Citrus Sinensis ID: 015089

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
cccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEEccEEEEEEccccccccccccccc
ccEEccHHHHHcHHHHHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEccccccccccccccc
MAYMSMGEAHRRITDYLNRfsdavssqdVVSLKQLLsfssnspsllsLADSLNVFQDANRlikqsdnyspfaditvplfRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRelasngkspeKLKAAGSFLMKVFGVLAgkgskrvgALYLTCQLFKIYFKLGTVHLCRSVIRSIETarifdfeefpkrdkvTYMYYTGRLevfnenfpaadQKLSYALINCNPQSEANIRMILKYLIPVklsigilpkdwllekynlVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQkqkdpskahQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLskqdpfpklngkpvns
maymsmgeAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLikqsdnyspFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADrelasngkspekLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSietarifdfeefpkrdkVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQkqkdpskahqmkLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVvlskqdpfpklngkpvns
MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQllsfssnspsllsladslNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDlrllrhaleeheDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
************ITDYLNRFSDAV****VVSLKQLL********LLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAE*****************AAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQ*****AHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL****************
********AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS*********************DNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADREL***********AAGSFLMKVFG*****GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIE*********FPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKL**K****
********AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQK********QMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPK********
*AYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKL*******
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MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
Q5JVF3399 PCI domain-containing pro yes no 0.927 0.959 0.364 2e-68
Q5FWP8399 PCI domain-containing pro N/A no 0.932 0.964 0.356 2e-67
Q8BFV2399 PCI domain-containing pro yes no 0.927 0.959 0.357 8e-65
Q2TBN6408 PCI domain-containing pro yes no 0.941 0.953 0.350 2e-62
Q5U3P0399 PCI domain-containing pro yes no 0.934 0.967 0.326 5e-58
Q9VTL1395 PCI domain-containing pro yes no 0.743 0.777 0.349 1e-52
Q54PX7430 PCI domain-containing pro yes no 0.794 0.762 0.324 9e-49
P0CR48403 Protein CSN12 homolog OS= yes no 0.924 0.947 0.294 1e-42
P0CR49403 Protein CSN12 homolog OS= N/A no 0.924 0.947 0.294 1e-42
Q95QU0413 PCI domain-containing pro yes no 0.704 0.704 0.352 4e-42
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2 Back     alignment and function desciption
 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 249/411 (60%), Gaps = 28/411 (6%)

Query: 9   AHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNY 68
           AH  I  YL +  +A+ S+D  S  +L+SF    P + +    +   ++  + + +    
Sbjct: 2   AHITINQYLQQVYEAIDSRDGASCAELVSF--KHPHVANPRLQMASPEEKCQQVLEP--- 56

Query: 69  SPFADITVPLFRSLQHYRTGN--LVDAYLAFEKSANAFIQEFR-NWESAWALEALYVIAY 125
            P+ ++     R    Y  GN   ++AY        +F++ F+ + E  WAL  +Y +A 
Sbjct: 57  -PYDEMFAAHLRCT--YAVGNHDFIEAYKCQTVIVQSFLRAFQAHKEENWALPVMYAVAL 113

Query: 126 EIRVLAERADRELASNGKSP--EKLKAAGSFLMKVFGVLAG------KGSKRVGALYLTC 177
           ++RV A  AD++L   GKS   + L+ A   LM  F V A       + SK+ G L+L  
Sbjct: 114 DLRVFANNADQQLVKKGKSKVGDMLEKAAELLMSCFRVCASDTRAGIEDSKKWGMLFLVN 173

Query: 178 QLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQ 237
           QLFKIYFK+  +HLC+ +IR+I+++ + D  ++    +VTY YY GR  +F+ +F  A++
Sbjct: 174 QLFKIYFKINKLHLCKPLIRAIDSSNLKD--DYSTAQRVTYKYYVGRKAMFDSDFKQAEE 231

Query: 238 KLSYALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDL 297
            LS+A  +C+  S+ N RMIL YL+PVK+ +G +P   LL+KY+L++++ + +A+  G+L
Sbjct: 232 YLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNL 291

Query: 298 RLLRHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVK 357
            LL  AL +HE  F+R G++L+LEKL++  Y+ LFKK+Y++       K HQ+ LD  + 
Sbjct: 292 LLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSLDAFLV 345

