Gv~f~~~~~-------g~-~~~~~~~-------~~~~~g  150 (643)
T 1jnr_A           92 -YVRYVTLD-MMGL-AREDLVAD---YARHVDGTVHLFEKWGLPIWKTPD-------GK-YVREGQW-------QIMIHG  150 (643)
T ss_dssp             -HHHHHHHH-TTTC-CCHHHHHH---HHHHHHHHHHHHHHTTCCBCBCTT-------SC-BCBSSSS-------CEEEEE
T ss_pred             -HHHHHHHH-hcCc-CcHHHHHH---HHHHHHHHHHHHHHcCCcceeCCC-------CC-ccCCCcc-------ccCCCc
Confidence             11111111 0000 00000000   001112345556666766432110       00 0000000       012344


Q ss_pred             HHHHHHHHHHHHHC-CC-EEEcCceEEEEEEecccC--CCeEEEE---cCCCc--EEEcCEEEEcCCCChHH
Q 015088          153 TKAVSMFQTLAIKN-GA-VLRDNMEVKTVLKVKDAV--KGGVTVV---TSNGE--KFWGKKCVVTAGAWVGK  215 (413)
Q Consensus       153 ~~~~~~l~~~~~~~-Gv-~i~~~~~V~~i~~~~~~~--~~~~~v~---~~~g~--~i~ad~VV~A~G~~s~~  215 (413)
                      ..+.+.|.+.+++. |+ +|++++.|++|..  +++  +....|.   ..+|+  .+.|+.||+|+|+++..
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~--~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~~  220 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLK--DNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATLL  220 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEE--CTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEE--cCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccccc
Confidence            56778888888887 99 9999999999987  633  1333333   35565  68999999999998853

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.24  E-value=1e-10  Score=113.53  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=49.4

Q ss_pred             eeChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .++...+...+.+.+++. |++++ +.+|+++..  ++ +....|.+.+|++++||.||+|+|.|+.
T Consensus       113 ~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~--d~-g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          113 QADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSA--NS-GKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--ET-TEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEe--cC-CEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            567778889999988884 99996 568999987  52 2344488888888999999999998854

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.23  E-value=1e-10  Score=112.41  Aligned_cols=135  Identities=16%  Similarity=0.105  Sum_probs=87.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.+..+...       ... ..         ......+.    ..+..
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~-------~~~-~~---------~~~~~~l~----~~g~~  149 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHN-------VLH-LW---------PFTIHDLR----ALGAK  149 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCC-------EEE-CC---------HHHHHHHH----TTTHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCC-------ccc-CC---------hhHHHHHH----HcCCc
Confidence            46899999999999999999999999999999987653210       000 00         00111110    11100


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                            ..   .                +. +....         -..++...+...|.+.+++
T Consensus       150 ----------------------~~---~----------------~~-~~~~~---------~~~~~~~~l~~~L~~~~~~  178 (497)
T 2bry_A          150 ----------------------KF---Y----------------GR-FCTGT---------LDHISIRQLQLLLLKVALL  178 (497)
T ss_dssp             ----------------------HH---C----------------TT-TTCTT---------CCEEEHHHHHHHHHHHHHH
T ss_pred             ----------------------cc---c----------------cc-ccccc---------cccCCHHHHHHHHHHHHHh
Confidence                                  00   0                00 00000         0123446788888898988


Q ss_pred             CCCEEEcCceEEEEEEeccc-CCCeEEEEc--C-CC--cEEEcCEEEEcCCCChH
Q 015088          166 NGAVLRDNMEVKTVLKVKDA-VKGGVTVVT--S-NG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~--~-~g--~~i~ad~VV~A~G~~s~  214 (413)
                      .|++++++++|+++..  ++ +++.+.|.+  . +|  +++++|.||+|+|.++.
T Consensus       179 ~gv~v~~~~~v~~i~~--~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          179 LGVEIHWGVKFTGLQP--PPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             TTCEEEESCEEEEEEC--CCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred             CCCEEEeCCEEEEEEE--ecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence            9999999999999986  52 124556655  4 66  36899999999999873

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.23  E-value=7.4e-11  Score=112.24  Aligned_cols=65  Identities=12%  Similarity=0.042  Sum_probs=50.2

Q ss_pred             eChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC---Cc---EEEcCEEEEcCCCChHHhhh
Q 015088          150 IKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN---GE---KFWGKKCVVTAGAWVGKLVK  218 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~---g~---~i~ad~VV~A~G~~s~~l~~  218 (413)
                      .....+.+.+.+.+++.+..++++++|+++..  .  ++.|.|++.+   |+   ++.+|.||+|+|.++.+..+
T Consensus       112 ~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~--~--~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          112 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEK--K--DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEE--E--TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBC
T ss_pred             CCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEe--C--CCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCC
Confidence            34467777888887777888999999999987  6  4567777654   65   69999999999998754433

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.22  E-value=8.6e-11  Score=105.85  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ++|||+|||||++|++||++|+++|++|+|||++..
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~   40 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN   40 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            469999999999999999999999999999998754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.22  E-value=5.5e-10  Score=105.55  Aligned_cols=58  Identities=17%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.|.+.+++.|++|+++++|++|..  ++ +..+.|.+ +|++++||+||+|+|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~--~~-~~v~~v~~-~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIM--EN-GKVVGVKS-EGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEE--ET-TEEEEEEE-TTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEE--eC-CEEEEEEE-CCeEEECCEEEECCCCCcc
Confidence            68899999999999999999999999987  62 23333554 6777999999999999975

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.19  E-value=1.7e-10  Score=104.29  Aligned_cols=118  Identities=19%  Similarity=0.311  Sum_probs=79.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      +.|||+|||||+||++||.+|+++|++|+|+|+...++...     .+.+...                          .
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~-----~G~~~~~--------------------------~   51 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAA-----GGQLTTT--------------------------T   51 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCT-----TCGGGGS--------------------------S
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCccc-----CCCcCCh--------------------------H
Confidence            46999999999999999999999999999999976542110     0111000                          0


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                      ..                         .+              +|. +  +.           .+.+..+...+.+.+++
T Consensus        52 ~i-------------------------~~--------------~~g-~--~~-----------~i~~~~l~~~~~~~~~~   78 (314)
T 4a5l_A           52 II-------------------------EN--------------FPG-F--PN-----------GIDGNELMMNMRTQSEK   78 (314)
T ss_dssp             EE-------------------------CC--------------STT-C--TT-----------CEEHHHHHHHHHHHHHH
T ss_pred             Hh-------------------------hh--------------ccC-C--cc-----------cCCHHHHHHHHHHHHhh
Confidence            00                         00              011 0  00           12345677777888888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      .+.++... .|..+..  .  .....+.+.++.++++|.||+|||..
T Consensus        79 ~~~~~~~~-~v~~~~~--~--~~~~~~~~~~~~~~~~~~liiATG~~  120 (314)
T 4a5l_A           79 YGTTIITE-TIDHVDF--S--TQPFKLFTEEGKEVLTKSVIIATGAT  120 (314)
T ss_dssp             TTCEEECC-CEEEEEC--S--SSSEEEEETTCCEEEEEEEEECCCEE
T ss_pred             cCcEEEEe-EEEEeec--C--CCceEEEECCCeEEEEeEEEEccccc
Confidence            89998854 5656555  4  35566777788889999999999974

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.19  E-value=1.2e-10  Score=111.28  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-cCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  ++ ++.+.|. +.+|+ +.+|.||+|+|...+
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~-~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSA--DA-DGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--CT-TSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEE--cC-CCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            357788889999999999999999999987  62 2446788 88898 999999999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.19  E-value=1e-10  Score=105.72  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ++..+.+.+.+.+.+.|++++. ++|+++..  +  ++.+.+.+.+|+++++|.||+|+|.++
T Consensus        57 ~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           57 SGLDFMQPWQEQCFRFGLKHEM-TAVQRVSK--K--DSHFVILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             CHHHHHHHHHHHHHTTSCEEEC-SCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEE-EEEEEEEE--c--CCEEEEEEcCCCEEECCEEEECCCCCC
Confidence            4456777777888888999997 78999987  6  456778777887899999999999754

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.19  E-value=5.1e-10  Score=106.70  Aligned_cols=45  Identities=33%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      .++||+|||||++|+++|++|+++|++|+|+|++...||+..+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~   48 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDT   48 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccc
Confidence            468999999999999999999999999999999998887765543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.18  E-value=1.1e-10  Score=106.71  Aligned_cols=58  Identities=14%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEc---CCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVT---SNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~---~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+..+...+.+.+++.|+++++++ |+++..  +  ++.+.+.+   .++.++.+|.||+|+|...
T Consensus        82 ~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~--~--~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           82 TGSELMDRMREQSTKFGTEIITET-VSKVDL--S--SKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             EHHHHHHHHHHHHHHTTCEEECSC-EEEEEC--S--SSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEEeE-EEEEEE--c--CCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            346777888888889999999988 999987  6  46777776   3566799999999999853

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.18  E-value=2.3e-10  Score=108.18  Aligned_cols=46  Identities=24%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s~~   50 (413)
                      ..++||+|||||++|+++|++|+++| ++|+|+|+++..||+..+..
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~   50 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN   50 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC
Confidence            35689999999999999999999999 89999999999988776654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.17  E-value=1.4e-09  Score=102.40  Aligned_cols=71  Identities=14%  Similarity=0.086  Sum_probs=56.8

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      .+..+.+.+.+.+++.|++++++++|+++..  ++ +....|.+.+|+++.+|.||+|+|...+ .++..+ ++..
T Consensus       192 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~  263 (415)
T 3lxd_A          192 AGEALSEFYQAEHRAHGVDLRTGAAMDCIEG--DG-TKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISA-GASG  263 (415)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEETCCEEEEEE--SS-SBEEEEEESSSCEEECSEEEECSCCEESCHHHHHT-TCCC
T ss_pred             cCHHHHHHHHHHHHhCCCEEEECCEEEEEEe--cC-CcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhC-CCCc
Confidence            3567888899999999999999999999987  62 2445788889988999999999998765 466554 5543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.16  E-value=1.6e-10  Score=110.30  Aligned_cols=71  Identities=17%  Similarity=0.064  Sum_probs=53.1

Q ss_pred             eChHHHHHHHHHHHHHCCCE--EEcCceEEEEEEecccCCCeEEEEcCC---C--cEEEcCEEEEcCCCChHHhhhhhcC
Q 015088          150 IKPTKAVSMFQTLAIKNGAV--LRDNMEVKTVLKVKDAVKGGVTVVTSN---G--EKFWGKKCVVTAGAWVGKLVKRITG  222 (413)
Q Consensus       150 ~~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~~~~~~~v~~~~---g--~~i~ad~VV~A~G~~s~~l~~~~~g  222 (413)
                      .....+.+.+.+.+++.|++  ++++++|+++..  .++.+.|.|++.+   |  .++.+|.||+|+|.++.+..+.+.|
T Consensus        98 ~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~--~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG  175 (464)
T 2xve_A           98 PPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEF--NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEG  175 (464)
T ss_dssp             CBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEE--ETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBCCCCCBT
T ss_pred             CCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEE--cCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCccCCCCC
Confidence            35567888888888888988  999999999988  6333477777654   4  4689999999999876554444334

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.16  E-value=1.3e-10  Score=106.17  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ++..+...+.+.+++.|++++.++ |+++..  +  ++.+.|.+ +|+++++|.||+|+|.++
T Consensus        68 ~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~--~--~~~~~v~~-~~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           68 LGVELTDKFRKQSERFGTTIFTET-VTKVDF--S--SKPFKLFT-DSKAILADAVILAIGAVA  124 (333)
T ss_dssp             EHHHHHHHHHHHHHHTTCEEECCC-CCEEEC--S--SSSEEEEC-SSEEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEeE-EEEEEE--c--CCEEEEEE-CCcEEEcCEEEECCCCCc
Confidence            345677778888888999999886 889877  5  45677887 677799999999999875

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.15  E-value=3.6e-10  Score=101.58  Aligned_cols=38  Identities=32%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg   44 (413)
                      .+||+|||||++|+++|++|+++  |++|+|||+....++
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG  118 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG  118 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence            58999999999999999999997  999999999877643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.15  E-value=3.3e-10  Score=102.71  Aligned_cols=55  Identities=22%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|+++++ .+|+++..  +  ++.+.|.+ ++.++++|+||+|+|.+.
T Consensus        72 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~--~--~~~~~v~~-~~~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           72 SELAKLFADHAANYAKIREG-VEVRSIKK--T--QGGFDIET-NDDTYHAKYVIITTGTTH  126 (319)
T ss_dssp             HHHHHHHHHHHHTTSEEEET-CCEEEEEE--E--TTEEEEEE-SSSEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-eeEEEEEE--e--CCEEEEEE-CCCEEEeCEEEECCCCCc
Confidence            45666677778888999997 78999987  5  45677777 455699999999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.14  E-value=2.2e-10  Score=104.21  Aligned_cols=117  Identities=23%  Similarity=0.266  Sum_probs=80.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ..++||+|||||++|+++|+.|+++|++|+|||+.. .|+.....   .                               
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~---~-------------------------------   50 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWS---E-------------------------------   50 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGC---S-------------------------------
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccc---c-------------------------------
Confidence            456899999999999999999999999999999983 32211000   0                               


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .       +                        .         .++. +  +           ..+....+.+.+.+.++
T Consensus        51 ~-------~------------------------~---------~~~~-~--~-----------~~~~~~~~~~~l~~~~~   76 (325)
T 2q7v_A           51 E-------V------------------------E---------NFPG-F--P-----------EPIAGMELAQRMHQQAE   76 (325)
T ss_dssp             C-------B------------------------C---------CSTT-C--S-----------SCBCHHHHHHHHHHHHH
T ss_pred             c-------c------------------------c---------cCCC-C--C-----------CCCCHHHHHHHHHHHHH
Confidence            0       0                        0         0000 0  0           01233566777778888


Q ss_pred             HCCCEEEcCceEEEEEEeccc-CCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          165 KNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.|++++. .+|+++..  +. ++..+.+.+.+|+++++|+||+|+|.+.
T Consensus        77 ~~gv~~~~-~~v~~i~~--~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           77 KFGAKVEM-DEVQGVQH--DATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HTTCEEEE-CCEEEEEE--CTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             HcCCEEEe-eeEEEEEe--ccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            88999987 68999977  51 1122667777777899999999999854

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.13  E-value=3.7e-10  Score=113.39  Aligned_cols=42  Identities=38%  Similarity=0.387  Sum_probs=37.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      .+||+|||||++|+++|+.|++.|++|+|+|+....||+..+
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T  377 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWD  377 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeee
Confidence            479999999999999999999999999999999888775443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.13  E-value=3.6e-10  Score=101.24  Aligned_cols=58  Identities=10%  Similarity=0.047  Sum_probs=45.7

Q ss_pred             ChHHHHHHHHHHHHHC-CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKN-GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+..+...+.+.+.+. +++++ +++|+++..  +  ++.+.+.+.+|+++++|.||+|+|...
T Consensus        54 ~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~--~--~~~~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           54 APGEIIAEARRQIERYPTIHWV-EGRVTDAKG--S--FGEFIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             CHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEE--E--TTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred             CHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEE--c--CCeEEEEECCCCEEEcCEEEECCCCCC
Confidence            3356667777777776 67776 469999988  6  467889998888899999999999854

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.12  E-value=3.4e-10  Score=108.49  Aligned_cols=45  Identities=27%  Similarity=0.230  Sum_probs=39.9

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCcc
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s   48 (413)
                      +..++||+|||||++|+++|++|+++| .+|+|+|+++..||...+
T Consensus         6 ~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            6 ELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             -CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence            345789999999999999999999998 799999999988877666

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.12  E-value=8.8e-10  Score=106.13  Aligned_cols=45  Identities=29%  Similarity=0.337  Sum_probs=40.2

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      ...+||+|||||++|+++|++|+++|++|+|+|+++..||+..+.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~   53 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTA   53 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeee
Confidence            456899999999999999999999999999999999988865443

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.12  E-value=3.2e-10  Score=109.93  Aligned_cols=44  Identities=41%  Similarity=0.495  Sum_probs=40.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCCCCCCCccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~~gg~~~s~   49 (413)
                      ..+||+|||||++|++||++|+++| ++|+|+|+++.+||+..+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~   51 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTV   51 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeee
Confidence            4689999999999999999999999 9999999999999887654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.12  E-value=7.7e-10  Score=105.82  Aligned_cols=58  Identities=12%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+++ .++++|.||+|+|.+.+
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~~~~v~~~~-~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAH--M--DGEFVLTTTH-GELRADKLLVATGRTPN  272 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEE--E--TTEEEEEETT-EEEEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEE--e--CCEEEEEECC-cEEEcCEEEECCCCCcC
Confidence            457788899999999999999999999987  6  4566677764 46999999999998764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.10  E-value=2.6e-10  Score=109.93  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|.+.+
T Consensus       222 d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          222 DADAALVLEESFAERGVRLFKNARAASVTR--T--GAGVLVTMTDGRTVEGSHALMTIGSVPN  280 (499)
T ss_dssp             SHHHHHHHHHHHHHTTCEEETTCCEEEEEE--C--SSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEE--e--CCEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            356778888999999999999999999987  6  3457787888888999999999998764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.09  E-value=3.3e-09  Score=94.86  Aligned_cols=39  Identities=41%  Similarity=0.424  Sum_probs=35.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg   44 (413)
                      ..+||+|||||++|+++|+.|+++  |++|+|+|+....++
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg  104 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG  104 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence            357999999999999999999998  999999999887753

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.09  E-value=1.3e-09  Score=101.59  Aligned_cols=69  Identities=19%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|.+.+ .++..+ ++.+
T Consensus       186 ~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~-g~~~  255 (384)
T 2v3a_A          186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKK--A--GEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA-GLAV  255 (384)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEECCHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHC-CCCC
Confidence            567888899999999999999999999987  6  4567888888888999999999998765 366555 5443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.09  E-value=1.1e-09  Score=104.90  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCc
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLE  224 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~  224 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++.+|.||+|+|...+ .++..+ |+.
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~-gl~  269 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEG--E--NGKVARVITDKRTLDADLVILAAGVSPNTQLARDA-GLE  269 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--S--SSBEEEEEESSCEEECSEEEECSCEEECCHHHHHH-TCC
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEc--c--CCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhC-Ccc
Confidence            357788888999999999999999999987  6  4556677778888999999999998754 455554 543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.08  E-value=5.9e-10  Score=100.58  Aligned_cols=59  Identities=17%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|++++++++|+.+..  +.. ++.+.+.+.+|+++++|+||+|+|.+.
T Consensus        56 ~~~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           56 QKLAGALKVHVDEYDVDVIDSQSASKLIP--AAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHHHTSCEEEECSCCEEEEEC--CSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHcCCeEEccCEEEEEEe--cccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            45667777778888999999999999976  421 246888888887799999999999854

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.08  E-value=8.2e-10  Score=99.80  Aligned_cols=38  Identities=29%  Similarity=0.352  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +..|||+|||||+||++||.+|+++|++|+|||+...+
T Consensus         4 e~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~g   41 (312)
T 4gcm_A            4 EIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPG   41 (312)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            34699999999999999999999999999999986543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.07  E-value=1.1e-09  Score=105.08  Aligned_cols=60  Identities=10%  Similarity=0.007  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC-cEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  ++++..+.|.+.+| +++.+|.||+|+|...+
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEK--NVETDKLKIHMNDSKSIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEE--CC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEE--cCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence            56777888888999999999999999987  52222477888888 67999999999997543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.06  E-value=4.5e-09  Score=100.22  Aligned_cols=58  Identities=14%  Similarity=0.083  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+ ++.+|.||+|+|...+
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALER--D--AQGTTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEE--E--TTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--e--CCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence            46677888889999999999999999987  5  345778888888 8999999999997653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.06  E-value=9.2e-10  Score=105.97  Aligned_cols=58  Identities=16%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~s  213 (413)
                      +..+.+.+.+.+++.|++++++++|.++..  +  ++.+.+...   +|  +++.+|.||+|+|...
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p  300 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVK--S--GDGAKVTFEPVKGGEATTLDAEVVLIATGRKP  300 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTSCCCEEEEESEEEECCCCEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEE--e--CCEEEEEEEecCCCceEEEEcCEEEEeeCCcc
Confidence            356778888889999999999999999987  6  344545443   24  4799999999999754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.05  E-value=3.3e-09  Score=101.68  Aligned_cols=58  Identities=19%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC--C-cEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN--G-EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~--g-~~i~ad~VV~A~G~~s  213 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+...+  | +++.+|.||+|+|...
T Consensus       220 ~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          220 DEQVAKEAQKILTKQGLKILLGARVTGTEV--K--NKQVTVKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEE--C--SSCEEEEEESSSEEEEEEESEEEECSCEEE
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEE--c--CCEEEEEEEeCCCcEEEECCEEEEeeCCcc
Confidence            356778888889999999999999999987  6  3445555443  3 5799999999999743

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.05  E-value=2.3e-09  Score=101.90  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  ++ ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVK--NT-DGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--eC-CcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            46778888889999999999999999987  52 2347788888888999999999997654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.05  E-value=8.4e-09  Score=96.66  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  ++ +....|.+.+|+++.+|.||+|+|...+ .+++.+ ++.+
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~  253 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAA--EG-DRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAA-GLPT  253 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEE--ET-TEEEEEEETTSCEEECSEEEECCCEEECCHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEe--cC-CcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhC-CCCC
Confidence            467888899999999999999999999987  52 2455688889988999999999998664 466655 5544

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.04  E-value=2.2e-09  Score=102.35  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.+|+++++|.||+|+|...+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~--~--~~~v~v~~~~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVP--E--AKGARVELEGGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEE--e--CCEEEEEECCCeEEEcCEEEECcCCCcC
Confidence            56778888888889999999999999987  6  4567777777888999999999998764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.03  E-value=1.3e-09  Score=98.87  Aligned_cols=56  Identities=9%  Similarity=0.062  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +..+...+.+.+++.|++++.++ |+++..  +  ++.+.+ +.++.++.+|+||+|+|...
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~--~--~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           61 GPLLMERMHEHATKFETEIIFDH-INKVDL--Q--NRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCC-EEEEEC--S--SSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEee-eeEEEe--c--CCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence            34566677777888899999886 888877  5  456666 55677799999999999754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.03  E-value=2e-09  Score=102.94  Aligned_cols=58  Identities=12%  Similarity=0.067  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHH-HHCCCEEEcCceEEEEEEecccCCCeEEEEcC--CC--cEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLA-IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~-~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+ ++.|++++++++|+++..  +  ++.+.+.+.  +|  +++++|.||+|+|...+
T Consensus       215 ~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~  277 (468)
T 2qae_A          215 EDVTNALVGALAKNEKMKFMTSTKVVGGTN--N--GDSVSLEVEGKNGKRETVTCEALLVSVGRRPF  277 (468)
T ss_dssp             HHHHHHHHHHHHHHTCCEEECSCEEEEEEE--C--SSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhhcCCcEEEeCCEEEEEEE--c--CCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence            56778888888 899999999999999987  6  334555543  56  57999999999998654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.03  E-value=1.2e-09  Score=99.75  Aligned_cols=56  Identities=23%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEE-EcCCCcEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTV-VTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v-~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ...+...+.+.+++.|+++++++ |.++..  .   +.+.| .+.+|+++++|+||+|+|...
T Consensus        70 ~~~~~~~l~~~~~~~~v~~~~~~-v~~i~~--~---~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           70 GPELMDEMREQALRFGADLRMED-VESVSL--H---GPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCC-EEEEEC--S---SSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEEee-EEEEEe--C---CcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence            34566777777888899999886 888865  3   44566 677787899999999999854

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.03  E-value=2.5e-10  Score=109.18  Aligned_cols=57  Identities=16%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCe--EEEEcCCCc----EEEcCEEEEcCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGG--VTVVTSNGE----KFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~--~~v~~~~g~----~i~ad~VV~A~G~  211 (413)
                      ..+...+...+++.+++++++++|+++..  +++ ++.  +.|.+.+|.    ++++|+||+|+|.
T Consensus       127 ~~~~~~l~~~~~~~~~~i~~~~~V~~i~~--~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          127 MEFNDYLRWVASHFQEQSRYGEEVLRIEP--MLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHHHHTTCTTTEEESEEEEEEEE--EEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEE--ecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            45666677777777899999999999987  521 233  467766664    7999999999997

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.02  E-value=9.3e-10  Score=105.64  Aligned_cols=40  Identities=35%  Similarity=0.601  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      |+.++||+|||||++|+++|+.|++.|++|+|||++...|
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~G   42 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG   42 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            3457999999999999999999999999999999976554

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.00  E-value=1.4e-09  Score=103.91  Aligned_cols=39  Identities=36%  Similarity=0.486  Sum_probs=35.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      .++||+|||||++|+++|..|+++|++|+|||+.+..||
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG   41 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGG   41 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            369999999999999999999999999999998776643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=99.00  E-value=1e-10  Score=108.94  Aligned_cols=51  Identities=10%  Similarity=-0.079  Sum_probs=41.6

Q ss_pred             eeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          149 VIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       149 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      .++...+.+.|.+.+.+.|++++++++|++++.  .   .          ++++|.||.|+|.+|.
T Consensus        94 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~---~----------~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           94 GVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L---P----------LADYDLVVLANGVNHK  144 (381)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C---C----------GGGCSEEEECCGGGGG
T ss_pred             eecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c---c----------cccCCEEEECCCCCch
Confidence            355678899999999999999999999987743  2   0          2579999999999885

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.00  E-value=1e-09  Score=105.35  Aligned_cols=39  Identities=31%  Similarity=0.402  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ..++||+|||||++|+++|+.|+++|++|+|||++...|
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~G   41 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLG   41 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcC
Confidence            346899999999999999999999999999999976554

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.99  E-value=1.4e-09  Score=104.57  Aligned_cols=59  Identities=19%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  ++ ++.+.|.+.+|+++.+|.||+|+|...+
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p~  289 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTK--NA-DGTRHVVFESGAEADYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cC-CCEEEEEECCCcEEEcCEEEEccCCCcC
Confidence            56778888999999999999999999987  52 2357788888878999999999998654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.97  E-value=3.1e-09  Score=102.86  Aligned_cols=60  Identities=13%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ...+...+.+.+.+.|++++.+++|+++..  +.. ++.+.|.+.+|+++++|+||+|+|.+.
T Consensus       266 ~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~--~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          266 GQKLAGALKAHVSDYDVDVIDSQSASKLVP--AATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHHHHHHHHTSCEEEECSCCEEEEEC--CSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEe--ccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            345667777888888999999999999975  421 246888888888899999999999854

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.97  E-value=7.2e-09  Score=99.98  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      ..+...+.+.+++.|+++++++.|.++..  .  ++.+.+.+.++.++.+|.|++|+|-..
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~--~--~~~~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTK--M--DDKILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEe--c--CCeEEEEEcCCCeEEEEEEEEcccccC
Confidence            56788889999999999999999999988  6  567888888888899999999999643

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.96  E-value=9e-09  Score=100.04  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~   40 (413)
                      ..||+||||||.||+++|.+|++. +.+|+|||++.
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999985 88999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.96  E-value=6.8e-09  Score=103.96  Aligned_cols=41  Identities=39%  Similarity=0.377  Sum_probs=36.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..++||+|||||++|+++|+.|+++|++|+|||++...||.
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~  429 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR  429 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCE
Confidence            34689999999999999999999999999999998876543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.96  E-value=6e-09  Score=99.94  Aligned_cols=59  Identities=15%  Similarity=-0.078  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC-------CcEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN-------GEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~-------g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.+.+.+++.|++++++++|+++..  .+++..+.+.+.+       |+++.+|.||+|+|...
T Consensus       228 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p  293 (478)
T 3dk9_A          228 SMISTNCTEELENAGVEVLKFSQVKEVKK--TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVP  293 (478)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEE--CSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--cCCCcEEEEEEccCCCCcccceEEEcCEEEEeecccc
Confidence            56778888889999999999999999987  5322135666554       25689999999999754

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.96  E-value=1.2e-08  Score=97.34  Aligned_cols=59  Identities=20%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-C--Cc--EEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-N--GE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~--g~--~i~ad~VV~A~G~~s~  214 (413)
                      ...+.+.+.+.+++.|++++++++|+++..  +  ++.+.+.+. +  |+  ++.+|.||+|+|...+
T Consensus       209 ~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          209 DPETAALLRRALEKEGIRVRTKTKAVGYEK--K--KDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEE--E--TTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             CHHHHHHHHHHHHhcCCEEEcCCEEEEEEE--e--CCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence            356778888889999999999999999987  6  345666654 5  65  7999999999997553

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.95  E-value=7.9e-09  Score=98.89  Aligned_cols=40  Identities=33%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      +.++||+|||||++|+++|..|+++|++|+|||+++..||
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG   43 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGG   43 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccc
Confidence            3568999999999999999999999999999999866644

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.95  E-value=6.8e-09  Score=100.85  Aligned_cols=37  Identities=32%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~   42 (413)
                      ..+|+||||+|.+|+++|++|++. |.+|+|||++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            569999999999999999999998 8999999998654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.94  E-value=7.9e-09  Score=98.98  Aligned_cols=60  Identities=20%  Similarity=0.155  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-----cCCCcEEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-----TSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-----~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +..+.+.+.+.+++.|++++++++|+++..  +++ ..+.+.     +.+++++++|.||+|+|...+
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATK--KSD-GKIDVSIEAASGGKAEVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEE--CTT-SCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEE--cCC-ceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence            456778888999999999999999999987  622 225555     356667999999999997654