Query: 358 ALKWLEM-DMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLN 407
           ALK++++ D+D+DEV+CI+A LI+   VKGY +H+ + +V+SKQ+PFP L+
Sbjct: 346 ALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLS 396
Required for B-cell survival through the regulation of the expression of cell-cycle checkpoint MAD2L1 protein during B cell differentiation.
Homo sapiens (taxid: 9606)
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster GN=PCID2 PE=1 SV=2 Back     alignment and function description
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=pcid2 PE=3 SV=1 Back     alignment and function description
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3 SV=1 Back     alignment and function description
>sp|P0CR49|CSN12_CRYNB Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CSN12 PE=3 SV=1 Back     alignment and function description
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans GN=C27F2.10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
225444936413 PREDICTED: PCI domain-containing protein 1.0 1.0 0.874 0.0
224088756413 predicted protein [Populus trichocarpa] 1.0 1.0 0.881 0.0
255546087412 PCI domain-containing protein, putative 0.995 0.997 0.885 0.0
356561961413 PREDICTED: PCI domain-containing protein 1.0 1.0 0.861 0.0
356547787410 PREDICTED: PCI domain-containing protein 0.992 1.0 0.868 0.0
449446588413 PREDICTED: PCI domain-containing protein 1.0 1.0 0.837 0.0
297832206414 hypothetical protein ARALYDRAFT_480516 [ 1.0 0.997 0.821 0.0
30680717413 proteasome-like protein [Arabidopsis tha 1.0 1.0 0.811 0.0
148906436414 unknown [Picea sitchensis] 0.992 0.990 0.729 1e-176
212720664409 uncharacterized protein LOC100193209 [Ze 0.985 0.995 0.707 1e-173
>gi|225444936|ref|XP_002282302.1| PREDICTED: PCI domain-containing protein 2 [Vitis vinifera] gi|297738675|emb|CBI27920.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/413 (87%), Positives = 392/413 (94%)

Query: 1   MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANR 60
           MAY+SMGEAHRRIT+YLNRFSDAV +QD  SLKQLLS SSNSP LLSLAD+LN+F D+NR
Sbjct: 1   MAYLSMGEAHRRITEYLNRFSDAVLTQDGSSLKQLLSISSNSPLLLSLADALNLFHDSNR 60

Query: 61  LIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEAL 120
           L+KQSD +S  ++I  PLFRS+Q++R GNL+D+Y AFEK+ANAFIQEFRNWESAWALEAL
Sbjct: 61  LLKQSDRFSQISEIVSPLFRSIQNFRLGNLLDSYNAFEKAANAFIQEFRNWESAWALEAL 120

Query: 121 YVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLF 180
           YVIAYEIRVLAERADRELAS GK+PEKLK AGSFLMKVFGVLAGKG KRVGALY+TCQLF
Sbjct: 121 YVIAYEIRVLAERADRELASVGKTPEKLKGAGSFLMKVFGVLAGKGPKRVGALYVTCQLF 180

Query: 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLS 240
           KIYFKLGTVHLCRSVIRSIETARIFDFEEFP RDKVTYMYYTGRLEVFNENFPAADQKLS
Sbjct: 181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPIRDKVTYMYYTGRLEVFNENFPAADQKLS 240

Query: 241 YALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLL 300
           YAL++CNP  EANIRMILKYLIPVKLSIGILPK+WLLEKYNL+EYSNIVQAL+RGDLRLL
Sbjct: 241 YALMHCNPHREANIRMILKYLIPVKLSIGILPKNWLLEKYNLIEYSNIVQALKRGDLRLL 300

Query: 301 RHALEEHEDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALK 360
           RHAL+EHED+FLRSGVYLVLEKLELQVYQRL KKIY IQKQKDPSKAHQ+KL+VIVKALK
Sbjct: 301 RHALQEHEDRFLRSGVYLVLEKLELQVYQRLVKKIYFIQKQKDPSKAHQLKLEVIVKALK 360

Query: 361 WLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 413
           WLEMDMDVDEVECI++ILI+KNL+KGYFAHKSKVVVLSKQDPFPKLNGKPVNS
Sbjct: 361 WLEMDMDVDEVECIMSILIYKNLMKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224088756|ref|XP_002308527.1| predicted protein [Populus trichocarpa] gi|222854503|gb|EEE92050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546087|ref|XP_002514103.1| PCI domain-containing protein, putative [Ricinus communis] gi|223546559|gb|EEF48057.1| PCI domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356561961|ref|XP_003549244.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356547787|ref|XP_003542290.1| PREDICTED: PCI domain-containing protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446588|ref|XP_004141053.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] gi|449488021|ref|XP_004157917.1| PREDICTED: PCI domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297832206|ref|XP_002883985.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] gi|297329825|gb|EFH60244.1| hypothetical protein ARALYDRAFT_480516 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30680717|ref|NP_179546.2| proteasome-like protein [Arabidopsis thaliana] gi|26452802|dbj|BAC43481.1| unknown protein [Arabidopsis thaliana] gi|330251801|gb|AEC06895.1| proteasome-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|148906436|gb|ABR16371.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|212720664|ref|NP_001131834.1| uncharacterized protein LOC100193209 [Zea mays] gi|194692672|gb|ACF80420.1| unknown [Zea mays] gi|414885294|tpg|DAA61308.1| TPA: hypothetical protein ZEAMMB73_565062 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
TAIR|locus:2050414413 EER5 "ENHANCED ETHYLENE RESPON 1.0 1.0 0.745 1.3e-162
UNIPROTKB|Q5JVF3399 PCID2 "PCI domain-containing p 0.762 0.789 0.382 3.7e-62
MGI|MGI:2443003399 Pcid2 "PCI domain containing 2 0.762 0.789 0.376 1.3e-61
RGD|1307041400 Pcid2 "PCI domain containing 2 0.762 0.787 0.383 1.6e-61
UNIPROTKB|F1NEE3403 PCID2 "Uncharacterized protein 0.762 0.781 0.374 3.3e-61
UNIPROTKB|F1RN42405 PCID2 "Uncharacterized protein 0.762 0.777 0.352 2.9e-58
UNIPROTKB|F1MWG9408 PCID2 "PCI domain-containing p 0.941 0.953 0.323 2.2e-57
UNIPROTKB|Q2TBN6408 PCID2 "PCI domain-containing p 0.941 0.953 0.323 2.2e-57
ZFIN|ZDB-GENE-041114-79399 pcid2 "PCI domain containing 2 0.799 0.827 0.333 3.3e-55
FB|FBgn0036184395 PCID2 "PCI domain-containing p 0.743 0.777 0.346 2.5e-49
TAIR|locus:2050414 EER5 "ENHANCED ETHYLENE RESPONSE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1583 (562.3 bits), Expect = 1.3e-162, P = 1.3e-162
 Identities = 308/413 (74%), Positives = 346/413 (83%)

Query:     1 MAYMSMGEAHRRITDYLNRFSDAVSSQDVVSLKQXXXXXXXXXXXXXXXXXXNVFQDANR 60
             MAY+SMGEAHRRIT+YLNRF DAVS QD  +L +                  NVFQD++ 
Sbjct:     1 MAYVSMGEAHRRITEYLNRFCDAVSYQDSSTLCRLLSFSSNSPPLLSLADALNVFQDSSS 60

Query:    61 LIKQSDNYSPFADITVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEAL 120
             LI+QSD +S + +I   +FRSLQ YR GNLV+AYLAF+K ANAF+QEFRNWESAWALEAL
Sbjct:    61 LIRQSDRFSEYGEILAHVFRSLQSYRVGNLVEAYLAFDKFANAFVQEFRNWESAWALEAL 120

Query:   121 YVIAYEIRVLAERADRELASNGKSPEKLKAAGSFLMKVFGVLAGKGSKRVGALYLTCQLF 180
             YV+ YEIRVLAE+AD++L SNGKSPEKLKAAGS LMKVFGVLAGKG KRVGALY+TCQLF
Sbjct:   121 YVVCYEIRVLAEKADKDLTSNGKSPEKLKAAGSLLMKVFGVLAGKGPKRVGALYVTCQLF 180

Query:   181 KIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLS 240
             K YFKLGTV+LCRSVIRSIETARIFDFEEFP+RDKVTYMYYTGRLEVFNENFPAAD KLS
Sbjct:   181 KTYFKLGTVNLCRSVIRSIETARIFDFEEFPRRDKVTYMYYTGRLEVFNENFPAADTKLS 240

Query:   241 YALINCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDXXXX 300
             YAL NCNP+ E NIRMILKYL+PVKLS+GI+PKD LL  YNL EY+ IVQALR+GD    
Sbjct:   241 YALQNCNPKRERNIRMILKYLVPVKLSLGIIPKDELLRNYNLHEYTKIVQALRKGDLRLL 300

Query:   301 XXXXXXXXDQFLRSGVYLVLEKLELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALK 360
                     D+FLRSGVYLVLEKLELQVYQRL KKIYI QK  DP++AHQ+KL+ I KAL+
Sbjct:   301 RHALQEHEDRFLRSGVYLVLEKLELQVYQRLMKKIYINQKLSDPARAHQLKLEGIAKALR 360

Query:   361 WLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDPFPKLNGKPVNS 413
             WL+MDMD+DEVECI+ ILI+KNLVKGY AHKSKVVVLSKQDPFPKLNGKPV+S
Sbjct:   361 WLDMDMDLDEVECIMTILIYKNLVKGYLAHKSKVVVLSKQDPFPKLNGKPVSS 413
GO:0005739 "mitochondrion" evidence=ISM
GO:0009723 "response to ethylene stimulus" evidence=IMP
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IPI
GO:0048364 "root development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP
GO:0000303 "response to superoxide" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009743 "response to carbohydrate stimulus" evidence=RCA
GO:0009751 "response to salicylic acid stimulus" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
UNIPROTKB|Q5JVF3 PCID2 "PCI domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443003 Pcid2 "PCI domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307041 Pcid2 "PCI domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEE3 PCID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN42 PCID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWG9 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TBN6 PCID2 "PCI domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-79 pcid2 "PCI domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0036184 PCID2 "PCI domain-containing protein 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JVF3PCID2_HUMANNo assigned EC number0.36490.92730.9598yesno
Q5U3P0PCID2_DANRENo assigned EC number0.32680.93460.9674yesno
Q2TBN6PCID2_BOVINNo assigned EC number0.35020.94180.9534yesno
Q8BFV2PCID2_MOUSENo assigned EC number0.35760.92730.9598yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
COG5600413 COG5600, COG5600, Transcription-associated recombi 1e-38
pfam01399100 pfam01399, PCI, PCI domain 3e-10
>gnl|CDD|227887 COG5600, COG5600, Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  143 bits (362), Expect = 1e-38
 Identities = 116/429 (27%), Positives = 177/429 (41%), Gaps = 57/429 (13%)