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.93  E-value=1.4e-08  Score=98.31  Aligned_cols=36  Identities=31%  Similarity=0.551  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            346999999999999999999999999999999964

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.93  E-value=3.1e-09  Score=96.00  Aligned_cols=56  Identities=13%  Similarity=0.131  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEE--EEcCCCcEEEcCEEEEcCCCC
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVT--VVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~--v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      .+..+...+.+.+++.|++++++ +|.++ .  ++..+.+.  +.+.+  ++.+|+||+|+|..
T Consensus        60 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~--~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           60 DGISFMAPWSEQCMRFGLKHEMV-GVEQI-L--KNSDGSFTIKLEGGK--TELAKAVIVCTGSA  117 (315)
T ss_dssp             CHHHHHHHHHHHHTTTCCEEECC-CEEEE-E--ECTTSCEEEEETTSC--EEEEEEEEECCCEE
T ss_pred             CHHHHHHHHHHHHHHcCcEEEEE-EEEEE-e--cCCCCcEEEEEecCC--EEEeCEEEEeeCCC
Confidence            34567777888888889999987 89999 7  62115677  44444  69999999999973

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.93  E-value=2e-08  Score=96.91  Aligned_cols=46  Identities=35%  Similarity=0.437  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +...+||+|||||++|+++|+.|+++|++|+|+|+++..||...+.
T Consensus        30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~   75 (498)
T 2iid_A           30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY   75 (498)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEE
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeee
Confidence            3446899999999999999999999999999999999888765543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.92  E-value=5.1e-09  Score=100.68  Aligned_cols=59  Identities=14%  Similarity=0.091  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..+.+.+.+.+++.|++++++++|.++..  ++ ++.+.|.+.+|+++++|.||+|+|...+
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~-~~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSL--NT-DGSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cC-CceEEEEECCCcEEEcCEEEECCCCccc
Confidence            46778888889999999999999999987  52 2357788888888999999999997553

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.92  E-value=1.6e-08  Score=94.97  Aligned_cols=69  Identities=17%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|++++++++|.++..  +  +....|.+.+|+++.+|.||+|+|...+ .++..+ |+.+
T Consensus       184 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~-gl~~  253 (410)
T 3ef6_A          184 GRRIGAWLRGLLTELGVQVELGTGVVGFSG--E--GQLEQVMASDGRSFVADSALICVGAEPADQLARQA-GLAC  253 (410)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEC--S--SSCCEEEETTSCEEECSEEEECSCEEECCHHHHHT-TCCB
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEec--c--CcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhC-CCcc
Confidence            356778888889999999999999999977  5  3556788888988999999999998765 566655 6544

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.90  E-value=1.1e-08  Score=98.25  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +.++||+|||||++|+++|..|+++|++|+|||+.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~   38 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYV   38 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEec
Confidence            45799999999999999999999999999999984

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.90  E-value=8.2e-09  Score=98.84  Aligned_cols=44  Identities=41%  Similarity=0.471  Sum_probs=38.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~   49 (413)
                      ..+||+|||||++|+++|+.|+++|+ +|+|+|++...||+..+.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~   47 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT   47 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeec
Confidence            46899999999999999999999999 899999998888775553

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.89  E-value=1.6e-08  Score=97.24  Aligned_cols=56  Identities=9%  Similarity=0.040  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC--CC--cEEEcCEEEEcCCCCh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS--NG--EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~--~g--~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.+.+.+++. ++++++++|+++..  +  ++.+.+.+.  +|  +++.+|.||+|+|...
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~--~--~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p  274 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIE--K--EDAVEVIYFDKSGQKTTESFQYVLAATGRKA  274 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEE--C--SSSEEEEEECTTCCEEEEEESEEEECSCCEE
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEE--c--CCEEEEEEEeCCCceEEEECCEEEEeeCCcc
Confidence            56777888888877 99999999999987  6  344556543  66  5799999999999754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.89  E-value=1.2e-09  Score=105.01  Aligned_cols=67  Identities=13%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCccceeEEEEE
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLELPIQAVETT  233 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~~~~~~~g~  233 (413)
                      +.+++.|+++++++.|+++..  +  +....+.+.+|+++.+|.||+|+|.+.+ .+++.+ |..+.+.+ +|.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~--~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~-g~~~~~~~-~g~  332 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEG--N--EKVERVIDMNNHEYKVDALIFADGRRPDINPITQA-GGKLRFRR-GYY  332 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEEC--S--SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHT-TCCEEEET-TEE
T ss_pred             HHHHhCCcEEEeCCeeEEEec--C--CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhc-CCCccccC-Cce
Confidence            667778999999999999977  5  3455566778888999999999998765 477665 66544333 443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.88  E-value=1.4e-08  Score=96.99  Aligned_cols=33  Identities=39%  Similarity=0.531  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++||+|||||++|+++|..|+++|++|+|||++
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            589999999999999999999999999999997

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.88  E-value=1.5e-09  Score=96.47  Aligned_cols=41  Identities=32%  Similarity=0.393  Sum_probs=37.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      +||+|||||++|+++|+.|+++|++|+||||++.+||+..+
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~   43 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSS   43 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccc
Confidence            79999999999999999999999999999999888766544

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.87  E-value=1.3e-08  Score=100.10  Aligned_cols=64  Identities=14%  Similarity=0.110  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGL  223 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~  223 (413)
                      ..+.+.+.+.+++.|++++++++|.++..  +  ++  .|.+.+|+++.+|.||+|+|...+ .++..+ |+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~--~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~-g~  292 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEE--N--GA--VVRLKSGSVIQTDMLILAIGVQPESSLAKGA-GL  292 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEG--G--GT--EEEETTSCEEECSEEEECSCEEECCHHHHHT-TC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEec--C--CC--EEEECCCCEEEcCEEEEccCCCCChHHHHhc-Cc
Confidence            57788888999999999999999999977  5  23  355677888999999999998654 455544 44

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.87  E-value=1.4e-08  Score=96.74  Aligned_cols=33  Identities=39%  Similarity=0.469  Sum_probs=32.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++||+|||||++|+++|..|++.|++|+|||+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            589999999999999999999999999999997

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.87  E-value=2.4e-08  Score=96.20  Aligned_cols=59  Identities=12%  Similarity=0.080  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcE-EEcCEEEEcCCCChH
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEK-FWGKKCVVTAGAWVG  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~-i~ad~VV~A~G~~s~  214 (413)
                      ..+...+.+.+++.|++++++++|+++..  +++ +.+.+.+.+|++ +.+|.||+|+|...+
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~-~~~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKK--VSD-KNLSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE--SST-TCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEE--cCC-ceEEEEECCCcEEEECCEEEECCCCCcC
Confidence            56778888899999999999999999987  522 347778888887 999999999997654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.85  E-value=4.8e-08  Score=93.72  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +.++||+|||||++|+++|++|+++|++|+|||+.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            35799999999999999999999999999999964

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.82  E-value=8.4e-09  Score=99.16  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g---~~V~liE~~~~~   42 (413)
                      ++||+|||||++|+++|..|+++|   .+|+|||++...
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            489999999999999999999988   999999997643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.81  E-value=8e-08  Score=94.15  Aligned_cols=68  Identities=21%  Similarity=0.277  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-----------------CCCeEEEEcCCCcEEEcCEEEEcCCCChH-
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-----------------VKGGVTVVTSNGEKFWGKKCVVTAGAWVG-  214 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-----------------~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-  214 (413)
                      ..+...+.+.+++.|++++++++|.++..  +.                 .++.+.+.+.+|+++.+|.||+|+|...+ 
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSY--QVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEE--ECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEec--cccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence            56778888889999999999999999976  31                 13456677788888999999999998664 


Q ss_pred             HhhhhhcCC
Q 015088          215 KLVKRITGL  223 (413)
Q Consensus       215 ~l~~~~~g~  223 (413)
                      .++..+ |+
T Consensus       270 ~l~~~~-g~  277 (565)
T 3ntd_A          270 QLARDA-GL  277 (565)
T ss_dssp             HHHHHH-TC
T ss_pred             HHHHhC-Cc
Confidence            455544 44

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.81  E-value=1.2e-08  Score=94.81  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=33.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ++.+|+|||||++|+++|..|...+.+|+|||+++..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            5689999999999999999997778999999998654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.80  E-value=4.5e-09  Score=102.23  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~   41 (413)
                      ...||+||||||.||+++|.+|++.| .+|+|||++..
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            45799999999999999999999997 69999999865

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.80  E-value=1.6e-08  Score=96.19  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      ++||+|||||++|+++|+.|++.  |++|+|||+++..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999998  8899999998654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.80  E-value=3e-08  Score=93.11  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKR  219 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~  219 (413)
                      ..+.+.+.+.+++.|++++++++|++++.  +    .  +.+.+|+++++|.||+|+|...+.++..
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~--v~~~~g~~~~~D~vi~a~G~~~~~~l~~  276 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--H----E--IVDEKGNTIPADITILLPPYTGNPALKN  276 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--S----E--EEETTSCEEECSEEEEECCEECCHHHHT
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--C----e--EEECCCCEEeeeEEEECCCCCccHHHHh
Confidence            57788888999999999999999999865  4    2  5667888899999999999877666554

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.79  E-value=1.1e-08  Score=97.21  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      +||+|||||++|+++|++|+++  |++|+|||++...
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999998  8999999998765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.79  E-value=6e-08  Score=90.90  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      +..+.+.+.+.+++.|++++++++|+++..     +   .|.+.+|+++.+|.||+|+|...+ .++..+ ++.+
T Consensus       186 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-----~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-gl~~  251 (408)
T 2gqw_A          186 PATLADFVARYHAAQGVDLRFERSVTGSVD-----G---VVLLDDGTRIAADMVVVGIGVLANDALARAA-GLAC  251 (408)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESCCEEEEET-----T---EEEETTSCEEECSEEEECSCEEECCHHHHHH-TCCB
T ss_pred             CHHHHHHHHHHHHHcCcEEEeCCEEEEEEC-----C---EEEECCCCEEEcCEEEECcCCCccHHHHHhC-CCCC
Confidence            457788888999999999999999998843     2   566678888999999999998654 566665 5543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.76  E-value=1.7e-08  Score=95.64  Aligned_cols=34  Identities=32%  Similarity=0.594  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHH---cCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAK---RGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~---~g~~V~liE~~~   40 (413)
                      +.||+|||||++|+++|+.|++   .|++|+|||+++
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND   40 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC
Confidence            4689999999999999999999   899999999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.73  E-value=3.2e-08  Score=93.42  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~~   41 (413)
                      .+||+|||||++|+++|..|+++|+  +|+|||+...
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            5899999999999999999999998  7999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.72  E-value=3.4e-08  Score=93.84  Aligned_cols=35  Identities=29%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      +||+|||||++|+++|..|++.  |++|+|||++...
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            3899999999999999999998  9999999998654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.70  E-value=4.4e-08  Score=93.20  Aligned_cols=35  Identities=29%  Similarity=0.257  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      +||+|||||++|+++|..|+++  |++|+|||++...
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            4899999999999999999998  9999999998643

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.70  E-value=1.1e-08  Score=95.50  Aligned_cols=50  Identities=28%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCCCCCCcccC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~gg~~~s~~   50 (413)
                      |..|+.++||+|||||++|+++|++|+++ |++|+|+|+++..||...+..
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~   51 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEA   51 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEE
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeecc
Confidence            55555679999999999999999999999 999999999999988776654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.70  E-value=5.3e-08  Score=93.33  Aligned_cols=36  Identities=22%  Similarity=0.441  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      ++||+|||||++|+++|..|++.  |.+|+|||+....
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            36999999999999999999996  8999999997654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.69  E-value=4.6e-07  Score=85.45  Aligned_cols=62  Identities=15%  Similarity=0.061  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC--cEEEcCEEEEcCCCChHHhhhhh
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG--EKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g--~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      ....+.+.+.++++|+++++++.|++++.      +.+.+...+|  +++.+|.+|+|+|...+.++...
T Consensus       200 ~~~~~~l~~~l~~~GV~~~~~~~v~~v~~------~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~  263 (430)
T 3hyw_A          200 GASKRLVEDLFAERNIDWIANVAVKAIEP------DKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASA  263 (430)
T ss_dssp             TTHHHHHHHHHHHTTCEEECSCEEEEECS------SEEEEECTTSCEEEEECSEEEEECEEECCHHHHTT
T ss_pred             HHHHHHHHHHHHhCCeEEEeCceEEEEeC------CceEEEeeCCCceEeecceEEEeccCCCchHHHhc
Confidence            34566778888899999999999999855      3455665554  47999999999998766666554

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.68  E-value=3.4e-08  Score=95.86  Aligned_cols=36  Identities=36%  Similarity=0.402  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~~~   42 (413)
                      .||+||||||.+|+.+|.+|++ .+.+|+|||++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999999 69999999998644

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.67  E-value=1.8e-07  Score=89.11  Aligned_cols=35  Identities=26%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .++||+|||||++|+++|.+|++.|++|+|||+..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccCC
Confidence            46899999999999999999999999999999943

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.67  E-value=2.6e-07  Score=90.00  Aligned_cols=37  Identities=43%  Similarity=0.543  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +..+|+||||+|++|+++|++|++.|++|+|||++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3569999999999999999999999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.67  E-value=9.6e-08  Score=92.74  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~~   41 (413)
                      .+||+||||||.+|+.+|.+|++ .|++|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            46999999999999999999998 6789999999854

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.65  E-value=1e-07  Score=92.40  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=32.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..||+||||||.+|+.+|.+|++ |.+|+|||++..
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            46899999999999999999999 999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.65  E-value=1.1e-08  Score=94.50  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      -.||+|||||++|+++|..|+++| +|+|||++...
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            369999999999999999999999 99999997653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.58  E-value=2.3e-06  Score=85.33  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=36.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..+||+|||||++|+++|..|+++|++|+|||+++..|+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~  411 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ  411 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCe
Confidence            4589999999999999999999999999999998776543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.56  E-value=4.9e-07  Score=89.11  Aligned_cols=34  Identities=38%  Similarity=0.558  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .++||+|||||++|+++|.+|+++|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999984

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.56  E-value=4e-07  Score=87.63  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .++|++|||+|++|+++|++|++.|++|+|||++..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            469999999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.53  E-value=2.7e-06  Score=85.54  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.+..||.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~  427 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGH  427 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCe
Confidence            4579999999999999999999999999999998877554

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.52  E-value=8.4e-08  Score=88.68  Aligned_cols=45  Identities=31%  Similarity=0.514  Sum_probs=40.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      ...+||+|||||++|+++|++|+++|++|+|+|+++..||...+.
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~   71 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDC   71 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCE
T ss_pred             CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCcccee
Confidence            346899999999999999999999999999999998887766544

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.51  E-value=3.7e-07  Score=85.34  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .+.+.+++.|+++++++++..++.  +  .....+.+.+|+++++|.||+|+|...+.++...
T Consensus       207 ~~~~~l~~~gi~v~~~~~v~~v~~--~--~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~  265 (401)
T 3vrd_B          207 LYGFGTENALIEWHPGPDAAVVKT--D--TEAMTVETSFGETFKAAVINLIPPQRAGKIAQSA  265 (401)
T ss_dssp             HSCTTSTTCSEEEECTTTTCEEEE--E--TTTTEEEETTSCEEECSEEEECCCEEECHHHHHT
T ss_pred             HHHHHHHhcCcEEEeCceEEEEEe--c--ccceEEEcCCCcEEEeeEEEEecCcCCchhHhhc
Confidence            333344667999999999999887  5  4556788889999999999999997666666654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.51  E-value=1.6e-06  Score=81.76  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecc-cCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCcc
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKD-AVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLEL  225 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~~  225 (413)
                      +.+.+.+.+++.|++++++++|+++..  + +++....|.+.+|+++.+|.||+|+|...+ .++..+ ++.+
T Consensus       193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~-gl~~  262 (431)
T 1q1r_A          193 VSAFYEHLHREAGVDIRTGTQVCGFEM--STDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAA-GLQV  262 (431)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEE--CTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHT-TCCB
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEe--ccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhcc-CCCC
Confidence            344456667778999999999999865  3 223444778888888999999999997654 566655 5543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.51  E-value=1e-07  Score=87.32  Aligned_cols=46  Identities=28%  Similarity=0.395  Sum_probs=40.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc-CCCCCCCcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF-DFLHHRGSSHG   50 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~-~~~gg~~~s~~   50 (413)
                      ...+||+|||||++|+++|++|+++|++|+|+|++ +..||+..+..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~   88 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFH   88 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEEC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeec
Confidence            45689999999999999999999999999999999 88887765543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.1e-07  Score=86.38  Aligned_cols=41  Identities=39%  Similarity=0.389  Sum_probs=35.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH--cCCcEEEEcccCCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAK--RGQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~--~g~~V~liE~~~~~gg~~   46 (413)
                      ..+||+|||||++|++||++|++  .|++|+|||++..+||..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            35899999999999999999986  499999999998776543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.50  E-value=1.3e-06  Score=85.41  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~~~   42 (413)
                      ..+|+||||+|.+|+++|.+|++ .|.+|+|||++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            46999999999999999999999 79999999998644

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.46  E-value=6.1e-07  Score=92.91  Aligned_cols=37  Identities=35%  Similarity=0.500  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ++||+|||||++|+++|..|+++|++|+|||++...|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            5899999999999999999999999999999987664

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.44  E-value=1.5e-06  Score=83.29  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-----CCcEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-----NGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-----~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|+++..  .++++.+.+.+.     +++++.+|.||+|+|...+
T Consensus       227 ~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          227 AKATQKFLKKQGLDFKLSTKVISAKR--NDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEEE--ETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEE--ecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence            44456667788999999999999975  312345555543     3457999999999997653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.41  E-value=2e-06  Score=81.72  Aligned_cols=55  Identities=20%  Similarity=0.197  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CCcEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|+++..  +  ++.+.+.+.   +++++++|.||+|+|...+
T Consensus       214 ~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          214 AAIIKKRLKKKGVEVVTNALAKGAEE--R--EDGVTVTYEANGETKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHHHHHHTTCEEEESEEEEEEEE--E--TTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEE--e--CCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence            34455667788999999999999987  5  344555543   4457999999999997553

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.40  E-value=1.8e-06  Score=81.81  Aligned_cols=55  Identities=16%  Similarity=0.107  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.+.+.+.+++.|++++++++|+++..  +  +..+.+.+ +++++++|.||+|+|...+
T Consensus       193 ~~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~v~~v~~-~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          193 FTDVLTEEMEANNITIATGETVERYEG--D--GRVQKVVT-DKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEEC--S--SBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEc--c--CcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence            344556677788999999999999977  5  33334555 4456999999999997654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.39  E-value=2.3e-07  Score=89.61  Aligned_cols=45  Identities=29%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      ..+||+|||||++|+++|++|+++|++|+|+|+++..||...+..
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~   56 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS   56 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec
Confidence            358999999999999999999999999999999999988766543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.39  E-value=1.9e-07  Score=86.14  Aligned_cols=43  Identities=28%  Similarity=0.551  Sum_probs=38.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+++..||...+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~   44 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED   44 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec
Confidence            6999999999999999999999999999999988887765543

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.38  E-value=4.5e-07  Score=87.17  Aligned_cols=57  Identities=19%  Similarity=0.103  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCC------CeEEEEcCCC-----cEEEcCEEEEcCCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK------GGVTVVTSNG-----EKFWGKKCVVTAGA  211 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~------~~~~v~~~~g-----~~i~ad~VV~A~G~  211 (413)
                      ..+...|...+++.+..++++++|+++..  .+.+      +.|.|++.++     +++.|++||+|+|.
T Consensus       145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~--~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIP--GKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHHHTTGGGEEESEEEEEEEE--ECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCceEcceEEEeecc--ccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            45666666666667778999999999987  4321      3588876543     26889999999995

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.36  E-value=1.9e-06  Score=82.50  Aligned_cols=55  Identities=20%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCC----CcEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN----GEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~----g~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|.++..  +  ++.+.+.+.+    |+++.+|.||+|+|...+
T Consensus       229 ~~~l~~~l~~~gV~i~~~~~v~~i~~--~--~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~  287 (482)
T 1ojt_A          229 VKVWQKQNEYRFDNIMVNTKTVAVEP--K--EDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN  287 (482)
T ss_dssp             HHHHHHHHGGGEEEEECSCEEEEEEE--E--TTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred             HHHHHHHHHhcCCEEEECCEEEEEEE--c--CCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence            34455666778999999999999987  6  3455666555    667899999999997653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.36  E-value=2.7e-06  Score=81.42  Aligned_cols=60  Identities=17%  Similarity=0.146  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      .+.+.+.+++.|++++++++|+++..  +  +....+.+.++ ++++|.||+|+|...+ .++..+
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~v~~v~~~~~-~i~~D~vi~a~G~~p~~~~l~~~  290 (480)
T 3cgb_A          230 AEYIYKEADKHHIEILTNENVKAFKG--N--ERVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGT  290 (480)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEE--S--SBEEEEEETTE-EEECSEEEECSCEEESCGGGTTS
T ss_pred             HHHHHHHHHHcCcEEEcCCEEEEEEc--C--CcEEEEEECCC-EEEcCEEEECcCCCcChHHHHhC
Confidence            34456667788999999999999987  5  34445666544 6999999999998654 354443

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.33  E-value=5e-06  Score=79.77  Aligned_cols=61  Identities=18%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      .+.+.+.+++.|++++++++|+++..  +  ++.+.|.+.+|+++.+|.||+|+|...+ .++..+
T Consensus       229 ~~~~~~~l~~~GV~v~~~~~V~~i~~--~--~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~  290 (493)
T 1m6i_A          229 SNWTMEKVRREGVKVMPNAIVQSVGV--S--SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTG  290 (493)
T ss_dssp             HHHHHHHHHTTTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCCEEECCTTHHHH
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEe--c--CCeEEEEECCCCEEECCEEEECCCCCccHHHHHHc
Confidence            34455667778999999999999987  5  3556788888988999999999998654 455554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.33  E-value=5.2e-06  Score=79.08  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=40.6

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC-CC--cEEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g--~~i~ad~VV~A~G~~s~  214 (413)
                      +.+.+.+++.|++++++++|+++..  +  ++.+.+.+. +|  +++.+|.||+|+|...+
T Consensus       216 ~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          216 KEIEKQFKKLGVTILTATKVESIAD--G--GSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHHTCEEECSCEEEEEEE--C--SSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHcCCEEEeCcEEEEEEE--c--CCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence            3455566778999999999999987  6  334555543 55  57999999999997543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.30  E-value=7e-06  Score=77.93  Aligned_cols=54  Identities=13%  Similarity=0.088  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +.+.+.+.+++.|++++++++|+++..  .  ++.+.|.++++ ++++|.||+|+|...
T Consensus       191 ~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~~v~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          191 MVAEVQKSLEKQAVIFHFEETVLGIEE--T--ANGIVLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHHTTTEEEEETCCEEEEEE--C--SSCEEEEESSC-EEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEc--c--CCeEEEEECCC-EEEeCEEEECcCCCC
Confidence            445566677788999999999999986  5  34557777777 699999999999754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.28  E-value=9.1e-06  Score=77.13  Aligned_cols=55  Identities=11%  Similarity=0.073  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeE-EEEcCCCcEEEcCEEEEcCCCChH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGV-TVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~-~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.+.+.+.+++.|++++++++|+++..  +  ++.+ .+.+ +|+++++|.||+|+|...+
T Consensus       193 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~--~~~v~~v~~-~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          193 FTDILAKDYEAHGVNLVLGSKVAAFEE--V--DDEIITKTL-DGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHHTTCEEEESSCEEEEEE--E--TTEEEEEET-TSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHCCCEEEcCCeeEEEEc--C--CCeEEEEEe-CCCEEECCEEEECcCCCCC
Confidence            344556677888999999999999987  5  3344 3555 6777999999999997543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.28  E-value=4.1e-07  Score=87.30  Aligned_cols=35  Identities=14%  Similarity=0.240  Sum_probs=32.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+.+|||||||.+|+++|..|.+.+++|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCC
Confidence            35689999999999999999999999999999864

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=3.5e-06  Score=77.62  Aligned_cols=58  Identities=22%  Similarity=0.303  Sum_probs=42.9

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-HhhhhhcCCc
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRITGLE  224 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~~g~~  224 (413)
                      +.+.+.+++.|++++++++|+++..  +      .+.+.+|+ +++|.||+|+|...+ .++..+ ++.
T Consensus       187 ~~l~~~l~~~gV~i~~~~~v~~i~~--~------~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~-gl~  245 (367)
T 1xhc_A          187 NMIKDMLEETGVKFFLNSELLEANE--E------GVLTNSGF-IEGKVKICAIGIVPNVDLARRS-GIH  245 (367)
T ss_dssp             HHHHHHHHHTTEEEECSCCEEEECS--S------EEEETTEE-EECSCEEEECCEEECCHHHHHT-TCC
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEe--e------EEEECCCE-EEcCEEEECcCCCcCHHHHHhC-CCC
Confidence            3455667778999999999998854  2      25567787 999999999997654 466554 543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.28  E-value=5.4e-07  Score=83.55  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=38.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      ++||+|||||++|+++|++|+++|++|+|+|+++..||...+.
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~   45 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA   45 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccc
Confidence            3799999999999999999999999999999999888766553

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.27  E-value=5.2e-06  Score=78.90  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            357999999999999999999999999999987543

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.27  E-value=7.3e-06  Score=78.60  Aligned_cols=55  Identities=13%  Similarity=0.112  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          155 AVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       155 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      +.+.+.+.+++.|++++++++|+++..  +  +....+.+ +|+++++|.||+|+|...+
T Consensus       238 ~~~~l~~~l~~~GV~i~~~~~v~~i~~--~--~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          238 LTDLMAKNMEEHGIQLAFGETVKEVAG--N--GKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHHHTTTCEEEETCCEEEEEC--S--SSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEc--C--CcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence            344456667788999999999999976  5  33333445 5667999999999997543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.25  E-value=1.4e-06  Score=82.20  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFL   42 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~   42 (413)
                      +|+|||||++|+++|..|++.|  .+|+|||++...
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            6999999999999999999988  479999997543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.24  E-value=5.2e-06  Score=79.24  Aligned_cols=55  Identities=22%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcC---CC--cEEEcCEEEEcCCCChH
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTS---NG--EKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~---~g--~~i~ad~VV~A~G~~s~  214 (413)
                      .+.+.+.+++.|++++++++|.++..  +  ++.+.+.+.   +|  +++.+|.||+|+|...+
T Consensus       221 ~~~l~~~l~~~gv~i~~~~~v~~i~~--~--~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          221 RKQFQRSLEKQGMKFKLKTKVVGVDT--S--GDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHHHHSSCCEECSEEEEEEEC--S--SSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEE--c--CCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence            34456667788999999999999987  5  333555432   44  57999999999997653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.22  E-value=6.5e-07  Score=84.42  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .++||+|||||++|+++|+.|+++|++|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            34799999999999999999999999999999976

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.17  E-value=1.1e-05  Score=77.28  Aligned_cols=63  Identities=11%  Similarity=0.018  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc----EEEcCEEEEcCCCChHHhhhhh
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE----KFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~----~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      .+.+.+.+.+++.|++++++++|++++.  +  +....+.+.+|+    ++.+|.||+|+|...+++...+
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~--~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l  339 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVEE--K--QLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDL  339 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEECS--S--EEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHH
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEeC--C--ceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhH
Confidence            4556677788899999999999999866  4  234445556664    6999999999997655544433

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.16  E-value=1.4e-06  Score=85.78  Aligned_cols=39  Identities=28%  Similarity=0.459  Sum_probs=35.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|||+....++
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg   83 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSG   83 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCC
Confidence            468999999999999999999999999999999887754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.14  E-value=1.1e-05  Score=76.21  Aligned_cols=48  Identities=13%  Similarity=0.024  Sum_probs=38.4

Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      .+.+.+++.|++++++++|++++.  .      .+.+++|+++++|.||+|+|...
T Consensus       193 ~~~~~l~~~gV~i~~~~~v~~~~~--~------~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          193 PILDELDKREIPYRLNEEINAING--N------EITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             HHHHHHHHTTCCEEESCCEEEEET--T------EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHHhhccceEEEeccEEEEecC--C------eeeecCCeEEeeeeEEEEeceec
Confidence            345667788999999999988754  3      35667888899999999999654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.09  E-value=4.6e-05  Score=72.48  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      ..+|+|||+|.+|+-+|..|++.  +.+|+++++....
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            46899999999999999999998  8999999997643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.09  E-value=4.8e-06  Score=75.43  Aligned_cols=36  Identities=39%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      +||+|||||.+|+.+|+.|+++|++|+|+|++....
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~   37 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRM   37 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSC
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcC
Confidence            589999999999999999999999999999987543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.07  E-value=3.2e-06  Score=80.06  Aligned_cols=39  Identities=28%  Similarity=0.413  Sum_probs=35.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..||
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG  159 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG  159 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            457999999999999999999999999999999877654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.04  E-value=4.7e-05  Score=68.45  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            479999999999999999999999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.03  E-value=4.2e-05  Score=73.17  Aligned_cols=55  Identities=15%  Similarity=-0.001  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-----EEEcCEEEEcCCCCh
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-----KFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-----~i~ad~VV~A~G~~s  213 (413)
                      .+.+.+.+++.|++++++++|.++..  .++ +.+.|.+.++.     ++.+|.||+|+|...
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~-~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEK--QDD-GKLLVKYKNVETGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEE--CTT-SCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEE--cCC-CcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence            34456667788999999999999987  532 33555544332     689999999999744