Query: 15  DYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYS---PF 71
           D  N   DAV+  +   L + LS +            L      +  I      +   PF
Sbjct: 2   DMANTLLDAVAHGNSSHLTKCLSQNG------REIAILGKVLTGDSKIDAKLKETIQRPF 55

Query: 72  ADI----TVPLFRSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYEI 127
                  T+ L + L   R     D     ++S+   +QE          E  Y  A  +
Sbjct: 56  GRNDTAVTLVLQKFLNLGR-----DKDPWSKRSSEL-LQEL---YKNLTAELSYSSAPHL 106

Query: 128 RVLAERADRELAS----------------NGKSPEK---LKAAGSFLMKVFGVL------ 162
            VL + A R L                    KS      L      L ++F  +      
Sbjct: 107 EVLVKNAVRMLGREIWNLTVVKKQLYGLLELKSELNQDNLSKISRLLTRMFNSILNDRSP 166

Query: 163 AGKGSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYT 222
           A   SK+VG  Y+   LF+IY +LG   LC + +++ +   + D  E+ K   V + YY 
Sbjct: 167 ALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYL 226

Query: 223 GRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLSIG-ILPKDWLLEKYN 281
           G   + NENF  A   L+ A + C      N + IL Y IP  L +    P   LLE++ 
Sbjct: 227 GIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFK 286

Query: 282 LVE-YSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVL-EKLELQVYQRLFKKIYIIQ 339
               YS +V+A+R G++     AL  +E +F + G+YL L     L  ++ LF+KI+ + 
Sbjct: 287 RCSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLAHYPLVCFRNLFRKIWRLH 346

Query: 340 KQKDPSKAHQMKLDV--IVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVL 397
                 K  ++ L +  IV  L  ++      EVECI+  LI   L++GY +H  + VV 
Sbjct: 347 G-----KQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTVVF 401

Query: 398 SKQDPFPKL 406
           SK+DPFP  
Sbjct: 402 SKKDPFPVS 410

Length = 413
>gnl|CDD|216479 pfam01399, PCI, PCI domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
KOG2688394 consensus Transcription-associated recombination p 100.0
COG5600413 Transcription-associated recombination protein [DN 100.0
KOG2581493 consensus 26S proteasome regulatory complex, subun 100.0
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 99.89
PF01399105 PCI: PCI domain; InterPro: IPR000717 A homology do 99.62
KOG2908380 consensus 26S proteasome regulatory complex, subun 98.91
KOG1463411 consensus 26S proteasome regulatory complex, subun 98.88
COG5159421 RPN6 26S proteasome regulatory complex component [ 98.44
KOG2582422 consensus COP9 signalosome, subunit CSN3 [Posttran 98.38
smart0008888 PINT motif in proteasome subunits, Int-6, Nip-1 an 98.04
smart0075388 PAM PCI/PINT associated module. 98.04
KOG2753378 consensus Uncharacterized conserved protein, conta 97.47
KOG1497399 consensus COP9 signalosome, subunit CSN4 [Posttran 97.35
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 96.96
KOG0687393 consensus 26S proteasome regulatory complex, subun 96.07
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 95.73
COG5187412 RPN7 26S proteasome regulatory complex component, 95.49
KOG2758432 consensus Translation initiation factor 3, subunit 95.34
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 94.57
KOG0686466 consensus COP9 signalosome, subunit CSN1 [Posttran 94.51
PF1337173 TPR_9: Tetratricopeptide repeat 94.44
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 94.31
KOG1498439 consensus 26S proteasome regulatory complex, subun 94.31
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 92.49
KOG1076843 consensus Translation initiation factor 3, subunit 92.05
TIGR02552135 LcrH_SycD type III secretion low calcium response 90.63
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 89.98
cd00189100 TPR Tetratricopeptide repeat domain; typically con 89.08
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 88.52
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 88.11
PRK15359144 type III secretion system chaperone protein SscB; 88.04
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 88.01
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 87.74
KOG2072 988 consensus Translation initiation factor 3, subunit 87.48
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 87.35
cd00189100 TPR Tetratricopeptide repeat domain; typically con 86.56
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 85.18
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 83.85
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 82.91
PF1342844 TPR_14: Tetratricopeptide repeat 81.73
COG5071439 RPN5 26S proteasome regulatory complex component [ 80.62
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 80.06
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-72  Score=553.42  Aligned_cols=382  Identities=36%  Similarity=0.567  Sum_probs=341.9

Q ss_pred             HHHHHHHHHHHhcCChHHHhccccccCCCcchhhHHhhhhhhhhHHHHhhhcCCCCChHHHHHHHHHHhhhcc-CCCHHH
Q 015089           14 TDYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDANRLIKQSDNYSPFADITVPLFRSLQHYR-TGNLVD   92 (413)
Q Consensus        14 ~~~l~~v~~a~~~~dg~~la~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evv~~~l~~~~~~~-~~~~~~   92 (413)
                      ++|++++..++...||+.++...+..+.+  .   ....-.+.+.+..+++... .||++++..|+++..... +.+...
T Consensus         1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~--~---~~~~~~~d~~~~~l~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~s   74 (394)
T KOG2688|consen    1 NDYFSQLLSAVARLDGELLAVQLSRRDGH--V---QTSRTVFDAEEERLQQFIG-KPFDTIVGLHLRVLLRVAYPCDAAS   74 (394)
T ss_pred             CchHHHHHHHHHhccHHHHHHhcCCCcch--h---hcchhhcccHHHHHHhccC-CCcchhHhHHHHHHhhhccCcchhh
Confidence            47999999999999999999999998877  2   2222223355667777655 799999999999877754 456677


Q ss_pred             HHHHHHHHHH-HHHHHHhcc-CccccHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHHhhhCC----
Q 015089           93 AYLAFEKSAN-AFIQEFRNW-ESAWALEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKVFGVLAGK----  165 (413)
Q Consensus        93 a~~~~~~~~~-~l~~~~~~~-~~~W~lp~L~~~~~~l~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~f~~~~~d----  165 (413)
                      ||..+. +.+ ...+.++.. +++|++|+++++|.+++.++..++....+ ....++.+|.+++.++++|+.|.+|    
T Consensus        75 a~~~~~-~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~~~s~~~~~le~~s~~i~~~f~~cl~d~~~~  153 (394)
T KOG2688|consen   75 AFSQQK-LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLSFSSLPNQLLEAASRTISRLFSSCLSDRRAD  153 (394)
T ss_pred             hhhhHH-HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcCcccCchHHHHHHHHHHHHHHHHHhCccccc
Confidence            777776 333 344445443 79999999999999999999999988754 2334678999999999999999999    


Q ss_pred             --CCchhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccCCCCCCCCCccchhhhhhhhHHHhhhhcChHHHHHHHHHHH
Q 015089          166 --GSKRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETARIFDFEEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYAL  243 (413)
Q Consensus       166 --~~Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~~p~~~~~p~~~~v~y~YY~Gr~~~~~~~~~~A~~~L~~A~  243 (413)
                        ++|++|+++++|++|+|||+++++++|++++|++++. .+..+.++.+|+|+|+||+|+++|++.||.+|+.+|.+||
T Consensus       154 ~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~-~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af  232 (394)
T KOG2688|consen  154 LEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQS-GSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF  232 (394)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhcc-ccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence              3899999999999999999999999999999999987 3677889999999999999999999999999999999999


Q ss_pred             HhcCccchHHHHHHHHHHHHHHhhcCCCCChhhhccccccchHHHHHHHHhCCHHHHHHHHHHcHHHHHHhcHHHHHHHh
Q 015089          244 INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLEKYNLVEYSNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVLEKL  323 (413)
Q Consensus       244 ~~c~~~~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~~~l~~y~~L~~air~Gdl~~f~~~l~~~~~~f~k~glyllle~l  323 (413)
                      ++||.....|+++|++|+||+.|++|++|+..++++|++..|.++++|||.||+..|+.++++||.+|+++|+|++|+++
T Consensus       233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l  312 (394)
T KOG2688|consen  233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL  312 (394)
T ss_pred             HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcc-CCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCCC
Q 015089          324 ELQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLE-MDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQDP  402 (413)
Q Consensus       324 r~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~-~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~p  402 (413)
                      |.+||||||||||.++     ++++++|++.|..|+++++ .+.|.||+||||||||++|+|||||||+++++|+||++|
T Consensus       313 ~lv~yrnL~kkv~~~~-----~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~p  387 (394)
T KOG2688|consen  313 PLVVYRNLFKKVIQLW-----GKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDP  387 (394)
T ss_pred             hHHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCC
Confidence            9999999999999998     4789999999999999988 458999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 015089          403 FPKLNG  408 (413)
Q Consensus       403 FP~~~~  408 (413)
                      ||.++.
T Consensus       388 fp~~v~  393 (394)
T KOG2688|consen  388 FPHLVL  393 (394)
T ss_pred             CCCCCC
Confidence            999864