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.01  E-value=5.2e-05  Score=68.69  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            4799999999999999999999999999998643

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.00  E-value=5.7e-06  Score=83.84  Aligned_cols=43  Identities=35%  Similarity=0.433  Sum_probs=38.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      ..++|+|||||++|+++|++|+++|++|+|+|+....||...+
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~  319 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  319 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceee
Confidence            3579999999999999999999999999999999988876444

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.00  E-value=4.8e-05  Score=69.93  Aligned_cols=57  Identities=11%  Similarity=0.127  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCC-CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEE-cCEEEEcCCCChHH
Q 015088          155 AVSMFQTLAIKNG-AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFW-GKKCVVTAGAWVGK  215 (413)
Q Consensus       155 ~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~-ad~VV~A~G~~s~~  215 (413)
                      +.+.+.+.+++.| ++++++++|.++..  +  ++.+.+.+.+|+++. +|.||+|+|...+.
T Consensus       216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~--~--~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          216 TRQRLGNVIKQGARIEMNVHYTVKDIDF--N--NGQYHISFDSGQSVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHHHHHHHHHTTCCEEEECSCCEEEEEE--E--TTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred             HHHHHHHHHhhCCcEEEecCcEEEEEEe--c--CCceEEEecCCeEeccCCceEEeeccCCcc
Confidence            3445566667776 99999999999976  5  356677778887665 59999999986543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.99  E-value=5.5e-06  Score=82.39  Aligned_cols=43  Identities=35%  Similarity=0.433  Sum_probs=38.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+.+..||...+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~  148 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVAT  148 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            4589999999999999999999999999999999888776444

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.99  E-value=3.8e-05  Score=72.79  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||+|..|+.+|..|++.|.+|+|+++.+.
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            4899999999999999999999999999998754

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.97  E-value=7.7e-05  Score=71.46  Aligned_cols=33  Identities=24%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC
Confidence            347999999999999999999999999999975

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.94  E-value=5.1e-05  Score=69.56  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  197 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE  197 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC
Confidence            4799999999999999999999999999998643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.84  E-value=0.00019  Score=69.27  Aligned_cols=32  Identities=25%  Similarity=0.196  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            46999999999999999999999999999974

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.83  E-value=7e-05  Score=67.30  Aligned_cols=34  Identities=26%  Similarity=0.231  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            5799999999999999999999999999998654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.79  E-value=8.2e-05  Score=66.91  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            479999999999999999999999999999854

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.79  E-value=0.00012  Score=66.16  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            5799999999999999999999999999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.76  E-value=0.00018  Score=68.42  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR  206 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            35799999999999999999999999999998654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.76  E-value=0.00036  Score=68.58  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|+|||||.+|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999985

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.75  E-value=0.00019  Score=69.58  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            35799999999999999999999999999999764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.75  E-value=3.1e-05  Score=75.45  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEcCceEEEEEEecccC-CCeEEEEcCCCcEEEcCEEEEcCC
Q 015088          153 TKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV-KGGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       153 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      ..+.++|.+.++..|++++++++|.+|..  +++ +....|.+.+|++++||+||....
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~v~gV~~~~Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVV--DKESRKCKAVIDQFGQRIISKHFIIEDS  434 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEE--ETTTCCEEEEEETTSCEEECSEEEEEGG
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEE--eCCCCeEEEEEeCCCCEEEcCEEEEChh
Confidence            78899999999999999999999999988  632 345566677898999999988544

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.72  E-value=1.3e-05  Score=79.08  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC--------CcEEEEcccC-CC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG--------QKTLLLEQFD-FL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g--------~~V~liE~~~-~~   42 (413)
                      ..+|+|||||++|+++|++|+++|        ++|+|+|+++ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            578999999999999999999998        9999999998 77

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.69  E-value=2.6e-05  Score=73.86  Aligned_cols=38  Identities=24%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-c------CCcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAK-R------GQKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~-~------g~~V~liE~~~~~gg   44 (413)
                      .+||+|||||++|+++|..|++ +      |++|+|||+.+..++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg   47 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   47 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCC
Confidence            5799999999999999999999 7      999999999876654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.68  E-value=0.0004  Score=62.03  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            5799999999999999999999999999998643

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.68  E-value=0.00016  Score=65.19  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDT  186 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCc
Confidence            4799999999999999999999999999998643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.68  E-value=0.00017  Score=64.60  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++...
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            5799999999999999999999999999998643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.65  E-value=3.9e-05  Score=80.05  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~   45 (413)
                      .+||+|||||++|+++|++|+++|+ +|+|+|+.+..||.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~  226 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGL  226 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcc
Confidence            5799999999999999999999999 79999998776543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.64  E-value=0.00056  Score=66.15  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999999764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.64  E-value=4e-05  Score=73.44  Aligned_cols=38  Identities=21%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~   42 (413)
                      ..++||+|||||++|+++|..|.++  |.+|+|||++...
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4568999999999999999999887  8899999998654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.62  E-value=4.4e-05  Score=72.39  Aligned_cols=39  Identities=23%  Similarity=0.192  Sum_probs=34.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDFLHH   44 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~~gg   44 (413)
                      ..+||+|||||++|+.+|..|+++|  ++|+|||+.+..++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg   45 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   45 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCc
Confidence            4579999999999999999999998  99999999877653

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.60  E-value=5.1e-05  Score=72.94  Aligned_cols=37  Identities=30%  Similarity=0.481  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..++|++|||+|.+|+.+|++|++.|.+|+|||++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4579999999999999999999999999999999853

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.58  E-value=0.00019  Score=69.60  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||+|.+|+-+|..|++.+.+|+|+++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999999764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.58  E-value=0.00026  Score=63.22  Aligned_cols=34  Identities=35%  Similarity=0.281  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  178 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcc
Confidence            4799999999999999999999999999998643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.54  E-value=0.00032  Score=63.35  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++...
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~  193 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA  193 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCc
Confidence            5799999999999999999999999999998653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.48  E-value=0.00029  Score=63.51  Aligned_cols=34  Identities=18%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++...
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            5799999999999999999999999999998643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.47  E-value=0.00027  Score=62.56  Aligned_cols=52  Identities=10%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh-HHhhhhh
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV-GKLVKRI  220 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s-~~l~~~~  220 (413)
                      +.+++.|++++. ++|.++..  +   +  .+.+.+|+++.+|.||+|+|... ..++..+
T Consensus       182 ~~l~~~gv~i~~-~~v~~i~~--~---~--~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~  234 (297)
T 3fbs_A          182 ALLAARGVRVET-TRIREIAG--H---A--DVVLADGRSIALAGLFTQPKLRITVDWIEKL  234 (297)
T ss_dssp             HHHHHTTCEEEC-SCEEEEET--T---E--EEEETTSCEEEESEEEECCEEECCCSCHHHH
T ss_pred             HHHHHCCcEEEc-ceeeeeec--C---C--eEEeCCCCEEEEEEEEEccCcccCchhHHhc
Confidence            345567999995 88988866  4   2  67777888899999999999753 2555554

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.45  E-value=0.00031  Score=63.60  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~  188 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD  188 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC
Confidence            579999999999999999999999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.37  E-value=0.0014  Score=61.94  Aligned_cols=35  Identities=11%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLA--------------------KRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~--------------------~~g~-~V~liE~~~~   41 (413)
                      ..+|+|||+|..|+-+|..|+                    +.|. +|+|++++..
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            357999999999999999999                    5676 6999998654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.13  E-value=0.0013  Score=62.08  Aligned_cols=58  Identities=12%  Similarity=0.055  Sum_probs=38.5

Q ss_pred             HHHHHHHHHH------CCCEEEcCceEEEEEEecccCCCeEEEEc--------------CCC--cEEEcCEEEEcCCCCh
Q 015088          156 VSMFQTLAIK------NGAVLRDNMEVKTVLKVKDAVKGGVTVVT--------------SNG--EKFWGKKCVVTAGAWV  213 (413)
Q Consensus       156 ~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~--------------~~g--~~i~ad~VV~A~G~~s  213 (413)
                      .+.|.+.+.+      .|+++++++.+.+|..  ++.-..+.+..              .+|  +++.+|.||+|+|...
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p  326 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG  326 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEEC
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEcccccc
Confidence            4455555555      7899999999999976  51112243331              134  3689999999999765


Q ss_pred             HH
Q 015088          214 GK  215 (413)
Q Consensus       214 ~~  215 (413)
                      +.
T Consensus       327 ~~  328 (456)
T 1lqt_A          327 VP  328 (456)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.11  E-value=0.0015  Score=63.00  Aligned_cols=34  Identities=35%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            4799999999999999999999999999998643

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.95  E-value=0.0023  Score=66.38  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|||+|..|+-+|..|++.|.+|+|+|+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~  317 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARS  317 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            479999999999999999999999999999864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.90  E-value=0.017  Score=55.83  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|||+|.+|+-+|..|++.+.+|+++++.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~  219 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP  219 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCC
Confidence            579999999999999999999999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.74  E-value=0.0016  Score=51.50  Aligned_cols=35  Identities=17%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ....|+|||+|..|..+|..|.+.|++|+++|++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            34679999999999999999999999999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.67  E-value=0.0021  Score=49.86  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|+|..|..+|..|.++|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.57  E-value=0.012  Score=61.53  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -+|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            389999999999999999999996 899999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.49  E-value=0.0043  Score=56.25  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.| +|+++.+..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            57999999999999999999998 699999863

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.46  E-value=0.0044  Score=47.98  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+-+|+|||.|..|..+|..|.+.|++|+++|++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            34579999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.42  E-value=0.0032  Score=48.54  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999853

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.39  E-value=0.014  Score=54.72  Aligned_cols=51  Identities=12%  Similarity=-0.025  Sum_probs=36.8

Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE--cCC-----CcEEEcCEEEEcCCCCh
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSN-----GEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~-----g~~i~ad~VV~A~G~~s  213 (413)
                      ..+.+.+++.|++++++++|++++.  +    .+.+.  ..+     ++++.+|.+|+|+|...
T Consensus       212 ~~~~~~l~~~gI~~~~~~~v~~v~~--~----~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~  269 (437)
T 3sx6_A          212 GILTKGLKEEGIEAYTNCKVTKVED--N----KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG  269 (437)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEET--T----EEEEEEECTTSCEEEEEEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEC--C----eEEEEecccCCccccceEEEEeEEEEcCCCcC
Confidence            3455667788999999999999865  3    33333  233     45789999999998543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.25  E-value=0.0046  Score=46.02  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~   40 (413)
                      ...|+|+|+|..|..++..|.+.| ++|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            357999999999999999999999 8999999853

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.18  E-value=0.0068  Score=47.70  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +..|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            357999999999999999999999999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.14  E-value=0.005  Score=56.76  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            47999999999999999999999999999997654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.10  E-value=0.0042  Score=55.36  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            47999999999999999999999999999987654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=96.04  E-value=0.025  Score=50.12  Aligned_cols=53  Identities=6%  Similarity=0.056  Sum_probs=35.0

Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH-Hhhhhh
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG-KLVKRI  220 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~-~l~~~~  220 (413)
                      ++.|++++.+ .+..+..  ++ +....+++.+|+++.+|.+|+++|...+ .++..+
T Consensus       191 ~~~g~~~~~~-~v~~~~~--~~-~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~  244 (304)
T 4fk1_A          191 SNKNIPVITE-SIRTLQG--EG-GYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQL  244 (304)
T ss_dssp             HTTTCCEECS-CEEEEES--GG-GCCCEEEETTSCEECCCEEEECCEEECSSCHHHHT
T ss_pred             hccceeEeee-eEEEeec--CC-CeeeeeeccccceeeecceeeeeccccCChhhhhc
Confidence            4457777755 4666655  42 2445678889988999999998886443 444444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.01  E-value=0.0064  Score=54.00  Aligned_cols=33  Identities=33%  Similarity=0.457  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|.|||+|..|...|..++.+|++|+|+|..
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999999999999999999999999999975

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.93  E-value=0.039  Score=52.74  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~   40 (413)
                      .+|+|||+|-+|+-++..|++.  +.+|+++=++.
T Consensus       247 KrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~  281 (501)
T 4b63_A          247 YNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDS  281 (501)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSS
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4699999999999999999975  67999998864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.83  E-value=0.01  Score=53.33  Aligned_cols=36  Identities=22%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      +....|+|||+|..|..+|..|++.|+ +|+|+|.+.
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            334689999999999999999999998 999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.80  E-value=0.0083  Score=56.82  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            57999999999999999999999999999997654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.76  E-value=0.0097  Score=45.98  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|+|..|..+|..|.+.|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999853

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.76  E-value=0.0097  Score=53.13  Aligned_cols=40  Identities=35%  Similarity=0.650  Sum_probs=30.9

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      |.|+++..+|+|||+|..|.++|+.|+..|.  +|+|+|...
T Consensus         1 ~~m~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            1 MEMVKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             ------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5544445789999999999999999999987  899999764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.68  E-value=0.01  Score=56.12  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            57999999999999999999999999999997654

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.59  E-value=0.009  Score=53.13  Aligned_cols=34  Identities=32%  Similarity=0.429  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+++...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            5799999999999999999999999999997643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.53  E-value=0.012  Score=54.05  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            357999999999999999999999999999997654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.51  E-value=0.011  Score=49.51  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|+|+|..|...|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            49999999999999999999999999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.51  E-value=0.013  Score=52.08  Aligned_cols=40  Identities=33%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |.+.....+|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 M~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            1 MSLTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4433345689999999999999999999999999999863

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.50  E-value=0.013  Score=47.52  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~   40 (413)
                      ..|+|||+|..|..+|..|.+. |++|+++|++.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            4799999999999999999999 99999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.50  E-value=0.015  Score=51.59  Aligned_cols=32  Identities=34%  Similarity=0.553  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            46999999999999999999999999999985

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.45  E-value=0.016  Score=50.78  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            479999999999999999999999999999853

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.43  E-value=0.014  Score=55.01  Aligned_cols=36  Identities=39%  Similarity=0.433  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            357999999999999999999999999999997653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.37  E-value=0.015  Score=54.01  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||+|..|+-+|..|++.|.+|+|+|+.+..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL  180 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            357999999999999999999999999999997654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.32  E-value=0.024  Score=50.29  Aligned_cols=35  Identities=34%  Similarity=0.529  Sum_probs=31.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...+|.|||.|..|...|..|++.|++|++++++.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45689999999999999999999999999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.31  E-value=0.017  Score=51.52  Aligned_cols=34  Identities=24%  Similarity=0.516  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...|.|||+|..|...|..|++.|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            4579999999999999999999998 999999864

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.30  E-value=0.016  Score=51.77  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            479999999999999999999999999999853

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.20  E-value=0.023  Score=54.68  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=32.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...+++|||||+.|+-.|..+++.|.+|+|+++...
T Consensus       222 lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            346899999999999999999999999999987543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.20  E-value=0.018  Score=54.44  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||.+|+.+|..|++.|.+|+|+|+.+..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            47999999999999999999999999999997654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.15  E-value=0.017  Score=51.49  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            469999999999999999999999999999853

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=0.043  Score=52.11  Aligned_cols=35  Identities=31%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  220 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETV  220 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcc
Confidence            57999999999999999999999999999997654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.10  E-value=0.068  Score=49.58  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDEL  178 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            357999999999999999999999999999997654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.09  E-value=0.023  Score=51.21  Aligned_cols=32  Identities=28%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|.|||+|..|...|..|++.|++|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999974

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.06  E-value=0.023  Score=51.56  Aligned_cols=33  Identities=36%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|.|||+|..|.+.|..|++.|++|++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            468999999999999999999999999999985

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.05  E-value=0.02  Score=54.19  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+.|.|||+|..|+..|..|++.|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5789999999999999999999999999999863

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.04  E-value=0.0093  Score=56.21  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .++|+|+|+|-.|...|..|.+.|++|+|||++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            5679999999999999999999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.96  E-value=0.023  Score=53.90  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHV  213 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCcc
Confidence            57999999999999999999999999999997654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.93  E-value=0.075  Score=51.92  Aligned_cols=45  Identities=27%  Similarity=0.373  Sum_probs=39.9

Q ss_pred             CCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc
Q 015088            3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS   47 (413)
Q Consensus         3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~   47 (413)
                      .+..+|||+|||+|+.|+..|..|++.|++|++||+++..||...
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence            345579999999999999999999999999999999998876533

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.89  E-value=0.025  Score=53.97  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV  209 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcc
Confidence            357999999999999999999999999999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.89  E-value=0.025  Score=50.54  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ...|+|||+|..|...|..|++.|+  +|+++|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4579999999999999999999998  99999985

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.86  E-value=0.032  Score=50.15  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=32.4

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |+.......|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus         2 m~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            2 MTTKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             ----CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4433445679999999999999999999999999999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.83  E-value=0.026  Score=49.55  Aligned_cols=34  Identities=29%  Similarity=0.548  Sum_probs=30.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+..|.|||+|..|...|..|+ +|++|+++|++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            4578999999999999999999 999999999863

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.82  E-value=0.026  Score=50.23  Aligned_cols=32  Identities=31%  Similarity=0.614  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +.|.|||+|..|...|..|++.|++|++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46999999999999999999999999999975

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.82  E-value=0.031  Score=46.53  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...|.|||+|..|.+.|..|++.|++|++++++..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35799999999999999999999999999998653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.81  E-value=0.021  Score=50.33  Aligned_cols=33  Identities=27%  Similarity=0.563  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            469999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.80  E-value=0.032  Score=49.82  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...|+|||+|..|..+|..|+..|+ +|+|+|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            3579999999999999999999998 999999753

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.79  E-value=0.03  Score=46.84  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            468999999999999999999999999999974

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.78  E-value=0.029  Score=49.29  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||+|..|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            49999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.72  E-value=0.026  Score=52.38  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+.|.|||+|..|+..|..|++ |++|+++|++.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            4589999999999999999998 99999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.70  E-value=0.029  Score=52.80  Aligned_cols=34  Identities=29%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|||.|.+|+++|..|.++|++|++.|.+.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            4579999999999999999999999999999864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.70  E-value=0.021  Score=50.42  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|.|||.|..|...|..|++.|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45899999999999999999999999999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.66  E-value=0.028  Score=53.77  Aligned_cols=36  Identities=11%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+..
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            357999999999999999999999999999997654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.62  E-value=0.04  Score=48.94  Aligned_cols=33  Identities=30%  Similarity=0.536  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...|.|||+|..|.++|+.|+..|+ +|+|+|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            4579999999999999999999999 99999986

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.58  E-value=0.019  Score=49.63  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||||-.|...|..|.+.|.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4679999999999999999999999999999854

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.57  E-value=0.032  Score=50.67  Aligned_cols=32  Identities=31%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|.|||+|..|...|..|++.|++|++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57999999999999999999999999999975

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.55  E-value=0.033  Score=52.24  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ++|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.52  E-value=0.035  Score=51.86  Aligned_cols=36  Identities=11%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...++.|||.|..|+..|..|+++|++|+++|++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999999754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.52  E-value=0.034  Score=51.65  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+..|+|||.|..|+.+|..|+++|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34689999999999999999999999999999764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.51  E-value=0.08  Score=50.48  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~---g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|++.   |.+|+|+++.+..
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            5799999999999999999999   9999999997654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.41  E-value=0.045  Score=51.16  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            579999999999999999999999999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.38  E-value=0.045  Score=48.64  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|.|||.|..|...|..|++.|++|++++++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4679999999999999999999999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.37  E-value=0.039  Score=52.19  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            57999999999999999999999999999997654

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.35  E-value=0.029  Score=50.01  Aligned_cols=32  Identities=25%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc-----C-CcEEEEcc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR-----G-QKTLLLEQ   38 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~-----g-~~V~liE~   38 (413)
                      +++|.|||+|..|...|..|++.     | ++|+++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            35899999999999999999999     9 99999987

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.35  E-value=0.04  Score=52.14  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+|+|+.+..
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRC  209 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcc
Confidence            357999999999999999999999999999997654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.34  E-value=0.043  Score=48.93  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=30.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ....|.|||+|..|.++|+.|+..|+  +++++|..
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            35689999999999999999999987  89999974

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.31  E-value=0.03  Score=52.71  Aligned_cols=35  Identities=26%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc-CC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR-GQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~-g~-~V~liE~~~~   41 (413)
                      ...|.|||+|..|+..|..|+++ |+ +|+++|++..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35799999999999999999999 99 9999998754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.29  E-value=0.046  Score=48.92  Aligned_cols=33  Identities=21%  Similarity=0.488  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|+|||+|..|..+|..|++.|+ +|+|+|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            579999999999999999999999 999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.27  E-value=0.028  Score=52.72  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..|.|||.|.+|+++|..|+++|++|++.|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            46999999999999999999999999999987644

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.20  E-value=0.04  Score=47.21  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            3579999999999999999999997 8999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.18  E-value=0.039  Score=52.18  Aligned_cols=34  Identities=24%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .+|+|||+|.+|+-+|..|++.|.+|+|++++..
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            5799999999999999999999999999998654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.15  E-value=0.045  Score=48.53  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++|+|||+|..|.+.|..|+ .|.+|++++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECC
Confidence            47999999999999999999 99999999985

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.15  E-value=0.047  Score=48.33  Aligned_cols=32  Identities=41%  Similarity=0.688  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      .|+|||+|..|.+.|+.|+..|+  +|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            59999999999999999999998  999999763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.07  E-value=0.044  Score=52.21  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||||..|+-+|..|++.|.+|+|+++.+..
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTI  233 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccc
Confidence            357999999999999999999999999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.07  E-value=0.047  Score=48.71  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=29.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|.|||+|..|...|..|++.|++|+++ ++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~   50 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR   50 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence            357999999999999999999999999999 64

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.05  E-value=0.053  Score=50.19  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +.+|+|||.|..|..+|..|.+.|++|++||++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999874

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.95  E-value=0.054  Score=51.41  Aligned_cols=35  Identities=31%  Similarity=0.359  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|++.|.+|+|+++.+..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV  222 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcc
Confidence            57999999999999999999999999999997654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=93.94  E-value=0.055  Score=50.26  Aligned_cols=36  Identities=33%  Similarity=0.464  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|.+.|.+|+++++.+..
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            357999999999999999999999999999997654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.94  E-value=0.065  Score=44.71  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|.|||+|..|...|..|++.|++|++++++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999985

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.91  E-value=0.052  Score=52.71  Aligned_cols=35  Identities=37%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            47999999999999999999999999999997644

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=93.91  E-value=0.058  Score=49.93  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+-+|..|.+.|.+|+++++.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            57999999999999999999999999999997654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.90  E-value=0.055  Score=48.65  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|.|||+|..|...|..|++.|++|++++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999985

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.90  E-value=0.061  Score=50.87  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.88  E-value=0.058  Score=50.86  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999853

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.87  E-value=0.06  Score=45.99  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|||+|..|...|..|++.|++|++++++.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4679999999999999999999999999999863

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.86  E-value=0.063  Score=49.11  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.81  E-value=0.044  Score=51.29  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|+..|..|++.|++|+++|++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999853

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.79  E-value=0.061  Score=47.18  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||.|..|...|..|++.|++|++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            369999999999999999999999999999864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.78  E-value=0.081  Score=47.10  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|||+|..|...|..|++.|++|++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3679999999999999999999999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.76  E-value=0.051  Score=51.09  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCc-EEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~~   40 (413)
                      .+|+|||+|.+|+-+|..|++.|.+ |+|++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~  246 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG  246 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCC
Confidence            5799999999999999999999999 99999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.72  E-value=0.048  Score=51.53  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~   40 (413)
                      ..|.|||.|..|+..|..|++.  |++|+++|++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5799999999999999999999  89999999863

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.63  E-value=0.021  Score=48.02  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|.|||.|..|.+.|..|.++|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            467999999999999999999999999999984

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=93.63  E-value=0.076  Score=47.25  Aligned_cols=34  Identities=29%  Similarity=0.572  Sum_probs=29.9

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ....|+|||+|..|.+.|+.|+..|.  +|+++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999998875  79999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.63  E-value=0.057  Score=48.50  Aligned_cols=30  Identities=30%  Similarity=0.477  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      .|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            499999999999999999999999999998

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=93.62  E-value=0.06  Score=51.29  Aligned_cols=36  Identities=19%  Similarity=0.175  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc---CCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR---GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~---g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.   |.+|+|+|+.+..
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            35799999999999999999999   9999999997654

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.62  E-value=0.063  Score=48.60  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..+|+|+|||.+|+.+|..|...|. +|+++|+..
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999999 999999974

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.57  E-value=0.069  Score=48.38  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|.|||.|..|...|..|++.|++|++++++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999999863

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.57  E-value=0.072  Score=46.08  Aligned_cols=33  Identities=18%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCc-EEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQK-TLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~-V~liE~~   39 (413)
                      ...|.|||+|..|...|..|++.|++ |.+++++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~   43 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT   43 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            46899999999999999999999998 8899874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.56  E-value=0.064  Score=48.64  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||+|.+|..+|..|...|.+|+++|++.
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.55  E-value=0.064  Score=48.02  Aligned_cols=33  Identities=12%  Similarity=-0.050  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHH-HHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSS-AAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~-~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||.|.+|++ +|..|.++|++|++.|+..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~   38 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM   38 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            47999999999997 8889999999999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.53  E-value=0.074  Score=47.21  Aligned_cols=32  Identities=31%  Similarity=0.716  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~   40 (413)
                      +|+|||+|..|...|..|++.  |.+|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            599999999999999999985  78999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.44  E-value=0.062  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|.|||+|..|...|..|++.|++|++++++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            457999999999999999999999999999875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.40  E-value=0.088  Score=46.88  Aligned_cols=34  Identities=15%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..+|.|||+|..|.++|+.|+..|+ +|+|+|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            3579999999999999999999998 999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.34  E-value=0.078  Score=50.95  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|..|+.+|..|++.|.+|+|+|+.+..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            57999999999999999999999999999997654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.34  E-value=0.078  Score=50.25  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  215 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF  215 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence            357999999999999999999999999999997654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=93.32  E-value=0.064  Score=47.01  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999864

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.30  E-value=0.076  Score=48.00  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ....|+|+|||.+|..+|..|...|. +|+++|+..
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~G  226 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG  226 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            35689999999999999999999998 899999963

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.29  E-value=0.079  Score=46.31  Aligned_cols=35  Identities=37%  Similarity=0.498  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4789999999999999999999997 8999998654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.29  E-value=0.1  Score=45.60  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..|+|.|+|..|..++..|.++|++|+++.+...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999998643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.24  E-value=0.074  Score=47.26  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...|.|||.|..|...|..|++.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4679999999999999999999999 99999985

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.20  E-value=0.093  Score=50.07  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHV  217 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            357999999999999999999999999999997654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.20  E-value=0.093  Score=46.55  Aligned_cols=35  Identities=23%  Similarity=0.552  Sum_probs=31.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...|+|.|| |..|..++.+|.++|++|+++.+...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            467999999 99999999999999999999998654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.18  E-value=0.082  Score=43.90  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=28.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|.||| +|..|...|..|++.|++|++++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            489999 9999999999999999999999874

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.17  E-value=0.078  Score=47.29  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=29.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      .|.|||+|..|.+.|..|++.|+  +|+++|++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            59999999999999999999999  99999985

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.14  E-value=0.075  Score=47.41  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||.|..|...|..|++.|++|++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            579999999999999999999999999999863

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.13  E-value=0.097  Score=46.40  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|+|||+|..|..+|+.|+..|+ +|+|+|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            469999999999999999999997 999999753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.11  E-value=0.037  Score=46.91  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=29.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ....|+|+|+|..|...|..|.+.|+ |+++|++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            34579999999999999999999999 99999874

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.10  E-value=0.06  Score=45.11  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEE-Eccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLL-LEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~l-iE~~   39 (413)
                      ..|.|||+|..|...|..|++.|++|++ ++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            5799999999999999999999999998 7765

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.04  E-value=0.1  Score=46.45  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            4689999999999999999999997 8999998754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.02  E-value=0.064  Score=49.54  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            49999999999999999999 99999999863

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.01  E-value=0.091  Score=51.28  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcc
Confidence            57999999999999999999999999999987654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.98  E-value=0.096  Score=46.60  Aligned_cols=33  Identities=24%  Similarity=0.473  Sum_probs=29.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ..+|+|||+|-.|.++|+.|+..|.  ++.|+|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999885  89999864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.97  E-value=0.12  Score=45.30  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=30.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||+ |..|...|..|++.|++|++++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            47999999 999999999999999999999975

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.96  E-value=0.033  Score=43.12  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|||+|..|...|..|.+.|.+|+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            47999999999999999999999999999875

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=92.87  E-value=0.12  Score=45.88  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|.|||+|..|.++|+.|+..|+ +|+|+|...
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            579999999999999999999988 999999864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.86  E-value=0.11  Score=44.73  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..++|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.83  E-value=0.11  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      .+|+|||||.+|+-+|..+.+.|. +|++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDR  299 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCS
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCc
Confidence            579999999999999999999998 5999998754

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.78  E-value=0.1  Score=46.42  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~   40 (413)
                      ..|.|||.|..|...|..|++.| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999874

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.75  E-value=0.1  Score=49.29  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +.+|.|||.|..|...|..|+++|++|++++++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.72  E-value=0.1  Score=45.80  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|+|||+|..|.++|+.|++.|+  +|+|+|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            59999999999999999999998  899999753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=92.67  E-value=0.09  Score=49.80  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~   40 (413)
                      ..|.|||.|..|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            5799999999999999999998  78999999753