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins Back     alignment and domain information
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 Back     alignment and domain information
>smart00753 PAM PCI/PINT associated module Back     alignment and domain information
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only] Back     alignment and domain information
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
3t5x_A203 Pcid2:dss1 Structure Length = 203 3e-40
3t5v_B455 Sac3:thp1:sem1 Complex Length = 455 1e-04
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure Length = 203 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (410), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 134/201 (66%), Gaps = 7/201 (3%)
Query: 208 EEFPKRDKVTYMYYTGRLEVFNENFPAADQKLSYALINCNPQSEANIRMILKYLIPVKLS 267
           +++    +VTY YY GR  +F+ +F  A++ LS+A  +C+  S+ N RMIL YL+PVK+ 
Sbjct: 6   DDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKML 65
Query: 268 IGILPKDWLLEKYNLVEYSNIVQALRRGDXXXXXXXXXXXXDQFLRSGVYLVLEKLELQV 327
           +G +P   LL+KY+L++++ + +A+  G+              F+R G++L+LEKL++  
Sbjct: 66  LGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIIT 125
Query: 328 YQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEM-DMDVDEVECIVAILIHKNLVKG 386
           Y+ LFKK+Y++       K HQ+ LD  + ALK++++ D+D+DEV+CI+A LI+   VKG
Sbjct: 126 YRNLFKKVYLL------LKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKG 179
Query: 387 YFAHKSKVVVLSKQDPFPKLN 407
           Y +H+ + +V+SKQ+PFP L+
Sbjct: 180 YISHQHQKLVVSKQNPFPPLS 200
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex Length = 455 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 4e-88
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 2e-66
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 455 Back     alignment and structure
 Score =  273 bits (700), Expect = 4e-88
 Identities = 78/438 (17%), Positives = 154/438 (35%), Gaps = 50/438 (11%)

Query: 15  DYLNRFSDAVSSQDVVSLKQLLSFSSNSPSLLSLADSLNVFQDAN--RLIKQS---DNYS 69
           D  N+  D ++  +   L   LS   N   +  L   L  F D      ++Q     N +
Sbjct: 2   DMANQLLDELAHGNFSHLTLNLSQ--NGREIAILQKQLTGFDDKQLETFVEQHPAMPNDT 59

Query: 70  PFADITVPLF---RSLQHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWALEALYVIAYE 126
            F  +        R +  +   +  D    F +     +           +         
Sbjct: 60  RFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEF 119

Query: 127 IRVLAERADREL-ASNGKSPEKLKAAGSFLMKVFGVL---------AGKGSKRVGALYLT 176
           I  LA + D      + +S + L    S L ++F  +              K+   LYL 
Sbjct: 120 IINLAGKLDSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLV 179

Query: 177 CQLFKIYFKLGTVHLCRSVIRSIETARIF-DFEEFPKRDKVTYMYYTGRLEVFNENFPAA 235
            +L  IYF++ +  LC ++ ++ +   +   F E+    ++ Y Y  GR  + N     A
Sbjct: 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNA 239

Query: 236 DQKLSYAL------INCNPQSEANIRMILKYLIPVKLSIGILPKDWLLE----KYNLVEY 285
             + + A          N     N   IL Y+IP  L +G + K   L     +  +  +
Sbjct: 240 FVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNW 299

Query: 286 SNIVQALRRGDLRLLRHALEEHEDQFLRSGVYLVL-EKLELQVYQRLFKKIYIIQKQKDP 344
           S + + +R G+++ +   L ++E       + +VL EKL +  Y+ L K +         
Sbjct: 300 SVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTT--E 357

Query: 345 SKAHQMKLDVIVKALK----------------WLEMDMDVDEVECIVAILIHKNLVKGYF 388
              +++   +I + L+                          VE ++  LI+  L++   
Sbjct: 358 WGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANC 417

Query: 389 AHKSKVVVLSKQDPFPKL 406
             + ++ V+ K     ++
Sbjct: 418 FPQLQLCVVKKTTMIQEI 435
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
3t5v_B455 Nuclear mRNA export protein THP1; PCI, mRNA nuclea 100.0
3t5x_A203 PCI domain-containing protein 2; PCI, mRNA nuclear 100.0
4b4t_S523 RPN3, 26S proteasome regulatory subunit RPN3; hydr 100.0
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 99.84
4b4t_O393 26S proteasome regulatory subunit RPN9; hydrolase, 99.66
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 99.59
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 99.47
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 99.41
4b0z_A229 RPN12, 26S proteasome regulatory subunit RPN12; pr 98.68
3chm_A169 COP9 signalosome complex subunit 7; heat/ARM repea 98.1
1ufm_A84 COP9 complex subunit 4; helix-turn-helix, structur 97.95
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 95.3
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 95.02
3q15_A378 PSP28, response regulator aspartate phosphatase H; 94.66
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 94.58
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 94.18
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 93.58
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 93.52
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 92.85
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 92.78
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 92.76
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 92.57
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 92.52
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 92.04
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 91.67
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 91.52
3u3w_A293 Transcriptional activator PLCR protein; ternary co 91.48
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 91.48
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 91.24
3u3w_A293 Transcriptional activator PLCR protein; ternary co 91.21
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 91.11
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 91.11
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 91.09
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 90.93
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 90.85
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 90.81
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 90.58
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 90.41
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 90.39
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 90.37
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 90.12
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 90.08
3q15_A378 PSP28, response regulator aspartate phosphatase H; 89.92
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 89.86
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 89.75
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 89.62
3k9i_A117 BH0479 protein; putative protein binding protein, 89.47
3q49_B137 STIP1 homology and U box-containing protein 1; E3 89.36
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 89.28
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 89.2
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 89.2
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 89.12
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 88.79
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 88.78
4i17_A228 Hypothetical protein; TPR repeats protein, structu 88.69
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 88.68
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 88.63
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 88.3
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 88.18
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 88.03
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 87.92
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 87.87
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 87.8
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 87.62
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 87.49
2l6j_A111 TPR repeat-containing protein associated with HSP; 87.45
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 87.24
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 87.19
2kat_A115 Uncharacterized protein; NESG, structure, structur 87.15
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 87.11
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 87.06
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 86.96
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 86.71
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 86.07
4eqf_A365 PEX5-related protein; accessory protein, tetratric 85.87
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 85.57
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 84.57
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 84.5
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 84.39
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 84.35
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 84.27
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 84.25
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 84.14
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 83.96
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 83.72
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 83.69
3q49_B137 STIP1 homology and U box-containing protein 1; E3 83.48
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 83.45
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 83.45
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 83.38
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 83.37
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 83.33
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 83.04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 83.03
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 82.9
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 82.73
3qww_A433 SET and MYND domain-containing protein 2; methyltr 82.61
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 82.49
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 82.25
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 82.15
3u4t_A272 TPR repeat-containing protein; structural genomics 81.94
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 81.81
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 81.75
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 81.6
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 81.3
4eqf_A365 PEX5-related protein; accessory protein, tetratric 81.08
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 81.07
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 80.98
4i17_A228 Hypothetical protein; TPR repeats protein, structu 80.93
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 80.93
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 80.55
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 80.41
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 80.12
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5.9e-82  Score=647.34  Aligned_cols=387  Identities=18%  Similarity=0.254  Sum_probs=346.2

Q ss_pred             hHHHHHHHHHHHHHHhcCChHHHhccccccCCCcc--hhhHHhhhh--hhhhHHHHhhhc---CCCCChHHHHHHHHHHh
Q 015089           10 HRRITDYLNRFSDAVSSQDVVSLKQLLSFSSNSPS--LLSLADSLN--VFQDANRLIKQS---DNYSPFADITVPLFRSL   82 (413)
Q Consensus        10 ~~~l~~~l~~v~~a~~~~dg~~la~lls~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~evv~~~l~~~   82 (413)
                      |+.+++|+.+|.+      |.  ..+|+++|+.|.  ...+++.+.  .+.+.++.|+..   .+|++|.+++.+|++++
T Consensus         1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~   72 (455)
T 3t5v_B            1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA   72 (455)
T ss_dssp             -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence            5678999999998      33  899999998763  344444332  244577777764   57889999999999999


Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHhccCcccc---HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHH
Q 015089           83 QHYRTGNLVDAYLAFEKSANAFIQEFRNWESAWA---LEALYVIAYEIRVLAERADRELAS-NGKSPEKLKAAGSFLMKV  158 (413)
Q Consensus        83 ~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~W~---lp~L~~~~~~l~~la~~~D~~~~~-~~~~~~~le~~a~~l~~~  158 (413)
                      ++++++++.++|+.+.++++.++++|.+.+.+|+   +|+++.++..++.+|.++|++... ...+.++||+||++|+++
T Consensus        73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~~~~~~~~~le~~a~~i~k~  152 (455)
T 3t5v_B           73 RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINLAGKLDSFHLQLHTRSHQFLSHISSILSRL  152 (455)
T ss_dssp             HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCTTHHHHHHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999988778998   888888999999999999998843 334578999999999999


Q ss_pred             HHhhhCCC------C---chhHHHHHHHHHHHHHHhcCChhhHHHHHHHhhccC-CCCCCCCCccchhhhhhhhHHHhhh
Q 015089          159 FGVLAGKG------S---KRVGALYLTCQLFKIYFKLGTVHLCRSVIRSIETAR-IFDFEEFPKRDKVTYMYYTGRLEVF  228 (413)
Q Consensus       159 f~~~~~d~------~---Kk~~~~~l~n~l~kiYfkl~~~~l~~~i~k~i~~~~-~p~~~~~p~~~~v~y~YY~Gr~~~~  228 (413)
                      |+.|++|.      +   ||+|++|++|+|||+|||+|++++|++++|+++++. +|+++.||++|+|||+||+||++++
T Consensus       153 F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~  232 (455)
T 3t5v_B          153 FNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL  232 (455)
T ss_dssp             HHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH
Confidence            99999983      3   999999999999999999999999999999999875 5789999999999999999999999