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=92.65  E-value=0.13  Score=48.82  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|.|||.|..|...|..|+++|++|++++++.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.64  E-value=0.14  Score=45.44  Aligned_cols=33  Identities=33%  Similarity=0.439  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      ..|.|||.|..|.+.|..|.+.|+  +|+++|++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            579999999999999999999999  999999864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.64  E-value=0.12  Score=46.18  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC----CcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG----QKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g----~~V~liE~~~   40 (413)
                      .+.|.|||+|..|...|..|++.|    ++|++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            357999999999999999999999    7999998863

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.64  E-value=0.088  Score=44.11  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=30.3

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|| |..|..++.+|.++|++|+++.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            46999995 9999999999999999999999874

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.62  E-value=0.12  Score=45.05  Aligned_cols=31  Identities=32%  Similarity=0.492  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|.|||+|..|.+.|..|.+.|++|++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4899999999999999999999999999875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=92.60  E-value=0.12  Score=44.40  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC----CcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG----QKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g----~~V~liE~~~   40 (413)
                      ..|.|||+|..|.+.|..|++.|    ++|++++++.
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            47999999999999999999999    7999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.60  E-value=0.12  Score=44.79  Aligned_cols=32  Identities=13%  Similarity=0.216  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|+|+|-+|..+|..|++.|.+|++++++
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.59  E-value=0.1  Score=46.25  Aligned_cols=31  Identities=19%  Similarity=0.438  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~   39 (413)
                      .|+|||+|..|...|..|++.|  .+|+++|++
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            6999999999999999999999  699999985

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.54  E-value=0.11  Score=44.72  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~   39 (413)
                      .|.|||+|..|...|..|++.| ++|++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            4999999999999999999999 999999875

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.53  E-value=0.11  Score=45.74  Aligned_cols=34  Identities=24%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      ...|.|||+|..|..+|+.|+.+|+  +|+|+|...
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            3579999999999999999999998  999999865

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.52  E-value=0.11  Score=49.13  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc-CCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~-g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-+|..|++. |.+|+++++.+..
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQI  195 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcc
Confidence            35799999999999999999999 9999999997644

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.49  E-value=0.14  Score=48.18  Aligned_cols=34  Identities=15%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +.+|.|||.|..|...|..|+++|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.46  E-value=0.14  Score=42.60  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|+|+|| |..|..++.+|+++|++|+++.++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRN   33 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcC
Confidence            4999996 999999999999999999999986

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.45  E-value=0.12  Score=45.91  Aligned_cols=35  Identities=29%  Similarity=0.562  Sum_probs=30.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      +++..|+|||+|-.|.+.|+.|+..++  ++.|+|..
T Consensus         3 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345789999999999999999999886  89999974

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.41  E-value=0.13  Score=45.35  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.||| +|..|.+.|..|++.|++|++++++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3799999 99999999999999999999999753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.40  E-value=0.1  Score=45.45  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|+|..|..++..|.++|++|+++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            469999999999999999999999999998853

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.39  E-value=0.14  Score=48.46  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|.|||+|..|...|..|+++|++|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999863

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.31  E-value=0.11  Score=45.84  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||+|..|...|..|++.|++|++++++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence            47999999999999999999999999999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=92.28  E-value=0.14  Score=42.69  Aligned_cols=31  Identities=29%  Similarity=0.469  Sum_probs=29.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|+|+|| |..|..++..|+++|++|+++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4999998 999999999999999999999875

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=92.27  E-value=0.13  Score=45.56  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=30.2

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|| |..|..++..|.++|++|+++.++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   45 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPN   45 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCC
Confidence            46999997 9999999999999999999999864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.24  E-value=0.069  Score=48.69  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|.|||+|..|...|..|++.|++|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            7999999999999999999999999999975

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.22  E-value=0.13  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            579999999999999999999999999999864

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.22  E-value=0.086  Score=47.76  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-------~~V~liE~~~~   41 (413)
                      ..|.|||+|..|.+.|..|++.|       ++|++++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       89999998643

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.22  E-value=0.12  Score=44.24  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=31.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            3689999999999999999999997 8999998653

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=92.19  E-value=0.2  Score=42.49  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=31.5

Q ss_pred             CCCCCCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |.+.-....|+|.|| |..|..+|.+|+++|++|+++.++
T Consensus         1 M~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CccccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            443333456888887 899999999999999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.19  E-value=0.15  Score=50.89  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.16  E-value=0.13  Score=46.65  Aligned_cols=32  Identities=22%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|+|+|.+|..++..|...|.+|++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            57999999999999999999999999999985

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=92.15  E-value=0.19  Score=43.87  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC---cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ---KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~---~V~liE~~~   40 (413)
                      ..|.|||+|..|.+.|..|.+.|+   +|++++++.
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            569999999999999999999998   999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.14  E-value=0.12  Score=47.37  Aligned_cols=34  Identities=12%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g-------~~V~liE~~~~   41 (413)
                      ..|.|||+|..|.+.|..|++.|       ++|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            46999999999999999999999       99999998643

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.11  E-value=0.15  Score=48.18  Aligned_cols=32  Identities=38%  Similarity=0.636  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++|.|||+|..|...|..|+++|++|++++++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36999999999999999999999999999985

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.05  E-value=0.14  Score=45.00  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||+|..|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            49999999999999999999999999999853

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.01  E-value=0.15  Score=45.24  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      .|.|||+|..|.++|+.|+..|+  +++|+|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            59999999999999999999887  899999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.96  E-value=0.16  Score=48.27  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+..|..|++.|.+|+++++.+..
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            357999999999999999999999999999997643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.95  E-value=0.16  Score=47.92  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            457999999999999999999999999999997643

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=91.90  E-value=0.2  Score=47.82  Aligned_cols=59  Identities=17%  Similarity=0.146  Sum_probs=40.9

Q ss_pred             HHHHHHC-CCEEEcCceEEEEEEecccCC-CeEEEEc--CCC-----cEEEcCEEEEcCCCC-hHHhhhhh
Q 015088          160 QTLAIKN-GAVLRDNMEVKTVLKVKDAVK-GGVTVVT--SNG-----EKFWGKKCVVTAGAW-VGKLVKRI  220 (413)
Q Consensus       160 ~~~~~~~-Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~--~~g-----~~i~ad~VV~A~G~~-s~~l~~~~  220 (413)
                      ...++++ +++|++++.|++|..  ++++ ..+.|+.  .+|     .+++|+.||+|+|++ +++++...
T Consensus       233 l~~a~~~~n~~i~~~~~v~~i~~--~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~S  301 (507)
T 1coy_A          233 LAQAAATGKLTITTLHRVTKVAP--ATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSM  301 (507)
T ss_dssp             HHHHHHTTCEEEECSEEEEEEEE--CSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEeCCEEEEEEE--CCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhc
Confidence            3344455 599999999999998  6422 3455554  255     268899999999997 55555443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.85  E-value=0.17  Score=45.04  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ...|.|||+|..|.++|+.|+..|+  +|+|+|..
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            4689999999999999999999997  89999974

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.83  E-value=0.17  Score=45.05  Aligned_cols=34  Identities=35%  Similarity=0.607  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ....|+|||+|..|.++|+.|+..|+  ++.|+|..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            34689999999999999999999987  89999974

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.82  E-value=0.19  Score=47.45  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +.+|.|||.|..|...|..|+++|++|++++++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            367999999999999999999999999999985

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.81  E-value=0.17  Score=44.47  Aligned_cols=32  Identities=28%  Similarity=0.498  Sum_probs=29.5

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|+|.|| |..|...+.+|.++|++|+++-|+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~   34 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKP   34 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4999998 9999999999999999999998754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.81  E-value=0.2  Score=41.06  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=30.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|+|| |..|..++.+|.++|++|+++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            46999998 9999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.78  E-value=0.17  Score=46.46  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|||+|.+|+.+|..|...|.+|+++|++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999999864

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.70  E-value=0.13  Score=47.69  Aligned_cols=33  Identities=27%  Similarity=0.387  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...-|||.|..|+.+|..|+++|++|+++|++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999999999999999999999874

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.69  E-value=0.13  Score=44.66  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|+|+|-+|.++|..|++.|.+|+|++++
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            57999999999999999999999999999886

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=91.68  E-value=0.18  Score=45.72  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .|+|||||..|..+|+.+.+.|++|+++|.+..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            699999999999999999999999999998654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.64  E-value=0.16  Score=44.71  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ..++|||+|-+|..+|..|++.|. +|+|+++.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            579999999999999999999998 99999986

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.62  E-value=0.18  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.422  Sum_probs=30.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|.|| |..|..++.+|+++|++|+++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            357999998 9999999999999999999999863

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.59  E-value=0.17  Score=46.15  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|+|+|..|..+|..|...|.+|++++++
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~  198 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVN  198 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            57999999999999999999999999999975

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.50  E-value=0.21  Score=44.48  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ....|.|||+|..|.++|+.|+.+|.  +++|+|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            34689999999999999999999987  89999975

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.48  E-value=0.17  Score=47.62  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||+|-.|...|..|.+.|.+|+|+++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            357999999999999999999999999999985

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.48  E-value=0.22  Score=42.62  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .++|||+|-+|.++++.|.+.|. +|+|++|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            79999999999999999999998 999999863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.48  E-value=0.19  Score=43.73  Aligned_cols=31  Identities=35%  Similarity=0.503  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      .|.|||+|..|.+.|..|++.|+  +|++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            59999999999999999999998  89999875

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.45  E-value=0.25  Score=42.14  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC----cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ----KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~----~V~liE~~   39 (413)
                      ..|.|||+|..|...|..|.+.|+    +|++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCC
Confidence            369999999999999999999998    99999985

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=91.44  E-value=0.17  Score=45.70  Aligned_cols=35  Identities=23%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~V  153 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQI  153 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcC
Confidence            4679999999999999999999997 8999998643

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.40  E-value=0.099  Score=48.36  Aligned_cols=30  Identities=23%  Similarity=0.231  Sum_probs=27.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHH-cCCcEEEEc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAK-RGQKTLLLE   37 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE   37 (413)
                      ++|.|||+|..|.+.|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            469999999999999999998 499999999

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.33  E-value=0.15  Score=50.80  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999863

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.30  E-value=0.18  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...++|||+|-+|.++|+.|.+.|. +|+|+.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            3579999999999999999999998 899999864

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.29  E-value=0.19  Score=43.71  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|||+|.+|.+.|..|.+.|.+|++++++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            57999999999999999999999999999986

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.26  E-value=0.24  Score=44.40  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ..+|+|||+ |..|.++|+.|+..|.  +|+|+|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            357999998 9999999999999985  89999975

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=91.18  E-value=0.21  Score=47.97  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|+.+|..|++.|. +++|+|.+..
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~V  361 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  361 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            4689999999999999999999997 8999998754

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=91.15  E-value=0.17  Score=43.52  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||+|..|...|..|.+.|++|.+++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            47999999999999999999999999999875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=91.08  E-value=0.17  Score=44.15  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|.|||+|..|...|..|++ |++|++++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~   32 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRT   32 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCC
Confidence            59999999999999999999 9999999875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=91.05  E-value=0.28  Score=41.52  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...++|.|| |..|..+|.+|+++|++|++++++
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            346888887 899999999999999999999875

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.95  E-value=0.19  Score=43.27  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ   38 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~   38 (413)
                      .|.|||+|..|...|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            489999999999999999999999999765

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=90.92  E-value=0.17  Score=45.33  Aligned_cols=33  Identities=33%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~-------~V~liE~~   39 (413)
                      ...|+|+|| |..|..++..|.+.|+       +|+++|..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            357999998 9999999999999886       89999875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.86  E-value=0.22  Score=45.50  Aligned_cols=33  Identities=33%  Similarity=0.407  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||+|.+|..+|..|...|.+|+++|++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~  200 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN  200 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            357999999999999999999999999999975

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=90.83  E-value=0.22  Score=47.86  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~V  362 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV  362 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            4689999999999999999999998 8999998654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.82  E-value=0.29  Score=42.10  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CCCCCCcccEEEECC-CH--HHHHHHHHHHHcCCcEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGA-GI--MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGa-G~--aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |.+.-....++|.|| |.  .|..+|..|+++|.+|+++.+..
T Consensus         1 M~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            1 MNFSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCSCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CccccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            443333456889997 45  89999999999999999998753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.82  E-value=0.27  Score=44.11  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|.|||.|..|.+.|..|++.|++|++.++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~   48 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRS   48 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECC
Confidence            46999999999999999999999999999875

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=90.79  E-value=0.17  Score=45.25  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~-------~V~liE~~   39 (413)
                      ..+|+|||| |..|...++.|...|+       +|.++|..
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            468999998 9999999999999885       79999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=90.79  E-value=0.14  Score=44.94  Aligned_cols=32  Identities=31%  Similarity=0.521  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..|++.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            469999999999999999999999999998 53

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.73  E-value=0.27  Score=43.54  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            3579999999999999999999998 89999886

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.72  E-value=0.19  Score=50.03  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|+.++..|++|+|+|...
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            579999999999999999999999999999764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=90.72  E-value=0.28  Score=42.76  Aligned_cols=33  Identities=33%  Similarity=0.416  Sum_probs=29.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC
Confidence            3579999999999999999999998 69999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.66  E-value=0.18  Score=44.45  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             cccEEEECCC-HHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAG-IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG-~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+++|||+| +.|..+|..|...|.+|++++++
T Consensus       177 gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          177 GKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            4689999999 67999999999999999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.63  E-value=0.3  Score=43.65  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=30.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...|+|.|| |..|..++.+|+++|++|+++++...
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            457999985 99999999999999999999998643

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.61  E-value=0.25  Score=47.89  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|+|+|-.|...|..|.+.|++|++||++...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            67999999999999999999999999999998654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=90.54  E-value=0.32  Score=43.42  Aligned_cols=33  Identities=30%  Similarity=0.265  Sum_probs=29.9

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|.|| |..|..++.+|.++|++|+++.+.
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999998 999999999999999999999874

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.54  E-value=0.3  Score=42.07  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .++|||+|-+|...|..|.+.|.+|+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            7999999999999999999999999999975

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.49  E-value=0.17  Score=50.80  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.9

Q ss_pred             ccEEEEC--CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVG--AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIG--aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4799998  99999999999999999999999876

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.47  E-value=0.058  Score=50.42  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~   40 (413)
                      +|+|||||++|+++|.+|++.+  ++|+|||+++
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            6999999999999999999875  7999999864

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=90.47  E-value=0.3  Score=42.21  Aligned_cols=33  Identities=18%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       120 ~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A          120 NRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3579999999999999999999996 89999885

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=90.37  E-value=0.19  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +|-+||-|..|...|..|.++|++|+++|++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            699999999999999999999999999998653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=90.33  E-value=0.25  Score=42.97  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=30.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...++|+|+|-+|.++|+.|.+.|. +|+|+.|..
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            3579999999999999999999998 899998863

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.31  E-value=0.27  Score=44.22  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V   71 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQV   71 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence            4689999999999999999999998 8999997654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=90.25  E-value=0.28  Score=45.53  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~V   75 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   75 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEe
Confidence            4689999999999999999999998 8999997643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=90.23  E-value=0.39  Score=39.91  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             cEEEECC-CHHHHHHHHHHH-HcCCcEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLA-KRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~-~~g~~V~liE~~~   40 (413)
                      .|+|+|| |..|..+|..|+ +.|++|+++.++.
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCc
Confidence            3999995 999999999999 8999999999863

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=90.22  E-value=0.3  Score=43.14  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .|.|||+|..|.+.|+.|+..++ +|.|+|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999998888 699999863

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=90.18  E-value=0.31  Score=43.72  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CcccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ....|+|.|| |..|..++..|.++|++|+++.+...
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            3468999998 99999999999999999999998653

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=90.17  E-value=0.31  Score=43.40  Aligned_cols=35  Identities=34%  Similarity=0.580  Sum_probs=30.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      +++.+|+|||+|-.|.++|+.|+..++  ++.|+|..
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            345789999999999999999998876  89999974

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=90.17  E-value=0.26  Score=43.12  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|.|||+|-.|.++|+.|..++.  ++.|+|...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            59999999999999999998875  799999753

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=90.05  E-value=0.31  Score=41.23  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             CCCCCCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            1 MEFPGEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         1 m~~~~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      |..+.....++|.|| |-.|..+|.+|+++|++|++++++..
T Consensus         1 M~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            1 MAASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             -----CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCccCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            433333446888875 68899999999999999999998753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=89.97  E-value=0.21  Score=43.64  Aligned_cols=31  Identities=23%  Similarity=0.460  Sum_probs=28.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|+|+|-+|.++|..|++.| +|++++++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            46999999999999999999999 99999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=89.91  E-value=0.31  Score=42.36  Aligned_cols=33  Identities=12%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       126 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~  159 (281)
T 3o8q_A          126 GATILLIGAGGAARGVLKPLLDQQPASITVTNRT  159 (281)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             CCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC
Confidence            3579999999999999999999996 89999885

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.90  E-value=0.31  Score=45.63  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..++|+|+|..|..+|..|+..|.+|++.|++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            56999999999999999999999999999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=89.80  E-value=0.29  Score=42.75  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~   39 (413)
                      ..|.|||+|..|.+.|..|++.  |.+|++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            4699999999999999999988  6789999875

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=89.78  E-value=0.41  Score=40.96  Aligned_cols=35  Identities=29%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ...++|.|| |-.|..+|.+|+++|.+|++++++..
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            345777776 68899999999999999999998653

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=89.77  E-value=0.31  Score=42.18  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ..++|||+|-+|.++++.|.+.|. +|+|+.|.
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            579999999999999999999997 89999886

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=89.76  E-value=0.32  Score=42.80  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|.|||+|.+|..+|..|...|.+|+++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            357999999999999999999999999999985

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=89.70  E-value=0.44  Score=40.98  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=30.0

Q ss_pred             CCCCCCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |..|-....++|.|| |-.|..+|..|+++|++|++++++
T Consensus         1 M~~m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (267)
T 2gdz_A            1 MAHMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   40 (267)
T ss_dssp             -CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECC
Confidence            443323345888876 788999999999999999999875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=89.68  E-value=0.37  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...++|+|+|-+|.++|+.|++.|. +|+|+.|.
T Consensus       148 gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          148 GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            3579999999999999999999998 79999885

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=89.64  E-value=0.25  Score=43.81  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=28.9

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcC--CcEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRG--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g--~~V~liE~~~   40 (413)
                      +|+|||+ |..|..+|+.|++.|  .+|+++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            5999998 999999999999888  6899999864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=89.61  E-value=0.34  Score=42.50  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|.|||.|.+|..+|..|...|.+|+++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            357999999999999999999999999999985

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=89.59  E-value=0.44  Score=43.10  Aligned_cols=34  Identities=24%  Similarity=0.620  Sum_probs=30.0

Q ss_pred             cccEEEECC-CHHHHHHHHHHHH--cCCcEEEEcccC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAK--RGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~--~g~~V~liE~~~   40 (413)
                      ...|+|.|| |..|..++..|++  .|++|+++++..
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~   46 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFR   46 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence            457999976 9999999999999  899999999854

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=89.48  E-value=0.36  Score=41.12  Aligned_cols=40  Identities=28%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             CCCCCCcccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            1 MEFPGEKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         1 m~~~~~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |.+.....-++|.|| |-.|..+|..|+++|.+|++++++.
T Consensus         1 M~~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            1 MSLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             ----CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             CcccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            443333345777776 7889999999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	7e-20
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-10
d2gf3a2	104	d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus s	8e-19
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	4e-18
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	1e-13
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-05
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	2e-11
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	4e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	3e-09
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	9e-09
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-08
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	2e-08
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-08
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-08
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	8e-08
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	8e-08
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	4e-07
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	7e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-06
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-06
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-06
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	3e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	7e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-05
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-05
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-05
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-05
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	3e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	3e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	5e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	6e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	6e-05
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	6e-05
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	7e-05
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	9e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	9e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	1e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-04
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	3e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	4e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	5e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	8e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	8e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.002
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 87.1 bits (214), Expect = 7e-20
 Identities = 71/214 (33%), Positives = 104/214 (48%), Gaps = 6/214 (2%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPED-YYHP 66
           FDVIVVGAG MG +A YQLAK+G KTLL++ FD  H  GS HG++R IR  Y E   Y P
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVP 63

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
           + L S  LW + + E  +K++ K      GP    +  +      K       L     +
Sbjct: 64  LALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEI 123

Query: 127 EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV 186
            K    I +PEN+  +     GV+     +  ++ LA   GA +  +  V+      D  
Sbjct: 124 NKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDF----DIS 179

Query: 187 KGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI 220
              V + T+NG  +   K +V+ GAW  KL+ ++
Sbjct: 180 PDSVKIETANGS-YTADKLIVSMGAWNSKLLSKL 212

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 346 EDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF 391
            +VV+A GFSGHGFK +  VG +L+ L L+G+ +  ++  F I+R 
Sbjct: 230 SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTE-HDISIFSINRP 274

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 104

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 79.2 bits (195), Expect = 8e-19
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 9/108 (8%)

Query: 227 IQAVETTVCYWRIKEGNEADYAVGGDFPSF-ASYGDPYIYGTPSLEYPGLIKIALHGGYP 285
           +Q     V ++   E     Y+   DFP F     +   YG PS    GL       G  
Sbjct: 1   LQPYRQVVGFFESDES---KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQK 57

Query: 286 CDPD--RRPWGPGL-LLDSLKEWIQGRFAGRVDSNGPVATQLCMYSIT 330
            DPD   R +G       +L+ +++    G           +CMY+ T
Sbjct: 58  IDPDTINREFGVYPEDESNLRAFLEEYMPGANGE--LKRGAVCMYTKT 103

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 82.1 bits (201), Expect = 4e-18
 Identities = 31/209 (14%), Positives = 58/209 (27%), Gaps = 5/209 (2%)

Query: 9   DVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
            ++++GAGI+G++ A +L  RG     +L+Q       GS+      +  T P       
Sbjct: 3   RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASF 62

Query: 68  VLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLE 127
              +         +                    +                 L      +
Sbjct: 63  AKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQ 122

Query: 128 KYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVK 187
           +    ++      G+     G+    +AV +        G   R +  V  + +    V 
Sbjct: 123 ELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVT 182

Query: 188 GGVTVVTSNGEKFWGKKCVVTAGAWVGKL 216
           G  T              V  AG W  K+
Sbjct: 183 GVQT----ADGVIPADIVVSCAGFWGAKI 207

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
             ++ +V+G GI+GS+ AY LAK  + T L E         ++   +  + A    +   
Sbjct: 3   RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGG--RTTSAAAGMLGAHAECEERD 60

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
                +       +                       L        +      +      
Sbjct: 61  AFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWY 120

Query: 126 LEKYSGRIEIPENW---VGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKV 182
            ++     E   +         +    ++P      +   A   GA + ++  V  V + 
Sbjct: 121 SKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD 180

Query: 183 KDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKR 219
            +     + + T +G+  W    VV +G W G   K+
Sbjct: 181 GE----ALFIKTPSGD-VWANHVVVASGVWSGMFFKQ 212

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 348 VVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISR 390
           ++ A G   +G  +APA G +++DL+++ E     L  FRI R
Sbjct: 233 ILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDR 275

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 61.4 bits (148), Expect = 2e-11
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 8/184 (4%)

Query: 10  VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
           V+V+GAG++G S A  + +R    L          R +    +  + A   + Y      
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTD-VAAGLWQPYTSEPSN 61

Query: 70  ESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKY 129
                W Q             +  +MG +          +         VL  R++  + 
Sbjct: 62  PQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPRE 121

Query: 130 SGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG 189
              +++  ++         +++  K +        + G         + V   ++  +GG
Sbjct: 122 ---LDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFL----RKVESFEEVARGG 174

Query: 190 VTVV 193
             V+
Sbjct: 175 ADVI 178

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.3 bits (139), Expect = 4e-10
 Identities = 15/99 (15%), Positives = 34/99 (34%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           E++DVIV+G G+     +  ++  G+K L +++  +     SS      +   +      
Sbjct: 5   EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGP 64

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLR 104
           P  +     W             +  +  +     + L 
Sbjct: 65  PETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLD 103

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +DVIV+G GI     +  L+  G+K L +++ D     G   GE+ ++  +   + + 
Sbjct: 4  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY---G---GEAASVTLSQLYEKFK 57

Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDM 95
             +       +   +  + V         
Sbjct: 58 QNPISKEERESKFGKDRDWNVDLIPKFLMA 87

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 36/206 (17%), Positives = 60/206 (29%), Gaps = 41/206 (19%)

Query: 7   KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHP 66
            +DVIV+G G  G  AA   A+ G   LLL++ + L  + +  G  R             
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGR------------- 48

Query: 67  MVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVL 126
                C +  +   +   K      +F        +   +I       V  +  D  ++ 
Sbjct: 49  -----CNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMF 103

Query: 127 EKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAV 186
              +    +                    V    T     G  +R N  V+T+       
Sbjct: 104 PVSNKAQSV--------------------VDALLTRLKDLGVKIRTNTPVETIEYENGQT 143

Query: 187 KGGVTVVTSNGEKFWGKKCVVTAGAW 212
           K    V+   GE       V+  G  
Sbjct: 144 KA---VILQTGEVLETNHVVIAVGGK 166

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 27/262 (10%), Positives = 55/262 (20%), Gaps = 28/262 (10%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +  V+V+G+G++G S+A  LA++G    +L +        SS   +          +  
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP--EDVSSQTFASPWAGANWTPFMT 62

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
                    WE++  +      +            K  R    +                
Sbjct: 63  LTDGPRQAKWEESTFK-----KWVELVPTGHAMWLKGTRRFAQNEDGLLGHWY---KDIT 114

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
                             T     +   K          K GA                 
Sbjct: 115 PNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERR------------ 162

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGNEA 245
                TV +           V   G     +           +     +     +  +  
Sbjct: 163 -----TVTSLEQAFDGADLVVNATGLGAKSIAGIDDQARGGPRVEAERIVLPLDRTKSPL 217

Query: 246 DYAVGGDFPSFASYGDPYIYGT 267
               G    +        ++  
Sbjct: 218 SLGRGSARAAKEK-EVTLVHAY 238

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 54.2 bits (129), Expect = 9e-09
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY 63
          P E   V+VVGAG  G +A+    K G   +L+++  F    G+S   +  + A   +  
Sbjct: 16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS--GGNSMISAGGMNAVGTKQQ 73

Query: 64 YHPMVLESCLLWEQ 77
              V +    + +
Sbjct: 74 TAHGVEDKVEWFIE 87

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 16/88 (18%), Positives = 31/88 (35%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
          +D I+VG+G+ G+  A +L K  +K L++E+ + +     +          Y    +H  
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTN 61

Query: 68 VLESCLLWEQAQSEIGYKVYFKAHQFDM 95
                          +     A   D 
Sbjct: 62 DKYIWDYVNDLVEFNRFTNSPLAIYKDK 89

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          M+ P  +FD +V+GAG  G  AA Q+++ GQ   LL +
Sbjct: 1  MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSK 38

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 52.7 bits (125), Expect = 3e-08
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 4   PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDY 63
             E  DV+++G+G  G +AA      G K +LLE+       G++   +  + A   +  
Sbjct: 20  VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP--GGNTKLAAGGMNAAETKPQ 77

Query: 64  YHPMVLESCLLWEQAQSEIGYKVYFKAHQFDM 95
               + +   +      + G  +        +
Sbjct: 78  AKLGIEDKKQIMIDDTMKGGRNINDPELVKVL 109

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
          P +  DV+VVG+G  G SAA      G K +L+E+   +   G++ 
Sbjct: 13 PHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI--GGNAK 56

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 51.5 bits (122), Expect = 8e-08
 Identities = 13/62 (20%), Positives = 25/62 (40%)

Query: 5  GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYY 64
          G++   +V+G+G  G+ AA +L + G  T ++E        GS       +        +
Sbjct: 5  GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

Query: 65 HP 66
            
Sbjct: 65 LA 66

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 50.7 bits (120), Expect = 8e-08
 Identities = 32/206 (15%), Positives = 63/206 (30%), Gaps = 42/206 (20%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           +  + I++GAG  G   A QLAK G+   + +        G   G    +      ++ +
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFD-------NGKKIGRKILMSGGGFCNFTN 55

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
             V  +  L +                          ++S +A          V +    
Sbjct: 56  LEVTPAHYLSQNPH----------------------FVKSALARYTNWDFISLVAEQGIT 93

Query: 126 LEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA 185
             +        +                + V M ++   K GA +    EV  V ++++ 
Sbjct: 94  YHEKELGQLFCDEG------------AEQIVEMLKSECDKYGAKILLRSEVSQVERIQND 141

Query: 186 VKGGVTVVTSNGEKFWGKKCVVTAGA 211
            K    V+  N  ++  K  +V  G 
Sbjct: 142 EKVR-FVLQVNSTQWQCKNLIVATGG 166

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.4 bits (116), Expect = 4e-07
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
          +V VVG GI G + A+ L  RG   +LLE    L     +H
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH 42

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          DV+VVG GI G +AA  L   G   ++LE  D +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          + V++VGAG  G+  A+ LA++G +  LL Q
Sbjct: 3  YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQ 33

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG 50
          K  V ++GAG  G      L K G   ++LE+    +  G    
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRA 45

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS 48
          +  D +V+G G+ G  AA    ++G  T++L        R  S
Sbjct: 4  QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK--RSHS 44

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 15/87 (17%), Positives = 29/87 (33%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            +V+G G   + +A +L + G +TL+LE     +  G        +        +    
Sbjct: 4  PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNR 63

Query: 69 LESCLLWEQAQSEIGYKVYFKAHQFDM 95
           E+ L        +   +   A   D 
Sbjct: 64 TEAPLGSFLWLDVVNRNIDPYAGVLDR 90

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          K+DV++VG+G +G + A +L   G K  + +
Sbjct: 4  KYDVVIVGSGPIGCTYARELVGAGYKVAMFD 34

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 1  MEFPGEKFDVIVVGAGIMGSSAAYQLAK------RGQKTLLLEQ 38
          ME   E+ DV++VGAG  G SAA +L +      +  +  L+E+
Sbjct: 26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEK 69

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
           V++VGAG+ G SAAY LA  G +  +LE  +  
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 21/139 (15%), Positives = 37/139 (26%), Gaps = 2/139 (1%)

Query: 8   FDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDFLHHRGSSHGES-RTIRATYPEDYYH 65
            D+++ GAGI G S A  L + G  K  LLE    +   G         + A        
Sbjct: 2   IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGP 61

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
            +   +    E    +      +   +     +            +   +        Q 
Sbjct: 62  ALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQ 121

Query: 126 LEKYSGRIEIPENWVGVAT 144
             +    +E  E   G   
Sbjct: 122 AVRTGLGVERIEERDGRVL 140

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 45.8 bits (107), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           +KFDVIV+GAG  G  AA + A+ G KT L+E             + +  +        +
Sbjct: 2   QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIE-----------KYKGKEGKTALGGTCLN 50

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
              + S  L + +         FK H    G     ++       RK+ +   +      
Sbjct: 51  VGCIPSKALLDSSYKFHEAHESFKLHGISTG---EVAIDVPTMIARKDQIVRNLTGGVAS 107

Query: 126 LEKYSGRIEIPENW 139
           L K +G      + 
Sbjct: 108 LIKANGVTLFEGHG 121

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
          +++VGAG  G+    QLA++G +  +++Q D   H G   G S   R +      H  
Sbjct: 5  ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD---HIG---GNSYDARDSETNVMVHVY 56

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          V V+GAG+ G +AAY+L   G    + E     
Sbjct: 4  VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
           VI++G+G+ G +AA QL   G    LLE  D +
Sbjct: 7  KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD 40
          P E+ DV+VVGAG  G  A Y+L + G+   ++E   
Sbjct: 4  PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG 40

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          ++ DV+++G G  G  AA + A+ G KT  +E+   L     + G   +    +    YH
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 61

Query: 66 PM 67
            
Sbjct: 62 EA 63

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKR-GQKTLLLEQFDFL 42
          + DV+VVGAG  G SAAY+++K    +  ++EQ    
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKT-LLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
           VIVVGAG+ G SAA +L++ G    L+LE  D +  R      +               
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 68 VLESCLLWEQAQSEIGYKVYFKAHQFD 94
            +   +W    S +  + +     + 
Sbjct: 62 GGKMNPIWPIVNSTLKLRNFRSDFDYL 88

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +D I+VGAG  G  AA +L++ G+K LLLE
Sbjct: 3  YDYIIVGAGPGGIIAADRLSEAGKKVLLLE 32

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 12/90 (13%), Positives = 32/90 (35%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            +D++V+GAG  G  A +  A   +K + +      H          T           
Sbjct: 2  RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKL 61

Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDM 95
           +   + +   +  +  G+++  ++ + + 
Sbjct: 62 MVTGANYMDTIRESAGFGWELDRESVRPNW 91

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
          +  DV+++G G  G  AA + A+ G  T  +E+      RG   G    +     +   +
Sbjct: 4  KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK------RGKLGGTCLNVGCIPSKALLN 57

Query: 66 PMVLESCLLWEQAQSEIGYKVYFKAHQFDM 95
             L   +  E  +  I      K +  + 
Sbjct: 58 NSHLFHQMHTEAQKRGIDVNGDIKINVANF 87

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 4  PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          P    DV+++G+G  G S A +LA +  + ++L 
Sbjct: 4  PEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLS 36

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 13/87 (14%), Positives = 30/87 (34%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM 67
          FD+I++G G  G +AA + AK  +K ++L+         +       +            
Sbjct: 4  FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQ 63

Query: 68 VLESCLLWEQAQSEIGYKVYFKAHQFD 94
                  + +++          H ++
Sbjct: 64 AALLGQALKDSRNYGWKLEDTVKHDWE 90

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL 42
          +DV+V+G G  G SAA+  A  G K  ++E++  L
Sbjct: 7  YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 3/134 (2%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
           + FD++V+GAG  G  AA+  A   +K + +     +H          T           
Sbjct: 2   KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKL 61

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
            +     +   +  +  G++      + +          +V+     N    ++    + 
Sbjct: 62  MVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVL---NINKSYDEMFRDTEG 118

Query: 126 LEKYSGRIEIPENW 139
           LE + G   +    
Sbjct: 119 LEFFLGWGSLESKN 132

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 41.9 bits (97), Expect = 6e-05
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 6   EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYH 65
            ++D I +G G  G   +  L   G + L+++++ FL       G S    A  P     
Sbjct: 41  REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL-------GGSCPHNACVP----- 88

Query: 66  PMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV 125
                  L  + A   +  + +   + F     +   ++ V+   R        +   Q 
Sbjct: 89  -----HHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQS 143

Query: 126 LEKYSGRIEI 135
            E+ +    +
Sbjct: 144 KEQLNLEYIL 153

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 2  EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
          +  G   D I+ G G+ G + A +L +    + L++E
Sbjct: 12 DVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIE 48

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
           + VVG  I G +AA  L   G    + E+
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVYER 35

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +D+IV+G G  G +AA + A+   K  L+E
Sbjct: 2  YDLIVIGGGSGGMAAARRAARHNAKVALVE 31

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 2  EFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKT-LLLE 37
          +  G+ +D I+ G G+ G + A +L +  +   L++E
Sbjct: 19 KVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          + + +VVGAG  G  AA + A+ GQK  ++E
Sbjct: 3  ETETLVVGAGPGGYVAAIRAAQLGQKVTIVE 33

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
           +D I +G G  G ++  + A  GQK  L+E
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMYGQKCALIE 32

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
            +D +V+G G  G ++A + A+ G +  ++E
Sbjct: 2  ASYDYLVIGGGSGGLASARRAAELGARAAVVE 33

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 18/125 (14%)

Query: 9   DVIVVGAGIMGSSAAYQLA-----KRGQKTLLLEQFDFLHHRGSSHG-ESRTIRATYPED 62
           DV++VGAG  G  AA  L+     K   K  ++++     + G + G + RT+       
Sbjct: 9   DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLE------ 62

Query: 63  YYHPMVLESCLLWEQAQSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDC 122
                 L++  L ++  SE    +   A          +    +  +    S  HQV+  
Sbjct: 63  -----SLKNLGLADKILSE-ANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLH 116

Query: 123 RQVLE 127
           +  +E
Sbjct: 117 QGRIE 121

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQ 38
          +  ++++G G  G  AA +  + G  T+L+E 
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG 36

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 2/85 (2%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVL 69
          V V+G G+MG+  A   A  G   +L++Q + +  +     E    +    +   +P   
Sbjct: 7  VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPK-- 64

Query: 70 ESCLLWEQAQSEIGYKVYFKAHQFD 94
                E+  S I       +    
Sbjct: 65 AGDEFVEKTLSTIATSTDAASVVHS 89

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLE 37
          + D+ +VGAG  G  AA   A+     K  L+ 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 10 VIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMV 68
            V+GAGIMG   AYQ A +G   L+ +  +    +G +      +            +
Sbjct: 7  AAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKM 65

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKRGQKTLLLE 37
          +DV++VG+G  G++AA   A++G +T L+ 
Sbjct: 2  YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 7  KFDVIVVGAGIMGSSAAYQLAK----RGQKTLLLE 37
          + D++++G G  G  AAY+ A      G K  L+E
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 55

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 6  EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLE---QFDFLHHRGSSHGESRTIRATYPED 62
              + +VG+G    +AA   A+   K LL E     D       +          +PE 
Sbjct: 4  HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63

Query: 63 YYHPMVLESCLLWEQAQ 79
               + +     +Q++
Sbjct: 64 ILGVELTDKF--RKQSE 78

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 8  FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFL 42
           DVI+VGAG  G SAAY +AK     K  ++E     
Sbjct: 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 7/41 (17%), Positives = 20/41 (48%)

Query: 9  DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH 49
           ++++G+G  G +AA   A+   + +L+   +      ++ 
Sbjct: 7  KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	100.0
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	100.0
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.96
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.75
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.72
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.68
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.67
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.67
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.66
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.6
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.52
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.48
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.44
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.44
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.43
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.37
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.3
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.29
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.28
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.28
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.26
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.25
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.22
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.21
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.21
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.21
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.21
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.18
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.18
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.16
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.15
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.15
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.12
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.11
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.11
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.08
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.07
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.06
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.06
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.05
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.04
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.04
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.03
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.02
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.0
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.0
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.98
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.96
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.93
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.88
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.88
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.83
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.82
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.8
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.78
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.78
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.71
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.69
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.68
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.64
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.64
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.59
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.58
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.53
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.53
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	98.52
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.52
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.49
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.47
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.45
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.44
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.43
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.42
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.42
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.33
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.31
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.28
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.23
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.19
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.18
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.18
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.01
d2gf3a2	104	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.7
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.67
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.49
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.36
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.29
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.24
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.15
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.12
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.94
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.88
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.84
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.72
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.62
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.57
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.51
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.49
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.47
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.45
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.3
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.26
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.2
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.05
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.92
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.72
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.43
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.22
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.17
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.09
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.91
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.85
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	94.84
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.82
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.79
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.74
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.69
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.64
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.64
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.57
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.46
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.32
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.32
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.13
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.04
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.99
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.86
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.86
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.82
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.57
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.53
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.5
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.38
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.22
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.13
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.08
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.6
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.29
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	92.06
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.01
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	91.93
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.76
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.54
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.33
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.24
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.24
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.03
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	90.99
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.8
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.74
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	90.67
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.55
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.54
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.32
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.04
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.02
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	88.61
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	88.48
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	88.11
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.01
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.78
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	87.48
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.24
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.82
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.72
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.47
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.04
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.26
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	85.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.84
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.48
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	84.41
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.64
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.6
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.59
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	83.55
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.52
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.26
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.15
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	83.06
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.01
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.69
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	82.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	82.08
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	81.54
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.44
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.42
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	81.27
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.05
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	81.01
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	80.51
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	80.37
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	80.24
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.17

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=100.00  E-value=2.8e-35  Score=262.18  Aligned_cols=274  Identities=35%  Similarity=0.636  Sum_probs=227.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC-CCChHHHHHHHHHHHHHHHHHhCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP-EDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      .+|||+|||||++|+++|++|+++|++|+|||+...+++.+++.+..++++..+. ...+..+...+.+.|.++.++.+.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~   81 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH   81 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence            4799999999999999999999999999999998877666666666666665544 355678888999999999999988


Q ss_pred             eeEEeeceeeeCCC-ChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPS-ENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      +.+...+.+..... +...+.+..+..+..+.+.+.++.+++.+.+|. +..+....+++.+.+++++|..++..|.+.+
T Consensus        82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~-~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a  160 (281)
T d2gf3a1          82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG-ITVPENYNAIFEPNSGVLFSENCIRAYRELA  160 (281)
T ss_dssp             CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTT-CCCCTTEEEEEETTCEEEEHHHHHHHHHHHH
T ss_pred             ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhc-ccccccceeeecccccccccccccccccccc
Confidence            88777777665433 334456777778888999999999999999998 7767778899999999999999999999999


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEEEEEecCCC
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVCYWRIKEGN  243 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~~~~~~~~~  243 (413)
                      ++.|++++++++|++|..  +  ++.+.|+|++|+ ++||.||+|+|+|+..+++++ |+++|                 
T Consensus       161 ~~~Gv~i~~~~~V~~i~~--~--~~~v~V~t~~g~-i~a~~VViAaG~~s~~l~~~l-g~~~~-----------------  217 (281)
T d2gf3a1         161 EARGAKVLTHTRVEDFDI--S--PDSVKIETANGS-YTADKLIVSMGAWNSKLLSKL-NLDIP-----------------  217 (281)
T ss_dssp             HHTTCEEECSCCEEEEEE--C--SSCEEEEETTEE-EEEEEEEECCGGGHHHHGGGG-TEECC-----------------
T ss_pred             ccccccccCCcEEEEEEE--E--CCEEEEEECCcE-EEcCEEEECCCCcchhhHHhc-CCccc-----------------
Confidence            999999999999999998  7  567899999987 999999999999999998776 42110                 


Q ss_pred             CCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCeeec
Q 015088          244 EADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVDSNGPVATQ  323 (413)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  323 (413)
                                                                                                      
T Consensus       218 --------------------------------------------------------------------------------  217 (281)
T d2gf3a1         218 --------------------------------------------------------------------------------  217 (281)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCccccccccccccccC
Q 015088          324 LCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRFKEN  394 (413)
Q Consensus       324 ~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~~~~  394 (413)
                              +..+.++..|..  ++++++.|++|+|+.++|..|++++++++.+++ ..|+..|+++|+.-.
T Consensus       218 --------~~~~~~~~~P~~--~~~~~~~g~~g~g~~~~p~~G~~~~~~~~~~~~-~~d~~~f~~~R~~~~  277 (281)
T d2gf3a1         218 --------DEHFIIDLHPEH--SNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKT-EHDISIFSINRPALK  277 (281)
T ss_dssp             --------TSCCEEEEETTE--EEEEEEECCTTCCGGGHHHHHHHHHHHHHHSCC-SSCCGGGCTTCGGGT
T ss_pred             --------cccceeccccCC--CCEEEEeccCCcccccChhHHHHHHHHHhcCCC-CCCchhhCCCCccch
Confidence                    111223333444  678899999999999999999999999997777 678999999998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=100.00  E-value=2.3e-33  Score=249.06  Aligned_cols=268  Identities=23%  Similarity=0.349  Sum_probs=206.9

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccC---CCChHHHHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYP---EDYYHPMVLESCLLWEQAQS   80 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~   80 (413)
                      |+.++||+|||||++|+++|++|+++|++|+|||++...  .++|+.+.+.+.....   .....++...+.+.|+.+..
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~--~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~   78 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMG--GRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGE   78 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT--TTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHH
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC--CCcccccccccccccccccccccchhhhhhhhhcccccc
Confidence            346799999999999999999999999999999998765  3566666666655432   23345667777777766544


Q ss_pred             H----hCCee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHH
Q 015088           81 E----IGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKA  155 (413)
Q Consensus        81 ~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (413)
                      +    .++++ +...+.+.+... ......+ ... ......+.++.+++.+..|. +. +....+++.+.+++++|..+
T Consensus        79 ~~~~~~g~~~~~~~~g~l~l~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~p~-~~-~~~~g~~~~~~~g~i~~~~~  153 (276)
T d1ryia1          79 ELYALSGVDIRQHNGGMFKLAFS-EEDVLQL-RQM-DDLDSVSWYSKEEVLEKEPY-AS-GDIFGASFIQDDVHVEPYFV  153 (276)
T ss_dssp             HHHHHHCCCCCCBCCCEEEEESS-HHHHHHH-HTT-TTSTTEEEEEHHHHHHHCTT-SC-TTCCEEEEETTCCBCCHHHH
T ss_pred             ccccccccccccccccceeeeee-ccccccc-ccc-cccccccccccccccccCcc-cc-cceeEEEEeccceeeecccc
Confidence            3    34544 334455554332 2222111 111 11223577888999998886 43 45667889999999999999


Q ss_pred             HHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEEE
Q 015088          156 VSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTVC  235 (413)
Q Consensus       156 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~~  235 (413)
                      ++.|.+.++++|++|+++++|++|..  +  ++.+.|+|++|+ |.||.||+|+|+|+..+++++ |++           
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~--~~~~~V~t~~g~-i~a~~vV~AaG~~s~~l~~~~-G~~-----------  216 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVER--D--GEALFIKTPSGD-VWANHVVVASGVWSGMFFKQL-GLN-----------  216 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEEC--S--SSSEEEEETTEE-EEEEEEEECCGGGTHHHHHHT-TCC-----------
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEe--e--cceEEEecCCeE-EEcCEEEECCCccHHHHHhhc-CCC-----------
Confidence            99999999999999999999999988  6  578899998886 999999999999999998876 531           


Q ss_pred             EEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHHHhhcCCCCC
Q 015088          236 YWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWIQGRFAGRVD  315 (413)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~  315 (413)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (276)
T d1ryia1         217 --------------------------------------------------------------------------------  216 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCeeeceeeeeecCCCCeEecCCCCCCCCCEEEEeCCCCCCCccchHHHHHHHHHHhcCCCCcccccccccccc
Q 015088          316 SNGPVATQLCMYSITPDEDFVIDFLGGEFGEDVVVAGGFSGHGFKMAPAVGRILADLVLSGEAQGVELQHFRISRF  391 (413)
Q Consensus       316 ~~~~~~~~~g~~~~t~d~~p~ig~~~~~~~~~~~~~~G~~~~G~~~a~~~a~~la~~i~~g~~~~~~~~~~~~~R~  391 (413)
                                    +++..|+++.+|..  .+++.++|+.++|+.++|..|+++++++++++....++.+|+|+|.
T Consensus       217 --------------~~~~~p~~~~~p~~--~~~~~~~g~~~~gi~~~p~~g~~i~~~~~~~~~~~~~l~~f~~dr~  276 (276)
T d1ryia1         217 --------------NADGKPYIGRHPED--SRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAFRIDRK  276 (276)
T ss_dssp             --------------CCSSCCEEEEETTE--EEEEEEECCSSCTTTTHHHHHHHHHHHHTTCCCCHHHHHHTCSCCC
T ss_pred             --------------cccccceeccccCC--CCEEECCCCCCCeEEECccHHHHHHHHHhcCCCCcccccCCCCCCC
Confidence                          24667889888877  7899999999999999999999999999976665455899999983

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.96  E-value=3.2e-29  Score=225.37  Aligned_cols=219  Identities=18%  Similarity=0.237  Sum_probs=176.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      .||||||||++|+++|++|+++|. +|+||||+....+.++|..+.+.++..+.......+...+...|.++.+. +...
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~~~~gas~~~~G~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~   80 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTED-GVSC   80 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEET-TEES
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCccccccccceeccCCCCHHHHHHHHHHHHHHHhhhhc-cccc
Confidence            489999999999999999999996 79999998765445677778888887777777778888888888887543 3334


Q ss_pred             EEeeceeeeCCCC--hhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           87 YFKAHQFDMGPSE--NKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      +...+.+......  ........+..+..+.+.+.++.+++.+.++. ........+++.+.+++++|..++..+.+.++
T Consensus        81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~p~~l~~~l~~~a~  159 (305)
T d1pj5a2          81 FNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPL-LDGENILGGLHVPSDGLASAARAVQLLIKRTE  159 (305)
T ss_dssp             EECCCEEEEESSHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHCTT-SCGGGCCEEEEETTCEEECHHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHhhcccccccchHHhhhhccc-ccccccccceecccccccchhhhhhhHHhhhh
Confidence            5566666554332  23345566667778888999999999998886 33344567889999999999999999999999


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEE
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETT  233 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~  233 (413)
                      +.|++++++++|++|..  ++ +..+.|.|++|+ ++||+||+|+|+|+.++++++ |..+|+.+....
T Consensus       160 ~~gv~i~~~~~V~~i~~--~~-~~v~~V~T~~g~-i~a~~VV~aaG~~s~~l~~~~-g~~lP~~~~~~~  223 (305)
T d1pj5a2         160 SAGVTYRGSTTVTGIEQ--SG-GRVTGVQTADGV-IPADIVVSCAGFWGAKIGAMI-GMAVPPDGGPLL  223 (305)
T ss_dssp             HTTCEEECSCCEEEEEE--ET-TEEEEEEETTEE-EECSEEEECCGGGHHHHHHTT-TCCCCTTSCCEE
T ss_pred             cccccccCCceEEEEEE--eC-CEEEEEecccee-EECCEEEEecchhHHHHHHHc-CCcccccccccc
Confidence            99999999999999998  63 355678998886 999999999999999999887 888887765544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.75  E-value=7e-18  Score=147.22  Aligned_cols=183  Identities=13%  Similarity=-0.025  Sum_probs=103.3

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc-----CCCChHHHHHHHHHHHHHH
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY-----PEDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~   78 (413)
                      |+.+.+|+|||||++|+++|++|+++|++|+||||+...+  +++..+++.+....     ...............+..+
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED--VSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKW   80 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC--TTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCC--CcchhhhhhhcccccccccccchhhhhhhhhHHHHHHH
Confidence            5566799999999999999999999999999999987543  33333333332211     1222233333444444444


Q ss_pred             HHHhCCee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHH
Q 015088           79 QSEIGYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVS  157 (413)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (413)
                      .+...... ....+............   .............++...           ...........+..+++..++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~~d~~~~~~  146 (268)
T d1c0pa1          81 VELVPTGHAMWLKGTRRFAQNEDGLL---GHWYKDITPNYRPLPSSE-----------CPPGAIGVTYDTLSVHAPKYCQ  146 (268)
T ss_dssp             HHHTTTTSSEEEEEEEEEESSGGGGG---GGTTTTTSTTCEECCGGG-----------SSTTCEEEEEEEEECCHHHHHH
T ss_pred             HHHHhhhhhheeccEEEEEecchhhh---hHHHHhhccccccCchhh-----------cccccccccccceecCHHHHHH
Confidence            44433222 33333333322211110   000111111122222111           1111222334457889999999


Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhh
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKR  219 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~  219 (413)
                      .+.+.+++.|++|+. .+|++++.                ....++.||+|+|.|+..+...
T Consensus       147 ~l~~~~~~~Gv~i~~-~~v~~~~~----------------~~~~~~~vv~a~G~~a~~l~~~  191 (268)
T d1c0pa1         147 YLARELQKLGATFER-RTVTSLEQ----------------AFDGADLVVNATGLGAKSIAGI  191 (268)
T ss_dssp             HHHHHHHHTTCEEEE-CCCSBGGG----------------TCSSCSEEEECCGGGGGTSBTT
T ss_pred             HHHHHHHHCCCEEEE-eEecchHH----------------ccccceEEEECCchhhhhhhhh
Confidence            999999999999873 33333211                1246899999999998766554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.72  E-value=2.3e-17  Score=147.36  Aligned_cols=190  Identities=16%  Similarity=0.138  Sum_probs=107.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHH-HHHHHHHHHhC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESC-LLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~   83 (413)
                      +.++||||||||++|+++|++|+++|++|+||||....+|  +|....+.+................. ..+..+.....
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG--~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~   91 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG--NAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ   91 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--TGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC--cceecCCCCccccchhhhhhhccchHHHHHHHHHhhhh
Confidence            4579999999999999999999999999999999988754  33323333322211100000000001 11111111100


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      ...   ...+  ...-.......++++..+|+++.....      ..     .......+.+......+..+.+.+.+.+
T Consensus        92 ~~~---d~~l--v~~~~~~~~~~i~~L~~~Gv~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~a  155 (308)
T d1y0pa2          92 NIN---DPAL--VKVLSSHSKDSVDWMTAMGADLTDVGM------MG-----GASVNRAHRPTGGAGVGAHVVQVLYDNA  155 (308)
T ss_dssp             TCS---CHHH--HHHHHHHHHHHHHHHHHTTCCCCEEEC------CT-----TCSSCCEEESTTTCCHHHHHHHHHHHHH
T ss_pred             hcc---chHH--HHHHHHhhhHHHHHHHHcCCCcccccc------cc-----ccccccccccccccchHHHHHHHHHHHH
Confidence            000   0000  000001123445566667765432210      00     1112223344444455677888999999


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCCeEEEE--cCCCc--EEEcCEEEEcCCCChH
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKGGVTVV--TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~--~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ++.|++++++++|+++..  ++++....|.  ..++.  .|.|+.||+|||+++.
T Consensus       156 ~~~gv~i~~~~~v~~li~--~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         156 VKRNIDLRMNTRGIEVLK--DDKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             HHTTCEEESSEEEEEEEE--CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HhccceEEEeeccchhhh--hcccccccccccccccceeEeecCeEEEccCcccc
Confidence            999999999999999987  6444444443  33332  6899999999999874

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.69  E-value=2.2e-16  Score=136.53  Aligned_cols=166  Identities=21%  Similarity=0.177  Sum_probs=95.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      +|||+|||||++|++||+.|+++|++|+||||+...++.....+.....  .........+           ....... 
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~--~~~~~~~~~~-----------~~~~~~~-   67 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCN--VTNRLPLDEI-----------VKHIPGN-   67 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCC--CEECSCHHHH-----------HHTCTBT-
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCccee--cccccccchh-----------hcccccc-
Confidence            4999999999999999999999999999999998765322111111000  0000000000           0000000 


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                          ..+...............+....+++.....                 ....+ +  .......+.+.|.+.+++.
T Consensus        68 ----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~-~--~~~~~~~i~~~L~~~~~~~  123 (251)
T d2i0za1          68 ----GRFLYSAFSIFNNEDIITFFENLGVKLKEED-----------------HGRMF-P--VSNKAQSVVDALLTRLKDL  123 (251)
T ss_dssp             ----GGGGHHHHHHSCHHHHHHHHHHTTCCEEECG-----------------GGEEE-E--TTCCHHHHHHHHHHHHHHT
T ss_pred             ----hhhhhhhhhhhhhHHHHHHHHhcCCcccccc-----------------cccee-c--ccccHHHHHHHHHHHHHHc
Confidence                0000000000001223333344444321110                 00011 1  1112356788899999999


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      |++++++++|++|..  ++ +....|.+.+|++++||+||+|+|+.|
T Consensus       124 gv~i~~~~~v~~i~~--~~-~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         124 GVKIRTNTPVETIEY--EN-GQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             TCEEECSCCEEEEEE--ET-TEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             CCcccCCcEEEEEEE--EC-CEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            999999999999987  63 245567888898899999999999876

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.68  E-value=2.9e-16  Score=135.80  Aligned_cols=159  Identities=17%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCc-ccCCCceeecccCCCC-----hHHHHHHHHHHHHHH
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGS-SHGESRTIRATYPEDY-----YHPMVLESCLLWEQA   78 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~-s~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~   78 (413)
                      ++++||+|||||++|++||++|+++|++|+||||...++.... +.+....+.+......     .........      
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l------   75 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSAL------   75 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHH------
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHh------
Confidence            4679999999999999999999999999999999987642111 1110001111100000     000000000      


Q ss_pred             HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHH
Q 015088           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSM  158 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (413)
                       ..                   .......+++...+.....-                 .....+...    ....+.+.
T Consensus        76 -~~-------------------~~~~~~~~~~~~~g~~~~~~-----------------~~~~~~~~~----~a~~i~~~  114 (253)
T d2gqfa1          76 -AR-------------------YTNWDFISLVAEQGITYHEK-----------------ELGQLFCDE----GAEQIVEM  114 (253)
T ss_dssp             -HH-------------------SCHHHHHHHHHHTTCCEEEC-----------------STTEEEETT----CTHHHHHH
T ss_pred             -hh-------------------hcccchhhhhhhcCcceeee-----------------cCCcccccc----chhHHHHH
Confidence             00                   00122333334444332110                 001111111    23568888


Q ss_pred             HHHHHHHCCCEEEcCceEEEEEEecccCCC--eEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          159 FQTLAIKNGAVLRDNMEVKTVLKVKDAVKG--GVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       159 l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      |.+.+++.|++|+++++|+++..  .+++.  .+.+.+ ++++++||+||+|+|+.+
T Consensus       115 L~~~~~~~gV~i~~~~~V~~i~~--~~~~~~v~~~~~~-~~~~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         115 LKSECDKYGAKILLRSEVSQVER--IQNDEKVRFVLQV-NSTQWQCKNLIVATGGLS  168 (253)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEE--CCSCSSCCEEEEE-TTEEEEESEEEECCCCSS
T ss_pred             HHHHHHHcCCCeecCceEEEEEe--ecCCceeEEEEec-CCEEEEeCEEEEcCCccc
Confidence            99999999999999999999987  53332  233444 555699999999999865

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=2.8e-18  Score=148.03  Aligned_cols=192  Identities=12%  Similarity=0.079  Sum_probs=108.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC----CCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh--
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF----LHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI--   82 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~----~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--   82 (413)
                      +|+|||||++|+++|++|+++|++|+++|+...    ..+..++....+.+.+.............+...+..+....  
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHIGS   81 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCTTSSSGGGSCCBCCCCSSCCSSTHHHHHHHHHHHHHHTTTTS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCCCCChhHhhhceecccccccccHHHHHHHHHHHHHhhhhhcc
Confidence            599999999999999999999998777766322    11233444445555444433333344444444444433321  


Q ss_pred             --CCee-EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHH
Q 015088           83 --GYKV-YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMF  159 (413)
Q Consensus        83 --~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  159 (413)
                        .... +...+.+.........     ..........+.+.....    +    ..+.....+.+.++++||..++.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~----~----~~~~~~~~~~~~~~~id~~~~~~~L  148 (246)
T d1kifa1          82 PNAANMGLTPVSGYNLFREAVPD-----PYWKDMVLGFRKLTPREL----D----MFPDYRYGWFNTSLILEGRKYLQWL  148 (246)
T ss_dssp             TTTTTTTEEEEEEEEEESSCCCC-----CTTTTTSEEEEECCHHHH----T----TSTTCCEEEEEEEEEECHHHHHHHH
T ss_pred             ccCCceeEEEcccEEEecCchhh-----hhHHhhccchhhhccccc----c----CCcccceEEEccceEEcHHHHHHHH
Confidence              1111 2233333332211100     000111111223332211    1    1234456677888999999999999


Q ss_pred             HHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCCccceeEEEEEE
Q 015088          160 QTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGLELPIQAVETTV  234 (413)
Q Consensus       160 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~~~~~~~~~g~~  234 (413)
                      .+.++++|++|+.+ +|+++..  .            + ...+|.||+|+|.|+..+.+..     ++.+.+++.
T Consensus       149 ~~~~~~~G~~~~~~-~v~~l~~--~------------~-~~~~d~vVnctG~~a~~l~~d~-----~~~~~r~~~  202 (246)
T d1kifa1         149 TERLTERGVKFFLR-KVESFEE--V------------A-RGGADVIINCTGVWAGVLQPDP-----LQVRLEREQ  202 (246)
T ss_dssp             HHHHHHTTCEEEEC-CCCCHHH--H------------H-HTTCSEEEECCGGGHHHHSCCT-----TSCEEEEEE
T ss_pred             HHHHHHCCCEEEEe-EeCCHHH--h------------c-cCCCCEEEECCcccccccCCCC-----CeeccceEE
Confidence            99999999998854 4655432  1            0 1347899999999998765432     444555543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.66  E-value=4.5e-16  Score=139.61  Aligned_cols=190  Identities=17%  Similarity=0.136  Sum_probs=106.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHH-HHHHHHHHHHhC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLES-CLLWEQAQSEIG   83 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~   83 (413)
                      +..+||||||+|++|+++|+.|+++|++|+||||....++.  +....+.+...............+ ...++.+.....
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~--s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~   98 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN--TKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGR   98 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTT--GGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc--ccccCCcccccCchhhhhcccCCCHHHHHHHHHhccc
Confidence            34689999999999999999999999999999999887543  222222222111000000000000 111111111110


Q ss_pred             CeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHH
Q 015088           84 YKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLA  163 (413)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  163 (413)
                      .....  .   ....-.+.....++++..+|+++.....      ++.     ......+.+..+......+.+.|.+.+
T Consensus        99 ~~~d~--~---~~~~~~~~~~~~i~~l~~~Gv~~~~~~~------~~g-----~~~~~~~~~~~~~~~~~~~~~~l~~~a  162 (322)
T d1d4ca2          99 NINDP--E---LVKVLANNSSDSIDWLTSMGADMTDVGR------MGG-----ASVNRSHRPTGGAGVGAHVAQVLWDNA  162 (322)
T ss_dssp             TCSCH--H---HHHHHHHTHHHHHHHHHHTTCCCCEEEC------CTT-----CSSCCEEESTTTCCSHHHHHHHHHHHH
T ss_pred             cccCH--H---Hhhhhhhhhhhhhhhhhhhccccccccc------ccc-----cccccccccccccchhHHHHHHHHHHH
Confidence            00000  0   0000001123445566667766432210      111     111123334444555678889999999


Q ss_pred             HHCCCEEEcCceEEEEEEecccCCC--eEEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          164 IKNGAVLRDNMEVKTVLKVKDAVKG--GVTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       164 ~~~Gv~i~~~~~V~~i~~~~~~~~~--~~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      .+.|++|+++++|+++..  ++++.  ++.+...++.  .|.|+.||+|||+++.
T Consensus       163 ~~~gv~i~~~t~v~~li~--d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         163 VKRGTDIRLNSRVVRILE--DASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             HHTTCEEETTEEEEEEEC--CSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             HhcCceEEEeeecccccc--cccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            999999999999999987  54333  3444443333  6899999999999874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.63  E-value=2.3e-15  Score=134.56  Aligned_cols=189  Identities=17%  Similarity=0.116  Sum_probs=106.5

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHH-HHHH-HHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPM-VLES-CLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~   82 (413)
                      ..++||||||+|++|++||++|+++|.+|+||||....++  +|..+.+.+....... .... ...+ ...+..+....
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG--~S~~a~Ggi~a~~~~~-~~~~g~~d~~~~~~~d~~~~~   93 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG--NSMISAGGMNAVGTKQ-QTAHGVEDKVEWFIEDAMKGG   93 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCT--TGGGCCSCEECSSCHH-HHHTTCCCCHHHHHHHHHHHT
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC--chhhcCCCcccccchh-hhhcccCCcHHHHHHHHHHhh
Confidence            4579999999999999999999999999999999988754  3332333332211100 0000 0000 11111111111


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTL  162 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (413)
                      ......     .+...-.+...+.++++..+++++.....      ...     ......+.+..+......+...|.+.
T Consensus        94 ~~~~d~-----~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~------~gg-----~~~~r~~~~~~g~~~g~~i~~~L~~~  157 (317)
T d1qo8a2          94 RQQNDI-----KLVTILAEQSADGVQWLESLGANLDDLKR------SGG-----ARVDRTHRPHGGKSSGPEIIDTLRKA  157 (317)
T ss_dssp             TTCSCH-----HHHHHHHHHHHHHHHHHHHTTCCCCEEEC------CTT-----CSSCCEEECSSSSCHHHHHHHHHHHH
T ss_pred             ccccch-----hHHHHHHhhhhhhhhhHHHhhhccccccc------ccC-----cccccccccccccccchhhhHHHHHH
Confidence            000000     00000001112345566666665432110      011     11112233444445566789999999


Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeE--EEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGV--TVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~--~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +++.|++++++++|+++..  ++++...  .+...+++  .+.|+.||+|||+|..
T Consensus       158 ~~~~g~~i~~~~~v~~l~~--~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         158 AKEQGIDTRLNSRVVKLVV--NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHTTCCEECSEEEEEEEE--CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             hhhccceeeeccchhheee--cccccceeeEeecccceEEEEeccceEEecccccc
Confidence            9999999999999999877  5444443  44445554  5789999999999874

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=1.6e-15  Score=132.07  Aligned_cols=45  Identities=29%  Similarity=0.417  Sum_probs=41.4

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      |+..|||||||||++|++||++|+++|++|+|||+++..||..++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t   46 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS   46 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEE
Confidence            567899999999999999999999999999999999999877654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.52  E-value=9.7e-14  Score=124.96  Aligned_cols=60  Identities=13%  Similarity=0.208  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeE--EEE-cCCCc--EEEcCEEEEcCCCChH
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGV--TVV-TSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~--~v~-~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +..+...|.+.+++.|++|+.+++++++..  +++ ..+  .+. ..+|+  ++.|+.||+|||++..
T Consensus       157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~--~~~-~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         157 GHTMLFAVANECLKLGVSIQDRKEAIALIH--QDG-KCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCEEECSEEEEEEEE--ETT-EEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHHHhccccccceeeeeeccc--ccc-cccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            467888899999999999999999999987  633 222  232 45665  6889999999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.48  E-value=2.9e-13  Score=118.76  Aligned_cols=146  Identities=20%  Similarity=0.248  Sum_probs=95.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      ...+||||||||++|+++|.+|.++|++|+|+|+++..||.   +..     ..++                      +.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGt---W~~-----n~yp----------------------g~   54 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV---WYW-----NRYP----------------------GA   54 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTH---HHH-----CCCT----------------------TC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccc---ccc-----CCCC----------------------Cc
Confidence            35789999999999999999999999999999999877542   100     0000                      00


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                      .+........  .                     .... ......+.    .          ........+.+.|...++
T Consensus        55 ~~d~~~~~~~--~---------------------s~~~-~~~~~~~~----~----------~~~p~~~e~~~Yl~~~a~   96 (298)
T d1w4xa1          55 RCDIESIEYC--Y---------------------SFSE-EVLQEWNW----T----------ERYASQPEILRYINFVAD   96 (298)
T ss_dssp             BCSSCTTTSS--C---------------------CSCH-HHHHHCCC----C----------BSSCBHHHHHHHHHHHHH
T ss_pred             eecccccccc--c---------------------cccc-cccCCCCC----c----------cccCccchHHHHHHHHHH
Confidence            0000000000  0                     0000 00000000    0          011123567778888888


Q ss_pred             HCCC--EEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhh
Q 015088          165 KNGA--VLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRI  220 (413)
Q Consensus       165 ~~Gv--~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~  220 (413)
                      +.++  .|+++++|+++..  +++.+.|.|++.++.++++|.||+|+|..+....+..
T Consensus        97 ~~~L~~~I~f~t~V~~~~~--de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~  152 (298)
T d1w4xa1          97 KFDLRSGITFHTTVTAAAF--DEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL  152 (298)
T ss_dssp             HTTGGGGEECSCCEEEEEE--ETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHH
T ss_pred             HcCCcccccCCcEEEEEEE--ecCCCceeeccccccccccceEEEeecccccccCCcc
Confidence            8887  6999999999987  5446789999999988999999999999887666655

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.2e-13  Score=119.77  Aligned_cols=187  Identities=14%  Similarity=0.059  Sum_probs=94.0

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHh
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEI   82 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   82 (413)
                      ..++||+|||+|+||++||++++++  |.+|+||||....++ ++....+++.............       +......-
T Consensus         3 ~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g-~s~~A~GGi~a~~~~~Ds~e~~-------~~dt~~~g   74 (311)
T d1kf6a2           3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS-HTVAAEGGSAAVAQDHDSFEYH-------FHDTVAGG   74 (311)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS-GGGGCCSCEECCCSTTCCHHHH-------HHHHHHHT
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCC-cHHHHhhhHhhhcCCCCCHHHH-------HHHHHhhc
Confidence            4579999999999999999999987  679999999876542 2222233332222111111111       11111110


Q ss_pred             CCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHH-HHHcCCcccCCCCeEEEEecCCceeChHHHHH-HHH
Q 015088           83 GYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQV-LEKYSGRIEIPENWVGVATELGGVIKPTKAVS-MFQ  160 (413)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  160 (413)
                      .....   ..+  ...-.........++..++.++........ ...++.    .. ....+...  ......+.. .+.
T Consensus        75 ~~~~d---~~~--v~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~----~~-~~r~~~~~--~~~g~~~~~~~l~  142 (311)
T d1kf6a2          75 DWLCE---QDV--VDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGG----MK-IERTWFAA--DKTGFHMLHTLFQ  142 (311)
T ss_dssp             TTCSC---HHH--HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTT----CS-SCCEECST--TCHHHHHHHHHHH
T ss_pred             cCccH---HHH--HHHHHHhhhHhHHhhhhcccccccccccccccccccc----cc-cccccccc--cchhhHHHHhHHH
Confidence            00000   000  000001112344555666665432221100 000000    00 00111111  111233444 444


Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeE---EEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGV---TVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~---~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      +..+..+++++.+++|++|..  +++ ...   .+...+|+  .+.|+.||+|||++..
T Consensus       143 ~~~~~~~v~i~~~~~v~~Ll~--d~g-~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         143 TSLQFPQIQRFDEHFVLDILV--DDG-HVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HHTTCTTEEEEETEEEEEEEE--ETT-EEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             HHHccCcceeEeeeEeeeeEe--cCC-cceeEEEEEcCCCcEEEEECCEEEEcCCCccc
Confidence            444445899999999999988  643 332   23356776  5689999999999864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-13  Score=125.17  Aligned_cols=41  Identities=39%  Similarity=0.494  Sum_probs=38.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      ||||||||++|++||++|+++|++|+|||+++.+||+..+.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~   41 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTL   41 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEE
Confidence            89999999999999999999999999999999998876654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.1e-12  Score=117.49  Aligned_cols=198  Identities=17%  Similarity=0.186  Sum_probs=106.1

Q ss_pred             CCCCCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeeccc-C-CCChHHHHHHHHHHHHHH
Q 015088            1 MEFPGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATY-P-EDYYHPMVLESCLLWEQA   78 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~   78 (413)
                      |+.+.+++||+|||+|+||++||++++++|.+|+||||....++. +....+++..... . ...........+..    
T Consensus         1 ~~~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~-s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~a----   75 (330)
T d1neka2           1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH-TVSAQGGITVALGNTHEDNWEWHMYDTVKG----   75 (330)
T ss_dssp             CCCCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG-GGGCCSCEECCCCSSSCCCHHHHHHHHHHH----
T ss_pred             CCCCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc-HHHHhhhHheEcCCCCCCCHHHHHHHHHHh----
Confidence            666667899999999999999999999999999999998776432 2222233321111 1 11111111111110    


Q ss_pred             HHHhCCeeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHH-cCCc-ccCCCCeEEEEecCCceeChHHHH
Q 015088           79 QSEIGYKVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEK-YSGR-IEIPENWVGVATELGGVIKPTKAV  156 (413)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  156 (413)
                        -.+..   ....+   ..-.+.-...++++..+++++........... .... ........ ......+......+.
T Consensus        76 --G~~l~---d~~~v---~~l~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~g~~s~~~~~~~~-~~~~~~~d~~G~~i~  146 (330)
T d1neka2          76 --SDYIG---DQDAI---EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQA-ARTAAAADRTGHALL  146 (330)
T ss_dssp             --HTSCS---CHHHH---HHHHHHHHHHHHHHHHTTCCCCBCSCBTTBCCCSSBCEEECTTSSS-EEEECCTTCHHHHHH
T ss_pred             --hhhcc---CHHHH---HHHHHHhHHHHHHHhhccccccccCCCceehhccCcccccccCccc-ccccccCCccHHHHH
Confidence              00000   00000   00001113455666777776533221110000 0000 00000000 000111222235678


Q ss_pred             HHHHHHHHHCCCEEEcCceEEEEEEecccCCCe---EEEEcCCCc--EEEcCEEEEcCCCChH
Q 015088          157 SMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGG---VTVVTSNGE--KFWGKKCVVTAGAWVG  214 (413)
Q Consensus       157 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~---~~v~~~~g~--~i~ad~VV~A~G~~s~  214 (413)
                      ..|.+.+++.+++++.++.+.++..  .+++..   +.+...+|+  .+.|+.||+|+|++..
T Consensus       147 ~~L~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         147 HTLYQQNLKNHTTIFSEWYALDLVK--NQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHHHTTCEEECSEEEEEEEE--CTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGG
T ss_pred             HHHHHHHHhcCCeEEEEEEEEEeee--eccccceeeeeEEccCCcEEEEeccEEEEcCCCccc
Confidence            8888999999999999999999876  533332   334456676  6789999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.43  E-value=8.6e-14  Score=124.11  Aligned_cols=43  Identities=37%  Similarity=0.509  Sum_probs=39.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      +||+|||||++|+++|++|+++|++|+|+|+++..||+..+..
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~   43 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA   43 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe
Confidence            3799999999999999999999999999999999988766543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=5.9e-12  Score=93.76  Aligned_cols=95  Identities=25%  Similarity=0.275  Sum_probs=78.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCeeE
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKVY   87 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (413)
                      .+++|||||++|+.+|..|++.|.+|+|+|+.+....                                           
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~-------------------------------------------   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-------------------------------------------   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-------------------------------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh-------------------------------------------
Confidence            5799999999999999999999999999999765310                                           


Q ss_pred             EeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHCC
Q 015088           88 FKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKNG  167 (413)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  167 (413)
                                                                 . +                 + ..+.+.+.+.++++|
T Consensus        59 -------------------------------------------~-~-----------------d-~~~~~~~~~~l~~~G   76 (116)
T d1gesa2          59 -------------------------------------------S-F-----------------D-PMISETLVEVMNAEG   76 (116)
T ss_dssp             -------------------------------------------T-S-----------------C-HHHHHHHHHHHHHHS
T ss_pred             -------------------------------------------h-c-----------------c-hhhHHHHHHHHHHCC
Confidence                                                       0 0                 0 234556677788889


Q ss_pred             CEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCC
Q 015088          168 AVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       168 v~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      ++++++++|+++..  ++ ++.+.+.+++|+++++|.||+|+|
T Consensus        77 V~~~~~~~v~~i~~--~~-~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          77 PQLHTNAIPKAVVK--NT-DGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             CEEECSCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             CEEEeCCEEEEEEE--cC-CcEEEEEECCCCEEEcCEEEEecC
Confidence            99999999999987  53 356788899999999999999998

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.30  E-value=4.3e-12  Score=114.41  Aligned_cols=44  Identities=36%  Similarity=0.452  Sum_probs=39.7

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +..+|+|||||++|++||++|+++|++|+|+|+++.+||+..+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~   72 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY   72 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEE
Confidence            45689999999999999999999999999999999998876553

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.29  E-value=4.2e-11  Score=91.28  Aligned_cols=98  Identities=17%  Similarity=0.259  Sum_probs=78.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.....                                         
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----------------------------------------   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----------------------------------------   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----------------------------------------
Confidence            468999999999999999999999999999997654100                                         


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                      .                               .+..+.+.+.+.++++
T Consensus        74 --------------------------------~-------------------------------~~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          74 --------------------------------V-------------------------------TAPPVSAFYEHLHREA   90 (133)
T ss_dssp             --------------------------------T-------------------------------SCHHHHHHHHHHHHHH
T ss_pred             --------------------------------c-------------------------------cchhhhhhhhhccccc
Confidence                                            0                               0023445566677888


Q ss_pred             CCEEEcCceEEEEEEecccCC-CeEEEEcCCCcEEEcCEEEEcCC
Q 015088          167 GAVLRDNMEVKTVLKVKDAVK-GGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~-~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      |++++++++|++++.  .+++ ....+.+++|+++++|.||+|+|
T Consensus        91 GV~i~~~~~v~~i~~--~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEM--STDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             TCEEECSCCEEEEEE--CTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccEEEeCCeEEEEEE--eCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999999987  5333 44568899999999999999998

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.2e-11  Score=107.57  Aligned_cols=40  Identities=28%  Similarity=0.472  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      .+.++||||||+|++|++||+.+++.| +|+||||....++
T Consensus         4 p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG   43 (305)
T d1chua2           4 PEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG   43 (305)
T ss_dssp             CSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred             CcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence            345799999999999999999999888 9999999987653

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.28  E-value=1.8e-11  Score=105.75  Aligned_cols=46  Identities=13%  Similarity=-0.004  Sum_probs=40.9

Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChH
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVG  214 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~  214 (413)
                      ..++.++++++|+++..  .  .+.+.+++.+|+++++|.+|.|.|.++.
T Consensus       108 ~~~~~~~~~~~v~~~~~--~--~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQ--D--SETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             HCSTTEETTCCEEEEEE--C--SSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             cccceeecCcEEEEEEe--e--CCceEEEECCCCEEEEEEEecccccccc
Confidence            35789999999999988  6  5788999999999999999999998875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.26  E-value=8.2e-11  Score=87.77  Aligned_cols=96  Identities=22%  Similarity=0.224  Sum_probs=75.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ...+++|||||+.|+-.|..|++.|.+|+|+|+.+..-.                                         
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~-----------------------------------------   59 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-----------------------------------------   59 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----------------------------------------
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC-----------------------------------------
Confidence            346799999999999999999999999999999765410                                         


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                                                   . +                 + ..+.+.+.+.+++
T Consensus        60 ---------------------------------------------~-~-----------------d-~ei~~~l~~~l~~   75 (119)
T d3lada2          60 ---------------------------------------------A-V-----------------D-EQVAKEAQKILTK   75 (119)
T ss_dssp             ---------------------------------------------T-S-----------------C-HHHHHHHHHHHHH
T ss_pred             ---------------------------------------------c-c-----------------c-chhHHHHHHHHHh
Confidence                                                         0 0                 0 2456667778888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCC--C-cEEEcCEEEEcCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSN--G-EKFWGKKCVVTAG  210 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~--g-~~i~ad~VV~A~G  210 (413)
                      +|++++++++|++++.  +  ++.+.++..+  + +++.+|.|++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~--~--~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEV--K--NKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEE--C--SSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEE--e--CCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            9999999999999998  6  3455555433  3 3799999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.25  E-value=6.5e-11  Score=88.43  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=73.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||++|+-+|..|+++|.+|+|+|+.+..-..                                         
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-----------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-----------------------------------------
Confidence            358999999999999999999999999999997654100                                         


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                      .                               .+..+.+.+.+.++++
T Consensus        69 --------------------------------~-------------------------------~~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          69 --------------------------------A-------------------------------APATLADFVARYHAAQ   85 (121)
T ss_dssp             --------------------------------T-------------------------------SCHHHHHHHHHHHHTT
T ss_pred             --------------------------------c-------------------------------CCHHHHHHHHHHHHHC
Confidence                                            0                               0024455667778889


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCC
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      |++++++++|+++..  .      .+.+++|+++.+|.||+|+|
T Consensus        86 GV~i~~~~~v~~~~~--~------~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          86 GVDLRFERSVTGSVD--G------VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TCEEEESCCEEEEET--T------EEEETTSCEEECSEEEECSC
T ss_pred             CcEEEeCCEEEEEeC--C------EEEECCCCEEECCEEEEeeC
Confidence            999999999988754  2      35678888999999999998

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.22  E-value=5e-11  Score=106.76  Aligned_cols=61  Identities=11%  Similarity=0.000  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCC---c---EEEcCEEEEcCCCChHHh
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG---E---KFWGKKCVVTAGAWVGKL  216 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g---~---~i~ad~VV~A~G~~s~~l  216 (413)
                      -..+.+.|...++..+..|+++++|++|+.  +  ++.|.|++.++   +   ...+|.||+|+|.++...
T Consensus       112 ~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~--~--~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p~  178 (335)
T d2gv8a1         112 RHTIQEYQRIYAQPLLPFIKLATDVLDIEK--K--DGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPY  178 (335)
T ss_dssp             HHHHHHHHHHHHGGGGGGEECSEEEEEEEE--E--TTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBC
T ss_pred             hHHHHHHHHHHHHHhhhcccCceEEEEEEe--c--CCEEEEEEEecCCCCeEEEEEeeEEEEcccccccce
Confidence            356667777777777889999999999998  7  46777765432   2   456999999999987443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.21  E-value=1.8e-10  Score=85.79  Aligned_cols=54  Identities=20%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCC
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      .+.+.+.+.++++|+++++++.|++|..  .+ ++...+.+++|+++.+|.||+|+|
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~--~~-~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTK--NA-DGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEE--CC-CCEEEEEECCCCEEEcCEEEEecC
Confidence            3556677788899999999999999987  53 356678889999999999999998

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=1e-10  Score=96.46  Aligned_cols=34  Identities=38%  Similarity=0.634  Sum_probs=32.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|||||||||.||+.||+++++.|.+|+||+++.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5999999999999999999999999999999863

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.21  E-value=6.6e-11  Score=87.85  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=32.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            468999999999999999999999999999997654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.9e-11  Score=90.68  Aligned_cols=53  Identities=17%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCC
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G  210 (413)
                      .+.+.+.+.++++|+++++++.|.++..  +  ++.+.+++++|+++.||.||+|+|
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~--~--~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGV--S--SGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEE--E--TTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEe--c--CCEEEEEECCCCEEECCEEEEeec
Confidence            3455667778889999999999999988  6  568889999999999999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.18  E-value=2.6e-10  Score=84.49  Aligned_cols=95  Identities=12%  Similarity=0.176  Sum_probs=76.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+..- .                                         
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-~-----------------------------------------   59 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-R-----------------------------------------   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-T-----------------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcccc-c-----------------------------------------
Confidence            4579999999999999999999999999999976541 0                                         


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                                  . +                  ...+.+.+.+.++++
T Consensus        60 --------------------------------------------~-~------------------d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          60 --------------------------------------------K-F------------------DESVINVLENDMKKN   76 (117)
T ss_dssp             --------------------------------------------T-S------------------CHHHHHHHHHHHHHT
T ss_pred             --------------------------------------------c-c------------------cHHHHHHHHHHHHhC
Confidence                                                        0 0                  034566677788889


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEE-cCEEEEcC
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFW-GKKCVVTA  209 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~-ad~VV~A~  209 (413)
                      |++++++++|++++.  .+ ++.+.+++++|++++ +|.||+|.
T Consensus        77 gV~i~~~~~v~~i~~--~~-~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          77 NINIVTFADVVEIKK--VS-DKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TCEEECSCCEEEEEE--SS-TTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCEEEECCEEEEEEE--cC-CCeEEEEECCCCEEEeCCEEEEeC
Confidence            999999999999987  53 357889999998775 69999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=3.7e-10  Score=84.49  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=74.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ...++|||||+.|+-+|..|++.|.+|+|+|+++..-.                                          
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~------------------------------------------   60 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------------------------------------------   60 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------------------------------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch------------------------------------------
Confidence            46899999999999999999999999999999765410                                          


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                                  . +                 + ..+.+.+.+.++++
T Consensus        61 --------------------------------------------~-~-----------------d-~ei~~~l~~~l~~~   77 (122)
T d1v59a2          61 --------------------------------------------S-M-----------------D-GEVAKATQKFLKKQ   77 (122)
T ss_dssp             --------------------------------------------S-S-----------------C-HHHHHHHHHHHHHT
T ss_pred             --------------------------------------------h-h-----------------h-hhhHHHHHHHHHhc
Confidence                                                        0 0                 0 24556677788889


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcCCC-----cEEEcCEEEEc
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTSNG-----EKFWGKKCVVT  208 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g-----~~i~ad~VV~A  208 (413)
                      |++++++++|++++.  .+++..+.+...++     +++++|.|++|
T Consensus        78 GV~i~~~~~v~~v~~--~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          78 GLDFKLSTKVISAKR--NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TCEEECSEEEEEEEE--ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             cceEEeCCEEEEEEE--eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            999999999999988  64445566654332     37999999986

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.16  E-value=1e-10  Score=105.71  Aligned_cols=39  Identities=31%  Similarity=0.518  Sum_probs=34.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHH----cCCcEEEEcccCCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAK----RGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~----~g~~V~liE~~~~~gg~   45 (413)
                      .+||+|||+|++|++||++|++    +|++|+||||....++.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            5899999999999999999986    69999999998877543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.15  E-value=1e-10  Score=102.58  Aligned_cols=60  Identities=12%  Similarity=-0.072  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-cCCCc--EEEcCEEEEcCCCCh
Q 015088          151 KPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       151 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~VV~A~G~~s  213 (413)
                      ....+.+.|.+.+++.+..+.++..++....  .++ ..+.|. ..+|+  +++||+||.|+|.+|
T Consensus       101 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         101 GQTEVTRDLMEAREACGATTVYQAAEVRLHD--LQG-ERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEEC--TTS-SSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEcceeeeeee--ecc-CceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence            3467788888888888888888877776655  433 334443 34554  578999999999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.15  E-value=2.6e-10  Score=85.49  Aligned_cols=98  Identities=19%  Similarity=0.141  Sum_probs=74.8

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCe
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYK   85 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (413)
                      ...+++|||||+.|+-+|..+++.|.+|+|+|+.+..-.                                         
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-----------------------------------------   63 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-----------------------------------------   63 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----------------------------------------
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-----------------------------------------
Confidence            346899999999999999999999999999999764410                                         


Q ss_pred             eEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHH
Q 015088           86 VYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIK  165 (413)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  165 (413)
                                                       .++                               ..+.+.+.+.+++
T Consensus        64 ---------------------------------~~d-------------------------------~~~~~~l~~~l~~   79 (125)
T d1ojta2          64 ---------------------------------GAD-------------------------------RDLVKVWQKQNEY   79 (125)
T ss_dssp             ---------------------------------TSC-------------------------------HHHHHHHHHHHGG
T ss_pred             ---------------------------------cch-------------------------------hhHHHHHHHHHHH
Confidence                                             000                               2455667777888


Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCc--EEEcCEEEEcCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE--KFWGKKCVVTAG  210 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~--~i~ad~VV~A~G  210 (413)
                      +|++++++++|++++.  ++++..+.+...+|+  ++++|.|++|+|
T Consensus        80 ~gv~~~~~~~v~~v~~--~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          80 RFDNIMVNTKTVAVEP--KEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             GEEEEECSCEEEEEEE--ETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             cCcccccCcEEEEEEE--cCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            9999999999999988  632223344444443  699999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.12  E-value=1e-09  Score=81.46  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcC
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTA  209 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~  209 (413)
                      .+.+.+.+.++++|++++++++|++++.  .+ ++.+.+.+++|++++||.||+|.
T Consensus        65 ~~~~~l~~~l~~~GV~v~~~~~v~~ie~--~~-~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          65 TLREELTKQLTANGIQILTKENPAKVEL--NA-DGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEE--CT-TSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHhcCcEEEcCCEEEEEEE--cC-CCeEEEEECCCcEEEeCEEEEeC
Confidence            4556677888899999999999999987  52 35677899999999999999983

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.11  E-value=3.4e-10  Score=102.73  Aligned_cols=35  Identities=31%  Similarity=0.538  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      -.++||||||+|.+|+.+|++|+++|++|+|||++
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35799999999999999999999999999999986

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.11  E-value=6.4e-10  Score=82.72  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||||++|+-+|..|++.|.+|+|+|+.+..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            468999999999999999999999999999997654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.08  E-value=9.7e-10  Score=82.32  Aligned_cols=96  Identities=21%  Similarity=0.215  Sum_probs=73.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ..+++|||||+.|+-.|..|++.|.+|+|+|+++..-.                                          
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------------------------------------------   62 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------------------------------------------   62 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------------------------------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------------------------------------------
Confidence            45799999999999999999999999999999765410                                          


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                      .+                              + ..+...+.+.+++.
T Consensus        63 --------------------------------~~------------------------------d-~~~~~~l~~~l~~~   79 (123)
T d1dxla2          63 --------------------------------TM------------------------------D-AEIRKQFQRSLEKQ   79 (123)
T ss_dssp             --------------------------------TS------------------------------C-HHHHHHHHHHHHHS
T ss_pred             --------------------------------hh------------------------------h-hcchhhhhhhhhcc
Confidence                                            00                              0 24556677888889


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEEEcC-CCc--EEEcCEEEEcC
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTVVTS-NGE--KFWGKKCVVTA  209 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~-~g~--~i~ad~VV~A~  209 (413)
                      |++++++++|.+++.  .+++..+.+... +|+  ++++|.|++|+
T Consensus        80 GI~i~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          80 GMKFKLKTKVVGVDT--SGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             SCCEECSEEEEEEEC--SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             cceEEcCCceEEEEE--ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            999999999999988  633334455543 333  68999999986

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.07  E-value=5.6e-10  Score=93.41  Aligned_cols=40  Identities=33%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      .+|||+|||||++|+++|.++++.|++|+|||++...||.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~   41 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT   41 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCe
Confidence            4699999999999999999999999999999998877653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=7.1e-10  Score=83.08  Aligned_cols=51  Identities=12%  Similarity=0.070  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcC
Q 015088          154 KAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTA  209 (413)
Q Consensus       154 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~  209 (413)
                      .+.+.+.+.++++|++++++++|+++..  +  +....+ ..+|++++||.||+|.
T Consensus        73 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~--~--~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          73 EFTDVLTEEMEANNITIATGETVERYEG--D--GRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEEC--S--SBCCEE-EESSCEEECSEEEECS
T ss_pred             hhHHHHHHHhhcCCeEEEeCceEEEEEc--C--CCEEEE-EeCCCEEECCEEEEEC
Confidence            3456667778889999999999999977  5  333334 4567779999999983

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.06  E-value=2.1e-09  Score=80.45  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=73.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCCee
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGYKV   86 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (413)
                      ...|+|||||..|+-.|..|++.|.+|+++++.+... .  .                                      
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l-~--~--------------------------------------   60 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-L--I--------------------------------------   60 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-T--C--------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh-c--c--------------------------------------
Confidence            3589999999999999999999999999999976431 0  0                                      


Q ss_pred             EEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHHHC
Q 015088           87 YFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAIKN  166 (413)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  166 (413)
                                                                    +                 + ..+.+.+.+.++++
T Consensus        61 ----------------------------------------------~-----------------d-~~~~~~~~~~l~~~   76 (121)
T d1mo9a2          61 ----------------------------------------------K-----------------D-NETRAYVLDRMKEQ   76 (121)
T ss_dssp             ----------------------------------------------C-----------------S-HHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------c-----------------c-cchhhhhhhhhhcc
Confidence                                                          0                 0 23455567777889


Q ss_pred             CCEEEcCceEEEEEEecccCCCeEEE---EcCCCcEEEcCEEEEcCC
Q 015088          167 GAVLRDNMEVKTVLKVKDAVKGGVTV---VTSNGEKFWGKKCVVTAG  210 (413)
Q Consensus       167 Gv~i~~~~~V~~i~~~~~~~~~~~~v---~~~~g~~i~ad~VV~A~G  210 (413)
                      |++++++++|++++.  ++++....+   ...++++++||.||+|+|
T Consensus        77 gI~v~~~~~v~~i~~--~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          77 GMEIISGSNVTRIEE--DANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TCEEESSCEEEEEEE--CTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccEEEcCCEEEEEEe--cCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999988  643332222   234556899999999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.06  E-value=6.4e-10  Score=83.29  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+++|||||++|+-+|..|+++|.+|+|+|+.+..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            47999999999999999999999999999987543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.4e-09  Score=79.56  Aligned_cols=36  Identities=31%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+++|||||+.|+-+|..|++.|.+|+|+|+++..
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            357999999999999999999999999999997654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=1e-09  Score=95.51  Aligned_cols=36  Identities=39%  Similarity=0.556  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLH   43 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~g   43 (413)
                      .||+|||||++|+++|+.|+++|. +|+|+|+.+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~   38 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR   38 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence            689999999999999999999996 999999987653

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.04  E-value=5.6e-10  Score=100.67  Aligned_cols=34  Identities=47%  Similarity=0.624  Sum_probs=32.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .||+||||+|.+|+.+|.+|++.|++|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5999999999999999999999999999999983

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.2e-09  Score=78.52  Aligned_cols=33  Identities=24%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+++|||||+.|+-.|..|++.|.+|+||+++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            457999999999999999999999999999864

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.02  E-value=2.5e-09  Score=97.22  Aligned_cols=35  Identities=26%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~   40 (413)
                      +.||+||||||.+|+.+|.+|++.+ ++|+|||++.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            4699999999999999999999976 7999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.00  E-value=7.6e-10  Score=100.23  Aligned_cols=34  Identities=29%  Similarity=0.447  Sum_probs=31.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..||||||+|++|+.+|++|+++|++|+|||++.
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            3699999999999999999999999999999963

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=6.9e-10  Score=90.62  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          152 PTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       152 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      +..+...+.+++++.|+++... +|.++..  .  ++.+.+.+..+. +.+|.+++++|..
T Consensus        66 ~~el~~~~~~q~~~~g~~i~~~-~V~~~~~--~--~~~~~v~~~~~~-~~~~~~~~a~g~~  120 (192)
T d1vdca1          66 GVELTDKFRKQSERFGTTIFTE-TVTKVDF--S--SKPFKLFTDSKA-ILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECC-CCCEEEC--S--SSSEEEECSSEE-EEEEEEEECCCEE
T ss_pred             chHHHHHHHHHHHhhcceeeee-eEEeccc--c--cCcEEeccccee-eeeeeEEEEeeee
Confidence            4567777888888899999854 6888877  5  456777776655 8899999999963

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.00  E-value=2.3e-09  Score=97.03  Aligned_cols=42  Identities=33%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHH------cCCcEEEEcccCCCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAK------RGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~------~g~~V~liE~~~~~gg~   45 (413)
                      +...|||||||||+||++||+.|++      +|++|+||||+..+|..
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            3446999999999999999999998      79999999999887543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.98  E-value=8.3e-10  Score=94.75  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=32.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ||++|||||++|+++|.+++++|++|+|||++..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~   35 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL   35 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            8999999999999999999999999999999754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.1e-09  Score=87.53  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=78.4

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCceeecccCCCChHHHHHHHHHHHHHHHHHhCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHPMVLESCLLWEQAQSEIGY   84 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (413)
                      +++.||+|||||++|++||.+|++.|.+|+|||+....+....+..    +.                            
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~----i~----------------------------   50 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE----VE----------------------------   50 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB----CC----------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch----hh----------------------------
Confidence            4578999999999999999999999999999998765421110000    00                            


Q ss_pred             eeEEeeceeeeCCCChhhHHHHHHHHhhCCCCccccCHHHHHHHcCCcccCCCCeEEEEecCCceeChHHHHHHHHHHHH
Q 015088           85 KVYFKAHQFDMGPSENKSLRSVIASCRKNSVPHQVLDCRQVLEKYSGRIEIPENWVGVATELGGVIKPTKAVSMFQTLAI  164 (413)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  164 (413)
                                                   .              ++.   ++.           ...+..+.+.+...+.
T Consensus        51 -----------------------------~--------------~~~---~~~-----------~~~~~~~~~~~~~~~~   73 (190)
T d1trba1          51 -----------------------------N--------------WPG---DPN-----------DLTGPLLMERMHEHAT   73 (190)
T ss_dssp             -----------------------------C--------------STT---CCS-----------SCBHHHHHHHHHHHHH
T ss_pred             -----------------------------h--------------hhc---ccc-----------ccchHHHHHHHHHHHH
Confidence                                         0              000   000           1123556667777788


Q ss_pred             HCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          165 KNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       165 ~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      +.++++.. .+|+.+..  .  ++.+.+.+..+. +.++.+|+++|..
T Consensus        74 ~~~~~~~~-~~V~~~~~--~--~~~~~v~~~~~~-~~~~~viva~G~~  115 (190)
T d1trba1          74 KFETEIIF-DHINKVDL--Q--NRPFRLNGDNGE-YTCDALIIATGAS  115 (190)
T ss_dssp             HTTCEEEC-CCEEEEEC--S--SSSEEEEESSCE-EEEEEEEECCCEE
T ss_pred             hcCcEEec-ceeEEEec--C--CCcEEEEEeeee-Eeeeeeeeeccee
Confidence            88999985 46888877  5  466777776665 8999999999964

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.93  E-value=7e-09  Score=94.36  Aligned_cols=36  Identities=28%  Similarity=0.517  Sum_probs=33.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcC-CcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~~~   41 (413)
                      +.||+||||||.+|+.+|.+|++.| ++|+|||++..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999998 79999999853

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=5.2e-10  Score=98.03  Aligned_cols=48  Identities=25%  Similarity=0.454  Sum_probs=42.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccCCCce
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRT   54 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~~~~~   54 (413)
                      ++||+|||||++|+++|++|+++|++|+|+|+++..||...+....|.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g~   48 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGI   48 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETTE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCCE
Confidence            379999999999999999999999999999999999887766544443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.4e-10  Score=100.68  Aligned_cols=46  Identities=33%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      +++.+|||||||++||+||++|+++|++|+|+|+++.+||+..+..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~   48 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR   48 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE
Confidence            4567899999999999999999999999999999999999877654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.3e-09  Score=83.72  Aligned_cols=41  Identities=29%  Similarity=0.378  Sum_probs=37.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHR   45 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~   45 (413)
                      ....+|+|||||++|+++|+.|+++|++|+|+|+.+.+||.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCce
Confidence            34679999999999999999999999999999999888754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.3e-08  Score=85.71  Aligned_cols=37  Identities=32%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      .|||+|||||++|++||.++++.|++|+|||+....+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            6999999999999999999999999999999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.80  E-value=1.7e-09  Score=94.13  Aligned_cols=43  Identities=42%  Similarity=0.508  Sum_probs=38.4

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCCCCCcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~gg~~~s~~   50 (413)
                      .||+|||||++|++||++|+++|+ +|+|+|+++.+||+..+..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~   44 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN   44 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec
Confidence            389999999999999999999996 7999999999988766543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=1.3e-09  Score=91.95  Aligned_cols=41  Identities=29%  Similarity=0.350  Sum_probs=37.5

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      |+++|||+|||||++|++||.+|++.|++|+|||++...||
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG   42 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG   42 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcce
Confidence            56789999999999999999999999999999999877654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.78  E-value=8.3e-09  Score=92.41  Aligned_cols=34  Identities=32%  Similarity=0.551  Sum_probs=31.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..||+||||+|.+|+.+|.+|++. ++|+|||++.
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~   58 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS   58 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence            458999999999999999999986 9999999986

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.71  E-value=4.2e-09  Score=93.33  Aligned_cols=42  Identities=31%  Similarity=0.376  Sum_probs=38.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSHG   50 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~~   50 (413)
                      +|+|||||++|++||++|+++|++|+|||+++.+||+..+..
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   44 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS   44 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec
Confidence            699999999999999999999999999999999988776643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.69  E-value=6.8e-09  Score=86.97  Aligned_cols=38  Identities=47%  Similarity=0.606  Sum_probs=35.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~g   43 (413)
                      ++|||+|||||+||++||.+|+++|++|+|||+....+
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~   39 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            57999999999999999999999999999999976553

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.68  E-value=5.4e-09  Score=92.02  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=38.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSSH   49 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s~   49 (413)
                      +..|+|||||++|+++|++|+++|++|+|+|+++..||...+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~   44 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDA   44 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEE
Confidence            3579999999999999999999999999999999998876554

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=7.1e-09  Score=86.22  Aligned_cols=36  Identities=31%  Similarity=0.490  Sum_probs=33.6

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ++|||+|||||++|+++|.+|++.|++|+|||++..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~~   36 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL   36 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCc
Confidence            479999999999999999999999999999999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=1.1e-08  Score=88.45  Aligned_cols=41  Identities=37%  Similarity=0.416  Sum_probs=36.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHH-cCCcEEEEcccCCCCCCCc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAK-RGQKTLLLEQFDFLHHRGS   47 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~-~g~~V~liE~~~~~gg~~~   47 (413)
                      .+||+|||||++|+++|++|++ .|++|+|||+++..|+...
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCcee
Confidence            6899999999999999999997 4999999999987765443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=7.4e-09  Score=86.90  Aligned_cols=40  Identities=35%  Similarity=0.587  Sum_probs=36.3

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      +..|||+|||||++|+++|.+|+++|++|+|||+....||
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG   43 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGG   43 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence            4579999999999999999999999999999999876654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.59  E-value=1.5e-08  Score=91.64  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      |+.+|||||||+|++|+++|.+|++.|++|+|||++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            346899999999999999999999999999999997543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.6e-09  Score=86.03  Aligned_cols=45  Identities=16%  Similarity=0.232  Sum_probs=37.1

Q ss_pred             HHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCCh
Q 015088          163 AIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWV  213 (413)
Q Consensus       163 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s  213 (413)
                      +++.|++++++++|++|+.  +  ++  .|++++|+++.+|.+|+|+|+-.
T Consensus        93 ~~~~gI~~~~g~~V~~id~--~--~~--~V~l~dG~~i~~d~lViAtG~~~  137 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDV--R--DN--MVKLNDGSQITYEKCLIATGGTE  137 (213)
T ss_dssp             STTCEEEEEETCCEEEEEG--G--GT--EEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHCCeEEEeCCEEEEeec--c--Cc--eeeeccceeeccceEEEeeeeec
Confidence            4567999999999999977  5  23  56788999999999999999643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.53  E-value=2e-07  Score=75.94  Aligned_cols=49  Identities=22%  Similarity=0.187  Sum_probs=38.0

Q ss_pred             HHHHHCCCEEEcCceEEEEEEecccCCCeEEEE-cCCCc--EEEcCEEEEcCCCCh
Q 015088          161 TLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVV-TSNGE--KFWGKKCVVTAGAWV  213 (413)
Q Consensus       161 ~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~-~~~g~--~i~ad~VV~A~G~~s  213 (413)
                      +.++++|++++++++|++++.  +  ++.+.++ ..+|+  ++.+|.+|+|+|.+.
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~--~--~~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQP--K--EHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEET--T--TTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEee--c--cccceeeecccccccccccceeeEeeccee
Confidence            456678999999999999987  6  4566665 34554  578999999999754

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.53  E-value=1.5e-07  Score=65.39  Aligned_cols=87  Identities=8%  Similarity=-0.150  Sum_probs=57.0

Q ss_pred             eeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CCCCCCCCCCCCCchhHHHHHHH
Q 015088          227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDRRPWGPGLLLDSLKEW  305 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  305 (413)
                      +.|+|||++.++.+....        ...+...   .+|++|..+  |.+.+|++. ....+...+    .+..+.|.++
T Consensus         1 l~PvKGq~l~v~~~~~~~--------~~~i~~~---~~yiip~~~--g~~~iG~T~e~~~~d~~~~----~~~~~~l~~~   63 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIPL--------TKTLYHD---HCYIVPRKS--GRLVVGATMKPGDWSETPD----LGGLESVMKK   63 (88)
T ss_dssp             CEEEEEEEEEEECCSSCC--------CSEEEET---TEEEEECTT--SEEEEECCCEETCCCCSCC----HHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCcc--------CCEEeCC---CEEEEECCC--CCEEEccEEEECCCCCCCC----HHHHHHHHHH
Confidence            479999999988543211        1122222   279998865  555554422 112222211    2278999999


Q ss_pred             HHhhcCCCCCCCCCeeeceeeeeecC
Q 015088          306 IQGRFAGRVDSNGPVATQLCMYSITP  331 (413)
Q Consensus       306 ~~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                      +.+++|.+.+. +++..|+|+||.|.
T Consensus        64 a~~~~P~l~~~-~v~~~waGlRP~t~   88 (88)
T d1ryia2          64 AKTMLPAIQNM-KVDRFWAGLRPGTK   88 (88)
T ss_dssp             HHHHCGGGGGS-EEEEEEEEEEEECS
T ss_pred             HHHHCCCcCCC-cEeEEEEeeCCCCC
Confidence            99999999875 78899999999874

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.52  E-value=6.4e-08  Score=68.20  Aligned_cols=93  Identities=9%  Similarity=-0.195  Sum_probs=58.3

Q ss_pred             eeEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCCCCCCCCCCCCCCCchhHHHHHHHH
Q 015088          227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHGGYPCDPDRRPWGPGLLLDSLKEWI  306 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  306 (413)
                      ++|+|||++.++.+.. ...+...  .+.  .......|++|..+  +++.+++......+...   + .+..+.|++++
T Consensus         1 i~PvrGQil~v~~P~~-~~~~~~~--~~~--~~~~~~~yivpr~~--~~viG~T~e~~~~d~~~---~-~~~~~~i~~~a   69 (93)
T d1kifa2           1 LQPGRGQIIKVDAPWL-KNFIITH--DLE--RGIYNSPYIIPGLQ--AVTLGGTFQVGNWNEIN---N-IQDHNTIWEGC   69 (93)
T ss_dssp             CEEEEEEEEEEECTTC-CSEEEEE--CTT--TCTTCSCEEEECSS--SEEEECCCEETCCCCSC---C-HHHHHHHHHHH
T ss_pred             CccccceEEEEcCCCC-ccceeec--ccc--ccCCCceEEEECCC--CEEEEEEeecCCCCCCC---C-HHHHHHHHHHH
Confidence            5799999999985421 1110000  000  01223479999854  66655543222222221   1 22789999999


Q ss_pred             HhhcCCCCCCCCCeeeceeeeeecC
Q 015088          307 QGRFAGRVDSNGPVATQLCMYSITP  331 (413)
Q Consensus       307 ~~~~p~~~~~~~~~~~~~g~~~~t~  331 (413)
                      .+++|.+.+. +++..|+|+||.+|
T Consensus        70 ~~~~P~l~~~-~i~~~~~GlRP~rP   93 (93)
T d1kifa2          70 CRLEPTLKDA-KIVGEYTGFRPVRP   93 (93)
T ss_dssp             HHHSGGGGGC-EEEEEEEEEEEECS
T ss_pred             HHHHhhhcCC-CeeeEEEeecCCCC
Confidence            9999999986 88899999999986

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=1.4e-07  Score=78.99  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC---CcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG---QKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g---~~V~liE~~~~~   42 (413)
                      .+|+|||||++|++||.++++.|   ++|+|+|+...+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~G   39 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIG   39 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCC
Confidence            47999999999999999998865   579999997654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=3.5e-08  Score=82.09  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .+.++|++|||||++|+++|..+++.|.+|+|||++..+
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~G   40 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALG   40 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            345799999999999999999999999999999997543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.50  E-value=3.7e-08  Score=82.02  Aligned_cols=36  Identities=36%  Similarity=0.428  Sum_probs=33.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +|||+|||||++|+++|.++++.|++|+|||+...+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~G   38 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLG   38 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence            699999999999999999999999999999997664

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.1e-08  Score=81.68  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=33.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      +||++|||||++|+++|.++++.|++|+|||++..+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence            699999999999999999999999999999997654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.47  E-value=6.4e-08  Score=78.79  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFLH   43 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~g   43 (413)
                      ...+|+|||||++|+++|++|+++|+ +|+|+|+.+..+
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG   41 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence            35689999999999999999999998 599999988764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.45  E-value=1.1e-07  Score=79.79  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ....+|+|||||++|+++|..|+++|++|+|+|+++..||
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCC
Confidence            4568999999999999999999999999999999987754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=6.4e-08  Score=77.93  Aligned_cols=33  Identities=36%  Similarity=0.607  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|||+|||||++|++||.++++.|++|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            389999999999999999999999999999975

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=5.3e-08  Score=82.00  Aligned_cols=38  Identities=24%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcC-------CcEEEEcccCCCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRG-------QKTLLLEQFDFLHH   44 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g-------~~V~liE~~~~~gg   44 (413)
                      .++|+|||||+||++||++|+++|       ++|+|+|+.+.+||
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCC
Confidence            468999999999999999999988       58999999988865

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=1.8e-07  Score=73.98  Aligned_cols=54  Identities=24%  Similarity=0.195  Sum_probs=38.3

Q ss_pred             HHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCChHHhhhhhcCC
Q 015088          162 LAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAWVGKLVKRITGL  223 (413)
Q Consensus       162 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~s~~l~~~~~g~  223 (413)
                      ...+.++++++++.|+.+..  .   ..  +.+.+++++.+|.+|+|+|.....+.... ++
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~--~---~~--~~~~~~~~i~~D~li~a~G~~~~~~~~~~-gl  114 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDR--G---RK--VVITEKGEVPYDTLVLATGAPNVDLARRS-GI  114 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEET--T---TT--EEEESSCEEECSEEEECCCEECCHHHHHT-TC
T ss_pred             HHHhccceeeeecccccccc--c---cc--cccccccccccceeEEEEEecCCchhhhc-Cc
Confidence            34456899999999998865  3   22  22335556999999999998666666554 54

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.42  E-value=6.5e-08  Score=86.64  Aligned_cols=38  Identities=32%  Similarity=0.357  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCHHHHHHHHHHH-----HcCCcEEEEcccCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLA-----KRGQKTLLLEQFDFL   42 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~-----~~g~~V~liE~~~~~   42 (413)
                      ++.|||+|||||++|+++|..|+     ++|++|+|||+.+..
T Consensus         5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            45799999999999999999997     469999999998765

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=2.2e-07  Score=81.53  Aligned_cols=41  Identities=39%  Similarity=0.399  Sum_probs=36.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHHRG   46 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg~~   46 (413)
                      ..+||+|||||++|++||++|+++  |++|+|+|++..+||..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   91 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS   91 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCccee
Confidence            358999999999999999999975  99999999998886543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=2.4e-07  Score=77.42  Aligned_cols=37  Identities=24%  Similarity=0.190  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKR--GQKTLLLEQFDFLHH   44 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~--g~~V~liE~~~~~gg   44 (413)
                      .+|+|||||+||++||.+|+++  |++|+|+|+.+.+||
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            4799999999999999999876  779999999988753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.28  E-value=4.4e-07  Score=77.35  Aligned_cols=40  Identities=25%  Similarity=0.535  Sum_probs=36.7

Q ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 015088            5 GEKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHH   44 (413)
Q Consensus         5 ~~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg   44 (413)
                      ...||+||||||++|+.+|..|++.|.+|+|||+....||
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG   79 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGG   79 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccc
Confidence            3579999999999999999999999999999999887754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.23  E-value=8.4e-07  Score=71.11  Aligned_cols=41  Identities=17%  Similarity=0.065  Sum_probs=33.5

Q ss_pred             CCCEEEcCceEEEEEEecccCCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          166 NGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       166 ~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      .+++++++++|+++..  +  ..  .+.+.+|+++.+|.+|+|+|..
T Consensus        68 ~~i~~~~~~~v~~i~~--~--~~--~~~~~~g~~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDP--Q--AH--TVALSDGRTLPYGTLVLATGAA  108 (183)
T ss_dssp             TTCEEEETCCEEEEET--T--TT--EEEETTSCEEECSEEEECCCEE
T ss_pred             CCeEEEEecccccccc--c--cc--eeEecCCcEeeeeeEEEEEEEE
Confidence            4789999999999876  4  22  4567889899999999999964

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.19  E-value=7.4e-07  Score=74.64  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~   42 (413)
                      +.|||+|||||++|+++|.++++.|. +|+|+|+....
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~   39 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH   39 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc
Confidence            57999999999999999999999886 68899986543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.18  E-value=5.2e-07  Score=75.85  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=33.2

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~   42 (413)
                      ++|||||||||+||+++|.++++.|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccC
Confidence            57999999999999999999999985 69999987654

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.18  E-value=1.1e-06  Score=61.92  Aligned_cols=87  Identities=7%  Similarity=-0.096  Sum_probs=54.3

Q ss_pred             eEEEEEEEEEEecCCCCCccccCCCCCeEEEcCCCceEecCCCCCCCcEEEe-cCCCCCCCCCCCCCCCchhHHHHHHHH
Q 015088          228 QAVETTVCYWRIKEGNEADYAVGGDFPSFASYGDPYIYGTPSLEYPGLIKIA-LHGGYPCDPDRRPWGPGLLLDSLKEWI  306 (413)
Q Consensus       228 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  306 (413)
                      +|+|||++.++.+...         ............|++|..+  |.+.+| +......++..+    .+..+.|++++
T Consensus         2 ~PvRGQ~~~v~~p~~~---------~~~~~~~~~~~~Yiipr~~--g~vviG~T~e~~~~d~~~~----~~~~~~il~~a   66 (95)
T d1c0pa2           2 EPIRGQTVLVKSPCKR---------CTMDSSDPASPAYIIPRPG--GEVICGGTYGVGDWDLSVN----PETVQRILKHC   66 (95)
T ss_dssp             EEEEEEEEEEECCCCC---------CEEECSCTTCCEEEEEETT--TEEEEECCCEETCCCCSCC----HHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCc---------ccEEEecCCCeEEEEECCC--CEEEEEEEEEECCCcCCCC----HHHHHHHHHHH
Confidence            6899999999854311         1111122334579999864  544444 432222233222    22789999999


Q ss_pred             HhhcCCCCCC-----CCCeeeceeeeee
Q 015088          307 QGRFAGRVDS-----NGPVATQLCMYSI  329 (413)
Q Consensus       307 ~~~~p~~~~~-----~~~~~~~~g~~~~  329 (413)
                      .+++|.+.+.     .+++..|+|+||.
T Consensus        67 ~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          67 LRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             HHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             HHhCccccccccccCccEEEeEEEeCCC
Confidence            9999998521     2567899999995

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.01  E-value=4.3e-05  Score=58.96  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ccEEEE--CCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVV--GAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvII--GaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..++||  |||..|+.+|-.|+++|.+|+|+++.+..
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            345555  99999999999999999999999987543

>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.70  E-value=7.1e-05  Score=53.08  Aligned_cols=98  Identities=24%  Similarity=0.350  Sum_probs=68.2

Q ss_pred             eeEEEEEEEEEEecCCCCCccccCCCCCeEEE-cCCCceEecCCCCCCCcEEEec-CCCCCCCCCCCCC--CC-chhHHH
Q 015088          227 IQAVETTVCYWRIKEGNEADYAVGGDFPSFAS-YGDPYIYGTPSLEYPGLIKIAL-HGGYPCDPDRRPW--GP-GLLLDS  301 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~p~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~  301 (413)
                      +++.|..+.+++..+.  ..+.. .++|++.. ..+..+|+.|..+..| ++++. +.+...+|+..+.  .. .+..+.
T Consensus         1 L~v~Rq~~~wf~~~~~--~~~~~-~~fP~fi~~~~~~~~YGfP~~~~~g-~Ki~~~~~g~~~dPd~~dr~~~~~~~~~~~   76 (104)
T d2gf3a2           1 LQPYRQVVGFFESDES--KYSND-IDFPGFMVEVPNGIYYGFPSFGGCG-LKLGYHTFGQKIDPDTINREFGVYPEDESN   76 (104)
T ss_dssp             CEEEEEEEEEECCCHH--HHBGG-GTCCEEEEEETTEEEEEECBSTTCC-EEEEESSCCEECCTTTCCCCTTSSHHHHHH
T ss_pred             CeEEEEEEEEecCCCc--ccccc-CCCCEEEEECCCCeEEecCCCCCCc-eEEEEecCCCccCccccccCCCCCHHHHHH
Confidence            3566777777764322  22222 45999874 3455799999998877 56666 4566677776443  22 236789


Q ss_pred             HHHHHHhhcCCCCCCCCCeeeceeeeeec
Q 015088          302 LKEWIQGRFAGRVDSNGPVATQLCMYSIT  330 (413)
Q Consensus       302 l~~~~~~~~p~~~~~~~~~~~~~g~~~~t  330 (413)
                      +.+++.++||++.  ..++...+|.+.+|
T Consensus        77 l~~~v~~~~Pgl~--~~p~~~~~C~YT~T  103 (104)
T d2gf3a2          77 LRAFLEEYMPGAN--GELKRGAVCMYTKT  103 (104)
T ss_dssp             HHHHHHHHCGGGC--SCEEEEEEEEEEEC
T ss_pred             HHHHHHHHCCCCC--CCeeeccEeeEccc
Confidence            9999999999997  35778899998876

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=0.00023  Score=55.03  Aligned_cols=47  Identities=19%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             HHHHHHHHCCCEEEcCceEEEEEEecccCCCeEEEEcCCCc-EEEcCEEEEcCC
Q 015088          158 MFQTLAIKNGAVLRDNMEVKTVLKVKDAVKGGVTVVTSNGE-KFWGKKCVVTAG  210 (413)
Q Consensus       158 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~v~~~~g~-~i~ad~VV~A~G  210 (413)
                      .....++..|++++.+++|.++..  +    ++.+...+.+ .+.||.||+|+|
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~--~----gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDD--D----GLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEET--T----EEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcC--C----CCEEecCCeEEEEECCEEEECCC
Confidence            345667788999999999998855  3    3444433322 689999999999

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.49  E-value=3.8e-05  Score=60.81  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcC--CcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRG--QKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g--~~V~liE~~~~   41 (413)
                      .+|+|||||.+|+.+|..|.+.+  .+|+|||+++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            37999999999999999999987  48999998754

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.0001  Score=51.10  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..|+|+|.|.+|+++|..|.++|.+|++.|.+...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            47999999999999999999999999999987543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.29  E-value=0.0001  Score=58.37  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      .-+|+|||||.+|+.+|..|++.|.+|+|++.....
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            358999999999999999999999999888876543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.24  E-value=9e-05  Score=58.51  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|+|||+|..|..+|.+|+++|++|+|+|++.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            469999999999999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0059  Score=44.43  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||+|-+++-.|..|++...+|+|+-+++.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            35899999999999999999999999999988653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00021  Score=55.45  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +|+|||+|..|...|..|++.|++|+++++...
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            599999999999999999999999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.10  E-value=0.00022  Score=56.34  Aligned_cols=32  Identities=31%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..|+|||+|..|+..|..|+++|++|++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            36999999999999999999999999999985

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.94  E-value=0.00041  Score=51.47  Aligned_cols=32  Identities=25%  Similarity=0.487  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|+|+|..|...|..|.+.|++|++||++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            59999999999999999999999999999864

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0053  Score=44.64  Aligned_cols=35  Identities=34%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..+|+|||+|-+.+-.|.+|++...+|+||-+++.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            35899999999999999999999899999988654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00049  Score=54.62  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            479999999999999999999999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.72  E-value=0.00061  Score=53.80  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..|.|||+|..|...|..++.+|++|+++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.62  E-value=0.0007  Score=54.32  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|.|||.|..|+.+|..|+++|++|+.+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            49999999999999999999999999999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.57  E-value=0.0012  Score=50.17  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=31.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||+|.+|+.++..+.+.|.+|+++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            578999999999999999999999999999985

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.51  E-value=0.0011  Score=49.10  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +++|||.|-.|..+|..|.+.|++|+++|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence            58999999999999999999999999999874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.49  E-value=0.0014  Score=49.20  Aligned_cols=37  Identities=27%  Similarity=0.514  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      |.++.+|.|||+|-.|.++|+.|+.+|.  +++|+|...
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3456799999999999999999999884  899999753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.47  E-value=0.0016  Score=50.22  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|+|||+|.+|+.+|.-+...|..|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence            4689999999999999999999999999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.45  E-value=0.0018  Score=49.19  Aligned_cols=38  Identities=21%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             CCCCcccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            3 FPGEKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         3 ~~~~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      +++++.+|.|||+|-.|.++|+.|+..++ +++|+|.+.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            45678899999999999999999999886 899999754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0028  Score=47.98  Aligned_cols=36  Identities=25%  Similarity=0.404  Sum_probs=32.1

Q ss_pred             CCcccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            5 GEKFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         5 ~~~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .....|.||| .|..|.+.|..|.++|++|.++|+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            3446899999 69999999999999999999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.26  E-value=0.0016  Score=51.44  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+|+|||+|.-|.+.|..|++.|++|+|+.++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            47999999999999999999999999999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.20  E-value=0.0024  Score=49.21  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|.+.|..|+++|++|+++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            49999999999999999999999999999863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.05  E-value=0.0026  Score=49.75  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|.|||+|..|.+.|..|++.|++|.|+.+.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5999999999999999999999999999763

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.00  E-value=0.0038  Score=47.20  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      -+|+|||||-+|+=+|..|.+.|. +|+++.+++.
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            479999999999999999999986 5889987653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.92  E-value=0.0047  Score=46.36  Aligned_cols=36  Identities=28%  Similarity=0.536  Sum_probs=31.2

Q ss_pred             CCCcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            4 PGEKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         4 ~~~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      ++...+|.|||+|-.|.++|+.|+..|+  +++|+|..
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            3445789999999999999999999876  79999975

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0058  Score=55.07  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             EEecCCceeChHHHHHHHHHHHHHCCCEEEcCceEEEEEEeccc-CCCeEEEEcCCCcEEEcCEEEEcCCCC
Q 015088          142 VATELGGVIKPTKAVSMFQTLAIKNGAVLRDNMEVKTVLKVKDA-VKGGVTVVTSNGEKFWGKKCVVTAGAW  212 (413)
Q Consensus       142 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~~~~~v~~~~g~~i~ad~VV~A~G~~  212 (413)
                      ++.+..|.   ..+.+.+.+.+.-.|+.+.+++.|.+|..  ++ ++....|.+++|+++.+++||......
T Consensus       368 flyp~YG~---gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~--d~e~~~~~~v~~~~g~~i~~k~vI~~psy~  434 (491)
T d1vg0a1         368 FLFPLYGQ---GELPQCFCRMCAVFGGIYCLRHSVQCLVV--DKESRKCKAVIDQFGQRIISKHFIIEDSYL  434 (491)
T ss_dssp             EEEETTCT---THHHHHHHHHHHHTTCEEESSCCEEEEEE--ETTTCCEEEEEETTSCEEECSEEEEEGGGB
T ss_pred             eEeecCCc---chHHHHHHHHHHhcCcEEEcCCccceEEE--ecCCCeEEEEEccCCcEEecCeEEECHHhC
Confidence            34444444   58889999999889999999999999987  53 234556778889999999998776543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.0085  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||+|-.|..-|..|.+.|.+|+++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            468999999999999999999999999999864

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.38  E-value=0.0064  Score=48.05  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=29.0

Q ss_pred             cEEEE-CCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVV-GAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvII-GaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|+|| |+|-.|.+.|..|++.|++|+|..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999 679999999999999999999999853

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0055  Score=46.18  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=30.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|||||..|+.-|..|.+.|.+|+||...
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999999999999999999999999654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.17  E-value=0.012  Score=45.46  Aligned_cols=34  Identities=15%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +.+|-|||-|..|...|..|.++|++|.++++..
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            3579999999999999999999999999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.09  E-value=0.013  Score=44.34  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=31.0

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      .+..|.|||+|-.|.++|+.|...|+  +++|+|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            35699999999999999999999987  89999975

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.02  E-value=0.0075  Score=47.71  Aligned_cols=31  Identities=19%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|||.|..|+.+|..|+ +|++|+.+|-+.
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            4999999999999998886 599999999764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.91  E-value=0.015  Score=43.11  Aligned_cols=32  Identities=31%  Similarity=0.668  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|.|||+|-.|.++|+.|+..+.  +++|+|...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            59999999999999999999874  899999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.85  E-value=0.015  Score=43.16  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ..|.|||+|-.|.++|+.|+..+. +++++|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            369999999999999999999876 899999754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=94.84  E-value=0.015  Score=44.64  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=31.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|+|+|+|-++.++++.|.+.|.+|+|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            4689999999999999999999999999998863

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.82  E-value=0.014  Score=43.54  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      .+|.|||+|-.|.++|+.|..+|.  +++|+|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            369999999999999999999875  79999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.79  E-value=0.018  Score=42.64  Aligned_cols=34  Identities=35%  Similarity=0.634  Sum_probs=29.2

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~~   41 (413)
                      .+|.|||+|-.|.++|+.|..+++  ++.|+|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            369999999999999999999886  7999997653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.79  E-value=0.014  Score=43.21  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|.|||+|-.|.++|+.|+.+|.  +++|+|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            59999999999999999998875  699999653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.74  E-value=0.014  Score=44.51  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .|.|||-|..|...|.+|.++|++|.++|++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4999999999999999999999999999986

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.69  E-value=0.019  Score=42.59  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      .+|.|||+|-.|.++|+.|..+|+  +++|+|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            369999999999999999999987  799999653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.64  E-value=0.02  Score=44.32  Aligned_cols=32  Identities=38%  Similarity=0.636  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ++|-|||-|..|...|.+|.++|++|.+.|+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            35999999999999999999999999999975

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.64  E-value=0.014  Score=44.46  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||-|..|...|..|+++|++|.++|++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            49999999999999999999999999999853

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.018  Score=43.46  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      +..|.|||+|-.|.++|+.|...|+  +++|+|..
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4579999999999999999999886  79999975

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.57  E-value=0.012  Score=41.22  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|||+|.+|+-.|..|++...+|+++-++.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            589999999999999999999888887776643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.023  Score=42.64  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|+|+|.|-.|..++..|.++|.+|++||...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            69999999999999999999999999999764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.34  E-value=0.021  Score=42.14  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=27.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      +|.|||+|-.|.++|+.|+.++.  ++.|+|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            59999999999999999998875  79999965

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.32  E-value=0.028  Score=41.98  Aligned_cols=34  Identities=21%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      +.+|.|||+|-.|.++|+.|.+.+. +++|+|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            4579999999999999999888875 799999754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.32  E-value=0.02  Score=42.55  Aligned_cols=31  Identities=35%  Similarity=0.495  Sum_probs=28.0

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEccc
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQF   39 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~--~V~liE~~   39 (413)
                      +|.|||| |-.|.++|+.|+.++.  ++.|+|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            5999996 9999999999999985  89999875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.13  E-value=0.023  Score=42.64  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +|.|||.|..|...|..|+++|++|++.++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            59999999999999999999999999988653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.04  E-value=0.029  Score=42.91  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      .|.|||.|..|.+.|..|.+.|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            49999999999999999999986  677788753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.99  E-value=0.027  Score=43.08  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            368999999999999998888999999999763

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.053  Score=38.69  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=34.8

Q ss_pred             CCCCCCcccEEEECCCH-----------HHHHHHHHHHHcCCcEEEEcccCC
Q 015088            1 MEFPGEKFDVIVVGAGI-----------MGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG~-----------aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      |.+.+....|+|||+|+           ++..++..|.+.|++++++.-++.
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            55555667899999985           789999999999999999998765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.86  E-value=0.032  Score=42.58  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ...+|+|+|+|-++.++++.|.+.|. +|.|+.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            34689999999999999999999996 79999875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.82  E-value=0.024  Score=42.05  Aligned_cols=32  Identities=25%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCC--cEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQ--KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~--~V~liE~~~   40 (413)
                      +|.|||| |-.|.++|+.|+.+|.  +++|+|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899996 9999999999999886  699999753

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.038  Score=43.69  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .+|+|+|| |..|..++.+|.++|++|+++.|+.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            35999995 9999999999999999999998864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.038  Score=42.28  Aligned_cols=33  Identities=21%  Similarity=0.326  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|+++
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            369999999999999999988998 799998753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.50  E-value=0.039  Score=40.00  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ..+|+|||+|-+.+-.|.+|++.-.+|+||-+++..
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            468999999999999999999999999999988654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.051  Score=38.08  Aligned_cols=36  Identities=17%  Similarity=0.412  Sum_probs=32.5

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ....|.|||||--|...|....+.|++|.++|.+..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            346799999999999999999999999999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.04  Score=42.06  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|.+|++++.++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccccch
Confidence            469999999999999888878899999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.22  E-value=0.045  Score=41.62  Aligned_cols=32  Identities=19%  Similarity=0.112  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|.+|++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            46999999999999998888889999999875

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.039  Score=45.14  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=31.6

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ...|+|||+|-.|..+|..|++.|. +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4689999999999999999999998 8999997654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.084  Score=37.13  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CcccEEEECCC-----------HHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            6 EKFDVIVVGAG-----------IMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG-----------~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ....|+|||+|           .++..++..|.+.|++++++.-++..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            34679999999           68999999999999999999988653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.60  E-value=0.055  Score=45.52  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +.+|+|+|| |..|...+.+|.++|++|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            456999997 9999999999999999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.29  E-value=0.0027  Score=52.02  Aligned_cols=36  Identities=8%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~   42 (413)
                      ...|+|||||..|+-+|..|++.|.+|+|+++++..
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~  215 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETI  215 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEecccc
Confidence            357899999999999999999999999999998776

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.24  E-value=0.079  Score=38.94  Aligned_cols=30  Identities=37%  Similarity=0.659  Sum_probs=26.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHcCC--cEEEEcc
Q 015088            9 DVIVVG-AGIMGSSAAYQLAKRGQ--KTLLLEQ   38 (413)
Q Consensus         9 dvvIIG-aG~aG~~~A~~L~~~g~--~V~liE~   38 (413)
                      +|.||| +|-.|.++|+.|..++.  ++.|+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            589999 69999999999999986  6899884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.15  E-value=0.056  Score=41.78  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccccccccccccccc
Confidence            468999999999999998888897 799998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=92.06  E-value=0.07  Score=36.25  Aligned_cols=37  Identities=19%  Similarity=0.060  Sum_probs=32.1

Q ss_pred             CCCCcccEEEECCCHHHHHH-HHHHHHcCCcEEEEccc
Q 015088            3 FPGEKFDVIVVGAGIMGSSA-AYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         3 ~~~~~~dvvIIGaG~aG~~~-A~~L~~~g~~V~liE~~   39 (413)
                      +++....|-+||-|-+|+++ |..|.++|++|+--|..
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            34566789999999999988 99999999999998875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.01  E-value=0.063  Score=40.10  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      +|.|||+|-.|.+.|..|.+.|+++++.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            5899999999999999999999999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=91.93  E-value=0.062  Score=41.07  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|+|+|-++.++++.|.+.+.+|+|+.|.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            457999999999999999999988899999986

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.85  E-value=0.094  Score=39.41  Aligned_cols=34  Identities=38%  Similarity=0.544  Sum_probs=30.1

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      ....|+|||+|-+|..+|..|..+|. +++|+.|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            35679999999999999999999998 58888875

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.77  E-value=0.076  Score=44.33  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=31.6

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +.+|+|+|| |..|..++.+|.++|++|+++.+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            467999997 99999999999999999999998643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.088  Score=40.00  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|.++++++...
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            469999999999999988888899999988753

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.54  E-value=0.095  Score=39.06  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=27.9

Q ss_pred             cEEEECCCHHHHHHHHHHHHcC-CcEEEEccc
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRG-QKTLLLEQF   39 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g-~~V~liE~~   39 (413)
                      +|.+||+|-.|.+.|..|.+.| ++|.+.+++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            4999999999999999998887 899999885

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.33  E-value=0.059  Score=44.68  Aligned_cols=34  Identities=21%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +++|+|.|| |..|...+.+|.++|++|+.+++..
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            356999998 9999999999999999999999864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.12  Score=39.74  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...|+|||+|-+|.++++.|.+.|. +++|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            3689999999999999999999987 788888753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.24  E-value=0.11  Score=39.68  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            469999999999999998888896 79999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.03  E-value=0.12  Score=44.72  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=31.1

Q ss_pred             CcccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            6 EKFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         6 ~~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +.+.|+|.| +|..|..++.+|.++|++|+++++..
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            456799998 79999999999999999999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.1  Score=33.60  Aligned_cols=33  Identities=18%  Similarity=0.086  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      .|.|||||=-|...+....+.|++|.+++....
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            589999999999999999999999999998653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.80  E-value=0.13  Score=39.40  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      --|+|+|+|..|+.+...+...|. +|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            349999999999999999999985 799999864

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.14  Score=37.77  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHc-C--CcEEEEcccC
Q 015088            9 DVIVVG-AGIMGSSAAYQLAKR-G--QKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIG-aG~aG~~~A~~L~~~-g--~~V~liE~~~   40 (413)
                      +|.||| +|-.|.++|+.|+.+ +  .++.|+|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            599999 599999999998643 4  5899999753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.67  E-value=0.096  Score=40.20  Aligned_cols=32  Identities=22%  Similarity=0.451  Sum_probs=28.3

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ..+|+|||+|-++-++++.|.+.| +|.|+.|.
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            457999999999999999998777 89999885

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.55  E-value=0.5  Score=33.21  Aligned_cols=100  Identities=12%  Similarity=-0.017  Sum_probs=55.0

Q ss_pred             eeEEEEEEEEEEecCCCCCcc--ccCCCCCeEEEcCCCceEecCCCCCCCcEEEecCC-CCCCCCCCC----------CC
Q 015088          227 IQAVETTVCYWRIKEGNEADY--AVGGDFPSFASYGDPYIYGTPSLEYPGLIKIALHG-GYPCDPDRR----------PW  293 (413)
Q Consensus       227 ~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~~~-~~~~~~~~~----------~~  293 (413)
                      +.|+..|+++...-+.....-  .....+|++...+. .+|.++..+  |++.+++.. ...++++..          ++
T Consensus         1 lvPveHqY~vTepip~l~~~~~~~~~~~~P~vRD~d~-~~Y~R~e~~--gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~   77 (119)
T d1pj5a3           1 LLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQ-DLYYREHGD--RYGIGSYAHRPMPVDVDTLGAYAPETVSEHH   77 (119)
T ss_dssp             CEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGG-TEEEEEETT--EEEEEECCSCCCBCCGGGSCCCCGGGCBTTB
T ss_pred             CccccceEEeecCchHhhhcccccCCCCCCEEEeCCC-CEEEEEeCC--eEEEeecCCCCcccccccccccCccCCCccc
Confidence            357778888765333211000  01134787766554 589987643  766666532 111222110          00


Q ss_pred             CC------chhHHHHHHHHHhhcCCCCCCCCCeeeceeeeeec
Q 015088          294 GP------GLLLDSLKEWIQGRFAGRVDSNGPVATQLCMYSIT  330 (413)
Q Consensus       294 ~~------~~~~~~l~~~~~~~~p~~~~~~~~~~~~~g~~~~t  330 (413)
                      ..      .+.++...+.+.+++|.+.++ .+.....|...+|
T Consensus        78 ~~~~~~~d~d~~~~~~e~a~~r~P~l~~~-gi~~~~NGp~sfT  119 (119)
T d1pj5a3          78 MPSRLDFTLEDFLPAWEATKQLLPALADS-EIEDGFNGIFSFT  119 (119)
T ss_dssp             STTEECCCHHHHHHHHHHHHHHCGGGGGS-CEEEEEEEEEEEC
T ss_pred             chhhCCCcHHHHHHHHHHHHHhcCCcccc-cccceeecCcccC
Confidence            00      114566778888999999976 5555677877665

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.54  E-value=0.14  Score=39.11  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=28.0

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            469999999999999999999998 566777653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.32  E-value=0.16  Score=39.48  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ...|+|.| +|-.|..+|..|+++|.+|++++++.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            35688888 69999999999999999999999863

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.04  E-value=0.13  Score=38.81  Aligned_cols=32  Identities=19%  Similarity=0.115  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|.+|++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            46899999999999988888889999999864

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.02  E-value=0.16  Score=39.60  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=27.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            479999999999999998887776 78888865

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.61  E-value=0.16  Score=40.52  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..+|+|||+|-+|+-+|+.|++.+.+++++=+..
T Consensus        32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            3689999999999999999999999888887754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.48  E-value=0.21  Score=38.01  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=26.0

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEE-cc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLL-EQ   38 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~li-E~   38 (413)
                      .-.|+|+|+|..|+.++..+...|.+++++ +.
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            347999999999999999888888866554 43

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=88.11  E-value=0.29  Score=41.86  Aligned_cols=34  Identities=29%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             CcccEEEECC-CHHHHHHHHHHHHcCCcEEEEccc
Q 015088            6 EKFDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         6 ~~~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      .+..|+|+|| |..|..++.+|.++|++|.++-|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            3567999996 999999999999999999999775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.01  E-value=0.085  Score=37.91  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             CcccEEEECCCHHHHHHHHHHHH-cCCc-EEEEcccCCC
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAK-RGQK-TLLLEQFDFL   42 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~-~g~~-V~liE~~~~~   42 (413)
                      +++.|+|+|||-+|...+.++.+ .+++ |..+|-+...
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46789999999999988877654 3555 5667765543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.19  Score=44.39  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~   41 (413)
                      ..+|+|||+|-.|+.+|..|+..|. +++|+|.+..
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            4689999999999999999999998 8999998654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=87.48  E-value=0.28  Score=37.27  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=28.1

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -.|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            358999999999999999998886 688888753

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.24  E-value=0.33  Score=39.40  Aligned_cols=31  Identities=16%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |+|.|| +-.|.++|..|++.|.+|++++++.
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            445564 6689999999999999999999864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.82  E-value=0.18  Score=37.54  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=21.9

Q ss_pred             CcccEEEECC-CHHHHHHHHHHHHcC
Q 015088            6 EKFDVIVVGA-GIMGSSAAYQLAKRG   30 (413)
Q Consensus         6 ~~~dvvIIGa-G~aG~~~A~~L~~~g   30 (413)
                      ...+|.|||| |..|.++|+.|+..+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            4568999997 999999999999865

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.37  Score=35.92  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..++|||-|-.|-.+|..|...|.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            469999999999999999999999999999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.04  E-value=0.33  Score=41.25  Aligned_cols=32  Identities=31%  Similarity=0.634  Sum_probs=28.1

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|+|| |..|..++.+|.++|++|+++++-.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~   34 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLC   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4888865 9999999999999999999998643

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.47  E-value=0.44  Score=39.57  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             CCCCCCcccEEEECCC---HHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG---~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |.+.-+...++|.||+   -.|..+|..|+++|.+|++..+.
T Consensus         2 ~~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           2 LPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            4433334568899975   48999999999999999998764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.36  E-value=0.24  Score=40.50  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=27.4

Q ss_pred             ccEEEECCC-HHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAG-IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG-~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .-++|.||+ -.|.++|..|+++|.+|++.+++.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            446666665 489999999999999999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.26  E-value=0.47  Score=35.93  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      -|+|+|+|..|++++..++..|. +|++++.+.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            48999999999999999999874 888888754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=85.13  E-value=0.49  Score=36.77  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCCcEEEEccc
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      ...|+|-|-|-.|..+|.+|.+.|.+|++.|.+
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            357999999999999999999999999998864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.84  E-value=0.52  Score=35.62  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      .|+|+|+|..|+.++..++..|. +|+.++..+
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            48899999999999999998876 688888754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.48  E-value=0.46  Score=35.23  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..++|+|=|-.|-.+|.+|...|.+|+|.|.++.
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            5799999999999999999999999999998753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.41  E-value=0.59  Score=37.60  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CCCCCCcccEEEECCC-HHHHHHHHHHHHcCCcEEEEccc
Q 015088            1 MEFPGEKFDVIVVGAG-IMGSSAAYQLAKRGQKTLLLEQF   39 (413)
Q Consensus         1 m~~~~~~~dvvIIGaG-~aG~~~A~~L~~~g~~V~liE~~   39 (413)
                      |.+.-.-..++|.||+ -.|.++|..|++.|.+|++++++
T Consensus         1 M~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            5432233456666654 57899999999999999999985

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.64  E-value=0.77  Score=30.24  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=27.7

Q ss_pred             ccEEEECCCHHHHHH-HHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAGIMGSSA-AYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~-A~~L~~~g~~V~liE~~~   40 (413)
                      .+|-+||-|-+|+++ |..|.++|++|+--|...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            468889999999965 888899999999998753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.60  E-value=0.51  Score=37.45  Aligned_cols=35  Identities=11%  Similarity=0.103  Sum_probs=29.4

Q ss_pred             cccEEEECCCHHHHHHHHHHHHc--------------------C-CcEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKR--------------------G-QKTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~--------------------g-~~V~liE~~~~   41 (413)
                      ..+|+|||+|-.++=+|..|.+.                    | .+|.++.++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            36899999999999999999873                    4 48999988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.59  E-value=0.59  Score=36.73  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccCCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFDFL   42 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~~~   42 (413)
                      ...|++.|+|-+|+.+|..|.+.+. ++.++|+....
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            4689999999999999999988876 78999986544

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.55  E-value=0.29  Score=36.32  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             cccEEEECC-CHHHHHHHHHHHHcCC-------cEEEEccc
Q 015088            7 KFDVIVVGA-GIMGSSAAYQLAKRGQ-------KTLLLEQF   39 (413)
Q Consensus         7 ~~dvvIIGa-G~aG~~~A~~L~~~g~-------~V~liE~~   39 (413)
                      ..+|+|||| |..|.++|+.|+..+.       ...++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            468999996 9999999999986532       35555543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.52  E-value=0.34  Score=34.65  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            9 DVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         9 dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      +++|+|.|-.|..++..|.  +..|++||.++.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5999999999999999984  667888987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.26  E-value=0.59  Score=39.76  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=30.5

Q ss_pred             ccEEEEC-CCHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..|+|.| +|..|..++..|.++|++|..+++...
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            5799998 689999999999999999999998643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.15  E-value=0.6  Score=36.77  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             cccEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEcccCC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLA--------------------KRGQ-KTLLLEQFDF   41 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~--------------------~~g~-~V~liE~~~~   41 (413)
                      ..+|+|||+|-+++=+|..|+                    +.|. +|.++-|+..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            358999999999999998887                    4454 6899988644

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=83.06  E-value=0.78  Score=34.70  Aligned_cols=24  Identities=25%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             CcccEEEECC-CHHHHHHHHHHHHc
Q 015088            6 EKFDVIVVGA-GIMGSSAAYQLAKR   29 (413)
Q Consensus         6 ~~~dvvIIGa-G~aG~~~A~~L~~~   29 (413)
                      +...|+|+|| |..|.++|+.|++.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcC
Confidence            3468999996 99999999999975

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.01  E-value=0.6  Score=37.27  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=26.8

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088           10 VIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus        10 vvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ++|-|| +-.|.++|..|+++|.+|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            455565 67899999999999999999998754

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.69  E-value=0.62  Score=34.96  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=26.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      -.|+|+|+ |..|+.++..+...|. +|++++.+
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccc
Confidence            46999994 9999999988888884 88888865

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.50  E-value=2.8  Score=37.07  Aligned_cols=43  Identities=30%  Similarity=0.461  Sum_probs=38.4

Q ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCcEEEEcccCCCCCCCcc
Q 015088            6 EKFDVIVVGAGIMGSSAAYQLAKRGQKTLLLEQFDFLHHRGSS   48 (413)
Q Consensus         6 ~~~dvvIIGaG~aG~~~A~~L~~~g~~V~liE~~~~~gg~~~s   48 (413)
                      ..+||||+|-|+.=+.+|..|++.|++|+=||++..-||.-+|
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS   47 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS   47 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence            5799999999999999999999999999999999887664443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.61  Score=37.51  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=25.6

Q ss_pred             EEEECCCH-HHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVGAGI-MGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGaG~-aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ++|.||+- .|..+|.+|+++|.+|++.+++.
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44446654 89999999999999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.71  E-value=0.7  Score=36.88  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             ccEEEECC-CHHHHHHHHHHHHcCCcEEEEcccCC
Q 015088            8 FDVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFDF   41 (413)
Q Consensus         8 ~dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~~   41 (413)
                      ..|+|.|| |-.|.++|..|+++|.+|.++++...
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            35888887 56899999999999999999987643

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.54  E-value=0.47  Score=43.06  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=30.7

Q ss_pred             cccEEEECCCHHHHHHHHHHHHcCC-cEEEEcccC
Q 015088            7 KFDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQFD   40 (413)
Q Consensus         7 ~~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~~   40 (413)
                      ...|+|||+|..|+.+|..|+..|. +++|+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            4689999999999999999999997 899999764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.44  E-value=0.61  Score=38.17  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=28.2

Q ss_pred             ccEEEECC-C--HHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGA-G--IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGa-G--~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ..++|.|| |  -.|.++|..|+++|.+|++.+++.
T Consensus         6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45888886 3  489999999999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.42  E-value=0.76  Score=34.53  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             ccEEEECCCHHHHHHHHHHHHcCC-cEEEEccc
Q 015088            8 FDVIVVGAGIMGSSAAYQLAKRGQ-KTLLLEQF   39 (413)
Q Consensus         8 ~dvvIIGaG~aG~~~A~~L~~~g~-~V~liE~~   39 (413)
                      -.|+|+|+|..|+.++..+...|. .|++++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~   66 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK   66 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccch
Confidence            469999999999999988887776 55666664

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=81.27  E-value=1  Score=37.14  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=26.7

Q ss_pred             cEEEE--CCCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVV--GAGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvII--GaG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +++||  |+|-.|.++|..|+++|.+|++++++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44444  478899999999999999999999864

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.05  E-value=0.76  Score=38.39  Aligned_cols=32  Identities=25%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             cEEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088            9 DVIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         9 dvvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .|+|.|| |..|..++.+|.++|++|..+++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4788876 9999999999999999999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.01  E-value=0.52  Score=38.22  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=27.0

Q ss_pred             ccEEEECCC---HHHHHHHHHHHHcCCcEEEEcccC
Q 015088            8 FDVIVVGAG---IMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus         8 ~dvvIIGaG---~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      .-++|.||+   -.|.++|.+|+++|.+|++.++..
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            457888863   379999999999999999887753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.51  E-value=0.77  Score=36.90  Aligned_cols=31  Identities=23%  Similarity=0.436  Sum_probs=25.7

Q ss_pred             EEEECC-CHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVGA-GIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIGa-G~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      ++|.|| +-.|.++|.+|+++|++|++++++.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            455555 4589999999999999999999865

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.37  E-value=0.58  Score=37.02  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             cccEEEEC-CCHHHHHHHHHHHHcCCcEEEEc
Q 015088            7 KFDVIVVG-AGIMGSSAAYQLAKRGQKTLLLE   37 (413)
Q Consensus         7 ~~dvvIIG-aG~aG~~~A~~L~~~g~~V~liE   37 (413)
                      ...|+|.| +|..|..++..|.++|++|.++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            35799999 59999999999999998877665

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=80.24  E-value=0.99  Score=36.56  Aligned_cols=31  Identities=35%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             EEEE-C-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVV-G-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvII-G-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      +++| | ++-.|.++|..|+++|.+|++.+++.
T Consensus         6 ~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5555 4 45589999999999999999999864

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=0.81  Score=39.07  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=26.8

Q ss_pred             EEEEC-CCHHHHHHHHHHHHcCCcEEEEcccC
Q 015088           10 VIVVG-AGIMGSSAAYQLAKRGQKTLLLEQFD   40 (413)
Q Consensus        10 vvIIG-aG~aG~~~A~~L~~~g~~V~liE~~~   40 (413)
                      |+|.| +|..|..++.+|.++|++|+.+++..
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            55778 89999999999999999999999853