Q ss_pred             hcChHHHHHHHHHHHHh-cCcc-----chHHHHHHHHHHHHHHhhcCCCCChhhhcc---ccccc-hHHHHHHHHhCCHH
Q 015089          229 NENFPAADQKLSYALIN-CNPQ-----SEANIRMILKYLIPVKLSIGILPKDWLLEK---YNLVE-YSNIVQALRRGDLR  298 (413)
Q Consensus       229 ~~~~~~A~~~L~~A~~~-c~~~-----~~~nk~~IL~yLIpv~Ll~G~~P~~~ll~~---~~l~~-y~~L~~air~Gdl~  298 (413)
                      +++|.+|+++|++||++ ||.+     +.+|+++||+||||++|++|++|++.++++   +.+.+ |.+|++|||+||+.
T Consensus       233 ~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~  312 (455)
T 3t5v_B          233 NSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRYGNIQ  312 (455)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             HccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999 9987     479999999999999999999999999998   35776 99999999999999


Q ss_pred             HHHHHHHHcHHHHHHhcH-HHHHHHhHHHHHHHHHHHH---HHHhhcCCCCCCccccHHHHHHHHhhccCC---------
Q 015089          299 LLRHALEEHEDQFLRSGV-YLVLEKLELQVYQRLFKKI---YIIQKQKDPSKAHQMKLDVIVKALKWLEMD---------  365 (413)
Q Consensus       299 ~f~~~l~~~~~~f~k~gl-yllle~lr~~v~rnL~kkv---~~~~~~~~~~~~~~i~l~~~~~al~~~~~~---------  365 (413)
                      +|+++|++|+++|+++|+ |++++|+|.+|||||+|||   |.+.     .+++|||+++|+.||++++.+         
T Consensus       313 ~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~-----~~~srI~l~~i~~aL~~~~~~~~~~~~~~~  387 (455)
T 3t5v_B          313 GVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTE-----WGQNKLPYSLIERVLQLSIGPTFEDPGAQE  387 (455)
T ss_dssp             HHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTT-----TCCCEEEHHHHHHHHHHHHCCCTTSTTCCC
T ss_pred             HHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCeeeHHHHHHHHhhccCcccccccccc
Confidence            999999999999999999 9999999999999999999   5443     356999999999999986432         


Q ss_pred             -------CCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecC----CCCCCCCCC
Q 015089          366 -------MDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQ----DPFPKLNGK  409 (413)
Q Consensus       366 -------~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~----~pFP~~~~~  409 (413)
                             +|+||||||+|+||++|+|||||+|+++++|+||+    +|||+++++
T Consensus       388 ~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~  442 (455)
T 3t5v_B          388 ITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNER  442 (455)
T ss_dssp             CCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHH
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHH
Confidence                   68999999999999999999999999999999999    999998753
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} Back     alignment and structure
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe} Back     alignment and structure
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Back     alignment and structure
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1ufma_84 COP9 signalosome complex subunit 4, GSN4 {Mouse (M 98.04
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 94.89
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 92.55
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 91.81
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 90.27
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 90.06
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 89.79
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 88.39
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 87.41
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 85.17
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 84.99
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 84.92
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 84.56
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 84.3
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 83.31
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 82.26
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 82.11
d1w3ba_ 388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 82.11
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 80.28
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=4.8e-06  Score=63.58  Aligned_cols=64  Identities=11%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCceeEEeecCCeEEEEecCC
Q 015089          325 LQVYQRLFKKIYIIQKQKDPSKAHQMKLDVIVKALKWLEMDMDVDEVECIVAILIHKNLVKGYFAHKSKVVVLSKQD  401 (413)
Q Consensus       325 ~~v~rnL~kkv~~~~~~~~~~~~~~i~l~~~~~al~~~~~~~d~~evEcila~LI~~G~IkGyIs~~~~~vVlSk~~  401 (413)
                      ..+...=++++...|        ++|+++.+...|.     ++.+++|.++++||.+|.|+|+|++.+++|.+.+.+
T Consensus        14 ~~i~Ehni~~is~~Y--------~~Isl~~la~~l~-----l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e   77 (84)
T d1ufma_          14 RAVIEHNLLSASKLY--------NNITFEELGALLE-----IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE   77 (84)
T ss_dssp             HHHHHHHHHHHHHSC--------SEEEHHHHHHHTT-----SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred             HHHHHHHHHHHHHhh--------ceeeHHHHHHHHC-----CCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCC
Confidence            334444455666666        8999999999997     689999999999999999999999999999987653
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure