Citrus Sinensis ID: 015103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Secondary Structure (PSIPRED)
ccEEEEEcEEEccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEccHHHHHHHHHHHccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHccccEEEEEcccccccccccEEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEcccEEEEEccccccccccccccHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEccEEEcccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEcHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHcHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHcccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHccccEEEEEEEccccEEEEEEEHHHHHHHHHcc
Coil and Loop (DISEMBL)
mykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQALqlgqdanpslgfngqrcqmclrsdpLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Flexible Loop (DISEMBL)
mykfyvdgewrhdenqphvSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMErlanpgvrRLVIVEagskrvegiislsdVFRFLLGV
Low Complexity Region (SEG)
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered region (IsUnstruct)
***FYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL**
Disordered Region (DISOPRED)
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIA*******************************************DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL********GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISEMBL)
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Disordered Region (DISPRO)
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTI********EVDD*******FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.987	0.837	0.747	1e-176
Q09138	330	5'-AMP-activated protein	yes	no	0.709	0.887	0.320	3e-33
P58108	330	5'-AMP-activated protein	yes	no	0.709	0.887	0.320	3e-33
P54619	331	5'-AMP-activated protein	yes	no	0.709	0.885	0.320	3e-33
O54950	330	5'-AMP-activated protein	yes	no	0.709	0.887	0.320	5e-33
P80385	330	5'-AMP-activated protein	yes	no	0.711	0.890	0.312	9e-33
Q8T277	577	5'-AMP-activated protein	yes	no	0.755	0.540	0.292	1e-30
Q91WG5	566	5'-AMP-activated protein	no	no	0.704	0.514	0.301	4e-30
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.704	0.511	0.301	1e-29
Q5R4S0	524	5'-AMP-activated protein	no	no	0.704	0.555	0.298	4e-29

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  618 bits (1593), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 314/420 (74%), Positives = 354/420 (84%), Gaps = 12/420 (2%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G  NM+VDDV +R
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGRSNMDVDDVFLR 129

Query: 60  P-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLY 114
                 E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LY
Sbjct: 130 TADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILY 189

Query: 115 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 174
           EQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  +
Sbjct: 190 EQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHI 249

Query: 175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA 234
           +  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LA
Sbjct: 250 S--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLA 307

Query: 235 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSAL 294
           SLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSAL
Sbjct: 308 SLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSAL 367

Query: 295 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP 354
           ALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P
Sbjct: 368 ALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASP 427

Query: 355 SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
             G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 428 PYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 139 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDENDV-VKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 139 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 139 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 290

Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  142 bits (358), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 166/334 (49%), Gaps = 41/334 (12%)

Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 139 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 135 ASLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FM 188

Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 189 SKSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 239

Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           YS+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ 
Sbjct: 240 YSKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLETIIN 289

Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 290 RLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  141 bits (356), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)

Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 139 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 198
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 199 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 258
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 259 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 318
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240

Query: 319 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 378
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINR 290

Query: 379 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 172/349 (49%), Gaps = 37/349 (10%)

Query: 67  SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 126
           +E  ++  +    +FL  HT Y+++P SGKV  LD  LAVK AF+ L E G+   PLW+ 
Sbjct: 256 TEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNS 315

Query: 127 FKGRFVGVLSALDFI-LILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNG 184
            +  F G+++  DFI ++L       SN   +++  H I   W+    +++++R      
Sbjct: 316 EQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWR----EISVER------ 365

Query: 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 244
              P  L+   P  +L + A  +L  K+  +P++           IL++ + S IL  + 
Sbjct: 366 ---PSSLISTEPETNLYDAASLLLCYKIHRLPVVD----KKDTNSILHILTHSRILAFMM 418

Query: 245 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 304
           + F      L  L  P+ S+ +GT+   +      P         L   L LL +  +S+
Sbjct: 419 KSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP---------LVEVLELLSEKKISA 467

Query: 305 IPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 363
           +PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L         L    ++ 
Sbjct: 468 VPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQI 522

Query: 364 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
             C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  +LL 
Sbjct: 523 YTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  132 bits (332), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 81  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 140
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 141 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 200
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 201 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 320
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 472

Query: 321 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 380
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 473 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSKLETLETIVDRIV 522

Query: 381 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 523 RAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 41/332 (12%)

Query: 81  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 140
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 141 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 200
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 324 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 370

Query: 201 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 371 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 424

Query: 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 320
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 425 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 475

Query: 321 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 380
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 476 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 525

Query: 381 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              V RLV+V EA S  + GIISLSD+ + L+
Sbjct: 526 RAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  129 bits (324), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 162/332 (48%), Gaps = 41/332 (12%)

Query: 81  FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 140
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 141 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 200
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 201 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 260
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 320
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 430

Query: 321 SDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA 380
            D+  LA +K Y  +   ++ + QALQ     + S  F G     C + + L  +++R+ 
Sbjct: 431 FDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNKLEILETIVDRIV 480

Query: 381 NPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              V RLV+  EA S  + GIISLSD+ + L+
Sbjct: 481 RAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.985	0.844	0.775	0.0
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.983	0.831	0.760	1e-179
255542654	540	AMP-activated protein kinase, gamma regu	0.966	0.738	0.769	1e-176
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.987	0.837	0.747	1e-174
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.980	0.845	0.751	1e-174
312281727	487	unnamed protein product [Thellungiella h	0.987	0.837	0.733	1e-170
224123752	475	predicted protein [Populus trichocarpa]	0.987	0.858	0.723	1e-167
224123152	488	predicted protein [Populus trichocarpa]	0.983	0.831	0.704	1e-165
356573006	478	PREDICTED: sucrose nonfermenting 4-like	0.978	0.845	0.700	1e-159
356573008	488	PREDICTED: sucrose nonfermenting 4-like	0.985	0.834	0.693	1e-159

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/415 (77%), Positives = 360/415 (86%), Gaps = 8/415 (1%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVD-DVVM 58
           YKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G  NM++D D   
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGGSNMDLDNDPFP 130

Query: 59  RPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGL 118
           R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VKQAFH LYEQG+
Sbjct: 131 RGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVKQAFHTLYEQGI 190

Query: 119 PMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR 178
           P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK GKL L   R
Sbjct: 191 PVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKLHL---R 247

Query: 179 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 238
           Q+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS  ++L+LASLS 
Sbjct: 248 QIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQLLHLASLSG 307

Query: 239 ILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 298
           ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP ASLG+AL+LLV
Sbjct: 308 ILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNASLGAALSLLV 367

Query: 299 QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 358
           QA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQALQLGQDAN   GF
Sbjct: 368 QAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLGQDANSPYGF 427

Query: 359 -NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
            +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG+ISLSDVFRFLLG
Sbjct: 428 ISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFRFLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 321/422 (76%), Positives = 360/422 (85%), Gaps = 16/422 (3%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G  NM++D+    
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGGSNMDLDNDPF- 129

Query: 60  PEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFH 111
           P G          + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VKQAFH
Sbjct: 130 PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVKQAFH 189

Query: 112 VLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK 171
            LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK GK
Sbjct: 190 TLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGK 249

Query: 172 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL 231
           L L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS  ++L
Sbjct: 250 LHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQLL 306

Query: 232 YLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLG 291
           +LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP ASLG
Sbjct: 307 HLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNASLG 366

Query: 292 SALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 351
           +AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQALQLGQD
Sbjct: 367 AALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLGQD 426

Query: 352 ANPSLGF-NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 410
           AN   GF +GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG+ISLSDVFRFL
Sbjct: 427 ANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFRFL 486

Query: 411 LG 412
           LG
Sbjct: 487 LG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/404 (76%), Positives = 355/404 (87%), Gaps = 5/404 (1%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG-NMEVDDVVMRP 60
           YKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G NME+D+V +RP
Sbjct: 67  YKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGSNMELDEVFLRP 125

Query: 61  EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM 120
           E   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQAFHVLYEQG+P+
Sbjct: 126 EVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQAFHVLYEQGVPL 185

Query: 121 VPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQM 180
            PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK GKL LN  RQ+
Sbjct: 186 APLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKLHLN--RQI 243

Query: 181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL 240
           DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+PIIHS+   GS  ++L+LASLS IL
Sbjct: 244 DGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIPIIHSSSRDGSFPQLLHLASLSGIL 303

Query: 241 KCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQA 300
           KCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE+N RPFAMLRP ASLG AL+LLVQA
Sbjct: 304 KCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGESNVRPFAMLRPNASLGDALSLLVQA 363

Query: 301 DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG-FN 359
           +VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD+++IHQALQLGQDAN   G FN
Sbjct: 364 EVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDKISIHQALQLGQDANSPYGFFN 423

Query: 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 403
           GQRCQMCL SDPLHKVMERLANPGVRRL+IVEAGSKRVEG+ISL
Sbjct: 424 GQRCQMCLGSDPLHKVMERLANPGVRRLLIVEAGSKRVEGVISL 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/420 (74%), Positives = 354/420 (84%), Gaps = 12/420 (2%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G  NM+VDDV +R
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGRSNMDVDDVFLR 129

Query: 60  P-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLY 114
                 E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LY
Sbjct: 130 TADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILY 189

Query: 115 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 174
           EQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  +
Sbjct: 190 EQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHI 249

Query: 175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA 234
           +  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LA
Sbjct: 250 S--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLA 307

Query: 235 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSAL 294
           SLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSAL
Sbjct: 308 SLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSAL 367

Query: 295 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP 354
           ALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P
Sbjct: 368 ALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASP 427

Query: 355 SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
             G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 428 PYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  615 bits (1587), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/415 (75%), Positives = 353/415 (85%), Gaps = 10/415 (2%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G  NM+VDDV +R
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGRSNMDVDDVFLR 129

Query: 60  PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 119
               A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LYEQG+P
Sbjct: 130 T---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILYEQGIP 186

Query: 120 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 179
           + PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  ++  RQ
Sbjct: 187 LAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHIS--RQ 244

Query: 180 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 239
            DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LASLS I
Sbjct: 245 FDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLASLSGI 304

Query: 240 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 299
           LKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSALALLVQ
Sbjct: 305 LKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSALALLVQ 364

Query: 300 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG-F 358
           A+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQD++P  G F
Sbjct: 365 AEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDSSPPYGIF 424

Query: 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
           NGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 425 NGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 479

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  605 bits (1561), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 308/420 (73%), Positives = 350/420 (83%), Gaps = 12/420 (2%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G  NM+VD V  R
Sbjct: 72  YKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGRENMDVDGVFPR 129

Query: 60  -----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLY 114
                 E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LY
Sbjct: 130 MTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILY 189

Query: 115 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 174
           EQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  +
Sbjct: 190 EQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHI 249

Query: 175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA 234
           +  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LA
Sbjct: 250 S--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLA 307

Query: 235 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSAL 294
           SLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSAL
Sbjct: 308 SLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSAL 367

Query: 295 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP 354
           +LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P
Sbjct: 368 SLLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASP 427

Query: 355 SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
             G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct: 428 PYGIFNGQRCHMCLRSDSLLKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/413 (72%), Positives = 346/413 (83%), Gaps = 5/413 (1%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPE 61
           +KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S NME+DDV + PE
Sbjct: 67  FKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-NMELDDVSVCPE 124

Query: 62  GFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMV 121
                S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAFH+LYEQG+PM 
Sbjct: 125 VIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAFHILYEQGIPMA 184

Query: 122 PLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMD 181
           PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK GK+ LN  RQ+D
Sbjct: 185 PLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEGKMHLN--RQID 242

Query: 182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 241
           G+GR   + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++L+LASLS ILK
Sbjct: 243 GSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQLLHLASLSGILK 302

Query: 242 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD 301
           CICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAMLRP ASLG+AL+LL QA+
Sbjct: 303 CICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLRPNASLGAALSLLAQAN 362

Query: 302 VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF-NG 360
           VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQALQLGQ+AN S  F NG
Sbjct: 363 VSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQALQLGQNANSSNAFYNG 422

Query: 361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
           QRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSKRVEG+ISLSDVFRFLLG+
Sbjct: 423 QRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDVFRFLLGI 475

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/427 (70%), Positives = 346/427 (81%), Gaps = 21/427 (4%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDD---- 55
           +KFYVDG+WR DE    VSG YG VN V +    P +    I  ET G  NME+DD    
Sbjct: 67  FKFYVDGQWRVDEQLSFVSGPYGPVNTVVLTKDPPQI----IDSETPGRSNMELDDYFFI 122

Query: 56  --------VVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 107
                   V    E     S ADL++SR RIS+FLSTHT YELLP+SGKV ALDV L VK
Sbjct: 123 GAELVTLLVGTFQEVIQGMSAADLEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVK 182

Query: 108 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 167
           +AFH+LYEQG+P  PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAW
Sbjct: 183 RAFHILYEQGIPTAPLWDFCKGQFVGVLAALDFILILRELGTHGSNLTEEELETHTISAW 242

Query: 168 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 227
           K GK+ L+  RQ+DG+GR   + L+ AGPYDSLK+VA KILQN ++TVPI+HS+   GS 
Sbjct: 243 KEGKMHLS--RQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTVPILHSSAQDGSF 300

Query: 228 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 287
            ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAML+P 
Sbjct: 301 PQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLKPN 360

Query: 288 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ 347
           ASLG+AL+LLVQA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQALQ
Sbjct: 361 ASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQALQ 420

Query: 348 LGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 406
           LGQDAN S G FNGQRCQMCLR+D LHKVMERLANPGVRRL+IVEAGSKRVEG+ISLSDV
Sbjct: 421 LGQDANSSYGFFNGQRCQMCLRTDSLHKVMERLANPGVRRLLIVEAGSKRVEGVISLSDV 480

Query: 407 FRFLLGV 413
           FRFLLGV
Sbjct: 481 FRFLLGV 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573006|ref|XP_003554656.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 290/414 (70%), Positives = 342/414 (82%), Gaps = 10/414 (2%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF VDGEWRHD+ QP V+G+ GVVN +YI V +PD++P+ ++ ET G  +MEVD++   
Sbjct: 72  YKFNVDGEWRHDDQQPFVNGSCGVVNTIYI-VREPDILPSILNTETPGRSHMEVDNMEAN 130

Query: 60  PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 119
           P    +   +DL++SR RIS FLSTHT Y LLP+SGKV ALD+NL VKQAFHVLYEQG+ 
Sbjct: 131 P----RMPVSDLEVSRHRISVFLSTHTAYNLLPESGKVIALDINLPVKQAFHVLYEQGVS 186

Query: 120 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 179
           M PLWD FK +FVGVLSA+DFILIL+ELG +GSNLT+E+LETHTI+AWK GK Q    R 
Sbjct: 187 MAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKFQQ--FRT 244

Query: 180 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 239
           +D NG   P   V AGP++ LK+VALK+LQNKV+TVPIIHS+   GS  ++L+LASLS I
Sbjct: 245 LDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSYPQLLHLASLSGI 304

Query: 240 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 299
           LK ICRHFKHS SSLPILQ PV+SI LGTW+PR+GE NGRP AML P+ASLG+AL++ VQ
Sbjct: 305 LKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGEPNGRPLAMLMPSASLGAALSMFVQ 364

Query: 300 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA-NPSLGF 358
           A VSSIPIVD NDSLLDIYSRSDITALAKDKAYA+I LDE++IHQAL LGQDA +PS  +
Sbjct: 365 AKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDATSPSGIY 424

Query: 359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
           NGQRC MCLRS+ L+KVMERLANPGVRRLV+VEAGSKRVEGIISLSDVFRFLLG
Sbjct: 425 NGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573008|ref|XP_003554657.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Glycine max]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 345/421 (81%), Gaps = 14/421 (3%)

Query: 2   YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
           YKF VDGEWRHD+ QP V+G+ GVVN +YI V +PD++P+ ++ ET G  +MEVD++++ 
Sbjct: 72  YKFNVDGEWRHDDQQPFVNGSCGVVNTIYI-VREPDILPSILNTETPGRSHMEVDNMLLD 130

Query: 60  PEGFAQYSEA-------DLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHV 112
              +  Y EA       DL++SR RIS FLSTHT Y LLP+SGKV ALD+NL VKQAFHV
Sbjct: 131 -MTWKFYQEANPRMPVSDLEVSRHRISVFLSTHTAYNLLPESGKVIALDINLPVKQAFHV 189

Query: 113 LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKL 172
           LYEQG+ M PLWD FK +FVGVLSA+DFILIL+ELG +GSNLT+E+LETHTI+AWK GK 
Sbjct: 190 LYEQGVSMAPLWDFFKSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKF 249

Query: 173 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 232
           Q    R +D NG   P   V AGP++ LK+VALK+LQNKV+TVPIIHS+   GS  ++L+
Sbjct: 250 QQF--RTLDSNGGSYPWRFVHAGPHECLKDVALKVLQNKVSTVPIIHSSSEDGSYPQLLH 307

Query: 233 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGS 292
           LASLS ILK ICRHFKHS SSLPILQ PV+SI LGTW+PR+GE NGRP AML P+ASLG+
Sbjct: 308 LASLSGILKGICRHFKHSLSSLPILQLPVASIPLGTWMPRVGEPNGRPLAMLMPSASLGA 367

Query: 293 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352
           AL++ VQA VSSIPIVD NDSLLDIYSRSDITALAKDKAYA+I LDE++IHQAL LGQDA
Sbjct: 368 ALSMFVQAKVSSIPIVDANDSLLDIYSRSDITALAKDKAYARISLDEISIHQALLLGQDA 427

Query: 353 -NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            +PS  +NGQRC MCLRS+ L+KVMERLANPGVRRLV+VEAGSKRVEGIISLSDVFRFLL
Sbjct: 428 TSPSGIYNGQRCHMCLRSESLYKVMERLANPGVRRLVVVEAGSKRVEGIISLSDVFRFLL 487

Query: 412 G 412
           G
Sbjct: 488 G 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.987	0.837	0.75	1.7e-160
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.474	0.601	0.285	6e-30
ZFIN|ZDB-GENE-060421-6938	342	zgc:136850 "zgc:136850" [Danio	0.394	0.476	0.327	1.5e-28
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.472	0.345	0.284	1.7e-28
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.474	0.371	0.285	1.7e-28
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.474	0.346	0.285	3e-28
UNIPROTKB|Q9UGJ0	569	PRKAG2 "5'-AMP-activated prote	0.474	0.344	0.285	6.9e-28
DICTYBASE|DDB_G0272542	577	prkag "AMP-activated protein k	0.399	0.285	0.311	4.9e-26
UNIPROTKB|F1P1P1	382	PRKAG3 "Uncharacterized protei	0.474	0.513	0.258	2e-24
CGD|CAL0001497	336	SNF4 [Candida albicans (taxid:	0.462	0.568	0.262	6.6e-18

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
 Identities = 315/420 (75%), Positives = 355/420 (84%)

Query:     2 YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG--NMEVDDVVMR 59
             YKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G  NM+VDDV +R
Sbjct:    72 YKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGRSNMDVDDVFLR 129

Query:    60 ---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLY 114
                P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVNL VKQAFH+LY
Sbjct:   130 TADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQAFHILY 189

Query:   115 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 174
             EQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK GK  +
Sbjct:   190 EQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWKEGKAHI 249

Query:   175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA 234
             +  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  ++L+LA
Sbjct:   250 S--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQLLHLA 307

Query:   235 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSAL 294
             SLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP ASLGSAL
Sbjct:   308 SLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASLGSAL 367

Query:   295 ALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP 354
             ALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQALQLGQDA+P
Sbjct:   368 ALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQDASP 427

Query:   355 SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 413
               G FNGQRC MCLRSD L KVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF+FLLG+
Sbjct:   428 PYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQFLLGL 487

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   116 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 169

Query:   249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   170 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 220

Query:   309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 368
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   221 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 270

Query:   369 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   271 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 312

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

ZFIN|ZDB-GENE-060421-6938 zgc:136850 "zgc:136850" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
 Identities = 61/186 (32%), Positives = 86/186 (46%)

Query:    40 PNTISPETSGN-MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 98
             P T+ P T    ME + + M+  G  Q  +AD+       + F  +H  Y+ +P S K+ 
Sbjct:     4 PQTMDPLTEFPFMEDEGLTMKRTGPLQDPDADVY------AKFFMSHCCYDAIPTSSKLV 57

Query:    99 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-E 157
               D  L VK+AF  L   G+   PLWDD    FVG+L+  DFI IL       S L +  
Sbjct:    58 VFDTTLQVKKAFFALVANGVRAAPLWDDKLQCFVGMLTITDFINILHRYYK--SPLVQIY 115

Query:   158 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPI 217
             ELE H I  W+   LQ ++              L+   P  SL E    +L+NK+  +P+
Sbjct:   116 ELEEHKIETWRETYLQYSVTS------------LISIAPDSSLFEAIYSLLKNKIHRLPV 163

Query:   218 IH-STG 222
             I   TG
Sbjct:   164 IDPETG 169

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
 Identities = 64/225 (28%), Positives = 116/225 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   355 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFM 408

Query:   249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                     +++ +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   409 SEMPKPAFMKKNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 459

Query:   309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ-RCQMCL 367
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G  +C M  
Sbjct:   460 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEGVVKCSML- 510

Query:   368 RSDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
               + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 --ETLETIVDRIVKAEVHRLVVVNEADS--IVGIISLSDILQALV 551

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   318 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 371

Query:   249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   372 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPNTPIIKALNIFVERRISALPVV 422

Query:   309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 368
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   423 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 472

Query:   369 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   473 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 514

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   356 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 409

Query:   249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   410 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 460

Query:   309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 368
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   461 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCSK 510

Query:   369 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   511 LETLETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

UNIPROTKB|Q9UGJ0 PRKAG2 "5'-AMP-activated protein kinase subunit gamma-2" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 6.9e-28, Sum P(2) = 6.9e-28
 Identities = 64/224 (28%), Positives = 115/224 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P  SL +    +++NK+  +P+I     +G+    LY+ +   ILK + + F 
Sbjct:   359 KPLVNISPDASLFDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFM 412

Query:   249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                     ++Q +  + +GT+            A + P   +  AL + V+  +S++P+V
Sbjct:   413 SDMPKPAFMKQNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVV 463

Query:   309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 368
             D++  ++DIYS+ D+  LA +K Y  +   ++ + QALQ     + S  F G     C +
Sbjct:   464 DESGKVVDIYSKFDVINLAAEKTYNNL---DITVTQALQ-----HRSQYFEG--VVKCNK 513

Query:   369 SDPLHKVMERLANPGVRRLVIV-EAGSKRVEGIISLSDVFRFLL 411
              + L  +++R+    V RLV+V EA S  + GIISLSD+ + L+
Sbjct:   514 LEILETIVDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006853 "carnitine shuttle" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0006110 "regulation of glycolysis" evidence=IMP

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IMP

GO:0008607 "phosphorylase kinase regulator activity" evidence=IMP

GO:0019901 "protein kinase binding" evidence=IDA

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IMP

GO:0046324 "regulation of glucose import" evidence=TAS

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0030295 "protein kinase activator activity" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=TAS

GO:0016126 "sterol biosynthetic process" evidence=TAS

GO:0019217 "regulation of fatty acid metabolic process" evidence=IMP

DICTYBASE|DDB_G0272542 prkag "AMP-activated protein kinase gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
 Identities = 57/183 (31%), Positives = 93/183 (50%)

Query:   230 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 289
             IL++ + S IL  + + F      L  L  P+ S+ +GT+   +      P         
Sbjct:   404 ILHILTHSRILAFMMKSFPQLPEKL--LSIPIGSLGIGTFATVVTVMTHTP--------- 452

Query:   290 LGSALALLVQADVSSIPIVDDNDS-LLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 348
             L   L LL +  +S++PI+D   S ++D+YS+SD+T ++K    +   L+ + +HQ L  
Sbjct:   453 LVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLN-LPVHQVLS- 510

Query:   349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 408
                    L    ++   C R D L  V+ER     V RLV +++ SK+VEGI+SLSD+  
Sbjct:   511 ---TFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDS-SKKVEGILSLSDILN 566

Query:   409 FLL 411
             +LL
Sbjct:   567 YLL 569

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1P1P1 PRKAG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
 Identities = 58/224 (25%), Positives = 116/224 (51%)

Query:   189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +PLV   P DSL +    ++++K+  +P+I     +G+   +L++ +   ILK +  H  
Sbjct:   175 KPLVYISPSDSLFDAVYSLIKHKIHRLPVIEPI--SGN---VLHILTHKRILKFL--HIF 227

Query:   249 HSSSSLP-ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 307
              S+   P  L++ V  + +GT+         R  A++   A + +AL + V   VS++P+
Sbjct:   228 GSTIPKPRFLKKTVQELCVGTF---------RDVAVVPENAPVYAALEIFVDRRVSALPV 278

Query:   308 VDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCL 367
             V+    ++ +YSR D+  LA  K Y  +   ++++ +AL+       ++   G     C 
Sbjct:   279 VNAAGQVVGLYSRFDVIHLAAQKTYNNL---DISVREALR-----QRTVCLEG--VLTCY 328

Query:   368 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
               + +  +++R+A   V RLV+V+  ++   GI+SLSD+ + L+
Sbjct:   329 PHETMEDIIDRIAEEQVHRLVLVDE-NRYPRGIVSLSDILQALV 371

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

CGD|CAL0001497 SNF4 [Candida albicans (taxid:5476)]

 Score = 152 (58.6 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 57/217 (26%), Positives = 102/217 (47%)

Query:   196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 255
             P+ SL E  +K+L++K   +P+I         + ++ + +   ILK +  + K +     
Sbjct:   141 PFKSLYEACVKMLESKARRIPLIDEDEKTKR-EIVVSVLTQYRILKFVALNCKETK---- 195

Query:   256 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 314
             +L +P+ ++  LG  V ++         M  P   +   + LL +  VSSIPIVD    L
Sbjct:   196 MLLKPLKNLSGLGD-VKKLSTCT-----MDTPVIEV---IHLLTENSVSSIPIVDGQGKL 246

Query:   315 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 374
             +++Y   DI AL K   Y  +   ++++  AL        S  F G     C  +D L  
Sbjct:   247 INVYEAVDILALVKGGMYTDL---DLSVGDAL-----LRRSEEFEG--VHTCTLNDRLST 296

Query:   375 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
             +M+ +    + RL +V+   K V  +I+LSD+  ++L
Sbjct:   297 IMDTIRKSRLHRLFVVDDEGKLVS-VITLSDILNYIL 332

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005641 "nuclear envelope lumen" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0007031 "peroxisome organization" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0045722 "positive regulation of gluconeogenesis" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7476	0.9878	0.8377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-36
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	5e-20
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-10
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-07
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	4e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	1e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-05
pfam00571	57	pfam00571, CBS, CBS domain	2e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	2e-05
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-05
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	4e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	7e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	5e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	7e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.002
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.003
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.003
pfam00571	57	pfam00571, CBS, CBS domain	0.003
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.004
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  129 bits (326), Expect = 1e-36
 Identities = 52/134 (38%), Positives = 72/134 (53%), Gaps = 17/134 (12%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 339 EMNIHQALQLGQDANPSLGFNG-QRCQ--MCLRSDPLHKVMERLANPGVRRLVIVEAGSK 395
                +AL+          F G + C    CLR+     V  R     V RLV+V+   K
Sbjct: 61  VG---EALERRSQ-----DFEGVRTCSPDDCLRTIFDLIVKAR-----VHRLVVVDEN-K 106

Query: 396 RVEGIISLSDVFRF 409
           RVEGIISLSD+ +F
Sbjct: 107 RVEGIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 95  GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 154
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 155 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 214
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 215 VPIIHSTGPAGSCQEILYLASLSDILK 241
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 337
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 338 DEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 397
            ++     + +  D                    L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVVTVSPD------------------TSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 398 EGIISLSDVFRF 409
            GI++ SD+ R 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 2  YKFYVDGEWRHDENQPHVSGNYGVVN 27
          YKF VDGEW HD + P V+  +G +N
Sbjct: 50 YKFIVDGEWVHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 309 DDNDSLLDIYSRSDI 323
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 286 PTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 345
              ++   LAL+        P+VDD   L+ I + +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 405
                 A+P               + L   ++R+A   + RL +V+  S R+ GI+S SD
Sbjct: 66  PVT---ASPD--------------ETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 406 VFRF 409
           + R 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 285 RPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNIH 343
           RP A++  A  L+ + ++ ++ +VDD   L+ I+S  DI   +A   A A     +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA----LDTPVS 62

Query: 344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 403
           + +      N                D + + M  +     R L +V+ G  ++ GI+S+
Sbjct: 63  EIMT----RNV---------ITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 404 SDVFRF 409
            DV + 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 27/133 (20%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 337
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVK- 58

Query: 338 DEM--NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 395
           D M  ++        D +  L             D +  + +      V RL++ +   +
Sbjct: 59  DVMTKDVITI-----DEDEQL------------YDAIRLMNKH----NVGRLIVTDDEGR 97

Query: 396 RVEGIISLSDVFR 408
            V GII+ +D+ R
Sbjct: 98  PV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 20/130 (15%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
           +    ++P  S+  AL L+ +  VS++P+VDD   L+ I +  DI           + + 
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRLLPVK 65

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLA-NPGVRRLVIVEAGSKRV 397
           E+     + +  D                   PL + +E +     +RRL +V+    ++
Sbjct: 66  EVMTKPVVTVDPD------------------TPLEEALELMVERHKIRRLPVVDDDGGKL 107

Query: 398 EGIISLSDVF 407
            GII+LSD+ 
Sbjct: 108 VGIITLSDIL 117

Length = 117

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 342
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+  
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVAT 65

Query: 343 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK-RVEGII 401
              L +  D                  +PL   ++R+A+ G+R+L +V+ G+  +V G++
Sbjct: 66  PPLLTVHPD------------------EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLL 107

Query: 402 SLSDV 406
           +  +V
Sbjct: 108 TRENV 112

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 22/127 (17%)

Query: 282 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE 339
             + P  ++  A  L+ + DV ++P+ + ND L+ I +  DI   A+A+ +      + +
Sbjct: 4   VTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGD 62

Query: 340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG 399
           +     +                       D + +    +    VRRL +V+    R+ G
Sbjct: 63  VMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVG 103

Query: 400 IISLSDV 406
           I+SL D+
Sbjct: 104 IVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 309 DDNDSLLDIYSRSDIT 324
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 336
           RP     P  ++  A  L+ +  VSS+ +V D+  L+ I +  D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDPDTP- 58

Query: 337 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 396
           + E+     + +  DA                 + L  ++ER    G+  L +V+ G  R
Sbjct: 59  VSEVMTAPPITIPPDA--------------TVFEALLLMLER----GIHHLPVVDDG--R 98

Query: 397 VEGIISLSDVFRF 409
           + G+IS +D+ R 
Sbjct: 99  LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 368 RSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            +  L + +E L + G+ R+ + E  S  V GI+S   +  FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 293 ALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 352
           A  L+ + ++S +P+VD+   L+   S SD+  L          L    I          
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGL---LLSPDDLLLYRTITFKELSE--K 69

Query: 353 NPSLGFNGQRCQM-CLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 409
                    R  + C  S  L +V+ +L    V R+ +V+   K   G+I+L+D+   
Sbjct: 70  FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 192 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 249
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 250 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 307
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 308 VDDNDSLLDIYSRSDI 323
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 24/132 (18%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
                  P  SL  A + + +  +SSI +V D+   L I +  DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 339 EMNIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV-EAGSKR 396
                  L  G D    +G               L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 397 VEGIISLSDVFR 408
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 96  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 155
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 156 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 215
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 216 PIIHSTGPAGSCQEILYLASLSDILK 241
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 369 SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
              L + +E +   G+ RL +V     ++ GI++L D+ R LL 
Sbjct: 15  DTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 323
           P   + P  S+ +A+ L+++ D+  +P+V++ D L+ I  R D+
Sbjct: 76  PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 22/131 (16%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
            P   +RP A++  A  LL++   +++P+V+    ++ I SR D+     +KA   +   
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDV-----EKA---LRHG 52

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
                    LG    P   +            PL +V E +    + R+ +VE G  R+ 
Sbjct: 53  ---------LGHA--PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDG--RLV 99

Query: 399 GIISLSDVFRF 409
           GI++ +D+ R 
Sbjct: 100 GIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
COG2524	294	Predicted transcriptional regulator, contains C-te	99.76
COG2524	294	Predicted transcriptional regulator, contains C-te	99.67
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.67
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.63
COG3620	187	Predicted transcriptional regulator with C-termina	99.63
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.57
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.55
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.54
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.54
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.54
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.54
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.53
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.52
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.52
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.52
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.51
COG3620	187	Predicted transcriptional regulator with C-termina	99.5
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.49
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.49
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.49
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.49
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.49
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.48
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.48
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.48
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.48
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.48
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.48
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.48
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.48
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.48
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.48
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.48
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.47
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.47
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.47
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.47
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.47
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.46
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.46
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.46
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.45
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.45
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.45
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.45
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.45
COG2905	610	Predicted signal-transduction protein containing c	99.45
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.44
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.44
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.44
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.44
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.44
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.44
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.43
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.43
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.43
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.43
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.43
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.43
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.43
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.43
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.43
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.42
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.42
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.42
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.41
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.41
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.41
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.4
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.4
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.39
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.39
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.39
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.39
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.38
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.38
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.37
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.37
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.37
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.37
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.36
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.36
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.36
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.36
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.35
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.35
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.35
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.35
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.35
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.35
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.34
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.34
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.34
COG0517	117	FOG: CBS domain [General function prediction only]	99.34
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.34
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.34
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.34
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.33
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.33
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.33
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.33
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.32
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.32
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.31
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.31
COG4109	432	Predicted transcriptional regulator containing CBS	99.31
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.31
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.3
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.3
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.3
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.3
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.3
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.3
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.3
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.29
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.29
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.29
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.29
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.29
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.28
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.28
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.27
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.27
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.27
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.27
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.27
COG0517	117	FOG: CBS domain [General function prediction only]	99.26
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.25
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.25
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.25
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.25
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.25
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.25
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.25
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.24
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.24
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.24
COG2905	610	Predicted signal-transduction protein containing c	99.24
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.24
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.24
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.24
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.23
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.23
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.23
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.23
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.23
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.23
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.22
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.22
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.22
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.21
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.21
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.2
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.19
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.17
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.16
PRK11573	413	hypothetical protein; Provisional	99.16
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.16
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.15
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.15
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.13
COG4109	432	Predicted transcriptional regulator containing CBS	99.12
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.12
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.11
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.06
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.06
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.03
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.0
PRK11573	413	hypothetical protein; Provisional	98.97
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.97
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.95
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.94
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	98.91
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.9
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.79
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.72
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.67
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.66
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.61
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.59
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.53
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.5
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.45
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.25
KOG1616	289	consensus Protein involved in Snf1 protein kinase	98.24
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.13
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.09
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.99
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.89
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.82
cd02861	82	E_set_proteins_like E or "early" set-like proteins	97.82
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.7
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.54
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.28
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.1
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.75
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.42
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.17
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.09
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.03
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	90.77
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	87.41
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	85.2
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	85.16

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=1.5e-35  Score=288.86  Aligned_cols=303  Identities=30%  Similarity=0.543  Sum_probs=257.5

Q ss_pred             HHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCC
Q 015103           74 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  153 (413)
Q Consensus        74 ~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~  153 (413)
                      ....+..|++.++||+++|.+++++++|..+++++||++|..++.+++|+||....+|+|++++.||+.++...+..+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999888764221


Q ss_pred             C-CHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEE
Q 015103          154 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  232 (413)
Q Consensus       154 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~G  232 (413)
                      . ..+.+++..+..|++......         ....++++.+.|..++.++...+.+++++++||.|  .+.|   .+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence            1 223344444455554422211         12344559999999999999999999999999996  3456   8999


Q ss_pred             EeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC
Q 015103          233 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  312 (413)
Q Consensus       233 ivt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  312 (413)
                      ++|++.|++++..+.+..+ ....+..++.++.+|+|.         .+..+..++++.+|+++|..++++++||||+.|
T Consensus       201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            9999999999998877655 457789999999999996         688999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhhhhhhhcccCccc-HHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103          313 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  391 (413)
Q Consensus       313 ~lvGiit~~dl~~~~~~~~~~~~~l~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd  391 (413)
                      +.+|+++..|+..+...+.|....   .+ +++++..+.       .-...+++|.+++||.+++++|..+++||+||||
T Consensus       271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd  340 (381)
T KOG1764|consen  271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD  340 (381)
T ss_pred             ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence            999999999999998887776654   45 777765432       2234589999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHhh
Q 015103          392 AGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       392 ~~~~~liGvIS~~DIl~~l~  411 (413)
                       ++|+++|+||++||+.++.
T Consensus       341 -~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  341 -EDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             -CCCcEEEEeeHHHHHHHHH
Confidence             5899999999999999985

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.76  E-value=5.4e-18  Score=150.93  Aligned_cols=122  Identities=18%  Similarity=0.381  Sum_probs=111.5

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      .+++++|+++++++.+++++.+|.++|.+++++..||+|+ ++++|++|.+|+..+..++.+      +..|++      
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------  238 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------  238 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence            4677899999999999999999999999999999999985 599999999999998887643      356777      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  413 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~~  413 (413)
                             +|.+.++++..++.+.+|++.|..+++.||.|+| .+|+++|+||++||++.|.++
T Consensus       239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d-s~gkpvGiITrTDIL~~ia~~  293 (294)
T COG2524         239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD-SNGKPVGIITRTDILTRIAGL  293 (294)
T ss_pred             -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEc-cCCcEEEEEehHHHHHHhhcc
Confidence                   7888999999999999999999999999999999 589999999999999998764

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.67  E-value=4.2e-16  Score=138.92  Aligned_cols=120  Identities=19%  Similarity=0.328  Sum_probs=106.7

Q ss_pred             CCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       181 ~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ..++..|+++++++.+++|+.+|+++|.+++++..||+|+    +   +++|++|.+||...+...              
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g--------------  230 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG--------------  230 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC--------------
Confidence            3456689999999999999999999999999999999975    3   799999999999976542              


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                             ....+|+++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..+.
T Consensus       231 -------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 -------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             -------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                   2234677889999999999999999999999999999999999999999999999998543

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-15  Score=138.03  Aligned_cols=171  Identities=17%  Similarity=0.267  Sum_probs=129.7

Q ss_pred             EEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHH-HHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC
Q 015103          132 VGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN  210 (413)
Q Consensus       132 vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~  210 (413)
                      +| ++.+|+-..|.++... -+.+.++++...-+. .+...+.    ...-...++|+++++++.+++++.+|.++|.++
T Consensus       201 vg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~----~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H  274 (382)
T COG3448         201 VG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRR----MGELTCADIMSRDVVTVSTDTSIDHARKLLQEH  274 (382)
T ss_pred             cC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHH----hccccHHHhcCccceecCCcCChHHHHHHHHHc
Confidence            34 5788999999887543 234567776643221 1111111    122334568999999999999999999999999


Q ss_pred             CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCH
Q 015103          211 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL  290 (413)
Q Consensus       211 ~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l  290 (413)
                      +++.+||+|+   ..   +++|++|++|+++..    +.      ..-+.+..+    ..++++.+|+.++.++.++++.
T Consensus       275 ~ikaLPV~d~---~~---rl~GiVt~~dl~~~a----~~------~p~qrlr~~----~~~~vk~imt~~v~tv~pdtpa  334 (382)
T COG3448         275 RIKALPVLDE---HR---RLVGIVTQRDLLKHA----RP------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDTPA  334 (382)
T ss_pred             Cccccccccc---cc---ceeeeeeHHHHhhcc----Cc------chHHHhhcc----CCCcccccccCcceeecCCCcH
Confidence            9999999975   33   899999999998722    11      011112211    2357888999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          291 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       291 ~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .+.+-++.+.+.+++||+|++|+++|++|..|++..+.
T Consensus       335 ~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         335 VELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             HHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            99999999999999999999999999999999998554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=3.4e-15  Score=123.08  Aligned_cols=119  Identities=39%  Similarity=0.659  Sum_probs=95.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|++.+...+.....   ..++.+.+....       .|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence            56789999999999999999999999999989999999999999986543322111   123443221111       34


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence            45688999999999999999999999999999 57999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.63  E-value=1.5e-15  Score=137.81  Aligned_cols=126  Identities=18%  Similarity=0.377  Sum_probs=108.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +..++|+++++++..++++.+|.++|.+++++++||+|++.+++|+++++|+.+-..-..+.++.           ..+ 
T Consensus       246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~~-  313 (382)
T COG3448         246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FLR-  313 (382)
T ss_pred             cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------ccC-
Confidence            56788999999999999999999999999999999999999999999999998854433332221           111 


Q ss_pred             CCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                       ...++ +|++++.++.++++..+.+-++.+.+.|.+||+| +.|+++||||.+|++.++.
T Consensus       314 -~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         314 -PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             -CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHH
Confidence             11233 8999999999999999999999999999999999 6999999999999998875

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.63  E-value=2.6e-15  Score=124.24  Aligned_cols=120  Identities=18%  Similarity=0.385  Sum_probs=102.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++.+|..+++.+.+++++.+++++|.+++++.+||+++ |+++|-||..++.++..++..   .+.+.++++       
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~-------  134 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVRE-------  134 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHH-------
Confidence            455679999999999999999999999999999999984 999999999999997654421   122456665       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|+.++++++++.++..+..++..++.  +.|++  +|+++||||+.||++.+.+
T Consensus       135 ------vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 ------VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ------HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence                  788899999999999999998888765  77776  6999999999999998865

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.58  E-value=3.2e-14  Score=115.67  Aligned_cols=110  Identities=12%  Similarity=0.269  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+.... ..     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence            35678999999999999999999999999988999999999999874221 10     1123444             55


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~  111 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF  111 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence            56788999999999999999999999999999 57999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=5.5e-14  Score=114.75  Aligned_cols=111  Identities=16%  Similarity=0.301  Sum_probs=93.4

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  360 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  360 (413)
                      +.++.+++++.+|++.|.+++...+||+|++|+++|+++..|+.+.........   .+.++.+             +|.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~---~~~~v~~-------------~~~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPG---CTAPVEN-------------VMT   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCc---ccCCHHH-------------Hhc
Confidence            567899999999999999999999999999999999999999987543211011   1245655             455


Q ss_pred             CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence            5788999999999999999999999999999 5789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.6e-14  Score=113.69  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=84.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      .++++.+++++.+|.+.|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            36789999999999999999999999999974 89999999999876221                              


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF  409 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~~  409 (413)
                          +.++.+++++.+|++.|.+++++++||+| ++ |+++|+||.+|++++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVID-PSTGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEE-CCCCCceEEeehhhhhcC
Confidence                45789999999999999999999999999 46 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.5e-13  Score=112.07  Aligned_cols=112  Identities=21%  Similarity=0.259  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++..|+++.+..+..   ...+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYE-------------I   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHH-------------H
Confidence            46789999999999999999999999999987 899999999999885432211   111235555             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      |..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||+.|++++
T Consensus        66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence            555788999999999999999999999999999 4 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.54  E-value=9e-14  Score=135.12  Aligned_cols=120  Identities=15%  Similarity=0.221  Sum_probs=103.0

Q ss_pred             ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          271 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       271 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      .+++++|.+  +++++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+.+....+.    .+.+.++.+    
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~----  273 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD----  273 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence            467888987  8999999999999999999999888888998999999999999987544221    122345665    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                               +|.+++.++.+++++.+|++.|.+++++++||+|  +|+++|+||++||+++
T Consensus       274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence                     6777899999999999999999999999999998  4899999999999975

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.54  E-value=5.5e-14  Score=116.83  Aligned_cols=113  Identities=14%  Similarity=0.225  Sum_probs=93.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..+++.....+... .   +.++.+             +|
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~---~~~v~~-------------im   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-P---SDPVSK-------------AL   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-C---CCcHHH-------------Hh
Confidence            577899999999999999999999999999889999999999998754432211 1   346666             66


Q ss_pred             CCcceEEeCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          360 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~---------~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      .+++.++.+++++.++.+.|.         +.+.+++||+| ++|+++|+||.+||++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            778999999999999999653         34678888998 579999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.8e-13  Score=112.40  Aligned_cols=111  Identities=22%  Similarity=0.319  Sum_probs=92.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++..|+.+....+.    .+.+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~   64 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM   64 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence            5678999999999999999999999999998899999999999988553211    111344555             33


Q ss_pred             CC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC---CeEEEEEehHHHHH
Q 015103          360 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS---KRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~---~~liGvIS~~DIl~  408 (413)
                      .+  ++.++.+++++.+++++|.+++++.+||+|+ +   |+++|+||++||++
T Consensus        65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            32  5789999999999999999999999999994 5   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=8.2e-14  Score=110.85  Aligned_cols=97  Identities=45%  Similarity=0.751  Sum_probs=85.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhh
Q 015103           95 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  174 (413)
Q Consensus        95 ~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  174 (413)
                      +++++++.+.|+.+|++.|.++++.++||+|+++++++|++|..|+..++.                             
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~-----------------------------   51 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR-----------------------------   51 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence            368999999999999999999999999999986678999999999874211                             


Q ss_pred             hccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH
Q 015103          175 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  241 (413)
Q Consensus       175 ~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~  241 (413)
                                      ++++.+++++.+|+++|.+++++++||++++  +|   +++|++|.+|+++
T Consensus        52 ----------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~---~~~giit~~d~~~   97 (98)
T cd04618          52 ----------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--TG---TGLYILTSRRILK   97 (98)
T ss_pred             ----------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--CC---CceEEeehhhhhc
Confidence                            5689999999999999999999999999752  35   8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.53  E-value=2.4e-13  Score=110.96  Aligned_cols=112  Identities=20%  Similarity=0.345  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.....++...    ...++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence            466889999999999999999999999999889999999999998855432110    0123444             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~--~~liGvIS~~DIl~~  409 (413)
                      ..++.+|.+++++.++++.|.+++.+++||+| ++  |+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd-~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVD-RGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEe-CCCCCeEEEEEEhHHhhcC
Confidence            56788999999999999999999999999999 45  799999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.52  E-value=2.3e-13  Score=112.46  Aligned_cols=117  Identities=21%  Similarity=0.370  Sum_probs=95.0

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc------ccCcccHHHHHhcCCCC
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA  352 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~------~l~~~~v~~~l~~~~~~  352 (413)
                      +++.++.+++++.++++.|.+.+++++||++++|+++|+++..+++...........      .....++.+        
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--------   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD--------   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence            467889999999999999999999999999988999999999999875542211000      000122333        


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                           +|..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus        74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~  124 (124)
T cd04600          74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence                 5666889999999999999999999999999999 58999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=4.5e-13  Score=108.56  Aligned_cols=112  Identities=21%  Similarity=0.404  Sum_probs=93.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.++.++.++++.|.+++++.+||+|++++++|+++..|++..........   ...++.+             +|
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence            4667899999999999999999999999998899999999999988554321110   1234555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            56788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.52  E-value=1.8e-13  Score=132.80  Aligned_cols=120  Identities=13%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             ccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          271 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       271 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      .+++++|.++  +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+....+...     +.++.+    
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~----  267 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE----  267 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence            3678889988  99999999999999999999999999999999999999999998755422110     234555    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                               +|.+++.++.+++++.+|++.|.+++..++|||| ++|+++|+||+.||+++
T Consensus       268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence                     6667888999999999999999999999999999 57899999999999975

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=1.9e-13  Score=108.26  Aligned_cols=95  Identities=16%  Similarity=0.368  Sum_probs=85.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      +++++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            567899999999999999999999999999889999999999997621                                


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                        .+.++.+++++.++++.|.+++.+++||+| ++|+++|+||++||+++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence              145889999999999999999999999999 47899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.50  E-value=2.4e-13  Score=112.73  Aligned_cols=119  Identities=23%  Similarity=0.420  Sum_probs=99.8

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccc
Q 015103          182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  261 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i  261 (413)
                      .+..+|..+++++.|++++.+|+++|.+++++.+||+++    +   +++|-+|..+|.+.+....           ..+
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i  127 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESI  127 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cch
Confidence            345689999999999999999999999999999999964    3   8999999999999664321           112


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          262 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       262 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .+       .+++++|..+++++++++++..+-+++..+  .++.|+ ++|+++|+||+.|++++..
T Consensus       128 ~~-------~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         128 RS-------LRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hh-------hhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence            22       367888999999999999998888888654  578888 5899999999999999765

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.2e-13  Score=109.06  Aligned_cols=113  Identities=20%  Similarity=0.293  Sum_probs=93.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++++.+....+...  .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence            46788999999999999998899999999988999999999999875543221110  1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            55788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=3.6e-13  Score=111.94  Aligned_cols=121  Identities=21%  Similarity=0.327  Sum_probs=92.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH---HHHhcCCCCCCCc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH---QALQLGQDANPSL  356 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~---~~l~~~~~~~~~~  356 (413)
                      .+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+.....    .+..   +......   ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----YRTITFKELSEKFT---DSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhhhhcc---ccc
Confidence            46789999999999999999999999999988999999999999886542211100    0000   0000000   001


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..+..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++
T Consensus        75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence            14566789999999999999999999999999999 5799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.49  E-value=1.1e-12  Score=105.89  Aligned_cols=108  Identities=20%  Similarity=0.430  Sum_probs=92.5

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      +++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..+++.....+.        .++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence            35778999999999999999999999999998899999999999987544221        12444             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      |..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.|+++
T Consensus        61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~  109 (110)
T cd04605          61 MTRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK  109 (110)
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence            455788999999999999999999999999999 5799999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.49  E-value=4.5e-13  Score=109.17  Aligned_cols=111  Identities=22%  Similarity=0.348  Sum_probs=89.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|++........      +.++.+++..          
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~----------   65 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTP----------   65 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhcc----------
Confidence            4678899999999999997765 8899999988999999999999886542211      2345553221          


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                       ..+++++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus        66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR  113 (114)
T ss_pred             -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence             01356899999999999999999999999999 4789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=7.5e-13  Score=107.94  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=91.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-ccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      .++++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+.......... .+.+.++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~   68 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V   68 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence            46789999999999999999999999999988999999999999886542211110 000234444             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      |..++.++.+++++.++++.|.+.+  .+||+| ++|+++|+||..|++++
T Consensus        69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence            5567889999999999999998865  489999 58999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.2e-13  Score=109.14  Aligned_cols=116  Identities=19%  Similarity=0.323  Sum_probs=94.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-----ccCcccHHHHHhcCCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP  354 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-----~l~~~~v~~~l~~~~~~~~  354 (413)
                      ++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++............     .....++.+          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence            46788999999999999999999999999988999999999999885542211100     001234444          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                         +|..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|++++
T Consensus        72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL  122 (122)
T ss_pred             ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence               4556788999999999999999999999999999 47899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=6.6e-13  Score=107.47  Aligned_cols=110  Identities=21%  Similarity=0.379  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+.......      +.++.+             +|
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence            45678999999999999998899999999988999999999999886543211      234554             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|+.++
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~~  111 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGEL  111 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhcC
Confidence            45788999999999999999999999999999 46899999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.1e-12  Score=106.34  Aligned_cols=110  Identities=18%  Similarity=0.355  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++++....+...     +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence            466889999999999999999999999999889999999999998865432211     234554             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..+++++..++++.++++.|.+++...+||++ ++|++.|++|+.|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence            56788999999999999999999999999999 5799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.48  E-value=2.7e-13  Score=136.95  Aligned_cols=172  Identities=13%  Similarity=0.146  Sum_probs=133.1

Q ss_pred             ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHh-----CCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103          178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  252 (413)
Q Consensus       178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~-----~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~  252 (413)
                      +..+.++++|.++++++++++|+.+|++.|.+     ++...++|+|+   .+   +++|+++.+|++..      .   
T Consensus       128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~---  192 (449)
T TIGR00400       128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K---  192 (449)
T ss_pred             CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence            67788899999999999999999999999975     45678898864   45   89999999998651      0   


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh
Q 015103          253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  332 (413)
Q Consensus       253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~  332 (413)
                          .+            ..++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|++....+.. 
T Consensus       193 ----~~------------~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-  255 (449)
T TIGR00400       193 ----PE------------EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-  255 (449)
T ss_pred             ----CC------------CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence                01            1345568888899999999999999999999999999999999999999999998665321 


Q ss_pred             hhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          333 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       333 ~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                               .++.+.             ....+..+++++.+++..|.+++...++|.-     +.|++| ..++..
T Consensus       256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence                     133222             1233344578889999999999988777652     456665 545443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=5.9e-13  Score=110.16  Aligned_cols=116  Identities=17%  Similarity=0.289  Sum_probs=93.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhh-c------ccCcccHHHHHhcCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD  351 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~-~------~l~~~~v~~~l~~~~~  351 (413)
                      ++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+........... .      .....++.+       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS-------   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence            46788999999999999999999999999987 99999999999988654322110 0      000123333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                            +|..+++++.+++++.++++.|.+.+.+.++|+| ++|+++|+||..||+++
T Consensus        75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~  125 (125)
T cd04631          75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence                  4556789999999999999999999999999999 46899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=8e-13  Score=108.82  Aligned_cols=119  Identities=22%  Similarity=0.295  Sum_probs=92.4

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.+++++.+|++.|.+++.+++||+++   +|   +++|+++.+|++.++......      ....++...    
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----   64 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----   64 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence            36789999999999999999999999999964   45   899999999999765322110      001111110    


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        ......|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        65 --~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          65 --LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             --HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence              0112235567789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=6.6e-13  Score=109.82  Aligned_cols=119  Identities=20%  Similarity=0.293  Sum_probs=90.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+....... +......+..       ..+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence            56788999999999999999999999999987 99999999999988553221100000 0000000000       014


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  407 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl  407 (413)
                      |..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence            566788999999999999999999999999999 578999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.48  E-value=1e-12  Score=106.87  Aligned_cols=109  Identities=18%  Similarity=0.273  Sum_probs=91.8

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  360 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  360 (413)
                      +.++.+++++.++++.|.+.+...++|+|++|+++|+++.+|+......+...     +.++.+             +|.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~~   65 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VMN   65 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hhc
Confidence            56789999999999999999999999999889999999999998754322110     234555             444


Q ss_pred             CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+||+.
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  112 (113)
T cd04607          66 RNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence            5688999999999999999999999999999 5799999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.48  E-value=8.9e-13  Score=105.76  Aligned_cols=105  Identities=18%  Similarity=0.240  Sum_probs=89.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.....           .++.+             +|
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence            4668899999999999999999999999998899999999999986421           12333             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      .+.+.++.+++++.++++.|.+++...+||+| ++|+++|+||.+|++++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~~  106 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIADY  106 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence            45677899999999999999999999999999 57899999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1e-12  Score=106.43  Aligned_cols=109  Identities=17%  Similarity=0.332  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+..+......     .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence            46678999999999999999999999999988999999999999875432211     1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      .+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            55788999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.48  E-value=6.5e-13  Score=107.17  Aligned_cols=105  Identities=20%  Similarity=0.299  Sum_probs=91.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++.....          +.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence            5678999999999999999999999999998899999999999975211          235555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            45688999999999999999999999999999 5899999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1e-12  Score=109.35  Aligned_cols=117  Identities=23%  Similarity=0.385  Sum_probs=92.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhc--------ccCcccHHHHHhcCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ  350 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~--------~l~~~~v~~~l~~~~  350 (413)
                      ++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++..... ...        ...+.++.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence            45678999999999999999999999999988999999999999875432111 000        000122333      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF  409 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~-~~~~liGvIS~~DIl~~  409 (413)
                             +|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||++||+++
T Consensus        76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence                   56678899999999999999999999999999851 46899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.47  E-value=1.2e-12  Score=106.17  Aligned_cols=112  Identities=20%  Similarity=0.343  Sum_probs=94.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.........    ....++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence            56789999999999999999999999999988999999999999875543211    11245655             55


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCC-CCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG-SKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~-~~~liGvIS~~DIl~~  409 (413)
                      .+++.++.+++++.++++.|...+.+.+||+| + .|+++|++|..|++++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhcC
Confidence            56788999999999999999999999999998 5 6899999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.2e-12  Score=110.40  Aligned_cols=115  Identities=15%  Similarity=0.221  Sum_probs=92.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc-----c--------------cCcc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----H--------------LDEM  340 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~-----~--------------l~~~  340 (413)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++..........     .              ..+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            35678999999999999999999999999988999999999999986542111000     0              0011


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ++.+             +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+||+++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE  135 (135)
T ss_pred             cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence            2333             6667788999999999999999999999999999 4 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.5e-12  Score=105.75  Aligned_cols=110  Identities=20%  Similarity=0.352  Sum_probs=92.1

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG  360 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~  360 (413)
                      +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+..    +.+.++.+             +|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~~   65 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VMN   65 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hcc
Confidence            5678999999999999999999999999988999999999999874332211    11234554             455


Q ss_pred             CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          361 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       361 ~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      .++.++..++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus        66 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          66 SPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR  112 (113)
T ss_pred             CCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence            5788999999999999999999999999999 5789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=7.8e-13  Score=108.96  Aligned_cols=116  Identities=16%  Similarity=0.294  Sum_probs=92.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhc----ccCcccHHHHHhcCCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP  354 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~----~l~~~~v~~~l~~~~~~~~  354 (413)
                      ++.++.+++++.++++.|.+.+.+++||+|++|+++|+++..|++....... ....    .....++.+          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence            4678999999999999999999999999998899999999999987421110 0000    001223333          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                         +|..++.++..++++.++++.|.+++.+.+||+| ++|+++|++|+.|++++
T Consensus        72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence               4556788999999999999999999999999999 57999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.2e-12  Score=109.78  Aligned_cols=126  Identities=16%  Similarity=0.271  Sum_probs=93.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc--cCcccH--HHHHhcCCCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS  355 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~--l~~~~v--~~~l~~~~~~~~~  355 (413)
                      ++.++.+++++.++++.|.+.+++++||+|++|+++|+++..++.............  ......  .+..+.  ....+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKK--LLGKK   79 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHH--HcCCC
Confidence            467899999999999999999999999999889999999999998865422110000  000000  000000  00001


Q ss_pred             cc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          356 LG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       356 ~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      +. +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            22 5667788999999999999999999999999999 5 999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.46  E-value=7.6e-13  Score=125.87  Aligned_cols=120  Identities=13%  Similarity=0.361  Sum_probs=100.8

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  .+.++..++++.++++.+.+++++++||++++ ++++|+++.+|++.....+..      ..++.+    
T Consensus        68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~----  137 (292)
T PRK15094         68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK----  137 (292)
T ss_pred             EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence            56777887  68999999999999999999999999999865 799999999999864431110      123444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|. ++.++++++++.++++.|.+++.+.++|+| +.|.++|+||+.||++.|+|
T Consensus       138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence                     333 455899999999999999999999999999 68899999999999999986

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.46  E-value=2.3e-12  Score=133.85  Aligned_cols=195  Identities=18%  Similarity=0.181  Sum_probs=135.0

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc----
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP----  260 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~----  260 (413)
                      ++|.++++++++++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+.+.+.......  .......+    
T Consensus        72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i  143 (546)
T PRK14869         72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENI  143 (546)
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHH
Confidence            467889999999999999999999999999999975   45   8999999999998765432100  00000111    


Q ss_pred             ------------------cccccccccc-ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---------
Q 015103          261 ------------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDN---------  311 (413)
Q Consensus       261 ------------------i~~l~i~~~~-~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------  311 (413)
                                        ...+.++... ..+.+.+.+. ++.+...   .++...+.+.+++++.|+...         
T Consensus       144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence                              1111111110 1122234443 4444333   344556788899999888642         


Q ss_pred             ---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEE
Q 015103          312 ---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRL  387 (413)
Q Consensus       312 ---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l  387 (413)
                         ..+.++.|..|.......-.      ...++++             +|+ +++.++++++++.++.+.|.+++.+++
T Consensus       221 a~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  281 (546)
T PRK14869        221 AKENGVTVISTPYDTFTTARLIN------QSIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSY  281 (546)
T ss_pred             HHhCCCeEEEecccHHHHHHHhh------cCCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence               24677777777666443110      0234555             777 789999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEehHHHHHHh
Q 015103          388 VIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       388 ~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      |||| ++|+++|+||+.|+++..
T Consensus       282 PVvd-~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        282 PVVD-EDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             EEEc-CCCCEEEEEEHHHhhccc
Confidence            9999 589999999999999753

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.46  E-value=3.5e-12  Score=129.98  Aligned_cols=221  Identities=17%  Similarity=0.225  Sum_probs=150.0

Q ss_pred             eeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103          120 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  196 (413)
Q Consensus       120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~  196 (413)
                      ..|+..+.    .+.+|..++...+.+.+..+   .+++.++..+    ..+..+.          .++.|..+++++.+
T Consensus        41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~----~I~~vk~----------~~dim~~~~v~i~~  102 (486)
T PRK05567         41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAE----EVRKVKR----------SESGVVTDPVTVTP  102 (486)
T ss_pred             CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHH----HHHHhhh----------hhhcccCCCeEeCC
Confidence            47888753    24468888888876655322   2233332211    1111111          12367889999999


Q ss_pred             CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103          197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  276 (413)
Q Consensus       197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~  276 (413)
                      ++++.+|+++|.+++++++||+++   .+   +++|++|.+|+....            ...            ..+.++
T Consensus       103 ~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~------------~~~------------~~V~di  152 (486)
T PRK05567        103 DTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET------------DLS------------QPVSEV  152 (486)
T ss_pred             CCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc------------cCC------------CcHHHH
Confidence            999999999999999999999974   45   899999999986410            011            134455


Q ss_pred             CC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103          277 NG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  355 (413)
Q Consensus       277 m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  355 (413)
                      |. ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|++............-..+.+..           
T Consensus       153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a-----------  221 (486)
T PRK05567        153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA-----------  221 (486)
T ss_pred             cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe-----------
Confidence            76 688999999999999999999999999999999999999999999986431100000000011111           


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                        .|     ...+  .-.+.++.|.+.+++. +++|..+|+..|+++..+.++.
T Consensus       222 --ai-----~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 --AV-----GVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             --ec-----ccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence              11     1222  2277888899999994 5777446888888877766654

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.45  E-value=8.4e-13  Score=133.02  Aligned_cols=116  Identities=15%  Similarity=0.231  Sum_probs=101.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      ++.++|.++++++.+++++.++++.|.+++++.+||+|++++++|++|.+|+....       .   ..++.+       
T Consensus        90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~-------~---~~~V~d-------  152 (479)
T PRK07807         90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD-------R---FTQVRD-------  152 (479)
T ss_pred             ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc-------c---CCCHHH-------
Confidence            34566888999999999999999999999999999999999999999999985421       0   134555       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|..+++++++++++.+|++.|.+++.+++||+| ++++++|+||++||+++..
T Consensus       153 ------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        153 ------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             ------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence                  6677899999999999999999999999999999 5899999999999998753

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.45  E-value=1.2e-12  Score=110.22  Aligned_cols=116  Identities=22%  Similarity=0.365  Sum_probs=93.1

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh------hcc------------cCcc
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QIH------------LDEM  340 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~------~~~------------l~~~  340 (413)
                      +++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+......+...      ...            ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            3577899999999999999999999999999889999999999998754322100      000            0011


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ++.+             +|..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||+.|++++
T Consensus        82 ~v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          82 KVAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             CHHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            2222             5666789999999999999999999999999999  5899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.4e-12  Score=108.41  Aligned_cols=115  Identities=21%  Similarity=0.382  Sum_probs=87.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhhh-cccCcccHHHHHhcCCCCCCCcc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQ-IHLDEMNIHQALQLGQDANPSLG  357 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~-~~~~~~-~~l~~~~v~~~l~~~~~~~~~~~  357 (413)
                      ++.++..++++.++++.|.+++...+||+|++|+++|+++..|+..... ...... ....+.++.+             
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~-------------   68 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVAD-------------   68 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHH-------------
Confidence            4668899999999999999899999999998899999999999986210 000000 0111234555             


Q ss_pred             cCCCcceE--E----eCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 015103          358 FNGQRCQM--C----LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR  408 (413)
Q Consensus       358 ~m~~~~~~--v----~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~  408 (413)
                      +|.++...  +    .+++++.++++.|.+++.+++||+| ++ |+++|+||++||++
T Consensus        69 im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~  125 (126)
T cd04640          69 VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR  125 (126)
T ss_pred             hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence            44333333  2    3689999999999999999999999 45 79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.45  E-value=1.4e-12  Score=105.99  Aligned_cols=109  Identities=15%  Similarity=0.192  Sum_probs=90.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++....   .      ...           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~-----------   55 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YET-----------   55 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------ccc-----------
Confidence            3578899999999999999999999999965   45   89999999999872100   0      001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        56 -~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          56 -LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             -cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence             1244557778889999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.45  E-value=2.5e-12  Score=103.85  Aligned_cols=108  Identities=24%  Similarity=0.373  Sum_probs=91.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+++++||+++ |+++|+++..|+++....+..      ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence            5678899999999999999999999999997 999999999999886543211      134555             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||+.|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence            45788999999999999999999999999999 4789999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.45  E-value=5.4e-13  Score=131.43  Aligned_cols=121  Identities=25%  Similarity=0.377  Sum_probs=106.7

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhhhcccCcccHHHHHhcC
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~-~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      .++++++..+++++++.+++.+|...|.+.|++++.++++++..+||+|++|+....- ++...     ..+|++     
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e-----  218 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE-----  218 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence            4678889999999999999999999999999999999999999999999999998543 22111     245555     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                              +|+.|++++..++.+.+|+-+|.+++++++||++  +|+++|+||.+||++.+-
T Consensus       219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence                    8999999999999999999999999999999998  599999999999999864

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2e-12  Score=106.89  Aligned_cols=120  Identities=18%  Similarity=0.243  Sum_probs=92.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|.+++++++||+|+  .+|   +++|+++.+|+++++.................         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~---------   67 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIP---------   67 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhh---------
Confidence            5778999999999999999999999999975  225   79999999999987654321100000000000         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  324 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~  324 (413)
                       ....+.|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.
T Consensus        68 -~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          68 -LRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             -hhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence             011234667889999999999999999999999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.44  E-value=2.8e-12  Score=103.74  Aligned_cols=108  Identities=16%  Similarity=0.359  Sum_probs=90.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.+++++.+|++.|.+.+.+.+||++++ |+++|+++..++.+....+..      ..++..             +
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence            46789999999999999999999999999987 999999999999986643221      123333             2


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      + .++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||++|+++
T Consensus        63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE  110 (111)
T ss_pred             h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence            2 2577899999999999999999999999999 5799999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.44  E-value=2.5e-12  Score=103.89  Aligned_cols=110  Identities=24%  Similarity=0.358  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+...     ..++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence            5678999999999999999989999999997 9999999999998755422110     123333             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++..++++.++++.|.+++.+.+||+| ++|+++|+||..||+++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  111 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence            56789999999999999999999999999999 47999999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.4e-12  Score=105.03  Aligned_cols=111  Identities=17%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccc
Q 015103          191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  270 (413)
Q Consensus       191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~  270 (413)
                      +.++.+++++.+|++.|.+++...+||+|+   +|   +++|+++.+++++.+......      ...            
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------   58 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------   58 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence            567899999999999999999999999975   45   899999999998754321000      001            


Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ..+.++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|++.
T Consensus        59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            2344557788999999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.44  E-value=2.3e-12  Score=104.56  Aligned_cols=112  Identities=15%  Similarity=0.293  Sum_probs=93.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++..+......    ....++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence            45678999999999999988889999999988999999999999986653221    11234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..+..++.+++++.++++.|..++.+.+||++ ++|+++|+||..||+++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~iG~it~~di~~~  114 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVD-DNGRPVGVLHIHDLLRA  114 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCCEEEEEEHHHhhcC
Confidence            55678999999999999999999999999999 47999999999999863

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.9e-12  Score=106.51  Aligned_cols=114  Identities=16%  Similarity=0.346  Sum_probs=91.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh------cccCcccHHHHHhcCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~------~~l~~~~v~~~l~~~~~~~  353 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++...........      ..+...++.+         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD---------   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence            4678899999999999999999999999996 99999999999987544211100      0011223333         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                          +|..+..++.+++++.++++.|.+.+.+.+||+| + |+++|+||..|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                5566788999999999999999999999999999 5 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.43  E-value=7.2e-13  Score=137.51  Aligned_cols=284  Identities=14%  Similarity=0.160  Sum_probs=176.7

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhh--c
Q 015103           85 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET--H  162 (413)
Q Consensus        85 ~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~--~  162 (413)
                      .++.|+|-  .++++++.+.++.+|++.|.++++..+||.|.+ ++++|++|..|+...+......      +.+..  .
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~~~~~~  138 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EILSKSPT  138 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhhhhcCC
Confidence            57888884  469999999999999999999999999999976 5699999999999866543210      01111  0


Q ss_pred             cHHHHHHHHHhhhcccc------C----C---------CCCCCCC-CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCC
Q 015103          163 TISAWKVGKLQLNLKRQ------M----D---------GNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG  222 (413)
Q Consensus       163 ~i~~~~~~~~~~~~~~~------~----~---------~~~~~~~-~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~  222 (413)
                      ++..+.   ..++....      .    .         .....+. ..++.+.....   ....+.+.+++.++|.....
T Consensus       139 t~~~i~---~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~~~lIlt~g~~  212 (546)
T PRK14869        139 SLENII---RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGVRLLIITGGAP  212 (546)
T ss_pred             CHHHHH---HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCCCEEEECCCCC
Confidence            111111   11110000      0    0         0000122 23555543333   34456788899998885422


Q ss_pred             CCC------CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHH
Q 015103          223 PAG------SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALA  295 (413)
Q Consensus       223 ~~g------~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~  295 (413)
                      -..      ....+.++.|..|.........         .            ...++++|+ +++.++++++++.++.+
T Consensus       213 ~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~------------~~~V~~iM~~~~~~~~~~~~~~~~~~~  271 (546)
T PRK14869        213 VSEDVLELAKENGVTVISTPYDTFTTARLIN---------Q------------SIPVSYIMTTEDLVTFSKDDYLEDVKE  271 (546)
T ss_pred             CCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------c------------CCCHHHhccCCCcEEECCCCcHHHHHH
Confidence            000      0014778888888776543311         0            124566798 88999999999999999


Q ss_pred             HHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH---HhcCC----CCCCCcc-cCCCcceEE-
Q 015103          296 LLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA---LQLGQ----DANPSLG-FNGQRCQMC-  366 (413)
Q Consensus       296 ~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~---l~~~~----~~~~~~~-~m~~~~~~v-  366 (413)
                      .|.+++.+.+||+|++|+++|++|++|++.........   ++.....+.   +....    -...+.+ +++..++.+ 
T Consensus       272 ~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL---VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~  348 (546)
T PRK14869        272 VMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL---VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFR  348 (546)
T ss_pred             HHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE---EcCccccccccchhhceEEEEecCCccCCCCCCCCcEEE
Confidence            99999999999999999999999999999854421100   000000000   00000    0001122 454444433 


Q ss_pred             --eCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          367 --LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       367 --~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                        +...+..-+.+.|.+.++...+++.  +.-+.||+|-++.+++
T Consensus       349 ~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        349 NEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS  391 (546)
T ss_pred             eeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence              3457777888999999988777776  3568888888877653

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.43  E-value=4e-12  Score=102.92  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=91.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      +++++.+++++.++++.|.+.+...++|+|+ |+++|+++..++......+...    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence            4567899999999999999999999999997 8999999999998755422111    1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||..|++++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence            55788999999999999999999999999998 3 899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.43  E-value=4.2e-12  Score=102.17  Aligned_cols=106  Identities=19%  Similarity=0.306  Sum_probs=90.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.++.++.++++.|.+++...+||+|++|+++|+++..|+......         ..++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence            46678999999999999999999999999988999999999999874321         123444             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ...+.++++++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence            45688999999999999999999999999999 5789999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.43  E-value=4.3e-12  Score=102.52  Aligned_cols=108  Identities=23%  Similarity=0.449  Sum_probs=92.1

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      +++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+......+.      ...++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~   61 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------Y   61 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------H
Confidence            35778999999999999999889999999997 99999999999987553221      1345665             4


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      |..++.++.+++++.++++.|.+++.+.+||+|  +|+++|+||+.|+++
T Consensus        62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            455788999999999999999999999999998  589999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=3.9e-12  Score=102.92  Aligned_cols=109  Identities=20%  Similarity=0.333  Sum_probs=90.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..++..........    .+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence            5678899999999999999989999999997 9999999999998743321110    1234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..+++++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            45788999999999999999999999999999 4 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.43  E-value=8.6e-12  Score=125.73  Aligned_cols=206  Identities=12%  Similarity=0.125  Sum_probs=141.7

Q ss_pred             CeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeC
Q 015103          119 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  195 (413)
Q Consensus       119 ~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  195 (413)
                      ..+|++.+.    ..-+|..++...+.+.+.-+   .+++.+        .+.+......       +.++|..+++++.
T Consensus        43 l~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VK-------v~~iMi~~pvtv~  103 (479)
T PRK07807         43 TTIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVK-------SRDLVFDTPVTLS  103 (479)
T ss_pred             cccceeecC----CcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhcc-------cccccccCCeEEC
Confidence            457887643    34567777777777665211   233322        2222222111       2346889999999


Q ss_pred             CCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc
Q 015103          196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  275 (413)
Q Consensus       196 ~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~  275 (413)
                      +++++.+|+++|.+++++.+||+|+   ++   +++|++|.+|+...            . ..            ..+.+
T Consensus       104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~------------~-~~------------~~V~d  152 (479)
T PRK07807        104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV------------D-RF------------TQVRD  152 (479)
T ss_pred             CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC------------c-cC------------CCHHH
Confidence            9999999999999999999999964   45   89999999998430            0 01            12456


Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103          276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  355 (413)
Q Consensus       276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  355 (413)
                      +|.++++++.+++++.+|+++|.++++..+||+|++|+++|+||++||++........... ....+..+          
T Consensus       153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~aa----------  221 (479)
T PRK07807        153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAAA----------  221 (479)
T ss_pred             hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHhh----------
Confidence            6888999999999999999999999999999999889999999999999865533111000 01222221          


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 015103          356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR  396 (413)
Q Consensus       356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~  396 (413)
                              .  .......+.++.|.+.+++. .++|..+|.
T Consensus       222 --------v--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        222 --------V--GINGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             --------h--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                    1  12234667788888888886 567744444

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.4e-12  Score=104.05  Aligned_cols=111  Identities=18%  Similarity=0.313  Sum_probs=88.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.++.++.++++.|.+++ ...++|+| +|+++|+++..|++.....+..    ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence            4567899999999999998888 66777777 6999999999999875542211    11234555             4


Q ss_pred             CCCcceEEeCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          359 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       359 m~~~~~~v~~~--~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      |..++.++.++  +++.++++.|.+++.+.+||+| ++|+++|+||++|++++
T Consensus        64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV  115 (115)
T ss_pred             cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence            45567788877  7999999999999999999999 57999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=2.6e-12  Score=104.19  Aligned_cols=111  Identities=17%  Similarity=0.302  Sum_probs=90.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++........   .....++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------i~   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVER-------------VM   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHH-------------hc
Confidence            4667899999999999999999999999997 999999999999853321111   000134554             55


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|..++.+++||++ ++|+++|+||..|++.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence            56788999999999999999999999999999 4799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.43  E-value=2.6e-12  Score=106.13  Aligned_cols=122  Identities=19%  Similarity=0.358  Sum_probs=95.8

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.+++++.++++.|.+++++++||+++   .|   +++|+++.+++++++......  .....+.       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence            46889999999999999999999999999965   35   899999999998765422110  0000000       011


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ....++++|.+.+.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|++.
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            122456668888999999999999999999999999999998999999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.43  E-value=4.6e-12  Score=102.33  Aligned_cols=109  Identities=22%  Similarity=0.307  Sum_probs=92.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+..     .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence            4567899999999999999989999999986 999999999999886543221     1345555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||.+||++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence            55788999999999999999999999999999 5799999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.3e-12  Score=105.83  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=90.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|..++...+||+|+   +|   +++|+++..++++...... .      ...           
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~-----------   57 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK-----------   57 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----------
Confidence            5788999999999999999999999999975   45   7999999999988553210 0      001           


Q ss_pred             cccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~  325 (413)
                       ..++++|.+  ++.++.+++++.+++++|.+++++.+||+|++   |+++|++|.+|+.+
T Consensus        58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence             123344653  68899999999999999999999999999876   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.42  E-value=3.3e-12  Score=104.84  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=92.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc------cCcccHHHHHhcCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN  353 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~------l~~~~v~~~l~~~~~~~  353 (413)
                      ++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..++.............      ....++.+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence            4667899999999999999999999999997 9999999999998855321110000      00122222         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                          +|.+++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||+++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA  122 (122)
T ss_pred             ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence                5666788999999999999999999999999999 57999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=5.8e-12  Score=102.05  Aligned_cols=111  Identities=14%  Similarity=0.279  Sum_probs=89.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++..|+.+........   +.+.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~~   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAG---VLDTTVRA-------------IM   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCc---hhcCCHHH-------------Hh
Confidence            356789999999999999888888887776 59999999999998755421100   11234555             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|..++..++||+|  +|+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence            45678999999999999999999999999999  4899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.41  E-value=2.5e-12  Score=134.23  Aligned_cols=123  Identities=18%  Similarity=0.232  Sum_probs=103.5

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|+++..++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.......    ..+.++.+       
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d-------  516 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD-------  516 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence            5778899999999999999999999999999999999999999999999999874432111    00234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~-~~liGvIS~~DIl~~l~  411 (413)
                            +|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++++.
T Consensus       517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                  5666788999999999999999999999999999422 58999999999999875

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6.3e-12  Score=102.37  Aligned_cols=112  Identities=16%  Similarity=0.269  Sum_probs=91.8

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.+|++.|.+++.+.+||+++  ..|   +++|+++.+|+++++......      ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~-----------   59 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDR-----------   59 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCc-----------
Confidence            5788999999999999999999999999975  115   799999999999865431100      001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|+++..|++.
T Consensus        60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          60 -VNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             -cCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence             1344557778999999999999999999999999999986 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.41  E-value=2.6e-12  Score=103.77  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=86.6

Q ss_pred             ecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          284 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       284 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.++++...       .   +.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~---~~~v~~-------------~   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------P---DTPVSD-------------I   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------C---cchHHH-------------H
Confidence            567889999999998777     47899999889999999999987520       0   234555             3


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      +..++.++.+++++.++++.|..++.+.+||+| ++|+++|+||..|+++++
T Consensus        59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence            445688999999999999999999999999999 579999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.40  E-value=4.2e-12  Score=126.50  Aligned_cols=118  Identities=12%  Similarity=0.244  Sum_probs=100.9

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|++  ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++.....+        ...+.+    
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~----  259 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS----  259 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence            57788986  78999999999999999999999999999863 6999999999998644311        123444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|. ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..||++.++|
T Consensus       260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                     232 578999999999999999999999999999 68999999999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=7.6e-12  Score=101.44  Aligned_cols=111  Identities=23%  Similarity=0.380  Sum_probs=90.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..+++. ....+..    ....++.+             +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence            4678999999999999999999999999997 99999999999873 3322111    11123444             5


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      |...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus        64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  113 (113)
T cd04622          64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA  113 (113)
T ss_pred             ccCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence            556788999999999999999999999999999 47999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=1.1e-11  Score=100.32  Aligned_cols=110  Identities=15%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|++.....+....   .+.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence            4667899999999999999999999999985 59999999999998543221100   1234555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|.+++.+.+||+| ++ +++|+||+.|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~-~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVD-DD-ELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEee-CC-EEEEEEEhhhhhc
Confidence            55788999999999999999999999999999 34 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.39  E-value=2.4e-11  Score=122.40  Aligned_cols=159  Identities=16%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             eeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103          120 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  196 (413)
Q Consensus       120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~  196 (413)
                      .+|++.+.    .--+|.....-.+.+.+.-+   .++        ++..|.+......       +.+.|.++++++.+
T Consensus        43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p  103 (475)
T TIGR01303        43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP  103 (475)
T ss_pred             ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence            46777653    23356666666565554321   233        3344443333211       12357788999999


Q ss_pred             CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103          197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  276 (413)
Q Consensus       197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~  276 (413)
                      ++++.+|+++|.+++++.+||+|+    +   +++|++|.+|+...            . ..            ..+.++
T Consensus       104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------------~-~~------------~~V~dI  151 (475)
T TIGR01303       104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------------D-RF------------TQVRDI  151 (475)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------------C-CC------------CCHHHH
Confidence            999999999999999999999863    4   79999999998420            0 01            134556


Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      |+.+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus       152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence            88899999999999999999999999999999988999999999999986553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=6.3e-12  Score=103.58  Aligned_cols=115  Identities=14%  Similarity=0.192  Sum_probs=91.6

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh-hc-----ccCcccHHHHHhcCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~-~~-----~l~~~~v~~~l~~~~~~~  353 (413)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..++.+........ ..     .....++.+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ---------   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence            4678899999999999999999999999996 9999999999998754321100 00     000112333         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                          +|..+++++.+++++.++++.|.+++...+||+| ++|+++|++|+.|++++
T Consensus        72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~  122 (122)
T cd04637          72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY  122 (122)
T ss_pred             ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence                4556788999999999999999999999999999 57999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.39  E-value=9.3e-12  Score=101.45  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=87.9

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  356 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  356 (413)
                      ++.++.+++++.++++.|.+++.+.+||+|+   +|+++|+++..|+..... .        ..++.+            
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence            4668899999999999999889999999997   789999999999865321 0        123555            


Q ss_pred             ccCCCcceEEeC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          357 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       357 ~~m~~~~~~v~~--~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                       +|.....++..  ++++.++++.|.+++.+.+||+| ++|+++|+||+.||++
T Consensus        62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence             44445666766  99999999999999999999999 5899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.38  E-value=9.1e-12  Score=100.31  Aligned_cols=109  Identities=19%  Similarity=0.366  Sum_probs=88.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++.+.+||+|+ |+++|+++..|+.+........ .   +.++.+             +|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence            4568899999999999999999999999997 9999999999999865422110 0   234555             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++++++++.+++++|.+ .. .+||++ ++|+++|+||++||++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence            4567889999999999999988 33 478888 57999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.38  E-value=1e-11  Score=99.31  Aligned_cols=103  Identities=16%  Similarity=0.276  Sum_probs=88.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence            466789999999999999999999999998 699999999999976321          123444             44


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.+++++.++++.|.+++...+||+| + |+++|+||..|++.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            45788999999999999999999999999999 4 99999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.37  E-value=8.7e-12  Score=100.06  Aligned_cols=105  Identities=16%  Similarity=0.332  Sum_probs=89.5

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++...    .      +.++.+             +|
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----~------~~~~~~-------------~~   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----P------DETVEE-------------IM   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----c------cccHHH-------------hC
Confidence            5678899999999999998888889999986 9999999999987521    0      234555             45


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+++.+++||++ ++|+++|+|+..||+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~  107 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS  107 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence            55688999999999999999999999999999 57999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=6.9e-12  Score=101.10  Aligned_cols=106  Identities=20%  Similarity=0.387  Sum_probs=88.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++..++++.++++.|.+.+.+.+||+|++|+++|+++..++.....         .+.++.+             +|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~-------------~~   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSE-------------VM   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHH-------------hc
Confidence            5678899999999999999999999999998899999999999864211         0235555             34


Q ss_pred             CCcceEEeC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~-~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++.. ++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            344566666 99999999999999999999999 5799999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.37  E-value=1.3e-11  Score=101.45  Aligned_cols=115  Identities=20%  Similarity=0.328  Sum_probs=92.2

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh-----cccCcccHHHHHhcCCCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-----IHLDEMNIHQALQLGQDANP  354 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~-----~~l~~~~v~~~l~~~~~~~~  354 (413)
                      ++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..++...........     ......++.+          
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence            4678899999999999999999999999998899999999999987543211000     0011234444          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                         +|..++.++..++++.++++.|.+++...+||+| + |+++|++|..||+++
T Consensus        72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~~  121 (121)
T cd04584          72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLRT  121 (121)
T ss_pred             ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhcC
Confidence               4455788999999999999999999999999999 4 899999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.37  E-value=4.3e-11  Score=117.43  Aligned_cols=196  Identities=17%  Similarity=0.169  Sum_probs=146.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhhhc
Q 015103           97 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  176 (413)
Q Consensus        97 vv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~  176 (413)
                      .+.+.+..++.+|...|.++++..+||.|.+.++..+++|..-++..+.......   ....+-..++...         
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl---------  231 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL---------  231 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh---------
Confidence            4899999999999999999999999999988889999999999998876554322   1122222222221         


Q ss_pred             cccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccc
Q 015103          177 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  256 (413)
Q Consensus       177 ~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~  256 (413)
                           +.  .....+..+..++++.+|++.|..++++.+||++.   .|   +.+|..+..|+........-      ..
T Consensus       232 -----~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~  292 (381)
T KOG1764|consen  232 -----GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN  292 (381)
T ss_pred             -----Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence                 01  12346899999999999999999999999999976   45   56999999999875543211      11


Q ss_pred             cccc-ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          257 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       257 ~~~~-i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      +... ++.     +. .........+++++++.++.+++..|..++++++.|||++|.++|++|..|++..+..
T Consensus       293 ~~~~~l~~-----~~-~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  293 LDLSCLSE-----AL-SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             cchhHHHH-----Hh-hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence            1111 111     10 0111122358999999999999999999999999999999999999999999996653

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.6e-11  Score=99.37  Aligned_cols=111  Identities=20%  Similarity=0.359  Sum_probs=91.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.++.++.+|++.|.+++++++||+++   ++   +++|+++.+++++++......      ...           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~-----------   58 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALD-----------   58 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc-----------
Confidence            5678899999999999999999999999965   35   899999999999866432110      001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       .++.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence             1344557778899999999999999999999999999986 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.36  E-value=1.8e-11  Score=98.84  Aligned_cols=108  Identities=21%  Similarity=0.428  Sum_probs=91.2

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++.+.+++++.+|++.|.+++...+||+++   +|   +++|+++.+++++.+....           .         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~---------   55 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------K---------   55 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------c---------
Confidence            46788999999999999999999999999965   45   8999999999987543210           0         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|++++.|+.+
T Consensus        56 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 ---SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ---CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence               123446678889999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.5e-11  Score=97.37  Aligned_cols=94  Identities=13%  Similarity=0.238  Sum_probs=83.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++.+|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5678999999999999999999999999964   45   899999999997610                          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                                .+.++.+++++.+++++|.+++.+.+||+|++|+++|++|++|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1568899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.36  E-value=1.6e-11  Score=98.35  Aligned_cols=104  Identities=13%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.++.++.+|++.|.+++.+.+||+++   +|   +++|+++..|+++...              .          
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~----------   51 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------G----------   51 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------c----------
Confidence            4678899999999999999999999999964   45   8999999999986210              1          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .++++|.+.+..+.+++++.++++.|.+++.+.+||+|++|+++|++++++++.
T Consensus        52 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 --CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             --chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence              123346667788999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.36  E-value=1.3e-11  Score=98.81  Aligned_cols=100  Identities=15%  Similarity=0.257  Sum_probs=85.7

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCC
Q 015103          282 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ  361 (413)
Q Consensus       282 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~  361 (413)
                      +++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++.....           .++.+             +|..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence            46889999999999999999999999997 99999999999876321           12333             3445


Q ss_pred             cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          362 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       362 ~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      .+.++.+++++.++++.|.+++...+||+|  +|+++|+||..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            678999999999999999999999999998  489999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.2e-11  Score=97.72  Aligned_cols=112  Identities=22%  Similarity=0.439  Sum_probs=92.1

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++..++++.++++.|.+++.+.+||++++++++|+++..++............    ..+.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence            45678899999999999999999999999988999999999999886643221110    11333             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..++.++.+++++.++++.|.+.+.+.++|+| ++|+++|++|..|++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~~  113 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILRA  113 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhcC
Confidence            45788899999999999999999999999999 57999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.5e-11  Score=99.49  Aligned_cols=109  Identities=19%  Similarity=0.396  Sum_probs=91.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|.+.+...+||+++   +|   +++|+++..++.+++....         ...          
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~----------   56 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDA----------   56 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCC----------
Confidence            4678899999999999999889999999965   45   8999999999988654211         011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus        57 --~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          57 --PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             --cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence              233447778899999999999999999999999999997799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.3e-11  Score=101.65  Aligned_cols=120  Identities=20%  Similarity=0.415  Sum_probs=94.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..++++++........      ......    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------~~~~~~----~~   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG------EESLTK----ER   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc------cccccc----cc
Confidence            5678999999999999999999999999965   45   89999999999986643221100      000000    01


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|++.
T Consensus        66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            12345567788899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.5e-11  Score=102.20  Aligned_cols=123  Identities=16%  Similarity=0.264  Sum_probs=91.8

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc-cccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI-QLGT  268 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l-~i~~  268 (413)
                      .++++++++++.+|++.|.++++..+||+|+   .|   +++|+++..|+++........       ...+.... .+..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-------~~~~~~~~~~~~~   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDL-------LLYRTITFKELSE   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchh-------hcccchhhhhhhh
Confidence            4678999999999999999999999999965   45   899999999998855321100       00000000 0000


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ......+.+.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            001122346678899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.35  E-value=2.2e-11  Score=98.98  Aligned_cols=110  Identities=19%  Similarity=0.303  Sum_probs=90.9

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ..+++.+++++.+|++.|.+++.+.++|+++   +|   +++|+++.+|+++.+.....        ..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~-----------   57 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LD-----------   57 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cC-----------
Confidence            3567899999999999999999999999965   45   89999999999875432110        01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus        58 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          58 -DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence             1234557778889999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.35  E-value=1.3e-11  Score=100.55  Aligned_cols=109  Identities=14%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++.++.+++++.+|++.|.+++ .+.+||+|+   +|   +++|+++.+|+++......         ...         
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~---------   57 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQT---------   57 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------ccc---------
Confidence            5778999999999999997775 889999965   45   7999999999988543210         011         


Q ss_pred             ccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .+.++|..  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        58 ---~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          58 ---TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             ---chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence               12333542  3568999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.34  E-value=1.8e-11  Score=98.69  Aligned_cols=105  Identities=18%  Similarity=0.263  Sum_probs=89.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|+..|.+++.+.+||+++   +|   +++|+++..+++...             ...          
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~----------   53 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDT----------   53 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------ccc----------
Confidence            5788999999999999999999999999965   45   899999999997510             011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        54 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          54 --TIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             --cHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence              233447677889999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.34  E-value=6.5e-12  Score=104.33  Aligned_cols=113  Identities=15%  Similarity=0.225  Sum_probs=91.6

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.+++++.+|++.|.+++++.+||+++   +|   +++|+++.+++++.+......       ..          
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~----------   58 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS----------   58 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence            36788999999999999999999999999965   45   799999999998755432110       11          


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHH---------hCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                        .+++++|.+++.++.+++++.++.+++.         +.+...+||++++|+++|++|++|++.+
T Consensus        59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence              2456669999999999999999999653         3367788899888999999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=1e-11  Score=125.98  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcc
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG  357 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~  357 (413)
                      .+++.+++++.+|+++|.+++++.+||+|+   +|+++|++|..|+....  .      ..+.++.+             
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d-------------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD-------------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence            358999999999999999999999999996   58999999999986421  0      11356776             


Q ss_pred             cCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          358 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       358 ~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      +|++  +++++.+++++.+|++.|.+++++.||||| ++++++|+||+.||++.
T Consensus       166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence            5554  688999999999999999999999999999 58999999999999885

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.34  E-value=3.5e-11  Score=98.08  Aligned_cols=111  Identities=24%  Similarity=0.428  Sum_probs=93.5

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  356 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  356 (413)
                      |.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+....     .++.+            
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence            446788999999999999999999999999997 348999999999999765332211     02444            


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 015103          357 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF  407 (413)
Q Consensus       357 ~~m~~~~~~v~~~~sl~~~~~~m~~-~~~~~l~VVd~~~~-~liGvIS~~DIl  407 (413)
                       +|..++.++.+++++.++++.|.. ++++++||++ +++ +++|++|.+|++
T Consensus        67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~-~~~~~lvGivt~~di~  117 (117)
T COG0517          67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVD-DDGGKLVGIITLSDIL  117 (117)
T ss_pred             -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE-CCCCeEEEEEEHHHcC
Confidence             666688999999999999999999 7999999999 465 999999999974

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.7e-11  Score=99.80  Aligned_cols=114  Identities=18%  Similarity=0.285  Sum_probs=90.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|+++.+++++++......     ...     .+    +
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~-----~~~-----~~----~   61 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENL-----DLE-----RL----V   61 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCch-----hHH-----HH----h
Confidence            4788999999999999999999999999964   45   899999999999876432111     000     00    0


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.+++.++.+++++.+|++.|.+.+  .+||+|++|+++|++|.+|++.
T Consensus        62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            12345568888999999999999999998754  5999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=3.2e-11  Score=97.62  Aligned_cols=110  Identities=19%  Similarity=0.361  Sum_probs=91.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.+|++.|.+.+.+.+||+++   +|   +++|+++..++++++.....        ..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~-----------   56 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LD-----------   56 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Cc-----------
Confidence            4678999999999999999999999999965   35   89999999999886543210        01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        57 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          57 -TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             -cCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence             1233457778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.34  E-value=2.9e-11  Score=98.56  Aligned_cols=111  Identities=18%  Similarity=0.368  Sum_probs=91.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.+|++.|.+.+.+.+||+|+   .|   +++|+++.+|+++.+......       ..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~-----------   57 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EP-----------   57 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------cc-----------
Confidence            4568899999999999999999999999965   45   899999999998855321100       00           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~  325 (413)
                       ..+.++|.+++.++.+++++.+++++|.+++...+||+|++  |+++|++|.+|++.
T Consensus        58 -~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 -SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             -ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence             11334577788999999999999999999999999999876  79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.33  E-value=1e-11  Score=120.51  Aligned_cols=118  Identities=15%  Similarity=0.173  Sum_probs=99.3

Q ss_pred             CCCCCCCC--cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~~~--~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.++  ++++++++++.+|++.|.+++...+||+|+   +|   +++|+++..|+.+.+....        .    
T Consensus       199 V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~----  260 (321)
T PRK11543        199 VHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------A----  260 (321)
T ss_pred             HHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------C----
Confidence            34568887  999999999999999999999999999975   56   8999999999987543210        0    


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                              ....++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|++++
T Consensus       261 --------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        261 --------LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             --------cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                    0123556688899999999999999999999999999999988999999999999863

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.33  E-value=2e-11  Score=124.02  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=96.5

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~  353 (413)
                      |.++++++.+++++.+++++|.+++++.+||+|+   +|+++|++|.+|+.....         .+.++.+         
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e---------  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE---------  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence            5678899999999999999999999999999986   489999999999965321         1356776         


Q ss_pred             CCcccCCCc--ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          354 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       354 ~~~~~m~~~--~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                          +|.++  ++++.+++++.+|++.|.+++.+.+|||| ++++++|+||++||++++
T Consensus       168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence                45444  78999999999999999999999999999 589999999999999886

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.33  E-value=1.3e-11  Score=116.51  Aligned_cols=113  Identities=17%  Similarity=0.292  Sum_probs=96.4

Q ss_pred             ccccccCCCC-ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          271 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       271 ~~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      .+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+..     .+.++.+     
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~-----  224 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD-----  224 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence            3677889888 9999999999999999999999999999988999999999999885432111     1245665     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  402 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS  402 (413)
                              +|.+++.++.+++++.+|++.|.+.+.+++||+| ++|+++|+|+
T Consensus       225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~  268 (268)
T TIGR00393       225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH  268 (268)
T ss_pred             --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence                    5666788999999999999999999999999999 5789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.33  E-value=1.4e-11  Score=124.06  Aligned_cols=114  Identities=12%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103          273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  352 (413)
Q Consensus       273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~  352 (413)
                      +.++|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+....       .   ..++.+        
T Consensus        90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d--------  150 (475)
T TIGR01303        90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD--------  150 (475)
T ss_pred             hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH--------
Confidence            3455777889999999999999999999999999998 57999999999984321       0   134555        


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                           +|+.+++++.+++++.+|++.|.+++++++|||| ++|+++|+||.+||+++..
T Consensus       151 -----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       151 -----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRATI  203 (475)
T ss_pred             -----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHHh
Confidence                 6777899999999999999999999999999999 5899999999999998653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=3.3e-11  Score=97.78  Aligned_cols=111  Identities=19%  Similarity=0.349  Sum_probs=92.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.++++.|.+.+.+.+||+++   +|   +++|+++..++++++......       ..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~-----------   58 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT-----------   58 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence            4667899999999999998888999999975   45   899999999999866432211       00           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|.++..++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence             1244557778889999999999999999999999999998899999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.32  E-value=1.8e-11  Score=123.44  Aligned_cols=114  Identities=17%  Similarity=0.318  Sum_probs=98.3

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103          274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      ++.|.+++.++.+++++.+++++|.+++++++||+|++   ++++|+++.+|+.....         .+.++.+      
T Consensus        83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d------  147 (450)
T TIGR01302        83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE------  147 (450)
T ss_pred             cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH------
Confidence            34466788999999999999999999999999999987   79999999999975321         0245666      


Q ss_pred             CCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          351 DANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       351 ~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                             +|. .+++++++++++.++++.|.+++.+.+||+| ++|+++|+||+.||++.+
T Consensus       148 -------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       148 -------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             -------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                   555 3788999999999999999999999999999 689999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.1e-11  Score=102.01  Aligned_cols=126  Identities=19%  Similarity=0.301  Sum_probs=92.0

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhc------ccCcccHHHHHhc----
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL----  348 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~------~l~~~~v~~~l~~----  348 (413)
                      +++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ...      .....++.++++.    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            4678999999999999999999999999997 999999999999886542210 000      0000111111000    


Q ss_pred             ---CCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          349 ---GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       349 ---~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                         ......++. +|..++.++..++++.+++..|.+.+.+++||++ + |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence               000011122 5667889999999999999999999999999999 4 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.4e-11  Score=99.54  Aligned_cols=123  Identities=21%  Similarity=0.347  Sum_probs=94.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.++.++.+|+++|.+++.+.+||+++  ++|   +++|+++..++++++.........  . ... .    ....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~--~-~~~-~----~~~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI--K-TGN-G----LEAI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc--c-ccc-c----chhh
Confidence            5678899999999999999999999999965  226   899999999999876532111000  0 000 0    0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.++++++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            12345567778999999999999999999999999999997799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.31  E-value=1.7e-11  Score=123.93  Aligned_cols=117  Identities=14%  Similarity=0.239  Sum_probs=100.0

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHh-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  345 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~  345 (413)
                      .+++++|++++.++.+++++.++++.|.+     ++...++|+|++++++|+++.+|++...          .+.++++ 
T Consensus       131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~-  199 (449)
T TIGR00400       131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSS-  199 (449)
T ss_pred             chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHH-
Confidence            35777899999999999999999999975     4567889999899999999999986521          1235665 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                  +|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus       200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        5566788999999999999999999999999999 5899999999999998874

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.31  E-value=1.1e-11  Score=115.59  Aligned_cols=116  Identities=17%  Similarity=0.251  Sum_probs=103.2

Q ss_pred             ccccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          271 PRIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       271 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      ..+.++|.  ....++..++++.+-.++..+.+.+++||+|...+++|++|.+|+.....          +.++..    
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK----  253 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK----  253 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH----
Confidence            35667777  56788999999999999999999999999999999999999999987322          245544    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                               +|++++.++.+.+|+..+.++|.=.++.-+||+| ++.+++|+||++|+++.+
T Consensus       254 ---------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l  305 (432)
T COG4109         254 ---------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL  305 (432)
T ss_pred             ---------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence                     7888999999999999999999999999999999 699999999999999987

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.31  E-value=4.6e-11  Score=97.80  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=88.8

Q ss_pred             CceEecCCCCHHHHHHHHHhCC-CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          280 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..++............ ..+.++.+             +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~-------------~   66 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSE-------------V   66 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHH-------------h
Confidence            4567899999999999998877 889999998 999999999999875442110000 01234554             5


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVR---RLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~---~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      |..++.++.+++++.++++.|.+++.+   ..+||+ ++|+++|+||..|+++
T Consensus        67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~  118 (119)
T cd04598          67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence            666788999999999999999998864   346888 4799999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.30  E-value=2.5e-11  Score=123.71  Aligned_cols=116  Identities=22%  Similarity=0.378  Sum_probs=100.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      .+++.|.+++.++.+++++.+++++|.+++++.+||+|++++++|+++.+|+.....      .   ..++.+       
T Consensus        88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d-------  151 (486)
T PRK05567         88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE-------  151 (486)
T ss_pred             hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH-------
Confidence            345668889999999999999999999999999999999999999999999864211      0   235555       


Q ss_pred             CCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          352 ANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       352 ~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                            +|. ++++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus       152 ------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        152 ------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                  454 5788999999999999999999999999999 689999999999999875

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.30  E-value=4.2e-11  Score=96.33  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=86.4

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  356 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  356 (413)
                      ....+.+++++.++.+.|.+.+...+||+|+   +|+++|+++..|+......                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            3567899999999999999988899999997   6899999999999774431                           


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                       +|..++.++.+++++.++++.|.+++.+.+||++  +|+++|+||+.|++++
T Consensus        56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence             1223577899999999999999999999999997  5899999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.8e-11  Score=98.24  Aligned_cols=112  Identities=24%  Similarity=0.316  Sum_probs=91.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|.+++.+.+||+++   ++   +++|+++..++++.+.......     .            .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~------------~   58 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----D------------G   58 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----C------------C
Confidence            5678999999999999999989999999965   45   8999999999998664321000     0            0


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            11344557778889999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4e-11  Score=96.99  Aligned_cols=109  Identities=15%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+++++++.+|++.|.+++.+.+||+++   .|   +++|+++..+++.+.....        ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~----------   57 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK----------   57 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence            5678999999999999999999999999965   45   8999999999987532110        0011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|.+++.++.+++++.++++.|.+++...+||+++ |+++|++|..|++.
T Consensus        58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence              234457778899999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.30  E-value=2e-11  Score=118.69  Aligned_cols=117  Identities=16%  Similarity=0.166  Sum_probs=97.4

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.+  +++++.+++++.+|++.|.+++.+.+||+++   +|   +++|++|.+|+.+.+....             
T Consensus       204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------------  264 (326)
T PRK10892        204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------------  264 (326)
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC-------------
Confidence            4567876  8999999999999999999998888888864   56   8999999999987432110             


Q ss_pred             ccccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          261 VSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       261 i~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                             .| ...++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|++|++|+++.
T Consensus       265 -------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        265 -------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             -------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                   01 1245677999999999999999999999999999999997 6899999999999873

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=5.8e-11  Score=96.28  Aligned_cols=111  Identities=14%  Similarity=0.244  Sum_probs=90.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +...+.+++++.+|++.|.+.+.+.+||+++   +|   +++|+++.+++++.+....       ....           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~-----------   57 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKD-----------   57 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcC-----------
Confidence            3567899999999999999999999999975   45   7999999999987432210       0001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus        58 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          58 -AKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             -CcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence             1234457778899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.30  E-value=5.7e-11  Score=97.38  Aligned_cols=120  Identities=19%  Similarity=0.288  Sum_probs=93.5

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|.+.+...+||+++    |   +++|+++..+++++.........         ..+......
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            5678999999999999999999999999963    4   79999999999986543211100         000000001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            12355667788999999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.29  E-value=6e-11  Score=95.40  Aligned_cols=106  Identities=20%  Similarity=0.334  Sum_probs=89.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.++.++.+|+..|.+++...+||+++   +|   +++|+++..|+++....            ..          
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~----------   54 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AK----------   54 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CC----------
Confidence            5678899999999999999999999999965   45   89999999999874311            01          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|...+.++.+++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        55 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          55 --SLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             --cHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence              123346677889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.29  E-value=6.3e-11  Score=95.75  Aligned_cols=109  Identities=16%  Similarity=0.241  Sum_probs=88.7

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++.+.+||+++  ++|   +++|+++..+++++......         ..+         
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~---------   58 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLD---------   58 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCC---------
Confidence            4678999999999999999999999999965  125   89999999999986532110         011         


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         +.+++ +++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus        59 ---~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          59 ---LRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             ---HHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence               11223 35788999999999999999999999999998899999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4.8e-11  Score=99.95  Aligned_cols=125  Identities=19%  Similarity=0.362  Sum_probs=93.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC---Cccc-c-ccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPI-L-QQPVSSI  264 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~---~~~~-~-~~~i~~l  264 (413)
                      +++++.+++++.+|++.|.+++++++||+|+   +|   +++|+++..++++++.........   .... . +.....+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            5678999999999999999999999999965   45   899999999999876532111000   0000 0 0000000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                          ....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        76 ----~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 ----LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             ----cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence                011355667788899999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.29  E-value=3.2e-11  Score=101.40  Aligned_cols=130  Identities=18%  Similarity=0.316  Sum_probs=94.3

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc--cc-
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS--IQ-  265 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~--l~-  265 (413)
                      +++.++.+++++.+|++.|.+++.+++||+++   .|   +++|+++..++++++...+................  .. 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            46788999999999999999999999999965   45   89999999999875533211000000000000000  00 


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      .......+.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|+.|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            00011245566878899999999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=7e-11  Score=96.19  Aligned_cols=110  Identities=19%  Similarity=0.327  Sum_probs=86.9

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++.++.+++++.+|++.|.+++ ...++|.+    .|   +++|+++..|+++++.....       ....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~---------   58 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDL---------   58 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence            4567899999999999998888 56677764    25   79999999999985532100       0011         


Q ss_pred             ccccccccCCCCceEecCC--CCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .+.++|.+++.++.++  +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence               2344577778888887  68999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.28  E-value=9.4e-11  Score=94.56  Aligned_cols=108  Identities=22%  Similarity=0.424  Sum_probs=89.9

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++.+.+++++.+|++.|.+++++.+||+++    |   +++|+++..++++.......         .           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~-----------   54 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------L-----------   54 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------c-----------
Confidence            5778999999999999999999999999953    4   79999999999885422100         0           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        55 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 -AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             -cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence             1233446678899999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=6.2e-11  Score=99.99  Aligned_cols=129  Identities=16%  Similarity=0.222  Sum_probs=94.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccC-CCCCcccc---cccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSSLPIL---QQPVSSIQ  265 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~-~~~~~~~~---~~~i~~l~  265 (413)
                      ++.++.+++++.+|++.|.+++.+.+||+|+   +|   +++|+++..++++++...... .......+   ..+.....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            4678899999999999999999999999965   45   899999999999866421110 00000000   00000000


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      .......++++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            001122466778888899999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=1e-10  Score=93.78  Aligned_cols=104  Identities=19%  Similarity=0.366  Sum_probs=87.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN  359 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m  359 (413)
                      ++.++.++.++.++++.|.+.+.+.+||++++++++|+++..++.....          +.++.+             +|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence            3567888999999999999889999999998899999999999875211          122333             34


Q ss_pred             CCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       360 ~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      ..++.++..++++.++++.|.+++.+.+||+| + |+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence            45688899999999999999999999999999 3 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.27  E-value=8e-11  Score=95.36  Aligned_cols=111  Identities=25%  Similarity=0.381  Sum_probs=92.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+|++.|.+++++.+||+++   +|   +++|+++..++++++....        ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~--------~~~-----------   56 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPS--------LYD-----------   56 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhccc--------ccc-----------
Confidence            5678999999999999999999999999965   35   7999999999988653210        000           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ .|+++|+++..|++.
T Consensus        57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            02344557888999999999999999999999999999987 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.27  E-value=1.2e-10  Score=93.84  Aligned_cols=109  Identities=22%  Similarity=0.394  Sum_probs=90.7

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.+|++.|.+++.+.+||+++    |   +++|+++.++++++......                    +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------------------~   54 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------------------L   54 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------------------C
Confidence            4678999999999999999989999999963    4   89999999999886532110                    0


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...++++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        55 ~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          55 QTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            12244457778889999999999999999999999999998899999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.27  E-value=8.7e-11  Score=94.92  Aligned_cols=109  Identities=20%  Similarity=0.370  Sum_probs=90.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.+++++.++.+|++.|.+++.+.+||+++    +   +++|+++..++++.+....       ....           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~-------~~~~-----------   56 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG-------LDPD-----------   56 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC-------CCcc-----------
Confidence            5678999999999999999999999999963    4   8999999999987543210       0001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|++|.+|+++
T Consensus        57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          57 -TPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             -CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence             1244557778999999999999999999999999999986 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.27  E-value=1.1e-10  Score=94.12  Aligned_cols=108  Identities=19%  Similarity=0.394  Sum_probs=90.1

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++++++++.+|++.|.+++...+||+++    |   +++|+++..++++.+....         ...         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~---------   56 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHA---------   56 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccC---------
Confidence            36788999999999999999989999999963    4   7999999999987542210         111         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .+.++|.+++.++.+++++.+++++|.+++.+.+||++ +|+++|++|..|++.
T Consensus        57 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          57 ---PVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ---cHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence               23445777889999999999999999999999999998 799999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.26  E-value=1.4e-10  Score=94.40  Aligned_cols=112  Identities=26%  Similarity=0.472  Sum_probs=95.0

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      .|.+.++++.++.++.+|+..|.++++..+||++.    +   +++|++|.+|+++.+........              
T Consensus         4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~--------------   62 (117)
T COG0517           4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL--------------   62 (117)
T ss_pred             cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc--------------
Confidence            34578999999999999999999999999999964    2   69999999999997654322100              


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHh-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  324 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiit~~dl~  324 (413)
                            .+.++|.+++.++.+++++.++.+.|.+ ++++.+||+++++ +++|++|..|++
T Consensus        63 ------~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 ------PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             ------cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                  2455578789999999999999999999 7999999999886 999999999873

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.25  E-value=1.1e-10  Score=94.97  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=87.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++...+||+|+...+|   +++|+++..+++... .           ...          
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~-----------~~~----------   57 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D-----------SET----------   57 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c-----------cCC----------
Confidence            467889999999999999999999999996421135   899999999986411 0           001          


Q ss_pred             cccccccCCCCceEecC--CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .++++|.....++..  ++++.++++.|.+++...+||+|++|+++|++|.+|++.
T Consensus        58 --~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          58 --PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             --CHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence              233447666667766  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.25  E-value=8.1e-11  Score=119.62  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=96.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+++..|+++.+..+...    .+.++.+       
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~v~~-------  404 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKAN----PDDAVSK-------  404 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCC----cCCCHHH-------
Confidence            57788999999999999999999999999999999999889999999999998855422110    0235555       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                            +|..++.++++++++.++++.|.+++   .+||+ ++++++|+||++||+++|
T Consensus       405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence                  55567889999999999999998764   35555 368999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.25  E-value=1.6e-10  Score=93.60  Aligned_cols=111  Identities=14%  Similarity=0.202  Sum_probs=90.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++.+.+++++.+|++.|.+++.+.+||+++    |   +++|+++.+++++.+......      ....          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~----------   58 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD------PEST----------   58 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC------cCcC----------
Confidence            5678899999999999999999999999963    4   799999999998644321100      0001          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++..|++.
T Consensus        59 --~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          59 --LVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             --CHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence              234457778889999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.2e-10  Score=96.90  Aligned_cols=124  Identities=15%  Similarity=0.269  Sum_probs=92.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++.+.+++++.+|+++|.+.+.+.+||+++   +|   +++|++|..++.+++........     ........ -...
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence            4678899999999999999999999999975   45   89999999999876532110000     00000000 0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.++++++.+++++.++++.|.+.+...+||++  ++|+++|+||++|++.
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1235566888899999999999999999999999999984  4689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=1.7e-10  Score=93.31  Aligned_cols=110  Identities=17%  Similarity=0.364  Sum_probs=88.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      .+.++.+++++.+|++.|.+++.+.++|.+    +|   +++|+++.+++++++......      ...           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~-----------   57 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLD-----------   57 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhc-----------
Confidence            467889999999999999888887777764    35   899999999999865421000      001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        58 -~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          58 -TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence             124455777888999999999999999999999999998 599999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.25  E-value=2.8e-10  Score=114.85  Aligned_cols=165  Identities=17%  Similarity=0.230  Sum_probs=119.6

Q ss_pred             CeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeC
Q 015103          119 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG  195 (413)
Q Consensus       119 ~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~  195 (413)
                      ..+|++.+.    ..-+|..++..++......+   .+++.++-..    ..+....          ....|.++++++.
T Consensus        33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~----~V~~Vk~----------~~~~~~~~~vtl~   94 (450)
T TIGR01302        33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQAE----QVKRVKR----------AENGIISDPVTIS   94 (450)
T ss_pred             cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHHH----HHhhhcc----------ccCceecCceEeC
Confidence            457888653    23468888888877665432   2222222111    1111111          1235677899999


Q ss_pred             CCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc
Q 015103          196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE  275 (413)
Q Consensus       196 ~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~  275 (413)
                      +++++.+|+++|.+++++++||++++...+   +++|+++.+|++...            ....            .+.+
T Consensus        95 ~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~------------~V~d  147 (450)
T TIGR01302        95 PETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGK------------PVSE  147 (450)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCC------------CHHH
Confidence            999999999999999999999997521114   899999999996411            0011            2445


Q ss_pred             cCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          276 ANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       276 ~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      +|. .+++++.+++++.++++.|.+++...+||+|++|+++|++|.+|++....
T Consensus       148 vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       148 VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            577 48999999999999999999999999999999999999999999998643

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.25  E-value=6.3e-11  Score=120.37  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          275 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       275 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      ..|..+++++.+++++.+++++|.+++++.+||+|++   ++++|+++.+|+.....         .+.++.+       
T Consensus       100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d-------  163 (495)
T PTZ00314        100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE-------  163 (495)
T ss_pred             cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH-------
Confidence            3466788899999999999999999999999999863   89999999999873211         1345666       


Q ss_pred             CCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          352 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       352 ~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                            +|.+  ++.++.+++++.+++++|.+++.+.+||+| ++++++|+||++||++..
T Consensus       164 ------iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        164 ------VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence                  5554  788999999999999999999999999999 589999999999999764

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.24  E-value=1.4e-10  Score=92.64  Aligned_cols=102  Identities=19%  Similarity=0.394  Sum_probs=86.5

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.++++.|.+++.+.+||+++    +   +++|+++.+++++..             ...          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~----------   51 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNR----------   51 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccC----------
Confidence            4678899999999999999999999999953    4   799999999997611             011          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  324 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~  324 (413)
                        .+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus        52 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          52 --LVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             --CHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence              133447778899999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.24  E-value=3e-10  Score=108.17  Aligned_cols=164  Identities=15%  Similarity=0.218  Sum_probs=120.8

Q ss_pred             hhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhh
Q 015103           82 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  161 (413)
Q Consensus        82 l~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~  161 (413)
                      |..+++.|+|-.-.+++.++.+.|+.++++.+.+++.+..||++.+.++++|+++..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            35679999998767899999999999999999999999999999776789999999999865421   10010       


Q ss_pred             ccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH
Q 015103          162 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  241 (413)
Q Consensus       162 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~  241 (413)
                       .+..                   +|. +++++.+++++.++++.|.+++.+.+||+|+   .|   .++|+||.+||+.
T Consensus       134 -~l~~-------------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle  186 (292)
T PRK15094        134 -SMDK-------------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE  186 (292)
T ss_pred             -CHHH-------------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence             1111                   233 4558999999999999999999999999975   45   7999999999999


Q ss_pred             HHHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHH
Q 015103          242 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  297 (413)
Q Consensus       242 ~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  297 (413)
                      .+.........  ......+..+             ......+....++.+..+.+
T Consensus       187 ~ivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        187 LIVGEIEDEYD--EEDDIDFRQL-------------SRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             HHhCCCccccc--cccccccEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence            88754332110  0000112222             12344678888888888776

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1e-10  Score=95.99  Aligned_cols=119  Identities=19%  Similarity=0.426  Sum_probs=92.5

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++.+.+||+++    |   +++|+++..++++++........  ..........      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence            5778999999999999999999999999963    5   89999999999986643221100  0000011111      


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++..|+++
T Consensus        67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence             1344557778999999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.24  E-value=4.4e-11  Score=118.14  Aligned_cols=120  Identities=18%  Similarity=0.302  Sum_probs=104.7

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      +++.+..+.+++++..++.+|+..|.++|++.+.+++.   ++   ...||+|.+|+.+.+....+.             
T Consensus       151 v~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------------  211 (610)
T COG2905         151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------------  211 (610)
T ss_pred             HHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------------
Confidence            35578899999999999999999999999999989875   45   799999999999977653322             


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ...+|+++|+.+++++..++.+.+|+-+|.++++.++||++ +|+++|++|..||+++..
T Consensus       212 ------~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         212 ------KTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             ------cccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence                  11356777999999999999999999999999999999996 799999999999999766

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.24  E-value=9.5e-11  Score=116.43  Aligned_cols=122  Identities=17%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             cccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCC
Q 015103          177 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS  251 (413)
Q Consensus       177 ~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~  251 (413)
                      +|.++.+|+.|...++++.++.|+.+|+..+++.     .+..+.|+|.   ++   ++.|+++.++++.          
T Consensus       128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~----------  191 (451)
T COG2239         128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT----------  191 (451)
T ss_pred             CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc----------
Confidence            3899999999999999999999999999999854     4688999976   55   8999999999875          


Q ss_pred             CCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          252 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       252 ~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                         .....            .++++|.+.++++.+++..+++.+.+.+++.-++||||++++++|++|..|++..+.+
T Consensus       192 ---a~~~~------------~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         192 ---AEPDE------------LLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             ---CCcHh------------HHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence               11122            3455588889999999999999999999999999999999999999999999997653

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.24  E-value=1.2e-10  Score=118.25  Aligned_cols=111  Identities=17%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccc
Q 015103          191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  270 (413)
Q Consensus       191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~  270 (413)
                      ..++++++|+.+|+++|.+++++.+||+|+..++|   +++|++|..|+...     .      ...+            
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~------------  160 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLD------------  160 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCC------------
Confidence            36899999999999999999999999997421245   89999999998531     0      0111            


Q ss_pred             ccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          271 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       271 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      ..++++|++  +++++.+++++.+|+++|.++++..+||+|++|+++|+||++|+++..
T Consensus       161 ~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        161 TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            235556875  788999999999999999999999999999889999999999998843

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=96.01  Aligned_cols=120  Identities=22%  Similarity=0.396  Sum_probs=92.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++.+.+||+|+   .|   +++|+++..++++..........   .....       ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence            5788999999999999999999999999965   45   89999999999874211100000   00000       001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            12345667788899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2e-10  Score=92.96  Aligned_cols=111  Identities=20%  Similarity=0.340  Sum_probs=89.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|.+.|.+++.+.+||+++    |   +++|+++..+++..+..  ...    . .           .
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~--~~~----~-~-----------~   56 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVA--EGR----D-P-----------D   56 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhh--ccC----C-c-----------c
Confidence            5678999999999999999999999999963    5   89999999998732211  000    0 0           0


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus        57 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          57 TTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             cCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            01244557778889999999999999999999999999998899999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=1.8e-10  Score=94.76  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=94.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++.+.+........       ....+  ...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence            5678999999999999999999999999963    4   79999999999987654321100       00000  0111


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|..+++++.+++++.++++.|.+++...+||+|++|+++|+++..|++.
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            12355667788999999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.23  E-value=3.2e-10  Score=115.21  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      .+..+++++.+++++.+|+++|.+++++.+||++++..++   +++|++|.+|+.. .           ....       
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----------~~~~-------  158 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----------KDKS-------  158 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----------ccCC-------
Confidence            4567889999999999999999999999999997522235   8999999999863 1           0011       


Q ss_pred             cccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          266 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       266 i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                           ..+.++|++  +++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++..
T Consensus       159 -----~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        159 -----TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             -----CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                 234556876  789999999999999999999999999999999999999999999854

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2.7e-10  Score=92.15  Aligned_cols=110  Identities=21%  Similarity=0.386  Sum_probs=89.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++..+.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..++++++......      ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~-----------   57 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PRE-----------   57 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------ccc-----------
Confidence            4678899999999999999999999999964    3   799999999999865421100      001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|+++
T Consensus        58 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          58 -VPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             -CCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence             12345577788899999999999999999999999999865 9999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=8.3e-11  Score=97.70  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=86.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHh--hccCCCCCcccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG  267 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~--~~~~~~~~~~~~~~~i~~l~i~  267 (413)
                      +++++.+++++.+|++.|.+++.+.+||+++   .|   +++|+++..|+.+....  .....   .....         
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~---------   63 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSE---------   63 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchh---------
Confidence            4678999999999999999999999999975   45   89999999999862210  00000   00001         


Q ss_pred             cccccccccCCCCceEe------cCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 015103          268 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  325 (413)
Q Consensus       268 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~  325 (413)
                         ..+.++|.++...+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        64 ---~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          64 ---LTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ---eEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence               12445576554333      368899999999999999999999986 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.23  E-value=1.2e-10  Score=94.02  Aligned_cols=102  Identities=16%  Similarity=0.253  Sum_probs=84.2

Q ss_pred             eCCCCCHHHHHHHHHhCC-----ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          194 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       194 v~~~~sl~ea~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      +.+++++.++++.|.+++     +..+||+++   +|   +++|+++.+++++.            . ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~----------   52 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PD----------   52 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Cc----------
Confidence            568899999999998777     478999964   45   79999999998651            0 01          


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                        ..++++|.+++..+.+++++.++++.|.+++...+||+|++|+++|++|..|+++.
T Consensus        53 --~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          53 --TPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             --chHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence              12344577788999999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.22  E-value=2.8e-10  Score=91.71  Aligned_cols=109  Identities=23%  Similarity=0.376  Sum_probs=90.3

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++.+.+++++.+|++.|.+.+.+.+||+++    |   +++|+++..|+++.......         .    .      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~---------~----~------   55 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE---------A----T------   55 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc---------c----c------
Confidence            5788999999999999999999999999963    4   79999999999875432100         0    0      


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence             1233447778999999999999999999999999999998899999999999865

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.22  E-value=3.9e-10  Score=112.39  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=121.6

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103           83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  162 (413)
Q Consensus        83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~  162 (413)
                      ++.++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|+++..|++..+.   .  ..        .
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~--------~  255 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN--------F  255 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------C
Confidence            468899999888899999999999999999999999999999987778999999999985332   1  00        0


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103          163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  242 (413)
Q Consensus       163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~  242 (413)
                      .+..                   +| +++.++++++++.++++.|.+++.+.++|+|+   .|   ...|++|.+||+..
T Consensus       256 ~l~~-------------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDilee  309 (408)
T TIGR03520       256 DWQS-------------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIEE  309 (408)
T ss_pred             CHHH-------------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence            1111                   22 35789999999999999999999999999975   45   79999999999998


Q ss_pred             HHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHH
Q 015103          243 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV  298 (413)
Q Consensus       243 l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~  298 (413)
                      +........   ......+..+             ......+....++.++.+.|.
T Consensus       310 ivgei~de~---d~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l~  349 (408)
T TIGR03520       310 IVGDISDEF---DDEDLIYSKI-------------DDNNYVFEGKTSLKDFYKILK  349 (408)
T ss_pred             HhCCCCCcC---CcCccceEEe-------------CCCeEEEEeccCHHHHHHHhC
Confidence            864322211   0001111111             123456777889999888873

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.22  E-value=1.6e-10  Score=93.04  Aligned_cols=107  Identities=20%  Similarity=0.310  Sum_probs=86.6

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      +++..+.+++++.++++.|.+++...+||+++   .|   +++|+++.++++...            ....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~------------~~~~---------   54 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET------------DLDK---------   54 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc------------cCCC---------
Confidence            35778999999999999999999999999965   45   899999999986410            0011         


Q ss_pred             ccccccccCCCCceEecC-CCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|++.
T Consensus        55 ---~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          55 ---PVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ---CHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence               233446555566666 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.21  E-value=3e-10  Score=91.05  Aligned_cols=105  Identities=20%  Similarity=0.431  Sum_probs=88.1

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.++.++.++++.|.+++...+||+++    +   +++|+++..+++..      .       ...         
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~------~-------~~~---------   52 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK------D-------PDE---------   52 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc------C-------ccc---------
Confidence            45788999999999999998888889999953    4   89999999998751      0       011         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                         .++++|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence               234457777889999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.21  E-value=1.9e-10  Score=117.00  Aligned_cols=115  Identities=14%  Similarity=0.185  Sum_probs=96.7

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103          187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  266 (413)
Q Consensus       187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i  266 (413)
                      |.++++++.+++++.+|+++|.+++++.+||+|++...|   +++|++|.+|+...            ....        
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v------------~~~~--------  162 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV------------NDRE--------  162 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc------------cccC--------
Confidence            678899999999999999999999999999996411135   89999999998641            0011        


Q ss_pred             ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          267 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       267 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                          ..+.++|+++  ++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++...
T Consensus       163 ----~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~  222 (505)
T PLN02274        163 ----TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG  222 (505)
T ss_pred             ----CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                2345568766  789999999999999999999999999998999999999999998665

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=4.8e-10  Score=89.80  Aligned_cols=111  Identities=23%  Similarity=0.456  Sum_probs=91.4

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.++++.|.+++.+.+||+++   ++   +++|+++.+++++++........                  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~------------------   57 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL------------------   57 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc------------------
Confidence            4678899999999999999999999999965   35   89999999999987654221100                  


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|++.
T Consensus        58 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          58 -VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             -ccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence             0023346677888999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.19  E-value=4.1e-10  Score=91.01  Aligned_cols=109  Identities=14%  Similarity=0.234  Sum_probs=88.7

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++...++|+++    |   +++|+++..++++.+....       ....           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~-------~~~~-----------   56 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDG-------LPSS-----------   56 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCC-------CCCC-----------
Confidence            4678899999999999999999999999953    4   7999999999987543210       0001           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus        57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence             1234457778889999999999999999999999999984 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.17  E-value=4.4e-10  Score=90.34  Aligned_cols=108  Identities=19%  Similarity=0.381  Sum_probs=86.5

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++.+++......       ..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~-----------   56 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FS-----------   56 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cC-----------
Confidence            5678999999999999999999999999963    4   799999999999865432110       01           


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..+.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus        57 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          57 -LPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             -cCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence             12334477778899999999999999987 3 34788988899999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.16  E-value=2.1e-10  Score=119.72  Aligned_cols=120  Identities=16%  Similarity=0.254  Sum_probs=99.1

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.++..++++++++.++++.|.+++.+.+||+|+   ++   +++|+++.+|+.+.+......       ..     
T Consensus       450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~-----  511 (574)
T PRK01862        450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD-----  511 (574)
T ss_pred             HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc-----
Confidence            4578888999999999999999999999999999975   45   899999999998744221000       00     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~~~~  328 (413)
                             ..+.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|++|++|+++.+.
T Consensus       512 -------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 -------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             -------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                   13455688888999999999999999999999999999876  58999999999998654

>PRK11573 hypothetical protein; Provisional

Probab=99.16  E-value=4.3e-10  Score=112.14  Aligned_cols=122  Identities=12%  Similarity=0.207  Sum_probs=99.5

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  .+.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+..       .......+ 
T Consensus       188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-------~~~~~l~~-  259 (413)
T PRK11573        188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-------FTKENMLR-  259 (413)
T ss_pred             ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc-------CCHHHHHh-
Confidence            56777854  6899999999999999999999999999975 3789999999999875432110       11121111 


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               ++ +++..++++.++.++++.|.+++.|-..|+| |.|...|+||..||++.++|
T Consensus       260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG  312 (413)
T PRK11573        260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence                     11 3678999999999999999999999999999 69999999999999999987

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.16  E-value=5.5e-10  Score=91.56  Aligned_cols=119  Identities=16%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++++++++.+|++.|.+.+.+.+||+|+   +|   +++|+++..++++.....+....         ...+ ...+
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence            5678899999999999999999999999975   45   89999999999875432211100         0000 0001


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ...+.++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            12344557778899999999999999999999999999986 99999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.15  E-value=4.4e-10  Score=94.57  Aligned_cols=109  Identities=21%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccC-------cccHHHHHhcCCCC
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD-------EMNIHQALQLGQDA  352 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~-------~~~v~~~l~~~~~~  352 (413)
                      .+.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.............       ...+.++.....  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI--   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence            46789999999999999999999999999989999999999999986543221110000       001122111000  


Q ss_pred             CCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC
Q 015103          353 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  392 (413)
Q Consensus       353 ~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~  392 (413)
                        -++.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus        80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence              00123567889999999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.15  E-value=6.8e-10  Score=88.84  Aligned_cols=100  Identities=18%  Similarity=0.291  Sum_probs=84.5

Q ss_pred             EEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccc
Q 015103          192 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  271 (413)
Q Consensus       192 v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~  271 (413)
                      +++.+++++.+|++.|.+.+.+.+||+++    |   +++|+++..++++..              ..            
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~--------------~~------------   50 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENAT--------------YG------------   50 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhc--------------cc------------
Confidence            56889999999999999999999999963    4   899999999987621              01            


Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      .+.++|.....++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus        51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            12233666788999999999999999999999999998 699999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.13  E-value=3.7e-10  Score=106.62  Aligned_cols=110  Identities=15%  Similarity=0.232  Sum_probs=92.1

Q ss_pred             CCCCCCC-cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          184 GRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       184 ~~~~~~~-~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      +++|.++ +..+.+++++.+|++.|.+.+++.+||+|+   +|   +++|+++..|+++.+...        ....    
T Consensus       158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~--------~~~~----  219 (268)
T TIGR00393       158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGG--------GSLK----  219 (268)
T ss_pred             HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcC--------Cccc----
Confidence            4577777 999999999999999999999999999975   45   899999999998854210        0011    


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEe
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  319 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit  319 (413)
                              ..++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       220 --------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       220 --------SEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             --------CcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                    2345568888999999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.12  E-value=3.7e-10  Score=105.44  Aligned_cols=115  Identities=14%  Similarity=0.246  Sum_probs=98.6

Q ss_pred             CCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.  .....+.+++++.+-.++-.+.+.+++||+|.   ..   +++|++|.+|++.             ...+.+
T Consensus       190 Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~-------------~~~~t~  250 (432)
T COG4109         190 VEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLD-------------KKPSTT  250 (432)
T ss_pred             HHHhccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhc-------------CCCCcc
Confidence            344565  67788999999999999999999999999976   44   8999999999976             122333


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      +            ..+|++++.++.+.+++..+.++|.=.++.-+||+|++.+++|++|++|++..+.
T Consensus       251 i------------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         251 I------------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             H------------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence            3            3349999999999999999999999999999999999999999999999998654

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.1e-09  Score=93.29  Aligned_cols=126  Identities=25%  Similarity=0.466  Sum_probs=95.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhcc-C---CCCCcccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ  265 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~-~---~~~~~~~~~~~i~~l~  265 (413)
                      +++++.+++++.+|++.|.+++++.+||+++    |   +++|+++..++++++..... .   .++.......++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            5778999999999999999999999999963    4   79999999999987753321 0   000011111222111 


Q ss_pred             cccc-----------cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          266 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       266 i~~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                       ..|           ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           12355678888999999999999999999999999999986 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.11  E-value=1.2e-09  Score=87.71  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ....+.+++++.++.+.|.+.+...+||+++...+|   +++|+++.+++.+....                        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence            456789999999999999999889999996311035   89999999999874421                        


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                            +|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|++|++.
T Consensus        56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                  2556788999999999999999999999999995 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=3.2e-09  Score=85.01  Aligned_cols=104  Identities=21%  Similarity=0.370  Sum_probs=85.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      ++.++.+++++.+++..|.+.+.+.+||+++   .+   +++|+++.+++++.    ..         ..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~----~~---------~~----------   52 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRN----PE---------EE----------   52 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhc----cc---------cc----------
Confidence            4678899999999999999989999999964   35   89999999998751    00         01          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                        .+.++|..++.++..++++.++++.|.+++...+||+| +|+++|+++..|++.
T Consensus        53 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          53 --QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             --hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence              12233666788899999999999999999999999998 479999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.06  E-value=1.7e-09  Score=108.67  Aligned_cols=120  Identities=18%  Similarity=0.326  Sum_probs=99.6

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      .++++|.  .++.++..+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. ..     ....    
T Consensus       207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~-----~~~~----  276 (429)
T COG1253         207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL-----DLRV----  276 (429)
T ss_pred             EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc-----chhh----
Confidence            4555675  4688899999999999999999999999998 56799999999999996654321 11     1111    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               .. .+++.++++.++.+++++|.+.+.|-..|+| |.|.+.|+||..||++.++|
T Consensus       277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence                     11 2688999999999999999999999999999 69999999999999999987

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.03  E-value=2.6e-09  Score=87.32  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCC-ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~-v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++.++.+++++.+|++.|...+ .+.+||+++    |   +++|+++..++++++...+..     ...           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~-----------   58 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY-----------   58 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence            4567889999999999998877 899999963    4   799999999998755321100     000           


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ....++++|..++.++.+++++.++++.|.+++..   ..+|++++|+++|++|..|+++
T Consensus        59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            01135566888899999999999999999988753   4568888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.00  E-value=4.3e-09  Score=88.50  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC-ccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQQPVSSIQLGT  268 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~-~~~~~~~i~~l~i~~  268 (413)
                      .++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|..|+++++.......... ...+......+  ..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v--~~   73 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLV--SS   73 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccH--HH
Confidence            4788999999999999999999999999975   45   8999999999999775421110000 00000000000  00


Q ss_pred             cc--ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103          269 WV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  311 (413)
Q Consensus       269 ~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  311 (413)
                      ..  ..+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus        74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            00  01122345678899999999999999999999999999853

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK11573 hypothetical protein; Provisional

Probab=98.97  E-value=2.7e-08  Score=99.37  Aligned_cols=165  Identities=18%  Similarity=0.204  Sum_probs=122.4

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103           83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  162 (413)
Q Consensus        83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~  162 (413)
                      ++.++.|+|-.-.+++.++.+.++.++++.+.+.+.+..||++.+..+++|++...|++..+..   . ...        
T Consensus       185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~--------  252 (413)
T PRK11573        185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF--------  252 (413)
T ss_pred             CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC--------
Confidence            5688999999999999999999999999999999999999999887889999999999864321   0 111        


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103          163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  242 (413)
Q Consensus       163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~  242 (413)
                      ....+.+                 ..+++..+++++++.++++.|.+++.+-+.|+|+   -|   ...|+||..||+..
T Consensus       253 ~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilEe  309 (413)
T PRK11573        253 TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEE  309 (413)
T ss_pred             CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHHH
Confidence            1111111                 1357889999999999999999999999999976   55   79999999999998


Q ss_pred             HHhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHH
Q 015103          243 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  297 (413)
Q Consensus       243 l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  297 (413)
                      +.........  ......+...             ......+....++.++-+.+
T Consensus       310 ivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~d~~~~l  349 (413)
T PRK11573        310 IVGDFTTSMS--PTLAEEVTPQ-------------NDGSVIIDGTANVREINKAF  349 (413)
T ss_pred             HhCCCCcccC--cccccceEEe-------------cCCEEEEEeeeEHHHHHHHh
Confidence            8754332110  0000111111             12234577778888877776

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.97  E-value=4.8e-09  Score=106.71  Aligned_cols=116  Identities=12%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.+++.++.+++++.+|++.|.+++++.+||+|+   ++   +++|++|.+|+++.+.....       ...     
T Consensus       338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~-----  399 (454)
T TIGR01137       338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPD-----  399 (454)
T ss_pred             HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcC-----
Confidence            4578899999999999999999999999999999975   45   89999999999985532100       001     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                             ..+.++|.+++.++.+++++.+++++|.+++   .|+|+++|+++|+||++|++..+
T Consensus       400 -------~~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       400 -------DAVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -------CCHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                   1244558888889999999999999998754   35555579999999999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.95  E-value=3.8e-09  Score=105.06  Aligned_cols=116  Identities=17%  Similarity=0.285  Sum_probs=100.5

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  345 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~  345 (413)
                      .+++.+|+..++++.++.|+.+++..+++.     ....+.|+|++++++|+++.++++..-.          +..+.+ 
T Consensus       132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~-  200 (451)
T COG2239         132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD-  200 (451)
T ss_pred             hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH-
Confidence            467778999999999999999999999843     4678999999999999999999876321          234555 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                                  +|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus       201 ------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         201 ------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             ------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                        6777799999999999999999999999999999 699999999999998765

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.94  E-value=2.5e-09  Score=75.74  Aligned_cols=54  Identities=28%  Similarity=0.409  Sum_probs=50.7

Q ss_pred             cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       358 ~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      +|.++++++++++++.++++.|.+++.+++||+| ++|+++|+||.+||+++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence            6777899999999999999999999999999999 58999999999999999863

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=98.91  E-value=7.1e-10  Score=84.19  Aligned_cols=31  Identities=48%  Similarity=0.809  Sum_probs=29.5

Q ss_pred             CceEEEcCeeeeCCCCCcccCCCCCcceEEE
Q 015103            1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYI   31 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~   31 (413)
                      .|||+|||+|++||++|++.|++|+.||+|+
T Consensus        49 ~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~   79 (79)
T cd02859          49 QYKFIVDGEWRHSPDLPTETDDEGNVNNVID   79 (79)
T ss_pred             EEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence            3999999999999999999999999999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.90  E-value=4.7e-09  Score=74.29  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=51.3

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            5678889999999999999999999999999999999999999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.79  E-value=3.2e-08  Score=93.61  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=101.7

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHh
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ  347 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~  347 (413)
                      +|.|+|.  ..+..+..+++..++.+.+....+.++|+..+ -+.++|++..+|+++++.++. +..     ..+..++ 
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a-  274 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA-  274 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence            6777785  46888999999999999999999999999853 457999999999999876543 322     2233322 


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                   ..+++++.++++.+-+..|.+++-|.-.||| |.|.+.|+||+.||++.++|
T Consensus       275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                         2578999999999999999999999999999 79999999999999999987

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.72  E-value=3.5e-08  Score=87.56  Aligned_cols=120  Identities=13%  Similarity=0.341  Sum_probs=100.4

Q ss_pred             ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          273 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       273 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      ++++|.  ...+++..+.++.+++..+.+...+++||+.+ .+.+.|++-..||+.++.....      ...+.+.|   
T Consensus        69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL---  139 (293)
T COG4535          69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL---  139 (293)
T ss_pred             HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc---
Confidence            445564  35788999999999999999999999999964 5689999999999997653321      13455544   


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV  413 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~~  413 (413)
                                 +|...++++-.+...++.|...+.|...||| +-|-+-|.||..||+..++|.
T Consensus       140 -----------RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVGd  191 (293)
T COG4535         140 -----------RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVGD  191 (293)
T ss_pred             -----------ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhcc
Confidence                       3678899999999999999999999999999 699999999999999999873

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.67  E-value=3.8e-07  Score=89.50  Aligned_cols=110  Identities=16%  Similarity=0.239  Sum_probs=90.5

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      .......++.+..++++.|...+...+.|+|+++++.|.++..++.......         .++.+             .
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~  307 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V  307 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence            3344566777899999999999999999999999999999999987755421         12333             2


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      +.....++.++++|.+++..|.+++.. +||+| ++|+++|+||+.+++++|.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            223567899999999999999999998 99999 58999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.66  E-value=9.1e-07  Score=89.11  Aligned_cols=129  Identities=19%  Similarity=0.320  Sum_probs=107.2

Q ss_pred             hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhc
Q 015103           83 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  162 (413)
Q Consensus        83 ~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~  162 (413)
                      .++++-++|-....++.++.+.++.++.+.+.+.+.+..||++....+++|++...|++..+.....   ..        
T Consensus       204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~--------  272 (429)
T COG1253         204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL--------  272 (429)
T ss_pred             CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc--------
Confidence            5788999999999999999999999999999999999999999777889999999999965542210   00        


Q ss_pred             cHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHH
Q 015103          163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  242 (413)
Q Consensus       163 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~  242 (413)
                      ...                    ..-++++.+++.+++.++++.|++.+.|-..|+|+   -|   ...|++|..||+..
T Consensus       273 ~~~--------------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiEe  326 (429)
T COG1253         273 DLR--------------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIEE  326 (429)
T ss_pred             chh--------------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHHH
Confidence            000                    01237899999999999999999999999999986   45   79999999999998


Q ss_pred             HHhhcc
Q 015103          243 ICRHFK  248 (413)
Q Consensus       243 l~~~~~  248 (413)
                      +.....
T Consensus       327 IvGei~  332 (429)
T COG1253         327 IVGEIP  332 (429)
T ss_pred             HhCCCc
Confidence            876443

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.61  E-value=8.8e-07  Score=84.65  Aligned_cols=169  Identities=17%  Similarity=0.196  Sum_probs=120.7

Q ss_pred             HHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCC---CCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCC
Q 015103          113 LYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR  189 (413)
Q Consensus       113 l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  189 (413)
                      |..+.....|++.+    ...-+|..+..-.+..+.-.+   .+.+.++- ...+..|+..+..             ...
T Consensus        55 ltr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~Q-A~~v~~vK~~~~g-------------~~~  116 (503)
T KOG2550|consen   55 LTRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPEDQ-ADMVRRVKNYENG-------------FIN  116 (503)
T ss_pred             hhhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHHH-HHHHHHHHHhhcc-------------ccc
Confidence            33444556688765    345577778877766554221   23343332 2234556554432             234


Q ss_pred             CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccc
Q 015103          190 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  269 (413)
Q Consensus       190 ~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~  269 (413)
                      +++.+.|+.++.++++.-..++...+||.... ..|  .+++|++|-+||-. +.++           ..          
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g-~~~--~KLvG~vtsrdi~f-~~~~-----------~~----------  171 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG-KRG--SKLVGIITSRDIQF-LEDN-----------SL----------  171 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCC-ccc--ceeEEEEehhhhhh-hhcc-----------cc----------
Confidence            67789999999999999999999999999642 223  38999999999843 3110           11          


Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                        -+.++|.+..++.....++.++-+++.+++...+||||++|+++.++++.||.+.
T Consensus       172 --~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  172 --LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             --hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence              2345587777889999999999999999999999999999999999999999873

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=7.2e-07  Score=88.57  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             ecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcc
Q 015103          284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC  363 (413)
Q Consensus       284 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~  363 (413)
                      ..++.+..++++.|...+.+.+.|+|++++++|+++..++......+         .++.+++             ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence            34667889999999999999999999999999999999997754321         1233322             2356


Q ss_pred             eEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          364 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       364 ~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .++.++++|.+++..|..+... +|||| ++|+++|+||..++++.|.+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            7899999999999999998776 99999 58999999999999999854

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.53  E-value=2.3e-07  Score=92.85  Aligned_cols=148  Identities=20%  Similarity=0.362  Sum_probs=112.1

Q ss_pred             ccccccccccc-------cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-----CCcEEEEEeHHHHHHHHh
Q 015103          261 VSSIQLGTWVP-------RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-----NDSLLDIYSRSDITALAK  328 (413)
Q Consensus       261 i~~l~i~~~~~-------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~lvGiit~~dl~~~~~  328 (413)
                      ++.+++-.|.+       +++++|+.++++++.-+.+..+.+.+....+..+||||+     .+++.|+|-++.++.+++
T Consensus       565 LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~  644 (762)
T KOG0474|consen  565 LKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLK  644 (762)
T ss_pred             ccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHH
Confidence            44555545542       568999999999999999999999999999999999985     258999999999999887


Q ss_pred             hhhhhhc--c---c---CcccHHHHHhcCCC------------CCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEE
Q 015103          329 DKAYAQI--H---L---DEMNIHQALQLGQD------------ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRL  387 (413)
Q Consensus       329 ~~~~~~~--~---l---~~~~v~~~l~~~~~------------~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l  387 (413)
                      ++.+...  .   +   ...+.+++......            ...... +|.+.++++.+++++..++..|.+-+.|++
T Consensus       645 ~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhL  724 (762)
T KOG0474|consen  645 KRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHL  724 (762)
T ss_pred             hhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeE
Confidence            6554311  0   0   11223333321110            000112 688899999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEehHHHHHH
Q 015103          388 VIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       388 ~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      .||. ..++++|++|++|+.++
T Consensus       725 lVv~-~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  725 LVVP-KTNRVVGILTRKDLARY  745 (762)
T ss_pred             EEec-CCCceeEEEehhhhhhH
Confidence            9999 57888999999999854

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.50  E-value=2.1e-06  Score=81.47  Aligned_cols=149  Identities=21%  Similarity=0.275  Sum_probs=118.0

Q ss_pred             ccchHHHHHHHHHHHHHhh----------------hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCC
Q 015103           65 QYSEADLQLSRDRISSFLS----------------THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK  128 (413)
Q Consensus        65 ~~~~~~~~~~~~~~~~fl~----------------~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~  128 (413)
                      ++|.+|+...-+..+.+-.                .-|+.|+|-..+.+..+|.+++.++..+.+...-...+|||..+.
T Consensus       164 ~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~  243 (423)
T COG4536         164 LSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL  243 (423)
T ss_pred             ccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh
Confidence            4667777554444444433                357899999899999999999999999999999999999999888


Q ss_pred             CeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHH
Q 015103          129 GRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  208 (413)
Q Consensus       129 ~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~  208 (413)
                      .+++||+-..|+++.+.+..    +++.+++.           +.              ..++.+++..+++.+-+..|.
T Consensus       244 DnIiGvlh~r~llr~l~e~~----~~~k~d~~-----------~~--------------a~epyFVPe~Tpl~~QL~~F~  294 (423)
T COG4536         244 DNIIGVLHVRDLLRLLNEKN----EFTKEDIL-----------RA--------------ADEPYFVPEGTPLSDQLVAFQ  294 (423)
T ss_pred             hHhhhhhhHHHHHHHhhccC----cccHhHHH-----------HH--------------hcCCeecCCCCcHHHHHHHHH
Confidence            88999999999998776431    13223221           11              246889999999999999999


Q ss_pred             hCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhcc
Q 015103          209 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK  248 (413)
Q Consensus       209 ~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~  248 (413)
                      +++-|-..|+|+   -|   .+.|++|.+||+.-+...+.
T Consensus       295 ~~k~hialVVDE---YG---~i~GLVTLEDIlEEIVGdft  328 (423)
T COG4536         295 RNKKHIALVVDE---YG---DIQGLVTLEDILEEIVGDFT  328 (423)
T ss_pred             HhcceEEEEEec---cC---cEEeeeeHHHHHHHHhcccc
Confidence            999999999976   55   89999999999997765443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.45  E-value=3.5e-06  Score=82.70  Aligned_cols=110  Identities=11%  Similarity=0.210  Sum_probs=88.9

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      .......++.+..+++..|...+...+.|++.   ++   ++.|.++.+++..++...            .         
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~---------  302 (363)
T TIGR01186       250 TGPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------Q---------  302 (363)
T ss_pred             ccceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------C---------
Confidence            33445677889999999999999999999975   44   799999999988754321            0         


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                         .+.+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+..
T Consensus       303 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       303 ---GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ---chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence               11222445677899999999999999999998 9999999999999999999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.45  E-value=4.3e-07  Score=86.71  Aligned_cols=107  Identities=19%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             CceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCc
Q 015103          280 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL  356 (413)
Q Consensus       280 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~  356 (413)
                      +++.+.|+.++.++++....+++..+||+.+   .++++|+||.+|+-.+ ++.        ...+.+            
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------  175 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------  175 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence            5678899999999999999999999999964   4699999999998776 211        123344            


Q ss_pred             ccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       357 ~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                       +|+.+.++...+.+|.++-+.+.+++-..||||| ++|.++.+|+++||.+.
T Consensus       176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             -hcccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence             6766778889999999999999999999999999 69999999999999875

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=1.4e-05  Score=79.46  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=84.3

Q ss_pred             eCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccc
Q 015103          194 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  273 (413)
Q Consensus       194 v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v  273 (413)
                      ..++.+..+|+..|...+.+.+.|+|+   ++   ++.|+++..++.+.....            ..            +
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~------------~  339 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QG------------L  339 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cc------------h
Confidence            446778999999999999999999976   55   899999999997643210            11            1


Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .+.+.....++.+++++.+++..+.+.... +||+|++|+++|+|++.+++..+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        340 DAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             hhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence            122444677899999999999999987766 999999999999999999999665

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=98.24  E-value=5.6e-07  Score=85.10  Aligned_cols=34  Identities=44%  Similarity=0.891  Sum_probs=32.4

Q ss_pred             ceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCC
Q 015103            2 YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQP   36 (413)
Q Consensus         2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~   36 (413)
                      |||+|||+|+||+++|++.|..|+.||++.| ...
T Consensus       131 ~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v-~~~  164 (289)
T KOG1616|consen  131 YKFIVDGEWRHDPDLPTAEDSLGNLNNILEV-QDP  164 (289)
T ss_pred             EEEecCCceecCCCCcccccccCCcccceEe-cCc
Confidence            9999999999999999999999999999999 644

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.13  E-value=2.5e-05  Score=69.77  Aligned_cols=126  Identities=18%  Similarity=0.288  Sum_probs=104.4

Q ss_pred             hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhcc
Q 015103           84 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  163 (413)
Q Consensus        84 ~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~  163 (413)
                      ...+.|+|-..+++++++.+.++.+.+..+.+...+.-||...++..+.|+|-+.|++.+++   ++...+.        
T Consensus        66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F~--------  134 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPFD--------  134 (293)
T ss_pred             HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCccccc--------
Confidence            45677777777899999999999999999999999999999998888999999999997654   2211121        


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103          164 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  243 (413)
Q Consensus       164 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l  243 (413)
                      ++.                    +-+|.+.+++.-.+...++-++.++.|...|+|+   =|   .+-|++|..||+.-+
T Consensus       135 i~~--------------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE---fG---gVsGLVTIEDiLEqI  188 (293)
T COG4535         135 IKE--------------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---FG---GVSGLVTIEDILEQI  188 (293)
T ss_pred             HHH--------------------hcccceecccchhHHHHHHHHHhhcCceEEEEec---cC---CeeeeEEHHHHHHHH
Confidence            111                    2468899999999999999999999999999976   44   699999999999988


Q ss_pred             Hhh
Q 015103          244 CRH  246 (413)
Q Consensus       244 ~~~  246 (413)
                      ..-
T Consensus       189 VGd  191 (293)
T COG4535         189 VGD  191 (293)
T ss_pred             hcc
Confidence            653

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.09  E-value=9.2e-06  Score=81.69  Aligned_cols=143  Identities=15%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhh-cc-CCCCC--ccc--
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH-FK-HSSSS--LPI--  256 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~-~~-~~~~~--~~~--  256 (413)
                      ++++|.++++++..-+.+....+.+.....+.+||+|+.+.+. ...+.|++-++.++..+.+. +. +.++.  .+.  
T Consensus       584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~  662 (762)
T KOG0474|consen  584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR  662 (762)
T ss_pred             HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence            4678999999999999999999999999999999998633211 23799999999998877542 22 11000  000  


Q ss_pred             ---------cccccccccccccc----ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 015103          257 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  323 (413)
Q Consensus       257 ---------~~~~i~~l~i~~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl  323 (413)
                               ...+++++.+....    .....+|++.+.++.+++++..++.++++-+.+.+.||++.++++|++|++|+
T Consensus       663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~  742 (762)
T KOG0474|consen  663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL  742 (762)
T ss_pred             cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence                     11122232221111    12345678889999999999999999999999999999998899999999999


Q ss_pred             HHH
Q 015103          324 TAL  326 (413)
Q Consensus       324 ~~~  326 (413)
                      ...
T Consensus       743 ~~~  745 (762)
T KOG0474|consen  743 ARY  745 (762)
T ss_pred             hhH
Confidence            863

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.99  E-value=1.5e-05  Score=64.82  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=49.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      +++++|.+++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+..
T Consensus        59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            466778888999999999999999999999999999998899999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.89  E-value=3.7e-05  Score=51.02  Aligned_cols=47  Identities=28%  Similarity=0.483  Sum_probs=42.7

Q ss_pred             ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          363 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       363 ~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      +.++.+++++.++++.|...+.+.+||++ ++++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD-EEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC-CCCeEEEEEEHHHHHHhh
Confidence            46789999999999999999999999999 468999999999998865

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.82  E-value=4.6e-05  Score=61.90  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=45.7

Q ss_pred             cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 015103          358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR  408 (413)
Q Consensus       358 ~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~  408 (413)
                      +|.+++.++.+++++.++++.|...+.+.+||+| ++|+++|+||..||.+
T Consensus        63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~  112 (113)
T cd04597          63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE  112 (113)
T ss_pred             hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence            6666788999999999999999999999999999 5799999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=97.82  E-value=1.4e-05  Score=61.12  Aligned_cols=30  Identities=47%  Similarity=0.829  Sum_probs=27.3

Q ss_pred             CceEEEcCeee-eCCCCCc-ccCCCCCcceEE
Q 015103            1 MYKFYVDGEWR-HDENQPH-VSGNYGVVNCVY   30 (413)
Q Consensus         1 ~ykf~vdg~w~-~~~~~~~-~~~~~g~~~~~~   30 (413)
                      .|||+|||+|. +||..|. ..|.+|+.||+|
T Consensus        50 ~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v~   81 (82)
T cd02861          50 EYKFVVDGEWVIVDPNAAAYVDDGFGGKNAVF   81 (82)
T ss_pred             EEEEEECCEEeeCCCCCCceecCCCCccceEc
Confidence            39999999999 9999985 899999999987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.70  E-value=0.00014  Score=48.21  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.1

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45788999999999999999999999999889999999999987643

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.0007  Score=68.64  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=88.0

Q ss_pred             ceEecCC-CCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC----CCC
Q 015103          281 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ----DAN  353 (413)
Q Consensus       281 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~----~~~  353 (413)
                      ..++..+ .++.+...+|.+...+.+||+-  +..+++|.+.++++...+.............+. ...+...    ...
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~  636 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP  636 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence            5555555 8999999999999999999883  356899999999987744311100000000011 0000000    001


Q ss_pred             CCcc---cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          354 PSLG---FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       354 ~~~~---~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      .+.+   +|...+.++...++...+++++.+-+.+.+.|..  +|++.|+||..|++++.
T Consensus       637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            1222   6778899999999999999999999999887765  79999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0024  Score=60.28  Aligned_cols=164  Identities=19%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-----HHHhhccCCCCCcccccccc
Q 015103          187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-----CICRHFKHSSSSLPILQQPV  261 (413)
Q Consensus       187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-----~l~~~~~~~~~~~~~~~~~i  261 (413)
                      +.+.+++++-|  |.||+++     -+++.++.    +|   +++-+=|..+|+.     |+..+.+.           +
T Consensus       214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~-----------v  268 (386)
T COG4175         214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPANDYVRDFVRN-----------V  268 (386)
T ss_pred             hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHHHHHHHHhc-----------C
Confidence            35667777766  8888875     26677874    46   8999999999985     22221111           1


Q ss_pred             cccccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCc
Q 015103          262 SSIQLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  339 (413)
Q Consensus       262 ~~l~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~  339 (413)
                      ...    ..-++.++|.+  ....-.+...-..+++.+.....+.+.+++..++.+|+++..++.....           
T Consensus       269 ~~~----~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~-----------  333 (386)
T COG4175         269 DRS----RVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAAL-----------  333 (386)
T ss_pred             Chh----heeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccc-----------
Confidence            000    01234556663  2222222333456788888888777778887788999999888766300           


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       340 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                          ..++.++..++++.+.+....+.... ++||| ++++++|+|++..++.+|.+
T Consensus       334 --------------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         334 --------------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             --------------------cccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence                                12466788999999999998888774 78999 69999999999999999875

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.0077  Score=61.32  Aligned_cols=133  Identities=12%  Similarity=0.100  Sum_probs=93.4

Q ss_pred             CcEEeCCC-CCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccC-CCC--Ccccccccccccc
Q 015103          190 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSS--SLPILQQPVSSIQ  265 (413)
Q Consensus       190 ~~v~v~~~-~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~-~~~--~~~~~~~~i~~l~  265 (413)
                      ++..+..+ +++.|...+|.+...+.+||+-+. ++.   .++|++..+++...+...... ...  .......+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~-~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE-DSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEcc-ccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666665 899999999999999999998542 233   899999999998777532111 000  0001122222111


Q ss_pred             c-ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          266 L-GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       266 i-~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      - .......+++|.-.+.++...++...+++++.+-+.+.+.|. ++|++.|+||.+|+++..
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            1 111124456777888999999999999999999999998876 589999999999998854

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.75  E-value=0.0058  Score=60.53  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++.+|.+.......+.+  .+++.   ++.+.+.|+|+     |+++..+...+.+...       +.++.+ +     
T Consensus       275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-----  331 (382)
T TIGR03415       275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-----  331 (382)
T ss_pred             eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence            445667433322233222  34433   78899999985     7888777655433101       112222 1     


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                              .....++++++++.+++..+.+++.. ++|+| + |+++|+|++.+++.+|.+
T Consensus       332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence                    12467889999999999999988865 88888 4 999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.42  E-value=0.022  Score=59.30  Aligned_cols=60  Identities=10%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF  247 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~  247 (413)
                      .++|.+++..+..++|..|.-+.+....++.+|++++ .++.   .++|.+.++.+...+.++.
T Consensus       591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence            3589999999999999999998887777999999975 3333   7999999999999887643

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.17  E-value=0.44  Score=44.09  Aligned_cols=117  Identities=18%  Similarity=0.200  Sum_probs=69.1

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC-CCCccccccccccccc
Q 015103          188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPILQQPVSSIQL  266 (413)
Q Consensus       188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~-~~~~~~~~~~i~~l~i  266 (413)
                      .+.++.|+-|  +.||+++     ..++.|+++    |   +++-+-+..+|++.-...|-.. .+........+...  
T Consensus       186 ~kTivfVTHD--idEA~kL-----adri~vm~~----G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~--  249 (309)
T COG1125         186 GKTIVFVTHD--IDEALKL-----ADRIAVMDA----G---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLV--  249 (309)
T ss_pred             CCEEEEEecC--HHHHHhh-----hceEEEecC----C---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchh--
Confidence            3456677666  7788876     366888853    6   8999999998886322211110 00000000111111  


Q ss_pred             ccccccccccCCCCc----eEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          267 GTWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       267 ~~~~~~v~~~m~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                           .+.+.+.+..    -.+.......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus       250 -----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         250 -----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             -----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence                 1112121111    11233344566888888899999999999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.09  E-value=0.53  Score=43.57  Aligned_cols=113  Identities=15%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh--------h-cccCcccHHHHHhcC
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q-IHLDEMNIHQALQLG  349 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~--------~-~~l~~~~v~~~l~~~  349 (413)
                      +.++.++.+  +.||+++-     +.+.|.+ +|+++-+-+..+++..-++..-.        . ..+...++.++...+
T Consensus       187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            346666665  68888875     4688887 79999999988887633211100        0 011122233322211


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                      ..    .     .--.........+++..+...+...++||| ++|+++|.||+.+++..
T Consensus       259 ~~----~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP----A-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cc----c-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            10    0     000122234445577888888999999999 69999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.03  E-value=0.097  Score=49.70  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             CHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC
Q 015103          199 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG  278 (413)
Q Consensus       199 sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~  278 (413)
                      .-..++..+.+...+.+.+++.   .+   +.+|+++..+...+                                 .+.
T Consensus       294 ~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~~  334 (386)
T COG4175         294 GPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------ALI  334 (386)
T ss_pred             ccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------ccc
Confidence            3345667777766666666642   33   68888888776552                                 133


Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .++.++..++++.+.+..+.+.. ..+||+|++++++|++++..++.++.
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence            45678889999999998887665 46899999999999999999998664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=90.77  E-value=0.55  Score=46.61  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      ....++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       333 AAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             ccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            356788999999999999888765 4888885 99999999999988653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=87.41  E-value=0.8  Score=48.16  Aligned_cols=62  Identities=16%  Similarity=0.187  Sum_probs=53.6

Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhh
Q 015103          268 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       268 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~  329 (413)
                      .+...+.++|.+++.++..+.+..|..+.+....++.+|+||+  +--++|.+.++.+..++..
T Consensus       585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            3445789999999999999999999999988777999999985  4579999999999887653

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=85.20  E-value=0.46  Score=35.36  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=22.4

Q ss_pred             CceEEEcCeeeeCCCCCcccCCCCCcce
Q 015103            1 MYKFYVDGEWRHDENQPHVSGNYGVVNC   28 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~   28 (413)
                      .|||.|||+|.+++..|...+.....++
T Consensus        54 ~Y~~~v~~~~~~~~~~~~~~~~~~~~~~   81 (83)
T cd02688          54 QYKYVLDGGKGPDEGEPKADEGGSGDSV   81 (83)
T ss_pred             EEEEEEeCCCCCCCCChhhhcCCcccce
Confidence            4999999999999999777666555554

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=85.16  E-value=0.78  Score=34.97  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             ceEEEcCeeeeCCCCCcccCCCCCcceE
Q 015103            2 YKFYVDGEWRHDENQPHVSGNYGVVNCV   29 (413)
Q Consensus         2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~   29 (413)
                      |+|.|||.|..||..|...-..|..-+.
T Consensus        56 Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858          56 YSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             EEEEECCeEecCCCCCceeeccccccee
Confidence            8999999999999999877555554443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		7e-34
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		6e-24
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		6e-24
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		4e-23
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		5e-23
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-13
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		7e-13
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-12
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		3e-08
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		7e-07
3fhm_A	165	Crystal Structure Of The Cbs-Domain Containing Prot		7e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  141 bits (356), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 39/333 (11%)
Query: 79  SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 138
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 139 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 198
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 199 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 258
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 259 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 318
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240
Query: 319 SRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMER 378
           S+ D+  LA +K Y  +   ++++ +ALQ     + S  F G     C   + L  ++ R
Sbjct: 241 SKFDVINLAAEKTYNNL---DVSVTKALQ-----HRSHYFEG--VLKCYLHETLEAIINR 290
Query: 379 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           L    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 291 LVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 34/334 (10%)
Query: 78  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 137
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 138 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
            DF+ +++      S+  E   E        + K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 231 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 280
Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 281 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 34/334 (10%)
Query: 78  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 137
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 138 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
            DF+ +++      S+  E   E        + K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPEAIAE--------IDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 318 YSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVME 377
           Y   D+  L +D  Y+ +   ++++ +AL L + AN    F+G     C  +D L  + +
Sbjct: 232 YESVDVMHLIQDGDYSNL---DLSVGEAL-LKRPAN----FDG--VHTCRATDRLDGIFD 281
Query: 378 RLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            + +  V RL +V+   K +EGI+SL+D+  +++
Sbjct: 282 AIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 72  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 131
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 132 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 182
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 242
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 243 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 297
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 298 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 357
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 268
Query: 358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 269 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 167/354 (47%), Gaps = 65/354 (18%)
Query: 72  QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 131
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 132 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 182
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 242
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 243 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 297
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 298 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 357
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D      
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSD-----D 261
Query: 358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           F G     C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 262 FEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 332
           I + N +   M  P   +   + +L Q  VSS+PI+D+N  L+++Y   D+  L K   Y
Sbjct: 16  ITQDNMKSCQMTTPVIDV---IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY 72
Query: 333 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 392
             + L   ++ +AL    D      F G     C ++D L  +M+ +    V R  +V+ 
Sbjct: 73  NDLSL---SVGEALMRRSD-----DFEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVD- 121
Query: 393 GSKRVEGIISLSDVFRFLL 411
              R+ G+++LSD+ +++L
Sbjct: 122 DVGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 297 LVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 356
           L Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D     
Sbjct: 37  LTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALXRRSDD---- 89
Query: 357 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            F G     C ++D L  + + +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 90  -FEG--VYTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein Atu1752 From Agrobacterium Tumefaciens Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 325
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV- 80
Query: 326 LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVR 385
               KA A           A  L Q  + ++  N  RCQ    +D L ++M      G  
Sbjct: 81  ----KAVAG--------QGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIM----TGGRF 124
Query: 386 RLVIVEAGSKRVEGIISLSDVFRFLLG 412
           R V VE  + R+ GIIS+ DV +  +G
Sbjct: 125 RHVPVEE-NGRLAGIISIGDVVKARIG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-65
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-64
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-31
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-27
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	7e-20
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	6e-12
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	6e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-09
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-05
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-04
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-09
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-08
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	5e-08
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	6e-05
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	2e-07
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-06
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	5e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	8e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-04
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	7e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	7e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  229 bits (585), Expect = 2e-72
 Identities = 73/345 (21%), Positives = 155/345 (44%), Gaps = 36/345 (10%)

Query: 68  EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 127
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 128 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 186
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 246
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 247 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 306
            K       +L+ P++ + +GTW                    +   + +L + ++S++P
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAEKNISAVP 220

Query: 307 IVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMC 366
           IV+   +LL++Y   D+  L +D  Y+ + L   ++ +AL                   C
Sbjct: 221 IVNSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFD-------GVHTC 270

Query: 367 LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
             +D L  + + + +  V RL +V+  + ++EGI+SL+D+  +++
Sbjct: 271 RATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  210 bits (535), Expect = 5e-65
 Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 41/354 (11%)

Query: 58  MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 117
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 118 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 177
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 237
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 238 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 297
            ILK +             + + +  +Q+GT+            AM+R T  +  AL + 
Sbjct: 170 RILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIF 219

Query: 298 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 357
           VQ  VS++P+VD+   ++DIYS+ D+  LA +K Y  +    +++ +ALQ        + 
Sbjct: 220 VQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD---VSVTKALQHRSHYFEGV- 275

Query: 358 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
                   C   + L  ++ RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 276 ------LKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV 322

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  208 bits (530), Expect = 2e-64
 Identities = 79/352 (22%), Positives = 156/352 (44%), Gaps = 37/352 (10%)

Query: 60  PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 119
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 120 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 179
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 180 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 239
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 240 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 299
           LK +  + + +      L+ P+  + + T                + T  +   + +L Q
Sbjct: 172 LKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQ 218

Query: 300 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 359
             VSS+PI+D+N  L+++Y   D+  L K   Y  + L   ++ +AL    D        
Sbjct: 219 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFE----- 270

Query: 360 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
                 C ++D L  +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 271 --GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  114 bits (287), Expect = 8e-31
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 20/157 (12%)

Query: 255 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 314
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 315 LDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK 374
           +++Y   D+  L K   Y  + L    + +AL    D       + +    C ++D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSD-------DFEGVYTCTKNDKLST 104

Query: 375 VMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           +M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 247
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 248 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 301
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 302 VSSIPIVDDNDSLLDIYSRSDI 323
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 106 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 162
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 163 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 222
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 223 -PAGSCQEILYLASLSDILKCI 243
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  107 bits (270), Expect = 5e-27
 Identities = 40/317 (12%), Positives = 101/317 (31%), Gaps = 48/317 (15%)

Query: 94  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 153
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 154 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 213
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 214 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 273
             PI++         +++ L +  D+++ +      +      + + V            
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA--------- 161

Query: 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA 333
                       P   L      +V+     +P+V +   L+ I + +D   L       
Sbjct: 162 -----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAF 209

Query: 334 QIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 393
             H+   N+ +   +            +        D L K+ E +    +  L +V+  
Sbjct: 210 N-HMQTGNVREITNV-----RMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263

Query: 394 SKRVEGIISLSDVFRFL 410
            + ++GII+  DV ++ 
Sbjct: 264 LR-IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 5/143 (3%)

Query: 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAK 328
           V  +  A  +    + PT ++  AL  + +     +P+V+  N+ ++ I +  DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 329 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 388
                  +      H+   L     P      +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 389 IVEAGSKRVEGIISLSDVFRFLL 411
           IV   ++ +  +I+  DV R LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 33/321 (10%), Positives = 94/321 (29%), Gaps = 62/321 (19%)

Query: 94  SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 153
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 154 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 213
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 214 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 273
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAY 332
                     +     L  A+ L+++     +P++DD++ ++ I +  +    LAK    
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 218

Query: 333 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 392
                    + + +        +L               +++    +    +  L+I+  
Sbjct: 219 LDPDYFYGKVVKDV-----MVTNL-------VTIDELASVNRAAAEMIVKRIGSLLILNK 266

Query: 393 GSKRVEGIISLSDVFRFLLGV 413
            +  + GII+  D+   L  +
Sbjct: 267 DNT-IRGIITERDLLIALHHI 286

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 64.8 bits (157), Expect = 6e-12
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 17/91 (18%)

Query: 1   MYKFYVDGEWRHDENQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMR 59
            YK+ +DGEW H+E +P +  N  G  N  Y  V      P ++   T   +  +D  + 
Sbjct: 220 EYKYIIDGEWTHNEAEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELL 275

Query: 60  PEGFAQYSEADLQLSRDRISSFLSTHTVYEL 90
            E             R ++  FL T +  E+
Sbjct: 276 EE------------ERSKLIQFLETCSEAEV 294

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 22/134 (16%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIH 336
                +    +L +A   + + D+ ++PI  D+D L  + +  DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 337 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 396
             E+       +  +A                   + +++  +    VRR+ ++     R
Sbjct: 76  AGELARDSIYYVDANA------------------SIQEMLNVMEEHQVRRVPVISEH--R 115

Query: 397 VEGIISLSDVFRFL 410
           + GI++ +D+ R L
Sbjct: 116 LVGIVTEADIARHL 129

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 26/136 (19%), Positives = 62/136 (45%), Gaps = 25/136 (18%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHL 337
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI   +        I +
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 74

Query: 338 DE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 395
           +  M            N           +    + PL +V+ ++A   ++ ++I E G  
Sbjct: 75  ERIMT----------RNL----------ITANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 396 RVEGIISLSDVFRFLL 411
           ++ GI +LSD+     
Sbjct: 113 KIVGIFTLSDLLEASR 128

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 13/138 (9%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIH 336
                L     L   + ++   DV+  P+V+  +S  L+ I  R+ +    + +  ++  
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 337 LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVIVEAGSK 395
             +  +   L  G    P          + L S+  LH+         ++ L +   G  
Sbjct: 81  GHQQCLQDILARGCPTEPV--------TLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-- 130

Query: 396 RVEGIISLSDVFRFLLGV 413
           R  G +S  ++ + +  +
Sbjct: 131 RAVGCVSWVEMKKAISNL 148

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 20/132 (15%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
           E  +                           + L   +  +A      + + +    R E
Sbjct: 72  EELLETVRSYRPG------------------EQLFDNLISVAAAKCSVVPLADE-DGRYE 112

Query: 399 GIISLSDVFRFL 410
           G++S   +  FL
Sbjct: 113 GVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 257
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 317
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 318 YSRSDI-TALAK 328
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT- 324
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+  
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 325 -ALAKDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANP 382
               +  A  Q  +   M            N            C  +    ++ME +   
Sbjct: 82  AVAGQGAASLQQSVSVAM----------TKNV---------VRCQHNSTTDQLMEIMTGG 122

Query: 383 GVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
             R + + E G  R+ GIIS+ DV +  +
Sbjct: 123 RFRHVPVEENG--RLAGIISIGDVVKARI 149

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 23/130 (17%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKDKAYAQIHLDE-M 340
           +    ++  A+ ++ +  +  + + DDN + + + S   I    + ++K   ++ +   M
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM 81

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400
                               +          +  V   L+  G+ R  +V+    RV GI
Sbjct: 82  R-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGI 121

Query: 401 ISLSDVFRFL 410
           ++L+D+ R+L
Sbjct: 122 VTLTDLSRYL 131

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 247
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 248 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 307
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 308 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 336
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 15/140 (10%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343
           ++P+ S+  AL LLV+  V+ +P++DDN +L+ + S  D+  LA D    +   D     
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDL--LALDSISGRSQNDTNLFP 76

Query: 344 QALQLGQDANPSLGFNGQRCQMCLR------------SDPLHKVMERLANPGVRRLVIVE 391
                 +  N       +     +             S  L      L     RRL +V+
Sbjct: 77  DVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 136

Query: 392 AGSKRVEGIISLSDVFRFLL 411
               ++ GI++  +V R  L
Sbjct: 137 -ADGKLIGILTRGNVVRAAL 155

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 21/132 (15%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDE-MN 341
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+  A    +    + +   M 
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 342 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK--RVEG 399
                       P++         C R D +  + + L    +  L +++   K   V G
Sbjct: 89  ----------RMPNITV-------CRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 400 IISLSDVFRFLL 411
            ++ +++ + L+
Sbjct: 132 RVTKTNMTKILV 143

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 54.2 bits (131), Expect = 3e-09
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 24/145 (16%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDIT-ALAK 328
           R  E   RP   L  TA++      L +  V    +   D+    + + S  DI  A+A+
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 329 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 388
                   +   N           +P            L +DP+H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN-----------SP---------ITVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 389 IVEAGSKRVEGIISLSDVFRFLLGV 413
           +V   +  + G++S+ D+      +
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAIL 129

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 25/145 (17%)

Query: 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALA 327
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D + L+ I +  D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 328 KDKAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRR 386
            DK      + E M                            ++     M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIM----------TRQV---------AYVDLNNTNEDCMALITEMRVRH 107

Query: 387 LVIVEAGSKRVEGIISLSDVFRFLL 411
           L +++ G  +V G++S+ D+ +  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 25/143 (17%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT--ALAKD 329
           +    +GR    +     +  A+ L+ +  + ++ +VD +D +  I +  D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 330 KAYAQIHLDE-MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLV 388
           ++     ++E M           A           +    S    + M  +    +R L 
Sbjct: 73  RSSKATRVEEIM----------TAKV---------RYVEPSQSTDECMALMTEHRMRHLP 113

Query: 389 IVEAGSKRVEGIISLSDVFRFLL 411
           +++ G  ++ G+IS+ D+ + ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 11/140 (7%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343
           +     +   +  +++  V+    V  ++ L+ +     +  ++    +  I  +E+   
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRS 88

Query: 344 QALQLGQD-----------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA 392
              +L               +                 PL + ++ + +  ++ + +V+ 
Sbjct: 89  SMKRLIAKNASEIMLDPVYVHM--------------DTPLEEALKLMIDNNIQEMPVVD- 133

Query: 393 GSKRVEGIISLSDVFRFLLG 412
               + G ++  ++   L  
Sbjct: 134 EKGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 247
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 248 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 307
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 308 VDDNDSLLDIYSRSDIT-ALAKDK 330
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 24/141 (17%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDK 330
            + E        +   A L     ++ + ++ S+ +VD  +  + I +  DI  A+ K K
Sbjct: 5   IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGK 63

Query: 331 AYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSD-PLHKVMERLANPGVRRLVI 389
           +      + M           A+           + +R D P+   +  +    +R L +
Sbjct: 64  SLETKAEEFMT----------ASL----------ITIREDSPITGALALMRQFNIRHLPV 103

Query: 390 VEAGSKRVEGIISLSDVFRFL 410
           V+     ++GIIS+ D+ R +
Sbjct: 104 VD-DKGNLKGIISIRDITRAI 123

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 302
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 303 SSIPIVDDNDSLLDIYSRSDIT 324
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 39/141 (27%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDE--- 339
            +    +  A   +++  +SS+P++DD + ++ I + +DI   L +DK   +  + +   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT 80

Query: 340 ---------MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIV 390
                     +I +A++                 M +                + +L +V
Sbjct: 81  KDVITIHEDASILEAIKK----------------MDISGKKEEI---------INQLPVV 115

Query: 391 EAGSKRVEGIISLSDVFRFLL 411
           +  + ++ GIIS  D+ R + 
Sbjct: 116 D-KNNKLVGIISDGDIIRTIS 135

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 27/138 (19%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D   L   +  +     + +  
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRD---LLAAQESSLQRSAQGDSL 74

Query: 344 QALQLGQD--------ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK 395
                  +          P                 L +    +    +  L +V     
Sbjct: 75  AFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVAKD-- 118

Query: 396 RVEGIISLSDVFRFLLGV 413
            + GII+ SD     + +
Sbjct: 119 VLVGIITDSDFVTIAINL 136

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 22/130 (16%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 342
           +  TASL   L   V+    S  +V +    + I +  D+  A+A+    A++ + E+  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKVWEVME 72

Query: 343 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 402
              + +   A                   + +  E++    V RL++ E     + G+IS
Sbjct: 73  RDLVTISPRA------------------TIKEAAEKMVKNVVWRLLVEEDD--EIIGVIS 112

Query: 403 LSDVFRFLLG 412
            +D+ R  + 
Sbjct: 113 ATDILRAKMA 122

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 309 DDNDSLLDIYSRSDIT-ALAKDK 330
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 283 MLRPTASLGSALALLVQADVSSIPIVDDNDS--LLDIYSRSDITALAKDKAYAQIHLDEM 340
           + + + ++     ++ +   S  P+V   +S  L+    R D+    ++    Q  +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRS-------DPLHKVMERLANPGVRRLVIVEAG 393
           +I    +      P      +   +   S        P+  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 394 SKRVEGIISLSDVFRFLLGV 413
             R+ GII+  DV + +  +
Sbjct: 149 --RLLGIITKKDVLKHIAQM 166

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 52/380 (13%), Positives = 100/380 (26%), Gaps = 108/380 (28%)

Query: 27  NCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLS--T 84
           +C  +     DM  + +S E     E+D ++M  +         +  +     + LS   
Sbjct: 34  DCKDV----QDMPKSILSKE-----EIDHIIMSKD--------AVSGTLRLFWTLLSKQE 76

Query: 85  HTVYELLPDSGKVTALDVNLA-VKQAFHVLYEQ-GLPMV-------PLWDD---FKGRFV 132
             V + + +      L +N   +         Q  +           L++D   F    V
Sbjct: 77  EMVQKFVEE-----VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 133 GVLSALDFILILRE----------------LGTNGSNLTEEELETHTISA-------W-K 168
              S L   L LR+                LG+  + +  +   ++ +         W  
Sbjct: 132 ---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 169 VGK---------LQLNLKRQMDGNG-----RPCPRPLVQAGPYDSLKEV--------ALK 206
           +           +   L  Q+D N            L        L+ +         L 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 207 ILQNKVATVPIIHSTGPAGSCQEILYL---ASLSDILKCICRHFKHSSSSLPILQQPVSS 263
           +L N V      ++     SC+ IL       ++D L                L      
Sbjct: 249 VLLN-VQNAKAWNAFN--LSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP-IVDDNDSLLDIYSRSD 322
             L  ++             L       +   L      S I   + D  +  D +   +
Sbjct: 305 SLLLKYL-------DCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHVN 351

Query: 323 ITALAK--DKAYAQIHLDEM 340
              L    + +   +   E 
Sbjct: 352 CDKLTTIIESSLNVLEPAEY 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 53/388 (13%), Positives = 109/388 (28%), Gaps = 112/388 (28%)

Query: 70  DLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG 129
           D +  +D   S LS   +  ++     V+           F  L  +   MV        
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR------LFWTLLSKQEEMVQ------- 80

Query: 130 RFVGVLSALDFILILRELGT--NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPC 187
           +FV  +  +++  ++  + T     ++            +     Q+  K  +       
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNV------- 131

Query: 188 PRPLVQAGPYDSLKEVALKILQ--NKVATVPIIHSTGPAGS---------CQ-------- 228
            R      PY  L++ AL  L+    V    +I   G  GS         C         
Sbjct: 132 SRL----QPYLKLRQ-ALLELRPAKNV----LID--GVLGSGKTWVALDVCLSYKVQCKM 180

Query: 229 --EILYL--------ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG 278
             +I +L         ++ ++L+ +      + +S        S+I+L     RI     
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS---DHSSNIKL-----RIHSIQA 232

Query: 279 RP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR-------SDITALAKD 329
                   +P  +      LLV  +V +    +      ++  +         +T     
Sbjct: 233 ELRRLLKSKPYEN-----CLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSA 283

Query: 330 KAYAQIHLDEMNI----HQALQL-----GQDAN--PSLGFNGQRCQMCLRSDPLHKVM-- 376
                I LD  ++     +   L            P         ++   + P    +  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--------EVLTTN-PRRLSIIA 334

Query: 377 ERLANPGVRRLVIVEAGSKRVEGIISLS 404
           E + +              ++  II  S
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESS 362

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 24/128 (18%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343
           +  +A++   L  + Q   +   + D       + ++ D+     D        +++++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDL----LDLDLDSSVFNKVSLP 81

Query: 344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 403
                                     D +   +          L +V+    R++G +SL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 404 SDVFRFLL 411
            D    L+
Sbjct: 122 HDFLEALI 129

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 28/132 (21%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM-- 340
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K   +   + M  
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIE---EIMTR 70

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400
           N+  A +                      +P+  V  +++   +  + +V+   +RV GI
Sbjct: 71  NVITAHE---------------------DEPVDHVAIKMSKYNISGVPVVD-DYRRVVGI 108

Query: 401 ISLSDVFRFLLG 412
           ++  D+ R   G
Sbjct: 109 VTSEDISRLFGG 120

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 1  MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 38
           YKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
           R   +++   +L  A  L+++ D   + +VD     + I +  DI    +          
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII---RRYFAKSEKYK 124

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
            + I    Q                 +     PL   ++ L       L +V++    + 
Sbjct: 125 GVEIEPYYQR-------------YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGN-LV 170

Query: 399 GIISLSDVFR 408
           GI+  +D+ R
Sbjct: 171 GIVDETDLLR 180

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 42/238 (17%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
           R +      D+LK+ A  +L+     V ++ S G      + + + ++ DI++      +
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG------KPVGILTVGDIIRRYFAKSE 121

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                                   I     R  +++     L +AL  L+ ++  ++P+V
Sbjct: 122 KYKGV------------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVV 163

Query: 309 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR 368
           D   +L+ I   +D+  L   +    +   E+      +   +++P+L F     Q+  +
Sbjct: 164 DSEGNLVGIVDETDL--LRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 369 ---------------SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
                             +H+V  ++A   + +L ++      + G+I   D+ + L+
Sbjct: 222 PVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 97  VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 156
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 157 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 216
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 217 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 259
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 319
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 320 RSDIT-ALAKDKA 331
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 30/131 (22%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM--- 340
           +   A+   AL L  +  V S P+V+    L+ I S   I  +  D    +  L  +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPD----EEQLAMLVKR 68

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400
           ++    +                     +D L K  + +     RR+V+V+    +  GI
Sbjct: 69  DVPVVKE---------------------NDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGI 106

Query: 401 ISLSDVFRFLL 411
           +++ D+ R   
Sbjct: 107 LTVGDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 96  KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 154
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 155 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 213
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 214 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 246
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 1   MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRP 60
            ++F VD E R  +  P  +   G     YI V QP+  P      +     +       
Sbjct: 54  RFRFIVDNELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDR 112

Query: 61  EGFAQYSEADLQLSRDRISSFLSTHT 86
              A     D     D  + F    +
Sbjct: 113 SSIALQIGKDPDDFGDGYTRFHEDLS 138

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMNI 342
           ++    L  AL +LV++  S+IP++D    L  + S + I   +   +      L+EM +
Sbjct: 30  VQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKV 89

Query: 343 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 402
            Q +   +   P L             D   K +E   +      +         EGI++
Sbjct: 90  EQVM---KQDIPVLKLE----------DSFAKALEMTID---HPFICAVNEDGYFEGILT 133

Query: 403 LSDVFRFL 410
              + + L
Sbjct: 134 RRAILKLL 141

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 86  TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 145
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 146 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 205
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 206 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 247
             + +    +  ++  G          + +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 247
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 248 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 307
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 308 VDDNDSLLDIYSRSDI 323
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 343
           ++P   L  AL +L +   S+IP++D +  L  + S + +  +       +I  + +   
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM--MDAILGLERIEFERLETM 83

Query: 344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISL 403
           +  ++     P L  +          D L K +  + N      V VE       GI + 
Sbjct: 84  KVEEVMNRNIPRLRLD----------DSLMKAVGLIVN---HPFVCVENDDGYFAGIFTR 130

Query: 404 SDVFRFL 410
            +V + L
Sbjct: 131 REVLKQL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 282 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEM 340
           A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      LD++
Sbjct: 27  AHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400
            + + +       P L  N          DP+ K    + N      V VE   +  EGI
Sbjct: 87  TVEEVM---LTDIPRLHIN----------DPIMKGFGMVIN---NGFVCVENDEQVFEGI 130

Query: 401 ISLSDVFRFL 410
            +   V + L
Sbjct: 131 FTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 196 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 255
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 256 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 315
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 316 DIYSRSDI 323
            I++R  +
Sbjct: 129 GIFTRRVV 136

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 37/262 (14%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 84  THTVYELLPD--SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 141
           +H V   + D    K+  L   +++K A++++ ++ L  +P+ D      +G+LS  +  
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNIT 60

Query: 142 LILRELGTNGSNLTEEELETHTISAWK-------------VGKLQLNLKRQMDGNGRPCP 188
               ++  +           + +                  GK+ +   +          
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +  AG    ++   ++        V ++  TG     +EI+ LA  ++I      H  
Sbjct: 121 GDIAIAGDRAEIQAELIE------LKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDS 174

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
            ++S L +   PV  +                   +     +      + +   S+ P++
Sbjct: 175 FTASRLIVQSLPVDYVM-----------TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223

Query: 309 DDNDSLLDIYSRSDITALAKDK 330
           D+N+ ++   +R  + +  K K
Sbjct: 224 DENNKVVGSIARFHLISTHKKK 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	100.0
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.96
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.91
3ddj_A	296	CBS domain-containing protein; structural genomics	99.89
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.87
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.86
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.85
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.85
4esy_A	170	CBS domain containing membrane protein; structural	99.82
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.78
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.76
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.76
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.76
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.76
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.75
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.74
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.74
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.74
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.73
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.73
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.73
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.73
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.72
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.72
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.72
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.71
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.71
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.71
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.7
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.7
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.7
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.7
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.69
4esy_A	170	CBS domain containing membrane protein; structural	99.69
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.69
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.69
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.68
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.67
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.67
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.67
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.66
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.65
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.65
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.65
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.64
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.61
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.61
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.61
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.61
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.61
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.61
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.6
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.6
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.6
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.6
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.59
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.59
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.59
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.59
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.58
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.58
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.58
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.58
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.57
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.57
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.57
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.57
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.57
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.56
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.56
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.56
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.56
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.56
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.56
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.55
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.54
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.53
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.52
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.52
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.52
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.51
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.51
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.51
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.5
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.49
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.44
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.43
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.36
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.36
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.34
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.34
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.3
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.28
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.26
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.25
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.24
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.23
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.22
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.21
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.19
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.14
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.1
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.92
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.92
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	98.88
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.86
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.83
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	98.7
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	98.62
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.59
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.55
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	94.22

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=4.3e-41  Score=324.58  Aligned_cols=305  Identities=26%  Similarity=0.459  Sum_probs=245.8

Q ss_pred             hHHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHh
Q 015103           68 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  147 (413)
Q Consensus        68 ~~~~~~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~  147 (413)
                      +++.+...+++.+||++++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++.++
T Consensus        13 ~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~   92 (323)
T 3t4n_C           13 SIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYY   92 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHH
Confidence            45556678999999999999999999999999999999999999999999999999998888999999999999988766


Q ss_pred             ccCCCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCc
Q 015103          148 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  227 (413)
Q Consensus       148 ~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~  227 (413)
                      +..+..  .+.++.+....|++......          .|.++++++.+++++.+|++.|.+++++++||++++...+ .
T Consensus        93 ~~~~~~--~~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~  159 (323)
T 3t4n_C           93 FSNPDK--FELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-R  159 (323)
T ss_dssp             HHCGGG--GGGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-C
T ss_pred             HcCcch--hHHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-c
Confidence            543322  23455556666766654432          6788999999999999999999999999999998632222 1


Q ss_pred             cceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc---CCCCceEecCCCCHHHHHHHHHhCCCCE
Q 015103          228 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA---NGRPFAMLRPTASLGSALALLVQADVSS  304 (413)
Q Consensus       228 ~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~---m~~~~~~v~~~~~l~~a~~~m~~~~~~~  304 (413)
                      .+++|++|.+|+++++..+...    ......+            ++++   |.++++++.+++++.+|++.|.++++++
T Consensus       160 ~~l~Givt~~di~~~l~~~~~~----~~~~~~~------------v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~  223 (323)
T 3t4n_C          160 EIVVSVLTQYRILKFVALNCRE----THFLKIP------------IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSS  223 (323)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCGG----GGGCCSB------------GGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSE
T ss_pred             cceEEEecHHHHHHHHHhcCCc----hhhhhCc------------HHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCE
Confidence            1299999999999998765432    1122223            3444   7778999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCC
Q 015103          305 IPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGV  384 (413)
Q Consensus       305 lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~  384 (413)
                      +||+|++|+++|++|.+|+++++..+.+...   +.++++++.....       ...++++|.+++++.+|+++|.++++
T Consensus       224 ~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~  293 (323)
T 3t4n_C          224 VPIIDENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARV  293 (323)
T ss_dssp             EEEECTTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCC
T ss_pred             EEEECCCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCC
Confidence            9999999999999999999997765543332   3578875542110       00268999999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          385 RRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       385 ~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      +++||+| ++|+++|+||.+||++++++
T Consensus       294 ~~l~Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          294 HRFFVVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             CEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            9999999 58999999999999999975

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=2.6e-35  Score=285.39  Aligned_cols=303  Identities=22%  Similarity=0.437  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhc
Q 015103           69 ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  148 (413)
Q Consensus        69 ~~~~~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~  148 (413)
                      .+.+...+.+.+||.+++++|+|+.+.++++++.+.|+.+|++.|.+++++++||||.+.++++|++|..|++.++....
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            44556788999999999999999999999999999999999999999999999999988788999999999998776543


Q ss_pred             cCCCCC-CHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCc--EEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCC
Q 015103          149 TNGSNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG  225 (413)
Q Consensus       149 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g  225 (413)
                      ...... ..+.+....+..+++....            +|..++  +++.+++++.+|++.|.+++++++||++++  .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~  151 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GE  151 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TT
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CC
Confidence            210000 0123345566666655432            345556  999999999999999999999999999752  11


Q ss_pred             -CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccc---cCCCCceEecCCCCHHHHHHHHHhCC
Q 015103          226 -SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE---ANGRPFAMLRPTASLGSALALLVQAD  301 (413)
Q Consensus       226 -~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~---~m~~~~~~v~~~~~l~~a~~~m~~~~  301 (413)
                       ....++|++|.+|+++++.......    .....            .+++   +|.+++.++.+++++.+|++.|.+++
T Consensus       152 ~~~~~~~Givt~~dl~~~~~~~~~~~----~~~~~------------~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~  215 (334)
T 2qrd_G          152 TGSEMIVSVLTQYRILKFISMNCKET----AMLRV------------PLNQMTIGTWSNLATASMETKVYDVIKMLAEKN  215 (334)
T ss_dssp             TTEEEEEEEEEHHHHHHHHHHHCGGG----GGCCC------------BGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHT
T ss_pred             cCccceEEEeeHHHHHHHHHhhccch----hhhhC------------cHHHhCCcccCCceEECCCCcHHHHHHHHHHcC
Confidence             0012999999999999886532110    11112            2333   47788999999999999999999999


Q ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhc
Q 015103          302 VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLAN  381 (413)
Q Consensus       302 ~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~  381 (413)
                      ++++||+|++|+++|++|.+|++..+..+.+...   +.++.+++.....   .  +  +++++|.+++++.+|++.|.+
T Consensus       216 ~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~~~---~--~--~~~~~v~~~~~l~~~~~~m~~  285 (334)
T 2qrd_G          216 ISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLKRPA---N--F--DGVHTCRATDRLDGIFDAIKH  285 (334)
T ss_dssp             CSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTTCCT---T--C--CCCCEECTTCBHHHHHHHHHH
T ss_pred             CcEEEEEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhcccc---c--C--CCCEEECCCCcHHHHHHHHHH
Confidence            9999999988999999999999987664432222   3567774431000   0  0  368899999999999999999


Q ss_pred             CCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          382 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       382 ~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ++++++|||| ++|+++|+||++||++++..
T Consensus       286 ~~~~~l~Vvd-~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          286 SRVHRLFVVD-ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             SCCCEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cCCCEEEEEC-CCCeEEEEEeHHHHHHHHHh
Confidence            9999999999 58999999999999999864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=7.3e-35  Score=281.87  Aligned_cols=300  Identities=31%  Similarity=0.544  Sum_probs=237.8

Q ss_pred             HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 015103           73 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  152 (413)
Q Consensus        73 ~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~  152 (413)
                      ..++.+..||++.+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++..+......+.
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            45677999999999999999999999999999999999999999999999999887789999999999987754321110


Q ss_pred             CCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEE
Q 015103          153 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  232 (413)
Q Consensus       153 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~G  232 (413)
                       ....++....++.|.+..            +.+|.++++++.+++++.+|++.|.+++++++||+|+  +.|   +++|
T Consensus       103 -~~~~~l~~~~~~~~~~~~------------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G  164 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY  164 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred             -cchhHHhhccHHHHHHHH------------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence             011233445566665432            2368899999999999999999999999999999953  135   7999


Q ss_pred             EeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103          233 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDN  311 (413)
Q Consensus       233 ivt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  311 (413)
                      ++|.+|+++++.......+. ......++.++.+          |. +++.++.+++++.+|++.|.+++++++||+|++
T Consensus       165 ivt~~dl~~~~~~~~~~~~~-~~~~~~~v~~~~v----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~  233 (330)
T 2v8q_E          165 ILTHKRILKFLKLFITEFPK-PEFMSKSLEELQI----------GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK  233 (330)
T ss_dssp             EECHHHHHHHHHHHSCSSSC-CGGGGSBHHHHTC----------SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT
T ss_pred             EEcHHHHHHHHHHHhhccCc-hhhhcCCHHHhcc----------cCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence            99999999988664332110 0112233333321          33 578899999999999999999999999999988


Q ss_pred             CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103          312 DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  391 (413)
Q Consensus       312 g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd  391 (413)
                      |+++|++|.+|++.....+.+...   +.++.+++....       .|.+++++|.+++++.+|+++|.+++++++||+|
T Consensus       234 ~~l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  303 (330)
T 2v8q_E          234 GRVVDIYSKFDVINLAAEKTYNNL---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  303 (330)
T ss_dssp             SBEEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEEEEEEHHHHHHHHhccccccc---cCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc
Confidence            999999999999886654322211   357777664321       3457899999999999999999999999999999


Q ss_pred             CCCCeEEEEEehHHHHHHhhc
Q 015103          392 AGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       392 ~~~~~liGvIS~~DIl~~l~~  412 (413)
                       ++|+++|+||.+||++++..
T Consensus       304 -~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          304 -EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             -TTSBEEEEEEHHHHHHHHHS
T ss_pred             -CCCcEEEEEeHHHHHHHHHh
Confidence             58999999999999999863

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=3.6e-32  Score=256.14  Aligned_cols=269  Identities=14%  Similarity=0.284  Sum_probs=208.5

Q ss_pred             cccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHH
Q 015103           86 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  165 (413)
Q Consensus        86 ~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~  165 (413)
                      ++.+.+.. .++++++.+.|+.+|++.|.+++++++||+|++.++++|++|..|++.++.....      ...+......
T Consensus         4 ~v~~~i~~-~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQN-KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHER   76 (280)
T ss_dssp             BGGGTSCC-SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTT
T ss_pred             hHHHHhcC-CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhcccc
Confidence            34555543 3799999999999999999999999999999866789999999999976531110      0111110000


Q ss_pred             HHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHh
Q 015103          166 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  245 (413)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~  245 (413)
                      ....   .     ....++++|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++..
T Consensus        77 ~~~~---~-----~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           77 NFLA---A-----INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             CHHH---H-----TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             chhH---H-----hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            0000   0     012234578889999999999999999999999999999965   45   89999999999987654


Q ss_pred             hccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          246 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                      ....        .            ..++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|++.
T Consensus       143 ~~~~--------~------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~  201 (280)
T 3kh5_A          143 KIDE--------N------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK  201 (280)
T ss_dssp             GSCT--------T------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred             cCCC--------C------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence            3211        1            13556688889999999999999999999999999999 5899999999999998


Q ss_pred             HHhhhhh-hhcc------cCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEE
Q 015103          326 LAKDKAY-AQIH------LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE  398 (413)
Q Consensus       326 ~~~~~~~-~~~~------l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~li  398 (413)
                      ....+.. ....      ..+.++.+             +|.+++++|++++++.+|++.|.+++++++||+| ++|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~  267 (280)
T 3kh5_A          202 LLGSDWAFNHMQTGNVREITNVRMEE-------------IMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIK  267 (280)
T ss_dssp             HHTSHHHHHHHHSCCTHHHHHCBHHH-------------HSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEE
T ss_pred             HHhhhhhhhhhcccchhhhhCCcHHH-------------HhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEE
Confidence            7653221 1100      00223433             6777899999999999999999999999999999 588999


Q ss_pred             EEEehHHHHHHh
Q 015103          399 GIISLSDVFRFL  410 (413)
Q Consensus       399 GvIS~~DIl~~l  410 (413)
                      |+||++||++++
T Consensus       268 Givt~~dil~~l  279 (280)
T 3kh5_A          268 GIITEKDVLKYF  279 (280)
T ss_dssp             EEEEHHHHGGGG
T ss_pred             EEEeHHHHHHhh
Confidence            999999999987

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=100.00  E-value=2e-32  Score=260.64  Aligned_cols=264  Identities=10%  Similarity=0.104  Sum_probs=210.1

Q ss_pred             hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhcc
Q 015103           84 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  163 (413)
Q Consensus        84 ~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~  163 (413)
                      ..++.|+|.  .++++++.+.|+.+|++.|.++++.++||+|   ++++|++|..|++..+......          ...
T Consensus        19 ~~~V~dim~--~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~----------~~~   83 (296)
T 3ddj_A           19 GMNIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD----------SCS   83 (296)
T ss_dssp             CSSGGGTCE--ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CC
T ss_pred             ccCHHHhcc--CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc----------ccc
Confidence            356888885  4799999999999999999999999999999   6799999999999765321100          001


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103          164 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  243 (413)
Q Consensus       164 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l  243 (413)
                      ...+...        ....++++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++
T Consensus        84 ~~~~~~~--------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           84 QGDLYHI--------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             HHHHHHH--------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             chhhHHH--------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence            1111111        012234578889999999999999999999999999999965   45   899999999998754


Q ss_pred             HhhccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH
Q 015103          244 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  323 (413)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl  323 (413)
                      ....                     ...+++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+
T Consensus       150 ~~~~---------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          150 KDLD---------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             GGSC---------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             hccc---------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            2211                     0124566688899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhcc---cCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEE
Q 015103          324 TALAKDKAYAQIH---LDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI  400 (413)
Q Consensus       324 ~~~~~~~~~~~~~---l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGv  400 (413)
                      +..+.... ....   ..+.++.+             +|.+++++|.+++++.+|++.|.+++++++||+| ++|+++|+
T Consensus       209 ~~~~~~~~-~~~~~~~~~~~~v~~-------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Gi  273 (296)
T 3ddj_A          209 IKQLAKAV-DKLDPDYFYGKVVKD-------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGI  273 (296)
T ss_dssp             HHHHHHHH-HHTCTHHHHTCBHHH-------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEE
T ss_pred             HHHHHHHH-hhcChhhhcCcCHHH-------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEE
Confidence            98665221 1110   01234544             6777899999999999999999999999999999 58999999


Q ss_pred             EehHHHHHHhhc
Q 015103          401 ISLSDVFRFLLG  412 (413)
Q Consensus       401 IS~~DIl~~l~~  412 (413)
                      ||++||++++..
T Consensus       274 it~~Dil~~l~~  285 (296)
T 3ddj_A          274 ITERDLLIALHH  285 (296)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EcHHHHHHHHHH
Confidence            999999999853

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.96  E-value=9.1e-30  Score=240.19  Aligned_cols=263  Identities=17%  Similarity=0.246  Sum_probs=182.4

Q ss_pred             ccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccHHH
Q 015103           87 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  166 (413)
Q Consensus        87 ~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i~~  166 (413)
                      +.|+|-  .++++++.+.|+.+|++.|.++++..+||+|.+ ++++|++|..|++..+..               .    
T Consensus         3 v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~~---------------~----   60 (282)
T 2yzq_A            3 VKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE---------------E----   60 (282)
T ss_dssp             HHHHSE--ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC--------------------------
T ss_pred             hHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhcc---------------C----
Confidence            344553  468889999999999999999999999999974 579999999998743210               0    


Q ss_pred             HHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-HHHh
Q 015103          167 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICR  245 (413)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-~l~~  245 (413)
                                     .++++|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++ ++..
T Consensus        61 ---------------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~  119 (282)
T 2yzq_A           61 ---------------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAK  119 (282)
T ss_dssp             ------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTT
T ss_pred             ---------------CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhc
Confidence                           012357777899999999999999999999999999975   35   8999999999987 5432


Q ss_pred             hccCCCCCcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH-
Q 015103          246 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-  324 (413)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~-  324 (413)
                      .  .     ...            ...++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|..|++ 
T Consensus       120 ~--~-----~~~------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          120 S--E-----KYK------------GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLR  180 (282)
T ss_dssp             C--S-----GGG------------GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGG
T ss_pred             c--C-----Ccc------------cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhh
Confidence            1  0     000            1235566888899999999999999999999999999999889999999999998 


Q ss_pred             -----HHHhhhh--hhh-c-ccCcccHHHHHh--cCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeC
Q 015103          325 -----ALAKDKA--YAQ-I-HLDEMNIHQALQ--LGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA  392 (413)
Q Consensus       325 -----~~~~~~~--~~~-~-~l~~~~v~~~l~--~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~  392 (413)
                           +......  ... . .+..........  .......+++ +|++++.+|++++++.+|+++|.+++++++||+| 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-  259 (282)
T 2yzq_A          181 DSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-  259 (282)
T ss_dssp             CGGGCC--------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-
T ss_pred             hhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-
Confidence                 3221000  000 0 000000000000  0001122343 8888999999999999999999999999999999 


Q ss_pred             CCCeEEEEEehHHHHHHhhc
Q 015103          393 GSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       393 ~~~~liGvIS~~DIl~~l~~  412 (413)
                      ++|+++|+||++||++++..
T Consensus       260 ~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          260 GEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             TTTEEEEEEEHHHHGGGGCC
T ss_pred             CCCCEEEEEeHHHHHHHHHh
Confidence            57899999999999998753

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.91  E-value=1.9e-23  Score=196.30  Aligned_cols=195  Identities=18%  Similarity=0.331  Sum_probs=156.3

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc-cccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP-VSSI  264 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~-i~~l  264 (413)
                      +|.++++++++++|+.+|+++|.+++++++||+++  ++|   +++|++|.+||++++......     ..+... ...+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~--~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNA--GNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECT--TTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEEC--CCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            67889999999999999999999999999999963  245   899999999999976432110     000000 0000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  344 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~  344 (413)
                       ......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++........     ..++++
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDE-----NEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCT-----TCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCC-----CCCHHH
Confidence             11112467788999999999999999999999999999999999999999999999999866533211     123333


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                   +|.+++.++.+++++.++++.|.+++.+++||++  +|+++|+||.+|+++++.
T Consensus       153 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 -------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             -------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             -------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence                         6777889999999999999999999999999996  689999999999999874

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.89  E-value=4.2e-23  Score=196.08  Aligned_cols=194  Identities=18%  Similarity=0.208  Sum_probs=157.8

Q ss_pred             CCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       181 ~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      -.++++|.++++++++++|+.+|++.|.+++++++||++     |   +++|++|.+||++++......        ...
T Consensus        20 ~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~   83 (296)
T 3ddj_A           20 MNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCS   83 (296)
T ss_dssp             SSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CC
T ss_pred             cCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------ccc
Confidence            344568999999999999999999999999999999994     4   899999999999865321110        000


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcc
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM  340 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~  340 (413)
                      ...+ ......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.......      ...
T Consensus        84 ~~~~-~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~~------~~~  156 (296)
T 3ddj_A           84 QGDL-YHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIF  156 (296)
T ss_dssp             HHHH-HHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGSC------CCC
T ss_pred             chhh-HHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhccc------ccc
Confidence            1100 001123577789889999999999999999999999999999998999999999999987554221      134


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      ++++             +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus       157 ~v~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          157 PVKV-------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             BHHH-------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             cHHH-------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            6666             5666889999999999999999999999999999 5899999999999998864

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.87  E-value=9.9e-22  Score=189.58  Aligned_cols=206  Identities=17%  Similarity=0.249  Sum_probs=159.8

Q ss_pred             CCC--CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          185 RPC--PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       185 ~~~--~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++|  ..+++++++++++.+|++.|.+++++++||+++  +.+   +++|++|.+|++.++...+....    .....+.
T Consensus        39 dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~----~~~~~l~  109 (330)
T 2v8q_E           39 DLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSAL----VQIYELE  109 (330)
T ss_dssp             GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHT----TTCCCGG
T ss_pred             hhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhccc----cchhHHh
Confidence            467  778999999999999999999999999999975  224   79999999999998765431100    0011122


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhh--hcccCc
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYA--QIHLDE  339 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~--~~~l~~  339 (413)
                      ...+..|...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|..|++.........  ...+..
T Consensus       110 ~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~  189 (330)
T 2v8q_E          110 EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMS  189 (330)
T ss_dssp             GCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGG
T ss_pred             hccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhc
Confidence            223344444567789999999999999999999999999999999998 89999999999999866432110  000112


Q ss_pred             ccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          340 MNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       340 ~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      .++.+.           .+|. +++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus       190 ~~v~~~-----------~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          190 KSLEEL-----------QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             SBHHHH-----------TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred             CCHHHh-----------cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence            334431           0243 5788999999999999999999999999999 5899999999999998764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.86  E-value=3.2e-21  Score=185.35  Aligned_cols=199  Identities=17%  Similarity=0.252  Sum_probs=150.5

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccc
Q 015103          188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  267 (413)
Q Consensus       188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~  267 (413)
                      ..++++++.++|+.+|++.|.+++++++||+++  +.+   +++|++|.+|++.++...+....     ....+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~--~~~---~lvGilt~~Dl~~~l~~~~~~~~-----~~~~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDS--KTS---RFAGLLTTTDFINVIQYYFSNPD-----KFELVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHCGG-----GGGGGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHcCcc-----hhHHHHHHHHH
Confidence            356889999999999999999999999999974  233   89999999999998765432210     00011111111


Q ss_pred             ccc--ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCc-----EEEEEeHHHHHHHHhhhhhhhcccCcc
Q 015103          268 TWV--PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS-----LLDIYSRSDITALAKDKAYAQIHLDEM  340 (413)
Q Consensus       268 ~~~--~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~-----lvGiit~~dl~~~~~~~~~~~~~l~~~  340 (413)
                      .+.  .++.++|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|++..+...... ..+.+.
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            111  1234557888999999999999999999999999999997775     99999999999866432211 111233


Q ss_pred             cHHHHHhcCCCCCCCccc---CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          341 NIHQALQLGQDANPSLGF---NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       341 ~v~~~l~~~~~~~~~~~~---m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      ++++             +   |.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus       188 ~v~~-------------~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          188 PIGD-------------LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             BGGG-------------TTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHH
T ss_pred             cHHH-------------cCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHh
Confidence            4444             4   677899999999999999999999999999999 5899999999999999874

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.85  E-value=1.1e-21  Score=184.69  Aligned_cols=173  Identities=16%  Similarity=0.230  Sum_probs=130.4

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++++++++.+|+++|.+++++++||+++   +|   +++|++|.+|+++.+.             .       
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~---~~~Giv~~~dl~~~~~-------------~-------   59 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------E-------   59 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhhhc-------------c-------
Confidence            57788999999999999999999999999999964   45   8999999999986321             1       


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQ  344 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~  344 (413)
                           .+++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++ .+..+...    .+.++++
T Consensus        60 -----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~----~~~~v~~  130 (282)
T 2yzq_A           60 -----EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKY----KGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGG----GGCBSTT
T ss_pred             -----CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCc----ccCcHHH
Confidence                 2345557778889999999999999999999999999998899999999999988 55432100    0123332


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103          345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  407 (413)
Q Consensus       345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl  407 (413)
                                   +|.++++++.+++++.++++.|.+++++++||+| ++|+++|+||..|++
T Consensus       131 -------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 -------------YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL  179 (282)
T ss_dssp             -------------TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred             -------------HhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence                         6777889999999999999999999999999999 589999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.85  E-value=1.5e-20  Score=181.46  Aligned_cols=208  Identities=15%  Similarity=0.162  Sum_probs=152.4

Q ss_pred             CCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          185 RPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       185 ~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++|.+  +++++++++|+.+|++.|.+++++++||+++  +.+   +++|+++.+|++.++.........  ......+.
T Consensus        26 dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~--~~~~~~~~   98 (334)
T 2qrd_G           26 DVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF--PEAIAEID   98 (334)
T ss_dssp             GGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC--GGGGGGGG
T ss_pred             hhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC--ccHHHHHh
Confidence            45654  4789999999999999999999999999975  234   899999999999877543221000  00000111


Q ss_pred             ccccccccccccccCCCCc--eEecCCCCHHHHHHHHHhCCCCEEEEEcCCC-c----EEEEEeHHHHHHHHhhhhhhhc
Q 015103          263 SIQLGTWVPRIGEANGRPF--AMLRPTASLGSALALLVQADVSSIPIVDDND-S----LLDIYSRSDITALAKDKAYAQI  335 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~----lvGiit~~dl~~~~~~~~~~~~  335 (413)
                      ...+..+....+++|.+++  +++.+++++.++++.|.+++++++||+|++| +    ++|++|..|++.....+... .
T Consensus        99 ~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~-~  177 (334)
T 2qrd_G           99 KFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE-T  177 (334)
T ss_dssp             SCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-G
T ss_pred             hhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-h
Confidence            1112222222234466666  8999999999999999999999999998765 4    99999999999866532111 1


Q ss_pred             ccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          336 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       336 ~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      .+...++++..          .+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus       178 ~~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          178 AMLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GGCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred             hhhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence            11123333300          03677899999999999999999999999999999 5899999999999999864

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.82  E-value=2.4e-20  Score=162.67  Aligned_cols=137  Identities=16%  Similarity=0.278  Sum_probs=105.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh-hccc--Cccc---HHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QIHL--DEMN---IHQA  345 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~-~~~l--~~~~---v~~~  345 (413)
                      +++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++........ ...+  ....   ....
T Consensus        19 ~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
T 4esy_A           19 PIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHL   98 (170)
T ss_dssp             BGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHH
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhh
Confidence            46778999999999999999999999999999999999999999999999998643211100 0000  0000   0111


Q ss_pred             HhcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          346 LQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       346 l~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ...  ....+++ +|++++++|++++++.+|+++|.+++++++||+|  +|+++|+||++||+++|+.
T Consensus        99 ~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           99 FET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             hcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence            100  0112333 8889999999999999999999999999999999  4899999999999999864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.78  E-value=6.1e-19  Score=151.65  Aligned_cols=123  Identities=18%  Similarity=0.266  Sum_probs=100.5

Q ss_pred             ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103          273 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       273 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      ++++|.  .+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........+.+.++.+      
T Consensus        17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~------   90 (156)
T 3k6e_A           17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH------   90 (156)
T ss_dssp             GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGG------
T ss_pred             HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHH------
Confidence            344464  478999999999999999999999999999989999999999999986653322211112334433      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                             +|.+++.++++++++.+|++.|.++++  +|||| ++|+++|+||++||++++.
T Consensus        91 -------im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 -------MTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             -------TCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -------hhcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence                   788899999999999999999998764  99999 6899999999999999984

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.78  E-value=1.6e-18  Score=147.37  Aligned_cols=119  Identities=16%  Similarity=0.305  Sum_probs=105.6

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.       +.++.+    
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----   92 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEE----   92 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGG----
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHH----
Confidence            57777987  89999999999999999999999999999987 89999999999998654321       234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +| ++++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus        93 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 ---------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ---------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             ---------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     67 6889999999999999999999999999999 58999999999999999976

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=1.9e-18  Score=143.61  Aligned_cols=120  Identities=15%  Similarity=0.281  Sum_probs=104.5

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.  ..++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|++.....+.      .+.++.+    
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~----   76 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGA----   76 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHH----
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHH----
Confidence            5677788  456789999999999999999999999999987 89999999999998765332      1346666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +| +++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus        77 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           77 ---------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             ---------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence                     55 3578999999999999999999999999999 58999999999999999986

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.76  E-value=1.2e-18  Score=144.23  Aligned_cols=120  Identities=13%  Similarity=0.369  Sum_probs=101.9

Q ss_pred             cccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+.  ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++......      .+.++++    
T Consensus         4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~------~~~~v~~----   73 (127)
T 3nqr_A            4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDK----   73 (127)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC------CCCCHHH----
T ss_pred             CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC------CCCCHHH----
Confidence            466778854  8899999999999999999999999999987 89999999999987553221      1356666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|. ++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 ---------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ---------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     453 467999999999999999999999999999 58999999999999999876

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.76  E-value=3.2e-18  Score=142.35  Aligned_cols=122  Identities=11%  Similarity=0.190  Sum_probs=103.4

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+++ +|+++|++|.+|+++....+..    +...++.+    
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~----   74 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLR----   74 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHH----
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHH----
Confidence            4566785  46889999999999999999999999999975 5899999999999987654321    11234555    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus        75 ---------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           75 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ---------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                     45 4678999999999999999999999999999 58999999999999999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.76  E-value=4.2e-18  Score=139.44  Aligned_cols=119  Identities=19%  Similarity=0.368  Sum_probs=104.8

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..|+......+.        .++.+       
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~--------~~v~~-------   66 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNK--------KTIEE-------   66 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTC--------CBGGG-------
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcc--------cCHHH-------
Confidence            456779999999999999999999999999999999999999999999999998665321        23444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.+
T Consensus        67 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             ------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                  6667889999999999999999999999999999 58999999999999999864

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.76  E-value=7.9e-18  Score=146.97  Aligned_cols=119  Identities=18%  Similarity=0.329  Sum_probs=105.6

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.  ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|++.....+.       +.++.+    
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~----  111 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVD----  111 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGG----
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHH----
Confidence            5777898  778999999999999999999999999999987 99999999999998665321       234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus       112 ---------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          112 ---------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ---------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ---------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                     77 7899999999999999999999999999999 58999999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.75  E-value=7.4e-18  Score=141.85  Aligned_cols=123  Identities=17%  Similarity=0.212  Sum_probs=104.8

Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g--~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      +..+++++|.+++.++.+++++.+|++.|.+++++++||+|++|  +++|++|.+|++.....+...     +.++.+  
T Consensus         3 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~--   75 (141)
T 2rih_A            3 MAIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-----DGPAMP--   75 (141)
T ss_dssp             --CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-----TSBSGG--
T ss_pred             cceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCC-----CCCHHH--
Confidence            34567888999999999999999999999999999999999888  999999999999865432110     233433  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                 +|.+++.++.++ ++.+|++.|.+++.+++||+| ++|+++|+||.+||++++.
T Consensus        76 -----------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           76 -----------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             -----------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             -----------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHHH
Confidence                       677789999999 999999999999999999999 5899999999999987654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.74  E-value=4e-18  Score=141.46  Aligned_cols=118  Identities=14%  Similarity=0.325  Sum_probs=101.1

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.  ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+        +.++.+    
T Consensus         6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~----   73 (129)
T 3jtf_A            6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRS----   73 (129)
T ss_dssp             BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGG----
T ss_pred             CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHH----
Confidence            5677787  678899999999999999999999999999975 8999999999998754311        234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|. +++++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||++++++
T Consensus        74 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           74 ---------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ---------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ---------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     553 478999999999999999999999999999 58999999999999999976

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.74  E-value=1.8e-17  Score=136.14  Aligned_cols=121  Identities=19%  Similarity=0.243  Sum_probs=104.6

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+++.+|+++....+..    ..+.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~----~~~~~v~~-------   69 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   69 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCc----ccccCHHH-------
Confidence            35667888999999999999999999999999999999 8999999999999886543211    12356666       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|.+++.++.+++++.++++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus        70 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC-
T ss_pred             ------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                  5666899999999999999999999999999999 5 999999999999998864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.74  E-value=7e-18  Score=144.26  Aligned_cols=119  Identities=18%  Similarity=0.289  Sum_probs=104.0

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEE-cC-CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHh
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIV-DD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ  347 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~-~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~  347 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+ |+ +|+++|++|.+|++.....+.       +.++.+   
T Consensus        21 ~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~---   90 (153)
T 3oco_A           21 VASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKIST---   90 (153)
T ss_dssp             BHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGG---
T ss_pred             EeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHH---
Confidence            56677875  78999999999999999999999999999 65 489999999999998654321       234444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                +| ++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++++
T Consensus        91 ----------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           91 ----------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ----------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ----------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                      67 7899999999999999999999999999999 58999999999999999875

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.74  E-value=2.5e-18  Score=144.07  Aligned_cols=121  Identities=13%  Similarity=0.275  Sum_probs=101.3

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.  +++.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|+++....+...     +.++.+    
T Consensus         4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~-----~~~v~~----   74 (136)
T 3lfr_A            4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGD-----SDDVKK----   74 (136)
T ss_dssp             BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGG-----GCCGGG----
T ss_pred             ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCC-----CcCHHH----
Confidence            4667787  568899999999999999999999999999987 8999999999998855421111     234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|. +++++.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++++
T Consensus        75 ---------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           75 ---------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ---------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ---------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                     664 488999999999999999999999999999 58999999999999998875

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.74  E-value=2.8e-17  Score=137.57  Aligned_cols=122  Identities=19%  Similarity=0.355  Sum_probs=105.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHH-HHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl-~~~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+ ......+..     .+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   77 (138)
T 2p9m_A            9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYT-----LETTIGD------   77 (138)
T ss_dssp             BGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCC-----SSCBHHH------
T ss_pred             CHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhccc-----CCcCHHH------
Confidence            5667798899999999999999999999999999999988999999999999 775543211     1346666      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCC-----CCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPG-----VRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~-----~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                             +|.+++.++.+++++.+|++.|.+++     .+++||+| ++|+++|+||..||++++..
T Consensus        78 -------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           78 -------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             -------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             -------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHHh
Confidence                   66678899999999999999999999     99999999 58999999999999998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.73  E-value=3.2e-17  Score=141.27  Aligned_cols=125  Identities=22%  Similarity=0.228  Sum_probs=104.8

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh----cccCcccHHHHHh
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ----IHLDEMNIHQALQ  347 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~----~~l~~~~v~~~l~  347 (413)
                      +++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++..........    ....+.++.+   
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   82 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   82 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHH---
Confidence            567789888999999999999999999999999999998899999999999988654211100    0011234444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                +|.++++++.+++++.+|++.|.+++++++||+| + |+++|+||+.||++++.
T Consensus        83 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           83 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                      6777899999999999999999999999999999 5 99999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.73  E-value=1.5e-17  Score=141.30  Aligned_cols=127  Identities=22%  Similarity=0.350  Sum_probs=103.5

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh---------cccCcc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ---------IHLDEM  340 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~---------~~l~~~  340 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.+........         ....+.
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            56777877  7999999999999999999999999999998899999999999986432110000         000122


Q ss_pred             cHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       341 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ++.+             +|.++++++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus        86 ~v~~-------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGD-------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHH-------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHH-------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            3443             6777788999999999999999999999999999 58999999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=6.1e-18  Score=140.01  Aligned_cols=121  Identities=13%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+.+....+...     +.++++       
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   72 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTV-----KEKLGE-------   72 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCT-----TCBCCG-------
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcc-----cCcHHH-------
Confidence            567789999999999999999999999999999999998 9999999999998754322110     122333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++..
T Consensus        73 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           73 ------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHHT
T ss_pred             ------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence                  6777889999999999999999999999999999 58999999999999999854

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.73  E-value=3.4e-17  Score=137.10  Aligned_cols=121  Identities=18%  Similarity=0.355  Sum_probs=104.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++ +...+..     .+.++.+      
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~-----~~~~v~~------   76 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP-----YDIPVER------   76 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC-----TTSBGGG------
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCc-----ccCCHHH------
Confidence            567779889999999999999999999999999999998899999999999974 3332211     1234444      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                             +|.+++.++.+++++.+|++.|.+++++++ |+| ++|+++|+||..||++++..
T Consensus        77 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           77 -------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHHC
T ss_pred             -------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHHH
Confidence                   677789999999999999999999999999 999 58999999999999998864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=2.6e-17  Score=136.93  Aligned_cols=120  Identities=18%  Similarity=0.266  Sum_probs=104.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++.+|++.....+...     +.++.+       
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCc-----ccCHHH-------
Confidence            56777988999999999999999999999999999999 89999999999998866533111     234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                  6667889999999999999999999999999999 5899999999999999875

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.73  E-value=1.9e-17  Score=143.45  Aligned_cols=123  Identities=20%  Similarity=0.366  Sum_probs=105.4

Q ss_pred             cccccCCC---CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR---PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~---~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+   +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+..+.....   +.++.+    
T Consensus        25 ~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~---~~~v~~----   97 (165)
T 3fhm_A           25 FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASL---QQSVSV----   97 (165)
T ss_dssp             BHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGG---TSBGGG----
T ss_pred             CHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccc---cCCHHH----
Confidence            56777874   78999999999999999999999999999989999999999999986653321111   244544    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|.+++++|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++..
T Consensus        98 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           98 ---------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ---------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTTC
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence                     6777899999999999999999999999999999 5 999999999999999864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.72  E-value=4.1e-17  Score=137.37  Aligned_cols=126  Identities=25%  Similarity=0.475  Sum_probs=101.1

Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103          276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  355 (413)
Q Consensus       276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  355 (413)
                      +|.++++++.+++++.+|++.|.+++++++||+|++|+++|+++..|++.....+.+.   ..+.++.+++.....    
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~---~~~~~v~~~m~~~~~----   88 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYN---DLSLSVGEALMRRSD----   88 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC-----
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccc---cCCccHHHHHhcCcc----
Confidence            4677899999999999999999999999999999889999999999999866543211   114577775432100    


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                         -..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus        89 ---~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           89 ---DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             --------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             ---ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHHh
Confidence               001578999999999999999999999999999 58999999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=1.3e-17  Score=138.84  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=104.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHhcCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      +++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|++. +...+..    ..+.++.+      
T Consensus         9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~------   78 (133)
T 1y5h_A            9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLD----PNTATAGE------   78 (133)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCC----TTTSBHHH------
T ss_pred             CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCC----ccccCHHH------
Confidence            566778888999999999999999999999999999988899999999999984 4432211    11356666      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                             +|.+++.++++++++.+|++.|.+++.+++||+| + |+++|+||.+||++++.+
T Consensus        79 -------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           79 -------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             -------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             -------HhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                   5556788999999999999999999999999999 4 899999999999998764

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.72  E-value=4.2e-17  Score=140.32  Aligned_cols=122  Identities=17%  Similarity=0.359  Sum_probs=103.2

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.++ +++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.....+..    ..+.++.+       
T Consensus        18 ~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-------   85 (159)
T 3fv6_A           18 QVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQE----LTSVPVHI-------   85 (159)
T ss_dssp             BGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSC----TTTCBGGG-------
T ss_pred             CHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCc----ccCcCHHH-------
Confidence            566778875 599999999999999999999999999989999999999999986532211    11334544       


Q ss_pred             CCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCC---eEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSK---RVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~---~liGvIS~~DIl~~l~~  412 (413)
                            +|.+  ++.++.+++++.+|++.|.+++++++||+| ++|   +++|+||+.||++++..
T Consensus        86 ------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           86 ------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHHH
Confidence                  6666  788999999999999999999999999999 477   99999999999999853

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.72  E-value=3.5e-17  Score=139.18  Aligned_cols=119  Identities=12%  Similarity=0.242  Sum_probs=103.9

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++.+||+|++|+++|++|..|+++....+..    +.+.++.+     
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~-----   99 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD----MRDASIAD-----   99 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC----CTTCBHHH-----
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC----cccCcHHH-----
Confidence            67788998  89999999999999999999999999999989999999999999987653221    12456776     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                              +|.+++.++.+++++.+|++.|.+++++++||+|+ + +++|+||..||+++
T Consensus       100 --------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~a  149 (149)
T 3k2v_A          100 --------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLRA  149 (149)
T ss_dssp             --------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTCC
T ss_pred             --------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhcC
Confidence                    56667899999999999999999999999999993 4 99999999999853

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.72  E-value=2.4e-17  Score=140.13  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=102.9

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh-cccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-IHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~-~~l~~~~v~~~l~~  348 (413)
                      +++++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.......... ......++.+    
T Consensus        16 ~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   91 (150)
T 3lqn_A           16 FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ----   91 (150)
T ss_dssp             BHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG----
T ss_pred             ChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH----
Confidence            5667787  45899999999999999999999999999999999999999999998664221100 0011233433    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|.+++.++.+++++.+|++.|.++++  +|||| ++|+++|+||.+||++++..
T Consensus        92 ---------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           92 ---------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ---------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHHH
Confidence                     777789999999999999999999987  99999 58999999999999998853

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.71  E-value=8.9e-17  Score=138.46  Aligned_cols=132  Identities=14%  Similarity=0.232  Sum_probs=104.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|+  +|+++|++|..|+......+..........++.+.+...
T Consensus        14 ~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~   93 (164)
T 2pfi_A           14 RVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARG   93 (164)
T ss_dssp             BHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTT
T ss_pred             CHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhccc
Confidence            567789999999999999999999999999999999996  799999999999998664322111111234666655421


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .    +   ....+.++.+++++.+|++.|.+++.+++||+|  +|+++|+||++||++++.+
T Consensus        94 ~----~---~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           94 C----P---TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             C----C---CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             c----c---ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence            1    0   001167899999999999999999999999999  4899999999999998753

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.71  E-value=6.7e-17  Score=142.56  Aligned_cols=124  Identities=19%  Similarity=0.279  Sum_probs=105.6

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCC
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ  350 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~  350 (413)
                      .+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++..........   ...++.+      
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~---~~~~v~~------   79 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKP---DEVPIRL------   79 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCG---GGSBGGG------
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCc---ccCCHHH------
Confidence            4677789999999999999999999999999999999998899999999999988654211000   1234444      


Q ss_pred             CCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          351 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       351 ~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                             +|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||++++.
T Consensus        80 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           80 -------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             -------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             -------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                   6777899999999999999999999999999999 5799999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.71  E-value=2.2e-17  Score=144.55  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=103.1

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh--------h--cccCc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q--IHLDE  339 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~--------~--~~l~~  339 (413)
                      +++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++++.......        .  ..+..
T Consensus         5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (180)
T 3sl7_A            5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKT   84 (180)
T ss_dssp             BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCS
T ss_pred             eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhh
Confidence            46677887  789999999999999999999999999999999999999999998532100000        0  00000


Q ss_pred             c-cHHHHHhcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          340 M-NIHQALQLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       340 ~-~v~~~l~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      . .....+.  .....+++ +|.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++..
T Consensus        85 ~~~~~~~~~--~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           85 FNELQKLIS--KTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             HHHHHHHHH--TTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             hHHHHHHHh--ccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHHH
Confidence            0 0000000  01112333 7777889999999999999999999999999999 58999999999999999853

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.70  E-value=1.1e-16  Score=139.94  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|+  ++++++.+++++.+|+++|.+++++++||+|++ |+++|+++.+|++.....+.       ..++.     
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~-----  104 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN-----  104 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG-----
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH-----
Confidence            4666785  468899999999999999999999999999876 89999999999998654321       12222     


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                |.++++++.+++++.+|++.|.+++.+.+||+| ++|+++|+||+.||++++++
T Consensus       105 ----------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          105 ----------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      234688999999999999999999999999999 58999999999999999875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.70  E-value=8.4e-17  Score=134.24  Aligned_cols=121  Identities=12%  Similarity=0.244  Sum_probs=102.6

Q ss_pred             cccccCC---CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhhhcccCcccHHHHHh
Q 015103          272 RIGEANG---RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQ  347 (413)
Q Consensus       272 ~v~~~m~---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~-~~~~~~~~~~~l~~~~v~~~l~  347 (413)
                      +++++|.   +++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++ +...+..    ..+.++.+   
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~----~~~~~v~~---   78 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKP----VKDTQVKE---   78 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSC----GGGSBGGG---
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCC----cccCCHHH---
Confidence            4567787   7899999999999999999999999999998 899999999999986 3332210    11234444   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                +|.+++.++.+++++.+|++.|.+++.+++||+|  +|+++|+||.+||++++.+
T Consensus        79 ----------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ----------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ----------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ----------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence                      6777899999999999999999999999999999  4899999999999998864

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.70  E-value=1.8e-16  Score=146.34  Aligned_cols=200  Identities=12%  Similarity=0.094  Sum_probs=128.6

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC-----CCCc---
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-----SSSL---  254 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~-----~~~~---  254 (413)
                      +.++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++++.......     ....   
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            34588999999999999999999999999999999975   46   8999999999999875432110     0000   


Q ss_pred             ------cc------ccccccccccccc-cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---------
Q 015103          255 ------PI------LQQPVSSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND---------  312 (413)
Q Consensus       255 ------~~------~~~~i~~l~i~~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---------  312 (413)
                            ..      .....+.+.++.. ...+.+.+....+.+-.+  -.+++..+.+.+++++++++...         
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a  160 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA  160 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence                  00      0000011111111 112223344444444433  47888999999999998886321         


Q ss_pred             ---cEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCcccCC-CcceEEeCCCCHHHHHHHHhcCCCCEEE
Q 015103          313 ---SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV  388 (413)
Q Consensus       313 ---~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~sl~~~~~~m~~~~~~~l~  388 (413)
                         .+-.+.+..|.......-      ....++++             +|+ +++.++++++++.+|++.|.+++++++|
T Consensus       161 ~~~~~~~i~t~~d~~~~~~~~------~~~~~v~~-------------im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~p  221 (245)
T 3l2b_A          161 KKNNITVITTPHDSFTASRLI------VQSLPVDY-------------VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYP  221 (245)
T ss_dssp             HHHTCEEEECSSCHHHHHHHG------GGGSBHHH-------------HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEE
T ss_pred             HHcCCeEEEeCCChHHHHHHH------hcCCceee-------------EecCCccEEECCCCcHHHHHHHHHhcCCceEE
Confidence               122233333322211100      00223444             787 7899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEehHHHHHHh
Q 015103          389 IVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       389 VVd~~~~~liGvIS~~DIl~~l  410 (413)
                      |+| ++|+++|+||++|++++.
T Consensus       222 Vvd-~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          222 VID-ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             EEC-TTCBEEEEEECC------
T ss_pred             EEc-CCCeEEEEEEHHHhhchh
Confidence            999 589999999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.70  E-value=1.1e-16  Score=136.95  Aligned_cols=125  Identities=18%  Similarity=0.199  Sum_probs=102.6

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++.....+. +....+...++.+    
T Consensus        12 ~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~----   87 (157)
T 2emq_A           12 TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE----   87 (157)
T ss_dssp             BSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG----
T ss_pred             cHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH----
Confidence            46667876  7889999999999999999999999999998899999999999998654321 1000011233333    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                               +|.+++.++.+++++.+|++.|.++++  +||+| ++|+++|+||.+||++++..
T Consensus        88 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           88 ---------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHHH
T ss_pred             ---------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHHH
Confidence                     777789999999999999999999987  99999 58999999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.70  E-value=1.6e-16  Score=136.30  Aligned_cols=125  Identities=9%  Similarity=0.142  Sum_probs=104.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCE-EEEEcCCCcEEEEEeHHHHHHHHhhhh---hhh--------cccCc
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSS-IPIVDDNDSLLDIYSRSDITALAKDKA---YAQ--------IHLDE  339 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~g~lvGiit~~dl~~~~~~~~---~~~--------~~l~~  339 (413)
                      +++++|.++++++.+++++.+|++.|.+++++. +||+|++ +++|++|..|++.......   ...        ....+
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            677889999999999999999999999999999 9999977 9999999999988543110   000        00112


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       340 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .++.+             +|.+ ++++++++++.+|++.|.+++++++||+| ++|+++|+||+.||++++..
T Consensus        96 ~~v~~-------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           96 KNASE-------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CBHHH-------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             CcHHH-------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHHH
Confidence            33444             7777 88999999999999999999999999999 58999999999999998853

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.69  E-value=1e-16  Score=137.71  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=103.5

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~-~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++....... +........++.+    
T Consensus        15 ~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~----   90 (159)
T 1yav_A           15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   90 (159)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             hHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH----
Confidence            56667877  8899999999999999999999999999998899999999999998664321 1001112345665    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                               +|.+++.++.+++++.+|++.|.++++  +||+| ++|+++|+||++||++++.
T Consensus        91 ---------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           91 ---------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                     666788999999999999999999987  99999 5899999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.69  E-value=2.1e-17  Score=143.92  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCC
Q 015103           73 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  152 (413)
Q Consensus        73 ~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~  152 (413)
                      ..++.+...|++.++.|+|.  .++++++.+.|+.+|++.|.++++.++||+|.+ ++++|++|..|++..+.....   
T Consensus         6 ~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~---   79 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI---   79 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH---
T ss_pred             HHHHHHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc---
Confidence            44677888899999999994  569999999999999999999999999999976 569999999999853321000   


Q ss_pred             CCCHHHHhh-ccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceE
Q 015103          153 NLTEEELET-HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  231 (413)
Q Consensus       153 ~l~~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~  231 (413)
                      ....+.+.. ............    .....++.+|.++++++.+++++.+|+++|.+++++++||+|+    |   +++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~lv  148 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFET----GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---VPV  148 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHH----HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---EEE
T ss_pred             cchhhhhhhccchhhHHhhhcc----ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---EEE
Confidence            000000000 001111111110    0111223478999999999999999999999999999999963    5   899


Q ss_pred             EEeehhhHHHHHH
Q 015103          232 YLASLSDILKCIC  244 (413)
Q Consensus       232 Givt~~dIl~~l~  244 (413)
                      |++|.+||++++.
T Consensus       149 Givt~~Dil~~l~  161 (170)
T 4esy_A          149 GIVTRRDLLKLLL  161 (170)
T ss_dssp             EEEEHHHHTTTSC
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999998653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.69  E-value=1.1e-16  Score=137.08  Aligned_cols=125  Identities=13%  Similarity=0.252  Sum_probs=104.5

Q ss_pred             ccccccccCC------CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccH
Q 015103          269 WVPRIGEANG------RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNI  342 (413)
Q Consensus       269 ~~~~v~~~m~------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v  342 (413)
                      +..+++++|.      +++.++.+++++.+|++.|.+++++++||++ +|+++|++|..|+++.+......   ..+.++
T Consensus         5 ~~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~---~~~~~v   80 (157)
T 4fry_A            5 MSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERS---SKATRV   80 (157)
T ss_dssp             --CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCC---SSSCBH
T ss_pred             HHHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCC---ccccCH
Confidence            3446777786      5679999999999999999999999999965 89999999999999865432211   114567


Q ss_pred             HHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          343 HQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       343 ~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .+             +|.+++.++.+++++.+|++.|.+++++++||+|  +|+++|+||++||++++..
T Consensus        81 ~~-------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           81 EE-------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             HH-------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred             HH-------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            66             6666788999999999999999999999999999  4999999999999999864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.69  E-value=2.1e-16  Score=142.02  Aligned_cols=116  Identities=16%  Similarity=0.207  Sum_probs=103.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC---CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQA---DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|+++++++.+++++.+|++.|.++   +++.+||+|++|+++|++|.+|++...          .+.++++    
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~----  120 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLIS----  120 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGG----
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHH----
Confidence            57788999999999999999999999987   899999999999999999999986421          0234444    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                               +|.++++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus       121 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          121 ---------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             ---------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                     7878899999999999999999999999999999 5899999999999999874

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.68  E-value=3.8e-16  Score=140.25  Aligned_cols=121  Identities=15%  Similarity=0.118  Sum_probs=106.5

Q ss_pred             ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC---CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCc
Q 015103          178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  254 (413)
Q Consensus       178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~---~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~  254 (413)
                      +....+|++|.++++++.+++|+.+|++.|.++   +++.+||+|+   .|   +++|++|.+|++..            
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------------  112 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKH------------  112 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTS------------
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhC------------
Confidence            677888999999999999999999999999987   8999999975   45   89999999998641            


Q ss_pred             ccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          255 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       255 ~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                       ...            ..++++|.++++++.+++++.+|++.|.++++..+||||++|+++|+||..|++..+..
T Consensus       113 -~~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          113 -EPH------------EPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             -CTT------------SBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             -CCc------------chHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence             011            24566698899999999999999999999999999999999999999999999997654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=3.4e-16  Score=141.49  Aligned_cols=156  Identities=15%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +..|.++++++.+++++.+|+++|.+++++.+||+|+   +|   +++|++|.+|+++++             ..     
T Consensus        16 ~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~-------------~~-----   71 (213)
T 1vr9_A           16 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLD-------------LD-----   71 (213)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSC-------------TT-----
T ss_pred             HHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhc-------------CC-----
Confidence            3468899999999999999999999999999999964   45   899999999987521             11     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  343 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~  343 (413)
                             ..++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++.......         ...
T Consensus        72 -------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~~  135 (213)
T 1vr9_A           72 -------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AMD  135 (213)
T ss_dssp             -------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C--
T ss_pred             -------CcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cCC
Confidence                   2356668889999999999999999999999999999998899999999999998654211         111


Q ss_pred             HHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEe
Q 015103          344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE  391 (413)
Q Consensus       344 ~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd  391 (413)
                      +...       .  +   .+.+.....++.+|.+.|.+++++.++|++
T Consensus       136 ~~~~-------~--l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          136 VPGI-------R--F---SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             ------------------------------------------------
T ss_pred             CCcE-------E--E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            1000       0  0   011113334599999999999999999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.67  E-value=9.2e-17  Score=137.81  Aligned_cols=114  Identities=11%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             cccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          272 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ ++++|++|.+|++.....+       .+.++.+    
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~----  107 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKS----  107 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHH----
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHH----
Confidence            57777876  78899999999999999999999999999977 4999999999998854332       1346666    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF  407 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl  407 (413)
                               +|. +++++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||+
T Consensus       108 ---------im~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 ---------ILR-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             ---------HCB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             ---------HcC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                     553 478999999999999999999999999999 589999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=1.8e-16  Score=143.26  Aligned_cols=121  Identities=14%  Similarity=0.194  Sum_probs=104.6

Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          267 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       267 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      .+|..+++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+.....          +.++.+  
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~--   76 (213)
T 1vr9_A            9 HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN--   76 (213)
T ss_dssp             ----CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG--
T ss_pred             cccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHH--
Confidence            35667888889999999999999999999999999999999998899999999999876322          123443  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                 +|.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        77 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           77 -----------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             -----------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             -----------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                       7777899999999999999999999999999999 5799999999999999874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.66  E-value=7.2e-16  Score=130.75  Aligned_cols=118  Identities=14%  Similarity=0.128  Sum_probs=101.6

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++++....          .  
T Consensus        25 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~--   87 (148)
T 3lv9_A           25 IREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------K--   87 (148)
T ss_dssp             GGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------C--
T ss_pred             HHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------C--
Confidence            4557887  8999999999999999999999999999964  225   8999999999998765421          1  


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                                ..++++| +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus        88 ----------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           88 ----------IELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             ----------CCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred             ----------ccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                      2345558 78899999999999999999999999999998899999999999998654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=5.3e-16  Score=136.41  Aligned_cols=138  Identities=14%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             cccccCCCC----ceEe--cCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHH
Q 015103          272 RIGEANGRP----FAML--RPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH  343 (413)
Q Consensus       272 ~v~~~m~~~----~~~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~  343 (413)
                      +++++|.+.    ++++  .+++++.+|+++|.+++++++||+  |++|+++|++|..|++............+...+..
T Consensus        12 ~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           12 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             cHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            566778776    7788  999999999999999999999999  78899999999999998654321100000000000


Q ss_pred             HHH------hcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          344 QAL------QLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       344 ~~l------~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      .+.      ........+++ +|.++++++.+++++.+|++.|.+++.+++||+|  +|+++|+||+.||++++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            000      00000111222 7777899999999999999999999999999999  599999999999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.66  E-value=6.5e-16  Score=128.10  Aligned_cols=120  Identities=12%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             CCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccc
Q 015103          182 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  259 (413)
Q Consensus       182 ~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~  259 (413)
                      .++++|.  .+++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++++....         .. 
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~---------~~-   71 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGS---------GQ-   71 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTT---------TT-
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCC---------Cc-
Confidence            3556787  55779999999999999999999999999964  225   8999999999998764321         01 


Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       260 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                                 ..++++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        72 -----------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           72 -----------KQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             -----------SBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             -----------CCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence                       1344557 45789999999999999999999999999999999999999999998653

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.65  E-value=6.4e-16  Score=132.67  Aligned_cols=117  Identities=19%  Similarity=0.242  Sum_probs=97.3

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      .+++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++......        .....      
T Consensus        25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~--------~~~~~------   84 (156)
T 3k6e_A           25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLS--------QEIMA------   84 (156)
T ss_dssp             TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCC--------HHHHT------
T ss_pred             hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhcccc--------ccccc------
Confidence            57999999999999999999999999999965   45   899999999999987653211        00001      


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                       ...++++|.+++.++.+++++.+|+++|.++++  +||||++|+++|+||++|+++.+.
T Consensus        85 -~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           85 -DTDIVHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             -TSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -ccCHHHhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHH
Confidence             124566799999999999999999999987764  999999999999999999999664

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.65  E-value=5.4e-16  Score=126.78  Aligned_cols=114  Identities=20%  Similarity=0.325  Sum_probs=100.2

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|.+|+++++....                  
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~------------------   61 (122)
T 3kpb_A            6 ILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE---HG---KLVGIITSWDIAKALAQNK------------------   61 (122)
T ss_dssp             HCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT---TS---BEEEEECHHHHHHHHHTTC------------------
T ss_pred             hhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHHHHHHhcc------------------
Confidence            57888999999999999999999999999999975   45   8999999999998664310                  


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus        62 -----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           62 -----KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             -----CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred             -----cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence                 1345558788999999999999999999999999999998899999999999998654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.65  E-value=1.8e-15  Score=131.85  Aligned_cols=121  Identities=10%  Similarity=0.056  Sum_probs=102.9

Q ss_pred             CCCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccc
Q 015103          181 DGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ  258 (413)
Q Consensus       181 ~~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~  258 (413)
                      ..++++|.  .+++++.+++++.+|+++|.+++++++||+++  +.+   +++|++|.+|+++++....          .
T Consensus        42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~  106 (172)
T 3lhh_A           42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------R  106 (172)
T ss_dssp             -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------C
T ss_pred             CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------c
Confidence            34567888  78899999999999999999999999999964  225   8999999999998664310          1


Q ss_pred             ccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          259 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       259 ~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                                  ..++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++..+..
T Consensus       107 ------------~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          107 ------------LELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ------------CCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             ------------ccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence                        2355668 888999999999999999999999999999988999999999999996653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.64  E-value=3e-15  Score=138.16  Aligned_cols=140  Identities=16%  Similarity=0.290  Sum_probs=105.9

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC--CcEEEEEeHHHHHHHHhhhhh--hh------------
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKDKAY--AQ------------  334 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiit~~dl~~~~~~~~~--~~------------  334 (413)
                      .+++++|.++++++.+++++.+|.++|.+++++++||||++  ++++|+|+++||+.++.....  ..            
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEG   92 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC-
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcccccc
Confidence            46888999999999999999999999999999999999863  689999999999986543210  00            


Q ss_pred             ----------------cccCc---------------------------------------------------------cc
Q 015103          335 ----------------IHLDE---------------------------------------------------------MN  341 (413)
Q Consensus       335 ----------------~~l~~---------------------------------------------------------~~  341 (413)
                                      ..+.+                                                         ++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  172 (250)
T 2d4z_A           93 RNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLT  172 (250)
T ss_dssp             --------------------------------------------------------------------------CCSCCB
T ss_pred             cccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccC
Confidence                            00000                                                         00


Q ss_pred             HHHHHhc-CCCCCCCc---c-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          342 IHQALQL-GQDANPSL---G-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       342 v~~~l~~-~~~~~~~~---~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ..+.... ......++   . +|.+.++++.++++|.+|..+|...|++++||++  .|+++||||+.||+++|.+
T Consensus       173 ~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          173 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            0000000 00011233   1 5788899999999999999999999999999998  5999999999999999865

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.61  E-value=4.8e-16  Score=128.37  Aligned_cols=115  Identities=11%  Similarity=0.105  Sum_probs=95.1

Q ss_pred             CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.+  +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++++....         ..     
T Consensus         8 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~-----   68 (127)
T 3nqr_A            8 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EA-----   68 (127)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CC-----
T ss_pred             hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CC-----
Confidence            4664  4899999999999999999999999999964  225   8999999999987432110         01     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                             ..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+
T Consensus        69 -------~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           69 -------FSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             -------CCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             -------CCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                   234555754 67899999999999999999999999999999999999999999854

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.61  E-value=6.4e-15  Score=122.28  Aligned_cols=119  Identities=21%  Similarity=0.303  Sum_probs=101.8

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++++|.++++++.+++++.+|++.|.+++++.+||+|    +|   +++|++|.+|+++++.....        ..    
T Consensus         6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~----   66 (133)
T 2ef7_A            6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LE----   66 (133)
T ss_dssp             GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TT----
T ss_pred             HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cc----
Confidence            3457888899999999999999999999999999996    24   89999999999987653210        01    


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                              ..++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+.
T Consensus        67 --------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           67 --------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             --------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             --------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                    2355568778899999999999999999999999999998899999999999998665

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.61  E-value=2.1e-15  Score=124.87  Aligned_cols=114  Identities=10%  Similarity=0.106  Sum_probs=94.5

Q ss_pred             CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.  .+++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|.+|+++++..           ..     
T Consensus        10 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~-----   68 (129)
T 3jtf_A           10 IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PA-----   68 (129)
T ss_dssp             HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TT-----
T ss_pred             hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CC-----
Confidence            566  67889999999999999999999999999964  225   89999999999874310           01     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                             ..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus        69 -------~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           69 -------LDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             -------SCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             -------cCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                   124455654 789999999999999999999999999998899999999999998654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.61  E-value=2.7e-15  Score=123.95  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.+++.++.+++++.+|++.|.+++++.+||+|+    |   +++|++|.+|+++.+...             .   
T Consensus         8 ~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~----~---~~~Givt~~dl~~~~~~~-------------~---   64 (128)
T 3gby_A            8 SYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG----E---RYLGMVHLSRLLEGRKGW-------------P---   64 (128)
T ss_dssp             GGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHTTCSSS-------------C---
T ss_pred             HHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHHHhhC-------------C---
Confidence            4578899999999999999999999999999999963    4   899999999998732110             0   


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                          .....++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        65 ----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           65 ----TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             ----CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                0012356668889999999999999999999999999999999999999999999998664

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.61  E-value=2.7e-15  Score=122.98  Aligned_cols=116  Identities=17%  Similarity=0.232  Sum_probs=99.3

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|    +|   +++|++|.+|+++++.....       ...       
T Consensus         6 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~-------   64 (125)
T 1pbj_A            6 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAE-------   64 (125)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTT-------
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccc-------
Confidence            5778899999999999999999999999999996    25   89999999999987654211       011       


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ..++++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|++..+.
T Consensus        65 -----~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           65 -----VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             -----SBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             -----cCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence                 2355668888999999999999999999999999999997 99999999999998664

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.61  E-value=2e-15  Score=142.63  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=104.1

Q ss_pred             ccccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103          271 PRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  345 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~  345 (413)
                      .+++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+ 
T Consensus       137 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~-  205 (286)
T 2oux_A          137 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIAD-  205 (286)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHH-
T ss_pred             HHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHH-
Confidence            467788999999999999999999999987     788899999899999999999987631          1346666 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                  +|.++++++++++++.+|++.|.+++.+++|||| ++|+++|+||..||++++.
T Consensus       206 ------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          206 ------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                        6667899999999999999999999999999999 5899999999999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.60  E-value=1.8e-15  Score=129.15  Aligned_cols=116  Identities=11%  Similarity=0.126  Sum_probs=99.5

Q ss_pred             CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEE-ecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVv-d~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      +|.+  +++++.+++++.+|++.|.+++++++||+ ++  +.|   +++|++|.+|+++++....          .    
T Consensus        25 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~----   85 (153)
T 3oco_A           25 VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------K----   85 (153)
T ss_dssp             HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------T----
T ss_pred             EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------C----
Confidence            5664  78999999999999999999999999999 43  124   8999999999998765421          1    


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                              ..++++| +++.++.+++++.+|+++|.+++++.+||+|++|+++|++|..|++..+..
T Consensus        86 --------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 --------AKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             --------SBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             --------CcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence                    2355568 789999999999999999999999999999989999999999999996653

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.60  E-value=2e-15  Score=125.34  Aligned_cols=118  Identities=8%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.  .+++++.+++++.+|+++|.+++++++||+++  +.|   +++|++|.+|+++++....       .     .. 
T Consensus         7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~-------~-----~~-   68 (130)
T 3hf7_A            7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKK-------E-----FT-   68 (130)
T ss_dssp             HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSS-------C-----CC-
T ss_pred             hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccC-------c-----cc-
Confidence            454  46899999999999999999999999999953  234   8999999999998654310       0     00 


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ...++++| +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|++..+.
T Consensus        69 ------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           69 ------KEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             ------HHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ------hhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence                  11345557 56789999999999999999999999999999999999999999998654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.60  E-value=4.8e-15  Score=127.51  Aligned_cols=128  Identities=17%  Similarity=0.214  Sum_probs=103.9

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++++|.++++++.+++|+.+|+++|.+++++.+||+|+   +|   +++|++|.+|+++++...+.....      .  .
T Consensus         7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~------~--~   72 (160)
T 2o16_A            7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ------G--D   72 (160)
T ss_dssp             GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC--------------
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhccccc------c--c
Confidence            34578888999999999999999999999999999974   45   899999999999987653321100      0  0


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                         -......++++|.+++.++.+++++.+|+++|.+++++.+||+|+ |+++|+||..|++..+.
T Consensus        73 ---~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           73 ---SLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             ---chhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence               001123466779899999999999999999999999999999997 99999999999998654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.60  E-value=5.4e-15  Score=127.03  Aligned_cols=119  Identities=13%  Similarity=0.196  Sum_probs=99.5

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.++ +++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++....       ....     
T Consensus        20 ~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~-----   80 (159)
T 3fv6_A           20 KDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTS-----   80 (159)
T ss_dssp             GGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTT-----
T ss_pred             HHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccC-----
Confidence            4467764 59999999999999999999999999975   45   8999999999998663210       0011     


Q ss_pred             cccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCC---cEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g---~lvGiit~~dl~~~~~  328 (413)
                             ..++++|.+  ++.++.+++++.+|+++|.+++++.+||+|++|   +++|++|..|++..+.
T Consensus        81 -------~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           81 -------VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence                   245566877  889999999999999999999999999999888   9999999999999665

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.60  E-value=3.7e-15  Score=140.22  Aligned_cols=117  Identities=18%  Similarity=0.272  Sum_probs=101.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|++|.+|++...          .+.++.+  
T Consensus       136 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~--  203 (278)
T 2yvy_A          136 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  203 (278)
T ss_dssp             BGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTT--
T ss_pred             hHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            56777999999999999999999999987     789999999889999999999997631          0233433  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                 +|.+++++|++++++.+|++.|.+++.+.+|||| ++|+++|+||..||++.+.+
T Consensus       204 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          204 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             -----------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC--
T ss_pred             -----------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHHH
Confidence                       7777899999999999999999999999999999 58999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.59  E-value=1.4e-15  Score=127.22  Aligned_cols=117  Identities=9%  Similarity=0.100  Sum_probs=96.2

Q ss_pred             CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.  .+++++.+++++.+|+++|.+++++++||+++  +.|   +++|++|.+|+++++...        ....     
T Consensus         8 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~--------~~~~-----   69 (136)
T 3lfr_A            8 IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKA--------DGDS-----   69 (136)
T ss_dssp             HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSS--------SGGG-----
T ss_pred             ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhc--------cCCC-----
Confidence            465  56899999999999999999999999999964  225   899999999998754210        0011     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                             ..++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..+.
T Consensus        70 -------~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           70 -------DDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             -------CCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             -------cCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                   234556755 889999999999999999999999999999999999999999998543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.59  E-value=6.4e-15  Score=123.02  Aligned_cols=119  Identities=20%  Similarity=0.334  Sum_probs=100.1

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhH-HHHHHhhccCCCCCccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dI-l~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      +++|.++++++.+++++.+|++.|.+++.+.+||+|+   +|   +++|++|.+|+ ++++...        ..      
T Consensus        11 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~--------~~------   70 (138)
T 2p9m_A           11 KDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDK--------YT------   70 (138)
T ss_dssp             GGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTC--------CC------
T ss_pred             HHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhc--------cc------
Confidence            4578889999999999999999999999999999975   45   89999999999 7754321        00      


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ....++++|.+++.++.+++++.+|++.|.+++     .+.+||+|++|+++|++|..|+++.+.
T Consensus        71 ------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           71 ------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             ------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence                  112455668888999999999999999999999     999999998899999999999998654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.59  E-value=1e-14  Score=121.80  Aligned_cols=121  Identities=15%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++++|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++.+....       .       
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~-------   68 (138)
T 2yzi_A            9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPG-------L-------   68 (138)
T ss_dssp             GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTC-------C-------
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcC-------C-------
Confidence            34578889999999999999999999999999999974   45   8999999999975221100       0       


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                           .....++++|.+++.++.+++++.+|++.|.+++.+.+ |+|++|+++|++|..|++..+..
T Consensus        69 -----~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           69 -----PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             -----CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             -----cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence                 01124566688899999999999999999999999999 99988999999999999997653

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.59  E-value=1.8e-14  Score=123.42  Aligned_cols=133  Identities=14%  Similarity=0.181  Sum_probs=102.8

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccE-EEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~-lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      +++|.++++++.+++++.+|++.|.+++++. +||+|+    +   +++|++|.+|+++++...+.........+.....
T Consensus        19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~   91 (157)
T 1o50_A           19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   91 (157)
T ss_dssp             TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence            4578999999999999999999999999999 999974    2   6999999999998765321000000000000000


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                          ......++++|.+ ++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++.+.
T Consensus        92 ----~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           92 ----RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             ----CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence                0112356777988 999999999999999999999999999998899999999999998664

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.58  E-value=2.1e-14  Score=120.60  Aligned_cols=119  Identities=18%  Similarity=0.267  Sum_probs=100.0

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.++++++.+++++.+|++.|.+++++.+||+|+   +| ..+++|++|.+|+++++.....        ..     
T Consensus         8 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~-~~~~~Givt~~dl~~~~~~~~~--------~~-----   70 (141)
T 2rih_A            8 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DN-PKRPVAVVSERDILRAVAQRLD--------LD-----   70 (141)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TE-EEEEEEEEEHHHHHHHHHTTCC--------TT-----
T ss_pred             HHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC-cceeEEEEEHHHHHHHHhcCCC--------CC-----
Confidence            4578889999999999999999999999999999975   21 1169999999999987643210        11     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                             ..++++|.+++.++.++ ++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..
T Consensus        71 -------~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           71 -------GPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             -------SBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             -------CCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence                   24556688899999999 999999999999999999999889999999999998744

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.58  E-value=3.7e-15  Score=126.50  Aligned_cols=122  Identities=15%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             CCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.  .+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++......          ....
T Consensus        20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~----------~~~~   83 (150)
T 3lqn_A           20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERI----------EFER   83 (150)
T ss_dssp             HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSB----------CGGG
T ss_pred             cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhccc----------chhH
Confidence            455  46899999999999999999999999999975   45   899999999999865321100          0000


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                          .....++++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|++|..|+++.+..
T Consensus        84 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           84 ----LEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ----GGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ----HhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence                01235667788899999999999999999999887  9999989999999999999997653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.58  E-value=2.2e-14  Score=124.00  Aligned_cols=115  Identities=17%  Similarity=0.263  Sum_probs=98.9

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      .+++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++......      ..           
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~-----------   91 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SL-----------   91 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GG-----------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cc-----------
Confidence            36899999999999999999999999999975   45   899999999999987653211      01           


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                       ..+++++|.++++++.+++++.+|+++|.+++++.+||+|+ |+++|++|..|++..+.
T Consensus        92 -~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           92 -QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             -TSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTT
T ss_pred             -cCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence             12455668888999999999999999999999999999998 99999999999999765

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.58  E-value=1.7e-14  Score=125.99  Aligned_cols=121  Identities=7%  Similarity=0.056  Sum_probs=100.7

Q ss_pred             CCCCCCCCC--CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccc
Q 015103          180 MDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL  257 (413)
Q Consensus       180 ~~~~~~~~~--~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~  257 (413)
                      ...++++|.  .+++++.+++++.+|+++|.+++++++||+++  +.|   +++|++|.+|+++++....          
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------   99 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------   99 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------
Confidence            345677886  46899999999999999999999999999964  225   8999999999998764321          


Q ss_pred             cccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          258 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       258 ~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      ..            .++  |.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       100 ~~------------~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          100 RV------------RRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             SC------------CGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             cc------------hhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence            11            122  23567899999999999999999999999999999999999999999997654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.57  E-value=1.3e-14  Score=127.68  Aligned_cols=123  Identities=13%  Similarity=0.116  Sum_probs=103.3

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  262 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~  262 (413)
                      ++++|.++++++.+++++.+|+++|.+++++++||+++   +|   +++|++|.+||++++.....      .       
T Consensus        11 v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~------~-------   71 (184)
T 1pvm_A           11 VEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNK------K-------   71 (184)
T ss_dssp             GGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCC------C-------
T ss_pred             HHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhccc------C-------
Confidence            34578889999999999999999999999999999964   45   89999999999986542100      0       


Q ss_pred             ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          263 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       263 ~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                           .....++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++..+..
T Consensus        72 -----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           72 -----PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             -----GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             -----cccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                 11124566788899999999999999999999999999999988999999999999885543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.57  E-value=8.9e-15  Score=124.17  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=98.8

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++.....       ...  
T Consensus        30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~--   94 (149)
T 3k2v_A           30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGVD-------MRD--   94 (149)
T ss_dssp             GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSSC-------CTT--
T ss_pred             HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCCC-------ccc--
Confidence            3457888  8999999999999999999999999999975   45   89999999999986643110       011  


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  325 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~  325 (413)
                                ..++++|.+++.++.+++++.+|++.|.+++++.+||+|++ +++|++|..|+++
T Consensus        95 ----------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           95 ----------ASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             ----------CBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             ----------CcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence                      24556688888999999999999999999999999999965 9999999999864

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.57  E-value=1e-14  Score=121.46  Aligned_cols=114  Identities=18%  Similarity=0.272  Sum_probs=96.6

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.+++++.+|++.|.+++++.+||+|    +|   +++|++|.+|+++.+.....      .            .
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~------------~   71 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------P------------V   71 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------C------------G
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------C------------c
Confidence            7899999999999999999999999999996    25   89999999999874432100      0            0


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      ....++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|.+|++..+.
T Consensus        72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHH
Confidence            12346667888999999999999999999999999999999 799999999999998654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.57  E-value=1.8e-14  Score=121.00  Aligned_cols=119  Identities=22%  Similarity=0.230  Sum_probs=97.0

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++.....      .....      
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~------   77 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSL------   77 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCS------
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCc------
Confidence            67788999999999999999999999999999975   45   89999999999987643110      00112      


Q ss_pred             cccccccccccCCC------CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGR------PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            .++++|.+      ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+++.+.
T Consensus        78 ------~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           78 ------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             ------BHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------cHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                  23444543      6889999999999999999999999999998899999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.56  E-value=1.1e-14  Score=123.39  Aligned_cols=133  Identities=18%  Similarity=0.260  Sum_probs=101.3

Q ss_pred             CCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccc
Q 015103          184 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  261 (413)
Q Consensus       184 ~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i  261 (413)
                      +++|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++......     ..+.. .
T Consensus         8 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~~-~   75 (152)
T 4gqw_A            8 GEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTW-----KTFNA-V   75 (152)
T ss_dssp             GGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CC-----HHHHH-H
T ss_pred             hhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcc-----cchHH-H
Confidence            456777  7999999999999999999999999999975   45   899999999998643211000     00000 0


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          262 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       262 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      ...........++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|+++.+.
T Consensus        76 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           76 QKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             HTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             HHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            0000001123566778888899999999999999999999999999998999999999999999665

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.56  E-value=2.6e-14  Score=122.16  Aligned_cols=125  Identities=15%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          183 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       183 ~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++.....        ..  
T Consensus        13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~--   76 (157)
T 2emq_A           13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLER--------IE--   76 (157)
T ss_dssp             STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSS--------BC--
T ss_pred             HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhcccc--------cc--
Confidence            4567876  8899999999999999999999999999975   45   89999999999985432100        00  


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      ...    .....++++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|++|.+|++..+..
T Consensus        77 ~~~----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           77 FER----LETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GGG----GGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             hHH----hcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            000    01234667788899999999999999999999987  9999988999999999999986653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.56  E-value=9.6e-14  Score=127.90  Aligned_cols=212  Identities=12%  Similarity=0.151  Sum_probs=131.2

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccH
Q 015103           85 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  164 (413)
Q Consensus        85 ~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i  164 (413)
                      .++.|+|-  .+++++..+.++.+|++.|.++++..+||+|.+ ++++|++|..|++..+......    ........++
T Consensus         7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~----~~~~~~~~~~   79 (245)
T 3l2b_A            7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDS----NILAKSATSL   79 (245)
T ss_dssp             CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCT----THHHHTTCCH
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhh----hhhhhccCCH
Confidence            56888884  568999999999999999999999999999975 5699999999999876532110    0111112222


Q ss_pred             HHHHHHHHhh--hcccc--------------CCCC-CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCC--
Q 015103          165 SAWKVGKLQL--NLKRQ--------------MDGN-GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG--  225 (413)
Q Consensus       165 ~~~~~~~~~~--~~~~~--------------~~~~-~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g--  225 (413)
                      ..+.+.....  .....              .... .......++.+ .+  -.++...+.+.+++.+++........  
T Consensus        80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence            2222211100  00000              0000 00112333333 22  47888888999999998874311000  


Q ss_pred             ----CccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccccccccccccCC-CCceEecCCCCHHHHHHHHHhC
Q 015103          226 ----SCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQA  300 (413)
Q Consensus       226 ----~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~~~  300 (413)
                          ....+..+.|..|........                     .....++++|+ +++.++.+++++.+|+++|.++
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~~---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~  215 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRLI---------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET  215 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHHG---------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHHH---------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHhc
Confidence                000233344444433321110                     11124667798 8999999999999999999999


Q ss_pred             CCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          301 DVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       301 ~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      +++++||+|++|+++|++|.+|+++..
T Consensus       216 ~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          216 RYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CCSEEEEECTTCBEEEEEECC------
T ss_pred             CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            999999999999999999999998754

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.56  E-value=3.3e-14  Score=133.67  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=104.1

Q ss_pred             ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103          178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  252 (413)
Q Consensus       178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~  252 (413)
                      +....++.+|.++++++.+++++.+|++.|.++     +++++||+|+   +|   +++|++|.+|++..          
T Consensus       132 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~----------  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA----------  195 (278)
T ss_dssp             SCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS----------
T ss_pred             CCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC----------
Confidence            556677889999999999999999999999987     7899999975   45   89999999999861          


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                         ...            ..++++|.++++++++++++.+|++.|.+++.+.+||||++|+++|+||..|++..+..
T Consensus       196 ---~~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          196 ---DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             ---CTT------------CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             ---CCC------------CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence               011            23556688889999999999999999999999999999999999999999999986653

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.56  E-value=1.8e-14  Score=123.42  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             CCCCCCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccc
Q 015103          182 GNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  259 (413)
Q Consensus       182 ~~~~~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~  259 (413)
                      .++++|.+  +++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+|+++++...          .. 
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~-  102 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQ-  102 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GG-
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------Cc-
Confidence            35568876  7899999999999999999999999999964  224   799999999998732110          11 


Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHH
Q 015103          260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  324 (413)
Q Consensus       260 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~  324 (413)
                                 ..++++|.+ +.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|++
T Consensus       103 -----------~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          103 -----------FHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             -----------CCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             -----------ccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence                       234555755 78999999999999999999999999999999999999999985

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.55  E-value=2.8e-15  Score=124.48  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=97.3

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHH-HHHhhccCCCCCccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~-~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      +|.++++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++ ++.....                
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~----------------   70 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD----------------   70 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC----------------
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC----------------
Confidence            56778899999999999999999999999999965   45   8999999999984 3321100                


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                         .....++++|.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|++|.+|+++.+
T Consensus        71 ---~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           71 ---PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             ---TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             ---ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence               0112456668889999999999999999999999999999997 9999999999998854

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.54  E-value=8.8e-15  Score=127.86  Aligned_cols=137  Identities=18%  Similarity=0.258  Sum_probs=100.2

Q ss_pred             CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCC--CCCcccccccc
Q 015103          186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS--SSSLPILQQPV  261 (413)
Q Consensus       186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~--~~~~~~~~~~i  261 (413)
                      +|.+  +++++.+++++.+|+++|.+++++.+||+|+   +|   +++|++|.+||++++.......  ....+......
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4666  7899999999999999999999999999975   45   8999999999986432110000  00000000000


Q ss_pred             c------ccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          262 S------SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       262 ~------~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .      .+........++++|.++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            0      000011123577789888999999999999999999999999999999999999999999999665

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.53  E-value=3.5e-14  Score=134.05  Aligned_cols=121  Identities=14%  Similarity=0.186  Sum_probs=104.9

Q ss_pred             ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103          178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  252 (413)
Q Consensus       178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~  252 (413)
                      +....++.+|.++++++.+++++.+|++.|.++     +++++||+|+   +|   +++|++|.+|+++.          
T Consensus       134 ~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~----------  197 (286)
T 2oux_A          134 YEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN----------  197 (286)
T ss_dssp             SCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS----------
T ss_pred             CChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcC----------
Confidence            556667789999999999999999999999987     8899999975   45   89999999998761          


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                         ...            ..++++|.++++++.+++++.+|+++|.+++++++||||++|+++|+||..|++..+..
T Consensus       198 ---~~~------------~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          198 ---DDD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             ---CTT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---CCC------------CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence               011            24556688899999999999999999999999999999999999999999999997653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.52  E-value=1.1e-13  Score=127.70  Aligned_cols=142  Identities=12%  Similarity=0.130  Sum_probs=104.3

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC---------
Q 015103          182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---------  252 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~---------  252 (413)
                      .++++|.++++++.+++++.+|+++|.+++++++||+++ .+.+   +++|+||.+||++++.........         
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~   89 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD   89 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence            356789999999999999999999999999999999964 2234   799999999999987644210000         


Q ss_pred             ------------------Cccccccc--------------------------------------------------ccc-
Q 015103          253 ------------------SLPILQQP--------------------------------------------------VSS-  263 (413)
Q Consensus       253 ------------------~~~~~~~~--------------------------------------------------i~~-  263 (413)
                                        ...+....                                                  ... 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (250)
T 2d4z_A           90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE  169 (250)
T ss_dssp             CC---------------------------------------------------------------------------CCS
T ss_pred             ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence                              00000000                                                  000 


Q ss_pred             -cc---cccc-----cccc--c-ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 -IQ---LGTW-----VPRI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 -l~---i~~~-----~~~v--~-~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                       +.   +..|     ...+  . .+|.+.++++.+++++.+|..+|...|++++||++ .|+++|+||+.||++++.
T Consensus       170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence             00   0001     0122  2 35888899999999999999999999999999997 799999999999999765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.52  E-value=4.1e-14  Score=144.79  Aligned_cols=123  Identities=19%  Similarity=0.235  Sum_probs=104.3

Q ss_pred             ccccccCCCCceEecCC-CCHHHHHHHHHhCCCCEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc
Q 015103          271 PRIGEANGRPFAMLRPT-ASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL  348 (413)
Q Consensus       271 ~~v~~~m~~~~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~  348 (413)
                      .+++++|.++++++.++ +++.+|+++|.+++++++||+| ++|+++|+||.+||++.+..+...    .+.++.+    
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~----~~~~V~~----  455 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ----QSDPAIK----  455 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC----TTSBGGG----
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc----CCCcHHH----
Confidence            47889999999999999 9999999999999999999999 789999999999999865432111    1234544    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCC---CCeEEEEEehHHHHHHhhc
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG---SKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~---~~~liGvIS~~DIl~~l~~  412 (413)
                               +|.++++++.+++++.+++++|.++++  +||||++   +|+++||||+.||++++..
T Consensus       456 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          456 ---------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ---------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ---------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                     777889999999999999999987775  7999931   3899999999999999864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.52  E-value=1.4e-13  Score=138.78  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=105.4

Q ss_pred             ccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCC
Q 015103          178 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS  252 (413)
Q Consensus       178 ~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~  252 (413)
                      +....++++|.++++++++++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..          
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~----------  215 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA----------  215 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS----------
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC----------
Confidence            667788999999999999999999999999986     5899999975   35   89999999999861          


Q ss_pred             CcccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          253 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       253 ~~~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                         ..+            ..++++|.++++++++++++.++++.|.+++...+||+|++|+++|++|.+|++....+
T Consensus       216 ---~~~------------~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          216 ---DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             ---CTT------------SBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ---CCC------------CcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence               011            23556688899999999999999999999999999999999999999999999986653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.51  E-value=2.1e-14  Score=123.21  Aligned_cols=121  Identities=9%  Similarity=0.104  Sum_probs=98.4

Q ss_pred             CCCC--CcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          186 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       186 ~~~~--~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+|+   +|   +++|++|.+|+++++......          ....
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~----------~~~~   82 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI----------EFEK   82 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB----------CGGG
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc----------chhh
Confidence            4655  7899999999999999999999999999975   45   899999999999866431100          0000


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                          .....++++|.+++.++.+++++.+|+++|.++++  +||+|++|+++|++|.+|++..+.
T Consensus        83 ----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           83 ----LDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ----TTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ----hccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence                01124667788899999999999999999998876  999998899999999999998665

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.51  E-value=1.2e-13  Score=118.19  Aligned_cols=116  Identities=13%  Similarity=0.237  Sum_probs=98.1

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|.+|+++++......      .            
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~------------   75 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------S------------   75 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------S------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------c------------
Confidence            6789999999999999999999999999963    35   899999999999866432211      0            


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhh
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  330 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~  330 (413)
                      ....++++|.+++.++.+++++.+|+++|.+++++.+||+| +|+++|++|..|++..+...
T Consensus        76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            11245666888999999999999999999999999999999 79999999999999976643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.51  E-value=4.9e-14  Score=121.16  Aligned_cols=123  Identities=12%  Similarity=0.124  Sum_probs=96.9

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++.+++++.+|++.|.+++++++||+|+ .++|   +++|++|.+|+++++.......   .....       
T Consensus        18 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~-------   83 (164)
T 2pfi_A           18 FMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQ-------   83 (164)
T ss_dssp             HCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCC-------
T ss_pred             HcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCccc-------
Confidence            57788999999999999999999999999999963 1245   8999999999998764321110   00011       


Q ss_pred             cccccccccccCCCC------ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGRP------FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~~------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ..+.++|..+      +.++.+++++.+|+++|.+++.+++||+| +|+++|++|.+|++..+.
T Consensus        84 -----~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           84 -----QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             -----CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             -----chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                 1233445444      78899999999999999999999999999 799999999999998665

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.50  E-value=5.3e-14  Score=123.47  Aligned_cols=138  Identities=9%  Similarity=0.110  Sum_probs=101.7

Q ss_pred             CCCCC----cEEe--CCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC----cc
Q 015103          186 PCPRP----LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LP  255 (413)
Q Consensus       186 ~~~~~----~v~v--~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~----~~  255 (413)
                      +|.+.    ++++  .+++++.+|+++|.+++++.+||+++ .++|   +++|++|.+|+++++..........    ..
T Consensus        16 im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           16 VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            45554    7788  99999999999999999999999931 1255   8999999999999876532110000    00


Q ss_pred             cccccccccc-cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          256 ILQQPVSSIQ-LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       256 ~~~~~i~~l~-i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .+........ .......++++|.+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||..|+++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            0000000000 00112357788988999999999999999999999999999999 899999999999999665

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.49  E-value=8.1e-14  Score=140.46  Aligned_cols=116  Identities=18%  Similarity=0.273  Sum_probs=102.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhC-----CCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      +++++|.++++++++++++.+|++.|.++     +++++||+|++++++|++|.+|++...          .+.++++  
T Consensus       156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~d--  223 (473)
T 2zy9_A          156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAE--  223 (473)
T ss_dssp             BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGG--
T ss_pred             CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHH--
Confidence            56777999999999999999999999986     579999999889999999999997621          1245554  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                 +|.++++++++++++.+|++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus       224 -----------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          224 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             -----------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                       7777899999999999999999999999999999 5899999999999998864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.44  E-value=3.7e-14  Score=148.02  Aligned_cols=139  Identities=16%  Similarity=0.074  Sum_probs=103.2

Q ss_pred             ccccccCC--CCceEecCCCCHHHHHHHHH-hCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhcc---------c
Q 015103          271 PRIGEANG--RPFAMLRPTASLGSALALLV-QADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIH---------L  337 (413)
Q Consensus       271 ~~v~~~m~--~~~~~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~~---------l  337 (413)
                      .+++++|+  +++.++++++++.++.+.|. +++++.+||+|++++++|++|++|+.+....... ....         .
T Consensus       453 ~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          453 MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             SBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC-----------------
T ss_pred             CcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            46889999  89999999999999999999 7999999999989999999999999886543210 0000         0


Q ss_pred             Cccc----HHHHHhcC---------------CCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeE
Q 015103          338 DEMN----IHQALQLG---------------QDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV  397 (413)
Q Consensus       338 ~~~~----v~~~l~~~---------------~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~l  397 (413)
                      ....    ++......               ..+..+++ +|++++.++++++++.++++.|.+++++++||+|  +|++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~l  610 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKL  610 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEE
Confidence            0000    00100000               00111233 8999999999999999999999999999999996  6999


Q ss_pred             EEEEehHHHHHHhh
Q 015103          398 EGIISLSDVFRFLL  411 (413)
Q Consensus       398 iGvIS~~DIl~~l~  411 (413)
                      +|+||++||++++.
T Consensus       611 vGIVT~~Dll~~~~  624 (632)
T 3org_A          611 VGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEEEGGGTEECCC
T ss_pred             EEEEehhhHHHHHh
Confidence            99999999987654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.43  E-value=7.5e-13  Score=134.26  Aligned_cols=114  Identities=16%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             ccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103          275 EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  352 (413)
Q Consensus       275 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~  352 (413)
                      +.|..+++++.+++++.+++++|.+++++++||+|+  +++++|++|.+|+...   .   .   .+.++.+        
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~---~---~---~~~~V~~--------  179 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI---Q---D---YSIKISD--------  179 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC---C---C---SSSBHHH--------
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh---c---c---CCCcHHH--------
Confidence            447778899999999999999999999999999998  8999999999999641   1   0   1356766        


Q ss_pred             CCCcccCCC-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          353 NPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       353 ~~~~~~m~~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                           +|.+ +++++++++++.++++.|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus       180 -----vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          180 -----VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             -----HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhhh
Confidence                 6666 889999999999999999999999999999 6899999999999999863

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.36  E-value=1.2e-11  Score=125.43  Aligned_cols=115  Identities=13%  Similarity=0.196  Sum_probs=98.2

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      .|..+++++.+++|+.+|+++|.+++++++||+++. .++   +++|++|.+|++.      .      ....       
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~-------  174 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYS-------  174 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSS-------
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCC-------
Confidence            577889999999999999999999999999999631 134   8999999999853      0      1111       


Q ss_pred             cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ..++++|++ +++++++++++.+++++|.+++++.+||||++|+++|++|..|+++...
T Consensus       175 -----~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          175 -----IKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             -----SBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----CcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhh
Confidence                 235566887 8999999999999999999999999999999999999999999999765

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.36  E-value=4.2e-12  Score=128.85  Aligned_cols=115  Identities=19%  Similarity=0.288  Sum_probs=100.6

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++|.+++.++.+++++.++++.|.+++++.+||+|  ++++++|++|.+|++...      .   .+.++.+       
T Consensus        93 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~------~---~~~~v~~-------  156 (491)
T 1zfj_A           93 ENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS------D---YNAPISE-------  156 (491)
T ss_dssp             TTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS------C---SSSBTTT-------
T ss_pred             HhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc------c---CCCcHHH-------
Confidence            455888899999999999999999999999999999  789999999999997531      0   1234433       


Q ss_pred             CCCCcccCCC-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQ-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|.+ +++++++++++.++++.|.+++++++|||| ++|+++|+||+.||++.+.
T Consensus       157 ------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          157 ------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                  7777 889999999999999999999999999999 6899999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.34  E-value=1.9e-12  Score=132.48  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             CCCCCCCCCcEEeCCC-CCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccc
Q 015103          182 GNGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  260 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~-~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~  260 (413)
                      .++++|.++++++.++ +++.+|+++|.+++++++||+|.  +++   +++|+||.+||++.+......       ..  
T Consensus       385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~~-------~~--  450 (527)
T 3pc3_A          385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNRQ-------QS--  450 (527)
T ss_dssp             BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCCC-------TT--
T ss_pred             cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccCc-------CC--
Confidence            3567899999999999 99999999999999999999961  145   899999999999977643111       11  


Q ss_pred             ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC----CcEEEEEeHHHHHHHHhh
Q 015103          261 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKD  329 (413)
Q Consensus       261 i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiit~~dl~~~~~~  329 (413)
                                ..++++|.++++++.+++++.+++++|.++++  +||||++    |+++|+||+.||++.+.+
T Consensus       451 ----------~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          451 ----------DPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             ----------SBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             ----------CcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence                      24556688999999999999999999977664  7999974    899999999999997764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.34  E-value=4.9e-13  Score=135.16  Aligned_cols=114  Identities=15%  Similarity=0.270  Sum_probs=85.6

Q ss_pred             cccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103          274 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       274 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~  353 (413)
                      ++.|..+++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+....      .   .+.++.+         
T Consensus        92 ~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~------~---~~~~v~d---------  153 (496)
T 4fxs_A           92 EAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVT------D---LTKSVAA---------  153 (496)
T ss_dssp             CC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCC------C---TTSBGGG---------
T ss_pred             ccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcc------c---CCCcHHH---------
Confidence            345778899999999999999999999999999999899999999999986210      0   1234444         


Q ss_pred             CCcccCC-C-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          354 PSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       354 ~~~~~m~-~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                          +|. + +++++++++++.++++.|.+++++.+|||| ++|+++|+||+.||++..
T Consensus       154 ----iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          154 ----VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             ----TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             ----HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence                666 3 589999999999999999999999999999 699999999999999864

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.30  E-value=2.1e-13  Score=138.35  Aligned_cols=113  Identities=14%  Similarity=0.167  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~  353 (413)
                      |.++++++.+++++.+++++|.+++++++||+|++   ++++|+||.+|++.. . .   .   .+.++.+         
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~-~---~---~~~~V~d---------  165 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-L-T---Q---TETKVSD---------  165 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-h-c---c---ccCcHHH---------
Confidence            67788999999999999999999999999999976   899999999999863 1 0   0   1234444         


Q ss_pred             CCcccCCCc--ceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          354 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       354 ~~~~~m~~~--~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                          +|.++  ++++++++++.+|+++|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus       166 ----iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          166 ----MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                66666  89999999999999999999999999999 5899999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.28  E-value=3.2e-13  Score=137.12  Aligned_cols=116  Identities=16%  Similarity=0.285  Sum_probs=5.2

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103          273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  352 (413)
Q Consensus       273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~  352 (413)
                      ++++|.++++++.+++++.+|+++|.+++++.+||+|++++++|+||.+|+.....         .+.++.+        
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~--------  159 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKD--------  159 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHH--------
Confidence            34558888999999999999999999999999999998899999999999986210         0234444        


Q ss_pred             CCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          353 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       353 ~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                           +|.+  +++++.+++++.++++.|.+++++.+|||| ++|+++|+||+.||++.+.
T Consensus       160 -----im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          160 -----LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------------------------------------CHHHHT
T ss_pred             -----HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                 6666  889999999999999999999999999999 5899999999999999864

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.26  E-value=5e-13  Score=134.99  Aligned_cols=114  Identities=14%  Similarity=0.264  Sum_probs=1.3

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCC
Q 015103          273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA  352 (413)
Q Consensus       273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~  352 (413)
                      +++.|..+++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+.....         .+.++.+        
T Consensus        90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~--------  151 (490)
T 4avf_A           90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAA--------  151 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHH--------
Confidence            3455777889999999999999999999999999999 899999999999863211         0234554        


Q ss_pred             CCCcccCC-C-cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          353 NPSLGFNG-Q-RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       353 ~~~~~~m~-~-~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                           +|. + +++++++++++.+++++|.+++++.+|||| ++|+++|+||+.||++.+
T Consensus       152 -----vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          152 -----IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ------------------------------------------------------------
T ss_pred             -----HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                 666 3 689999999999999999999999999999 689999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.25  E-value=7.5e-13  Score=134.33  Aligned_cols=165  Identities=14%  Similarity=0.126  Sum_probs=21.6

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103          187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  266 (413)
Q Consensus       187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i  266 (413)
                      |.++++++.+++|+.+|+++|.+++++++||+|++...+   +++|++|.+|++..  .         ....        
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~--------  160 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTE--------  160 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------cccc--------
Confidence            778999999999999999999999999999996511115   89999999999752  0         0011        


Q ss_pred             ccccccccccCCCC--ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHH
Q 015103          267 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ  344 (413)
Q Consensus       267 ~~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~  344 (413)
                          ..++++|.++  ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.........    + ... 
T Consensus       161 ----~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~~~----d-~~~-  230 (503)
T 1me8_A          161 ----TKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELV----D-SQK-  230 (503)
T ss_dssp             -----------------------------------------------------------------CCCCB----C-TTS-
T ss_pred             ----CcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccchh----c-ccc-
Confidence                2455668877  999999999999999999999999999999999999999999998654221100    0 000 


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEE
Q 015103          345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEG  399 (413)
Q Consensus       345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liG  399 (413)
                                .  ++.  ...+.. ....+.++.|.+.+++.+ ++|..+|...|
T Consensus       231 ----------~--l~v--~a~v~~-~~~~e~~~~l~e~gv~~l-~Vd~~~g~~~~  269 (503)
T 1me8_A          231 ----------R--YLV--GAGINT-RDFRERVPALVEAGADVL-CIDSSDGFSEW  269 (503)
T ss_dssp             ----------C--BCC--EEEECS-SSHHHHHHHHHHHTCSEE-EECCSCCCSHH
T ss_pred             ----------c--ccc--ccccCc-hhHHHHHHHHHhhhccce-EEecccCcccc
Confidence                      0  111  123344 666677888888899865 44322344333

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.24  E-value=1.7e-12  Score=128.69  Aligned_cols=162  Identities=19%  Similarity=0.168  Sum_probs=21.6

Q ss_pred             eeeceeCCCCeEEEEeehHHHHHHHHHhccC---CCCCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCC
Q 015103          120 MVPLWDDFKGRFVGVLSALDFILILRELGTN---GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP  196 (413)
Q Consensus       120 s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~---~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~  196 (413)
                      .+|++.+.=.    -+|..++.-.+.+.+.-   ..+++.++-.    ...+..++..+          .|..+++++.|
T Consensus        92 ~iPlvSA~MD----TVTe~~MAIamAr~GGiGvIH~n~sie~Qa----~~V~~VKr~e~----------g~i~dPvtl~P  153 (556)
T 4af0_A           92 NTPFLSSPMD----TVTEDRMAIALALHGGLGIIHHNCSAEEQA----AMVRRVKKYEN----------GFITDPLCLGP  153 (556)
T ss_dssp             SSCEEECCCT----TTCSHHHHHHHHHTTCEEEECCSSCHHHHH----HHHHHHHHCCC---------------------
T ss_pred             CCCEEecCcc----cccCHHHHHHHHHCCCeEEEcCCCCHHHHH----HHHHHHHhccc----------CccCCCeEcCC
Confidence            3688765422    24556666666655421   1455544421    22233333222          35677899999


Q ss_pred             CCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccccccccccc
Q 015103          197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA  276 (413)
Q Consensus       197 ~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~~~~~v~~~  276 (413)
                      +.|+.||+++|.+++++.+||+++...++   +++||+|.+|+.- -            ....            .++++
T Consensus       154 ~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~rf-~------------d~~~------------~V~ev  205 (556)
T 4af0_A          154 DATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQF-Q------------DAET------------PIKSV  205 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEecccccc-c------------ccce------------Ehhhh
Confidence            99999999999999999999997533345   8999999999732 0            1122            35566


Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      |+++++++....++.+|.++|.++++..+||||++|+++|+||+.|+.+..
T Consensus       206 MT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          206 MTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ---------------------------------------------------
T ss_pred             cccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence            999999999999999999999999999999999999999999999998744

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.23  E-value=2.8e-12  Score=133.82  Aligned_cols=137  Identities=12%  Similarity=0.049  Sum_probs=99.6

Q ss_pred             CCCCCC--CCcEEeCCCCCHHHHHHHHH-hCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCC------
Q 015103          183 NGRPCP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS------  253 (413)
Q Consensus       183 ~~~~~~--~~~v~v~~~~sl~ea~~~m~-~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~------  253 (413)
                      ++++|.  ++++++++++++.|+.+.|. +++++++||+|+   ++   +++|++|.+|+++.+..........      
T Consensus       455 V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          455 AREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             HHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC-------------
T ss_pred             HHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            456788  89999999999999999999 799999999975   45   8999999999998664331110000      


Q ss_pred             -----cccccccccccc-----------------cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCC
Q 015103          254 -----LPILQQPVSSIQ-----------------LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  311 (413)
Q Consensus       254 -----~~~~~~~i~~l~-----------------i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~  311 (413)
                           ...+.+.+..+.                 +-....+++++|+++++++++++++.+|+++|.+++++.+||+ ++
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                 000000011100                 0011124788999999999999999999999999999999999 68


Q ss_pred             CcEEEEEeHHHHHHH
Q 015103          312 DSLLDIYSRSDITAL  326 (413)
Q Consensus       312 g~lvGiit~~dl~~~  326 (413)
                      |+++|+||++|+++.
T Consensus       608 G~lvGIVT~~Dll~~  622 (632)
T 3org_A          608 GKLVGIVEREDVAYG  622 (632)
T ss_dssp             TEEEEEEEGGGTEEC
T ss_pred             CEEEEEEehhhHHHH
Confidence            999999999999764

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.22  E-value=1.1e-10  Score=118.50  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|..+++++.+++++.+|+++|.+++++++||++. .+++   +++|++|.+|++..            ....       
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~------------~~~~-------  151 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI------------SDYN-------  151 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC------------SCSS-------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh------------ccCC-------
Confidence            68889999999999999999999999999999961 0145   89999999999862            0011       


Q ss_pred             cccccccccccCCC-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ..++++|.+ +++++.+++++.+++++|.+++++.+||+|++|+++|++|..|+++...
T Consensus       152 -----~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          152 -----APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             -----SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                 245566887 8899999999999999999999999999999999999999999999765

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.21  E-value=1.2e-12  Score=129.68  Aligned_cols=109  Identities=20%  Similarity=0.252  Sum_probs=0.0

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~  353 (413)
                      |..+++++.|+.++.+|+++|.+++++.+||+++   +++|+|++|.+|+...   ..       +.++++         
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d~-------~~~V~e---------  204 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---DA-------ETPIKS---------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---cc-------ceEhhh---------
Confidence            4557889999999999999999999999999986   6799999999998541   11       234555         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 015103          354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF  409 (413)
Q Consensus       354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~  409 (413)
                          +|++++++++.+.++.+|.++|.++++..||||| ++++++|+||+.|+++.
T Consensus       205 ----vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----hcccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                7888899999999999999999999999999999 69999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.19  E-value=1.2e-11  Score=124.94  Aligned_cols=114  Identities=15%  Similarity=0.158  Sum_probs=84.4

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ..|..+++++++++++.+|+++|.+++++++||+|+   ++   +++|+||.+|++.      .      ....      
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~------  148 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLT------  148 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTT------
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCC------
Confidence            367889999999999999999999999999999975   45   8999999999852      0      1111      


Q ss_pred             ccccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          265 QLGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       265 ~i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ..+.++|+ + +++++++++++.+++++|.++++..+||||++|+++|+||..|+++...
T Consensus       149 ------~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          149 ------KSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             ------SBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             ------CcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                  23455587 3 5889999999999999999999999999999999999999999998543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.14  E-value=1.2e-11  Score=125.51  Aligned_cols=114  Identities=18%  Similarity=0.290  Sum_probs=4.6

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|.++++++.+++++.+|+++|.+++++.+||+|+   ++   +++|++|.+|+++.  .          ...      
T Consensus        99 ~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~--~----------~~~------  154 (494)
T 1vrd_A           99 NGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE--K----------NLS------  154 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh--c----------CCC------
Confidence            368889999999999999999999999999999975   45   89999999999751  0          011      


Q ss_pred             ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          265 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ..+.++|.+  +++++.+++++.+++++|.++++..+||||++|+++|++|..|+++...
T Consensus       155 ------~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          155 ------KKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ------------------------------------------------------------CHHHHT
T ss_pred             ------CcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhc
Confidence                  245566887  8999999999999999999999999999999999999999999998664

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.13  E-value=2.2e-11  Score=122.93  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=0.4

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ..|..+++++++++++.+|+++|.+++++++||+|    ++   +++|++|.+|+...            ....      
T Consensus        92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~------------~~~~------  146 (490)
T 4avf_A           92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK------------PNAG------  146 (490)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc------------cccC------
Confidence            36778899999999999999999999999999996    24   89999999998531            0111      


Q ss_pred             ccccccccccccCC-C-CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          265 QLGTWVPRIGEANG-R-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       265 ~i~~~~~~v~~~m~-~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ..++++|+ + +++++.+++++.+|+++|.++++..+||||++|+++|+||..|+++...
T Consensus       147 ------~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          147 ------DTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ------CcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                  23455687 4 6899999999999999999999999999999999999999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.10  E-value=9.1e-13  Score=134.38  Aligned_cols=117  Identities=20%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|++|.+|+......       ..+.++.+     
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~-----  177 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSE-----  177 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHH-----
Confidence            44568788899999999999999999999999999997   5899999999998763210       01234444     


Q ss_pred             CCCCCCcccCCC--cceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          350 QDANPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       350 ~~~~~~~~~m~~--~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                              +|.+  +++++.+++++.++++.|.+++.+.+|||| ++|+++|+||++||++++
T Consensus       178 --------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          178 --------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             --------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                    6666  789999999999999999999999999999 589999999999998765

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.07  E-value=1.3e-11  Score=124.86  Aligned_cols=109  Identities=17%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             cCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCC
Q 015103          276 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS  355 (413)
Q Consensus       276 ~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~  355 (413)
                      .|..++.++.+++++.+++++|.+++++.+||+|+ ++++|+++.+|++.  .      .   +.++.+           
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~------~---~~~v~~-----------  154 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R------E---GKLVKE-----------  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C------C---CCCHHH-----------
Confidence            46678899999999999999999999999999997 99999999999875  1      0   234544           


Q ss_pred             cccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          356 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       356 ~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                        +|.++++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       155 --im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          155 --LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             --HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence              5666788999999999999999999999999999 589999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.92  E-value=6.4e-11  Score=120.72  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=67.5

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|++|.+|+.....          ...       
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~-------  171 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDH-------  171 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC------------------------
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccC-------
Confidence            46888899999999999999999999999999996411125   8999999999865210          001       


Q ss_pred             ccccccccccccCCC--CceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          265 QLGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                           ...+.++|.+  +++++.+++++.+++++|.++++..+||||++|+++|++|++|+++..
T Consensus       172 -----~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          172 -----TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             -----CCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                 1245566887  899999999999999999999999999999999999999999988744

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.92  E-value=1.6e-10  Score=116.97  Aligned_cols=161  Identities=16%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      .|..+++++.+++++.+++++|.+++++++||+++    +   +++|+++.+|++.   .           ..       
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~-------  149 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EG-------  149 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CC-------
Confidence            57788999999999999999999999999999963    4   7999999999864   0           01       


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA  345 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~  345 (413)
                           ..+.++|.++++++.+++++.+++++|.+++++.+||+|++|+++|++|.+|+++......   .      ..+ 
T Consensus       150 -----~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~---~------~~~-  214 (486)
T 2cu0_A          150 -----KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKN---A------VRD-  214 (486)
T ss_dssp             --------------------------------------------------------------CCTT---C------CBC-
T ss_pred             -----CCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhccc---c------ccc-
Confidence                 1345558888899999999999999999999999999999999999999999998653210   0      000 


Q ss_pred             HhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 015103          346 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS  402 (413)
Q Consensus       346 l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS  402 (413)
                            ....  ++-  -..+...+  .+.+..|...+++.+ |++...|...++++
T Consensus       215 ------~~g~--~~v--~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          215 ------ENGE--LLV--AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             ------TTSC--BCC--EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             ------cCCc--eee--cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence                  0000  110  01223333  566778889999875 66633455444443

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=98.88  E-value=1.1e-09  Score=85.29  Aligned_cols=36  Identities=42%  Similarity=0.879  Sum_probs=33.5

Q ss_pred             CceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCCC
Q 015103            1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPD   37 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~~   37 (413)
                      .|||+|||+|++||..|++.|+.|+.||+|.| .++|
T Consensus        57 ~YKf~VdG~~~~DP~~~~~~d~~G~~Nnvi~V-~~~d   92 (96)
T 1z0n_A           57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV-KKTD   92 (96)
T ss_dssp             EEEEEETTEEECCTTSCEEECTTSCEEEEEEE-CSCT
T ss_pred             EEEEEECCeEEcCCCCCeEECCCCCEeEEEEE-cCCC
Confidence            49999999999999999999999999999999 6554

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.86  E-value=3.8e-09  Score=77.25  Aligned_cols=46  Identities=15%  Similarity=0.341  Sum_probs=42.5

Q ss_pred             ceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          281 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       281 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            57899999999999999999999999998 68999999999998744

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.83  E-value=7.2e-09  Score=75.73  Aligned_cols=46  Identities=26%  Similarity=0.386  Sum_probs=42.1

Q ss_pred             cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHH
Q 015103          191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  243 (413)
Q Consensus       191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l  243 (413)
                      ++++.|++|+.+|+++|.+++++++||+++    |   +++||+|.+||++.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHHH
Confidence            689999999999999999999999999964    4   899999999998754

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=98.70  E-value=7.2e-09  Score=94.71  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.6

Q ss_pred             CceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCCC
Q 015103            1 MYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPD   37 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~~   37 (413)
                      .|||+|||+|++||+.|++.|+.|++||++.| ..+|
T Consensus        54 ~YKFiVDG~w~~Dp~~p~~~d~~G~~nNvi~V-~~~~   89 (252)
T 2qlv_B           54 RFRFIVDNELRVSDFLPTATDQMGNFVNYIEV-RQPE   89 (252)
T ss_dssp             EEEEEETTEEECCTTSCEEBCSSCCCEEEEEE-CC--
T ss_pred             EEEEEECCEEEeCCCCCEEecCCCcCcceeec-cCcc
Confidence            49999999999999999999999999999999 7554

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=98.62  E-value=2.2e-08  Score=94.31  Aligned_cols=33  Identities=33%  Similarity=0.682  Sum_probs=31.0

Q ss_pred             CceEEEcCeeeeCCCCCcc-cCCCCCcceEEEecc
Q 015103            1 MYKFYVDGEWRHDENQPHV-SGNYGVVNCVYIAVP   34 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~-~~~~g~~~~~~~~~~   34 (413)
                      .|||+|||+|++||+.|.. .|+.|++||++.| .
T Consensus       220 ~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v-~  253 (294)
T 3nme_A          220 EYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKV-V  253 (294)
T ss_dssp             EEEEEETTEEECCTTSCEECSCTTSCCEEEEEE-C
T ss_pred             EEEEEECCEEeeCCCCCeeeECCCCCEeEEEEE-C
Confidence            4999999999999999986 8999999999999 5

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=94.22  E-value=0.017  Score=60.67  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=25.9

Q ss_pred             CceEEEcCeee--eCCCCCcc---cCCCCCcceEE
Q 015103            1 MYKFYVDGEWR--HDENQPHV---SGNYGVVNCVY   30 (413)
Q Consensus         1 ~ykf~vdg~w~--~~~~~~~~---~~~~g~~~~~~   30 (413)
                      .|||+|||+|+  +||+.|..   .|.+|..|++.
T Consensus        68 ~y~f~vdg~~~~~~d~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           68 GYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             EEEEEETTCCSCCCCTTCCCEEEEECSSCTTSEEE
T ss_pred             EEEEEECCEEeecCCCCCCcccccccCCcccccee
Confidence            39999999999  88988764   58999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-05
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	5e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-09
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	5e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	9e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.002
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.001
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	2e-07
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	2e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	6e-06
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	3e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	4e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	7e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.004
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.002

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 70.4 bits (171), Expect = 5e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 77  RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 136
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 137 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 196
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 197 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 251
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 283 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSD-ITALAKDKAYAQIHLDEM 340
           +   T  + ++L+LL   ++ S P+   + +    + + +D +  +      +       
Sbjct: 34  VFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA 93

Query: 341 NIHQALQLG-QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE----AGSK 395
            I +   LG ++    +G              L      ++    RR+ +++     GS+
Sbjct: 94  EIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSE 153

Query: 396 RVEGIISLSDVFRFL 410
            +  +++   + +F+
Sbjct: 154 MIVSVLTQYRILKFI 168

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.1 bits (155), Expect = 5e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 78  ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 137
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 138 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 197
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 198 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 243
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 283 MLRPTASLGSALALLVQADVSSIPIV-DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMN 341
           +   +  +  A   LV   V + P+      S + + + +D   +     Y +  L ++ 
Sbjct: 27  VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYKSALVQIY 84

Query: 342 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGII 401
             +  ++       L  + +       +  L   +  L    + RL +++  S     I+
Sbjct: 85  ELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL 144

Query: 402 SLSDVFRFL 410
           +   + +FL
Sbjct: 145 THKRILKFL 153

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 53.4 bits (127), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 20/153 (13%)

Query: 260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 319
           P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++Y 
Sbjct: 2   PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 52

Query: 320 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERL 379
             D+  L +D  Y+ + L                     N      C  +D L  + + +
Sbjct: 53  SVDVMHLIQDGDYSNLDLSVGEALLKRP----------ANFDGVHTCRATDRLDGIFDAI 102

Query: 380 ANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
            +  V RL +V+    ++EGI+SL+D+  +++ 
Sbjct: 103 KHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 20/156 (12%)

Query: 256 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 315
            L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L+
Sbjct: 3   FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 53

Query: 316 DIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKV 375
           ++Y   D+  L K   Y  + L                     + +    C ++D L  +
Sbjct: 54  NVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----------DDFEGVYTCTKNDKLSTI 103

Query: 376 MERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           M+ +    V R  +V+    R+ G+++LSD+ +++L
Sbjct: 104 MDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYIL 138

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
           R    L  T +L  A  L+   D+  +PIVD N  LL I S+ D+ A  +         D
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGD 69

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
            +     L                         L +    +    +  L +V      + 
Sbjct: 70  SLAFETPLFE---------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLV 118

Query: 399 GIISLSDVFRFLL 411
           GII+ SD     +
Sbjct: 119 GIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 309 DDNDSLLDIYSRSDI 323
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 9e-09
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 20/155 (12%)

Query: 257 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLD 316
           + + +  +Q+GT+            AM+R T  +  AL + VQ  VS++P+VD+   ++D
Sbjct: 7   MSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVD 57

Query: 317 IYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVM 376
           IYS+ D+  LA +K Y  + +      Q      +              C   + L  ++
Sbjct: 58  IYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK----------CYLHETLEAII 107

Query: 377 ERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
            RL    V RLV+V+     V+GI+SLSD+ + L+
Sbjct: 108 NRLVEAEVHRLVVVDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 309 DDNDSLLDIYSRSDI 323
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 19/133 (14%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI               
Sbjct: 13  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPV 72

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
           E  + +                        + PL +V+ ++A   ++ ++I E G  ++ 
Sbjct: 73  ERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KIV 113

Query: 399 GIISLSDVFRFLL 411
           GI +LSD+     
Sbjct: 114 GIFTLSDLLEASR 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329
           V  + +  G     + P  S+ +A+  +   ++ ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTER--------- 54

Query: 330 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 389
                   D       L              ++      ++     M  +    VR L +
Sbjct: 55  --------DFSRKSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 390 VEAGSKRVEGIISLSDVFRFLL 411
           ++ G  +V G++S+ D+ +  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 244
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 245 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 304
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 305 IPIVDDNDSLLDIYSRSDI 323
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND------------SLLDIYS 319
            I     R  +++     L +AL  L+ ++  ++P+VD                  +I  
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 320 RSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHK-VMER 378
               T LA       I      +       Q  N  +     R  +          V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 379 LANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 411
           +A   + +L ++  G   + G+I   D+ + L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 243
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 244 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 303
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 304 SIPIVDDNDSLLDIYSRSDI 323
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 2  YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 38
          YKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 49 YKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
                +    +L +A   + + D+ ++PI  D+D L  + +  DI               
Sbjct: 9   AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 68

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
              + +                        +  + +++  +    VRR+ ++     R+ 
Sbjct: 69  AGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RLV 110

Query: 399 GIISLSDVFRFL 410
           GI++ +D+ R L
Sbjct: 111 GIVTEADIARHL 122

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 283 MLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 340
           + + + ++     ++ +   S  P+V   ++  L+    R D+    ++    Q  +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLANPGVRRLVIVEAG 393
           +I    +      P      +   +            P+  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 394 SKRVEGIISLSDVFRFL 410
             R+ GII+  DV + +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 331
           R+ +        +  TASL   L   V+    S   V      + I              
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIV------------- 46

Query: 332 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391
                  ++    A               +          + +  E++    V RL++ E
Sbjct: 47  ----TTWDVLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 392 AGSKRVEGIISLSDVFR 408
                + G+IS +D+ R
Sbjct: 103 DD--EIIGVISATDILR 117

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 1  MYKFYVDGEWRHDENQPHVSGNYGVVNCV 29
           ++F VD E R  +  P  +   G     
Sbjct: 54 RFRFIVDNELRVSDFLPTATDQMGNFVNY 82

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAK 328
           ++G+   R    +  T++ G  L +L Q  +   P VD    N  L  I        L +
Sbjct: 12  QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQR 71

Query: 329 DKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLR-------SDPLHKVMERLAN 381
             +  +    E  +        +                +          L K     + 
Sbjct: 72  RISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSL 131

Query: 382 PGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 412
            G+ R  +   G  ++ G+++L+++   + G
Sbjct: 132 LGLDRAYVTSMG--KLVGVVALAEIQAAIEG 160

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (96), Expect = 4e-05
 Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 17/141 (12%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 331
           R+ +     F  +    ++  A+ ++ +  +  + + DDN + + + S   I        
Sbjct: 4   RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------- 55

Query: 332 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391
                   +          D  P      +          +  V   L+  G+ R  +V+
Sbjct: 56  --------IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD 107

Query: 392 AGSKRVEGIISLSDVFRFLLG 412
               RV GI++L+D+ R+L  
Sbjct: 108 -DPGRVVGIVTLTDLSRYLSR 127

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 338
                +   A L     ++ + ++ S+ +VD N  +  I  R  + A+ K K+      +
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEE 71

Query: 339 EMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVE 398
            M                              P+   +  +    +R L +V+     ++
Sbjct: 72  FMTAS-------------------LITIREDSPITGALALMRQFNIRHLPVVD-DKGNLK 111

Query: 399 GIISLSDVFRFL 410
           GIIS+ D+ R +
Sbjct: 112 GIISIRDITRAI 123

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 11/142 (7%), Positives = 49/142 (34%), Gaps = 4/142 (2%)

Query: 270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 329
           V  + +       ++     +   +  +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 330 KAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVI 389
             +  I  +E+       + +    +               PL + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 390 VEAGSKRVEGIISLSDVFRFLL 411
           V+     + G ++  ++   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 248
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 249 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 308
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 309 DDNDSLLDIYSRSDI-TALAKDK 330
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 24/141 (17%)

Query: 272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA 331
           ++ +   + F M+  +A++   L  + Q   +   + D       + +        +D  
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVN-------KEDLL 54

Query: 332 YAQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 391
              +     N                            D +   +          L +V+
Sbjct: 55  DLDLDSSVFNKVS----------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVD 98

Query: 392 AGSKRVEGIISLSDVFRFLLG 412
               R++G +SL D    L+ 
Sbjct: 99  EE-MRLKGAVSLHDFLEALIE 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 192 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 251
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 252 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 311
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 312 DSLLDIYSRSDI 323
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 284 LRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEM 340
           L P   +        +     IPI D       L+ I S  DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 341 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGI 400
                               +   +      L +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 401 ISLSDVFR 408
           I+ +D+ +
Sbjct: 110 IARTDLKK 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.94
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.9
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.84
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.83
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.82
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.82
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.81
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.81
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.81
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.8
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.79
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.79
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.78
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.78
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.77
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.77
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.75
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.74
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.72
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.72
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.72
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.71
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.71
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.7
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.69
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.69
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.69
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.68
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.67
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.67
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.67
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.67
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.66
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.64
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.63
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.62
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.61
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.56
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.1
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.1
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	84.89

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.94  E-value=4.8e-26  Score=198.62  Aligned_cols=169  Identities=23%  Similarity=0.414  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhcc
Q 015103           70 DLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  149 (413)
Q Consensus        70 ~~~~~~~~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~  149 (413)
                      ..+.+.+.+++||++++|||+||.|+++++++.+.||.+|++.|.++++.++||||+++++++|++|..|++.++.....
T Consensus         5 ~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~   84 (179)
T d2ooxe1           5 TQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ   84 (179)
T ss_dssp             HHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccc
Confidence            34567899999999999999999999999999999999999999999999999999988899999999999998876543


Q ss_pred             CCC-CCCHHHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCcc
Q 015103          150 NGS-NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  228 (413)
Q Consensus       150 ~~~-~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~  228 (413)
                      ... .....+........+.......          ..|..+++++.+++++.+|+.+|.+++++++||+|++.+.+ ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~  153 (179)
T d2ooxe1          85 SSSFPEAIAEIDKFRLLGLREVERKI----------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SE  153 (179)
T ss_dssp             HCSCGGGGGGGGGSBHHHHHHHHHHT----------TCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CE
T ss_pred             cccchhhhhhhhccchhhhcccceee----------eecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CC
Confidence            321 1122233333444444433332          26889999999999999999999999999999998643222 23


Q ss_pred             ceEEEeehhhHHHHHHhhccC
Q 015103          229 EILYLASLSDILKCICRHFKH  249 (413)
Q Consensus       229 ~l~Givt~~dIl~~l~~~~~~  249 (413)
                      +++|++|++||++|++.++++
T Consensus       154 ~vvgiiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         154 MIVSVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEEEEEHHHHHHHHHTTCGG
T ss_pred             cEEEEEeHHHHHHHHHHhhhH
Confidence            799999999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.9e-23  Score=178.36  Aligned_cols=153  Identities=33%  Similarity=0.581  Sum_probs=124.4

Q ss_pred             HHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCH
Q 015103           77 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  156 (413)
Q Consensus        77 ~~~~fl~~~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~  156 (413)
                      -|.+||+++|+||+||.+.++|+++.+.|+.+|++.|.++++.++||+|.+.++++|++|..|++.++........ ...
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~-~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc-chh
Confidence            4789999999999999999999999999999999999999999999999888899999999999998765432110 011


Q ss_pred             HHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeeh
Q 015103          157 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  236 (413)
Q Consensus       157 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~  236 (413)
                      ..........+....            ...|..+++++++++++.+|+++|.+++++++||+|.  ++|   +++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEECH
T ss_pred             hhhhhhhccccccee------------eeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEEeH
Confidence            111222333332221            1267889999999999999999999999999999953  356   89999999


Q ss_pred             hhHHHHHHhhc
Q 015103          237 SDILKCICRHF  247 (413)
Q Consensus       237 ~dIl~~l~~~~  247 (413)
                      +||++|+..+.
T Consensus       147 ~dilk~l~~~~  157 (159)
T d2v8qe2         147 KRILKFLKLFI  157 (159)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHc
Confidence            99999997654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.84  E-value=3e-20  Score=157.25  Aligned_cols=133  Identities=25%  Similarity=0.568  Sum_probs=114.7

Q ss_pred             cccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCc
Q 015103          260 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE  339 (413)
Q Consensus       260 ~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~  339 (413)
                      |+.++.+|+|.         +++++.+++++.+|++.|.+++++++||+|++|+++|+++..|++...........   +
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~---~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNL---D   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGG---G
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhcccccccc---c
Confidence            56777788875         68999999999999999999999999999999999999999999987765443333   4


Q ss_pred             ccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          340 MNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       340 ~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .++.+++....       .+..++.+|.+++++.++++.|.+++++++|||| ++|+++|+||++||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            67888775432       4456788999999999999999999999999999 68999999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.2e-20  Score=152.89  Aligned_cols=136  Identities=25%  Similarity=0.504  Sum_probs=107.4

Q ss_pred             cccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhc
Q 015103          256 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  335 (413)
Q Consensus       256 ~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~  335 (413)
                      ++..+++++.+++|         .++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++..........
T Consensus         3 ~~~~~i~~l~~~~~---------~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~   73 (140)
T d2nyca1           3 FLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDL   73 (140)
T ss_dssp             GGGSBGGGSSCCBC---------SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----C
T ss_pred             cccCcHHHhCCccC---------CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhcccccc
Confidence            35677777765554         479999999999999999999999999999999999999999999997764433222


Q ss_pred             ccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          336 HLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       336 ~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                         ...+.+.+....       .+..++++|++++++.+|++.|.+++++++|||| ++|+++|+||.+||+++|+
T Consensus        74 ---~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          74 ---SLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ---CSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---ccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence               234454443221       3345788999999999999999999999999999 6999999999999999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=1e-20  Score=154.09  Aligned_cols=121  Identities=16%  Similarity=0.292  Sum_probs=103.6

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++........   ......+++       
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~---~~~~~~v~~-------   71 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL---DPNTATAGE-------   71 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC---CTTTSBHHH-------
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC---CcccceEEE-------
Confidence            4678899999999999999999999999999999999989999999999999873322211   111344555       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                            +|.+++.++++++++.+|++.|.+++++++||+|  +|+++|+||++||+++|
T Consensus        72 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          72 ------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             ------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             ------EeeccceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence                  5667899999999999999999999999999999  38999999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.82  E-value=3.9e-20  Score=154.01  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=106.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc----cCcccHHHHHh
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH----LDEMNIHQALQ  347 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~----l~~~~v~~~l~  347 (413)
                      +++++|+++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++...........    ..+.++.+   
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE---   79 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH---
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH---
Confidence            57788999999999999999999999999999999999999999999999999866543211110    11223433   


Q ss_pred             cCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          348 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       348 ~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                                +|.+++.+|++++++.+|++.|.+++++++||+|  +|+++|+||++||++++..
T Consensus        80 ----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 ----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHHH
T ss_pred             ----------hhccccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence                      7888999999999999999999999999999999  3899999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.81  E-value=1.7e-20  Score=159.25  Aligned_cols=139  Identities=18%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcc-cCccc----HHHH-
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH-LDEMN----IHQA-  345 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~-l~~~~----v~~~-  345 (413)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++............ .....    .... 
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            56778999999999999999999999999999999999999999999999997644321111100 00000    0000 


Q ss_pred             ----H--hcCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          346 ----L--QLGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       346 ----l--~~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                          .  ........+++ +|++++.+|.+++++.++++.|.+++++++||+| ++|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence                0  00111233444 8889999999999999999999999999999999 5899999999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=1.1e-19  Score=151.89  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=106.2

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.+++.++++++++.+|++.|.+++++++||+|++|+++|++|.+|+++........   ..+.++++       
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~-------   73 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKK---PDEVPIRL-------   73 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCC---GGGSBGGG-------
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccc---cccccccc-------
Confidence            57788999999999999999999999999999999999999999999999998744321111   11234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|.+++++|++++++.+|++.|.+++++++|||| ++|+++|+||..||+++|.
T Consensus        74 ------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                  7888999999999999999999999999999999 5899999999999999864

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=9.1e-20  Score=152.78  Aligned_cols=138  Identities=33%  Similarity=0.586  Sum_probs=114.8

Q ss_pred             ccccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhh
Q 015103          255 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  334 (413)
Q Consensus       255 ~~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~  334 (413)
                      .++.++++++.++++.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++..+.......
T Consensus         5 ~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~   75 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN   75 (145)
T ss_dssp             GGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCC
T ss_pred             HHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccc
Confidence            3456777777766653         6889999999999999999999999999999999999999999988665443322


Q ss_pred             cccCcccHHHHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          335 IHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       335 ~~l~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .   +.++.++.....       .|..++.+|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++|+.
T Consensus        76 ~---~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          76 L---DVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             C---SSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHHS
T ss_pred             h---hhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHHh
Confidence            2   346666544322       5667888999999999999999999999999999 68999999999999999974

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.80  E-value=1.7e-19  Score=147.65  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=106.0

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      .|+++|+++++++.+++++.+|+++|.+++++++||+| +|+++|++|..|+++....+...     +.++.+       
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~-----~~~v~~-------   71 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSL-----ETKAEE-------   71 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCT-----TCBGGG-------
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccc-----cchhhh-------
Confidence            57788999999999999999999999999999999998 58999999999999866543221     234444       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|.+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||++||+++|..
T Consensus        72 ------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          72 ------FMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             ------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ------hhhhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence                  6667899999999999999999999999999999 58999999999999999853

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=5e-19  Score=143.35  Aligned_cols=120  Identities=19%  Similarity=0.245  Sum_probs=104.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|++++.++.+++++.+|++.|.+++++.+||++ +|+++|++|.+|+++.+..+..    +.+.++.+       
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~-------   68 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWE-------   68 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHH-------
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEee-------
Confidence            36778999999999999999999999999999999997 5899999999999986654322    22456766       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|.++++++++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++.+
T Consensus        69 ------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          69 ------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             ------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHC
T ss_pred             ------ecccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcCC
Confidence                  6777899999999999999999999999999987  589999999999999853

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=6.5e-19  Score=145.14  Aligned_cols=121  Identities=19%  Similarity=0.354  Sum_probs=104.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      .++++|+++++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++....+...    .+.++++       
T Consensus         6 pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~v~~-------   74 (132)
T d2yzia1           6 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP----YDIPVER-------   74 (132)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCC----TTSBGGG-------
T ss_pred             cHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCc----cceeEee-------
Confidence            45667999999999999999999999999999999999999999999999998854422111    1234544       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            +|.+++.++++++++.++++.|.+++++++||++  +|+++|+||.+||++++.
T Consensus        75 ------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          75 ------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             ------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             ------cccccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                  7778899999999999999999999999999877  599999999999999874

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=4e-20  Score=150.36  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=87.8

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.++++++++++++.+|++.|.+++++.+||+|++|+++|++|.+|++....          +.++.+       
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~----------~~~~~~-------   64 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD----------EEQLAM-------   64 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C-------
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc----------ccchhh-------
Confidence            456778889999999999999999999999999999999999999999999876322          112222       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|.+++++|++++++.+|++.|.+++++++|||| ++|+++|+||++||+++++.
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 ------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             ------ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                  6777899999999999999999999999999999 68999999999999998864

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=3.9e-19  Score=146.48  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=102.9

Q ss_pred             cccccC--CCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-hhcccCcccHHHHHhc
Q 015103          272 RIGEAN--GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQIHLDEMNIHQALQL  348 (413)
Q Consensus       272 ~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~-~~~~l~~~~v~~~l~~  348 (413)
                      +++++|  ...++++.+++++.+|+++|.+++++++||+|++|+++|+++..|+++....... ......+.++++    
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~----   78 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE----   78 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH----
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccc----
Confidence            355566  4678999999999999999999999999999999999999999999986653221 111222445665    


Q ss_pred             CCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          349 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       349 ~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                               +|.++++++++++++.++++.|.+++  .+|||| ++|+++|+||++||+++|.
T Consensus        79 ---------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          79 ---------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             ---------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------cccccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHH
Confidence                     66678999999999999999998765  599999 6899999999999999985

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=3.7e-19  Score=145.59  Aligned_cols=115  Identities=12%  Similarity=0.262  Sum_probs=97.9

Q ss_pred             CCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCCCccc
Q 015103          279 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF  358 (413)
Q Consensus       279 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~  358 (413)
                      ++++++.+++++.+|+++|.+++++++||++ +|+++|++|..|+++.........   .+.++++             +
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~---~~~~v~~-------------i   75 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPV---KDTQVKE-------------I   75 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCG---GGSBGGG-------------T
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccc---cceeEee-------------e
Confidence            4789999999999999999999999999998 789999999999987543211110   1233443             7


Q ss_pred             CCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          359 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       359 m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      |++++.+|.+++++.+|++.|.+++++++||+|  +|+++|+||.+||++++++
T Consensus        76 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          76 MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ccceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHHhC
Confidence            788999999999999999999999999999999  4899999999999999864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.78  E-value=1.1e-18  Score=142.63  Aligned_cols=113  Identities=19%  Similarity=0.308  Sum_probs=95.5

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCCC
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANP  354 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~~  354 (413)
                      |..+++++++++++.+|+++|.+++++++||+|+  +|+++|++|.+|+......+         .+...          
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~----------   63 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISE----------   63 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTT----------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceee----------
Confidence            4456789999999999999999999999999996  68999999999997643211         11111          


Q ss_pred             CcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          355 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       355 ~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                        ..|..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++++.
T Consensus        64 --~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          64 --HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             --SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --eeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence              04566788999999999999999999999999999 6899999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=4.2e-19  Score=145.26  Aligned_cols=115  Identities=15%  Similarity=0.248  Sum_probs=102.3

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      +++.+|+++++++++++++.+|++.|.+++     ++.+||+|++|+++|+++..++.....          +.++++  
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~----------~~~v~~--   69 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD----------DTLIAD--   69 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCT----------TSBHHH--
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccc----------cEEhhh--
Confidence            467789999999999999999999998774     789999999999999999988864211          346666  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                                 +|.++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++
T Consensus        70 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          70 -----------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             -----------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHH
T ss_pred             -----------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHH
Confidence                       7888899999999999999999999999999999 589999999999999876

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=5e-19  Score=147.34  Aligned_cols=127  Identities=11%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhh--hcccCcccHHHHHhcC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLG  349 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~--~~~l~~~~v~~~l~~~  349 (413)
                      .++++|+++++++++++++.+|+++|.+++++++||+|++++++|+++..|+.+........  .......++++     
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~-----   77 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD-----   77 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH-----
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHH-----
Confidence            35677999999999999999999999999999999999999999999999998865432211  11111234444     


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                              +|.++++++.+++++.++++.|.+++++++||+| ++|+++|+||++||+++|.+
T Consensus        78 --------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd-~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          78 --------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             --------HhCcccccccccchhhHHHHHHHHcCCCEEEEEc-cCCEEEEEEEHHHHHHHHHH
Confidence                    7777899999999999999999999999999999 58999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=9.5e-19  Score=146.37  Aligned_cols=133  Identities=7%  Similarity=0.130  Sum_probs=103.7

Q ss_pred             ccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHh--cCC
Q 015103          273 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQ--LGQ  350 (413)
Q Consensus       273 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~--~~~  350 (413)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++...........     ......  ...
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~   80 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIP-----KEELIRSSMKR   80 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC------------CCCC
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccc-----hhHHHHhhhhh
Confidence            4566889999999999999999999999999999999999999999999999866543332211     001010  000


Q ss_pred             CCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          351 DANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       351 ~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ....+++ +| .+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|..
T Consensus        81 ~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          81 LIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHH
T ss_pred             ccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHHh
Confidence            0111222 33 4567899999999999999999999999999 58999999999999999863

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=6.8e-19  Score=142.75  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.++++++.+++++.+|+++|.+++.+++||+|++|+++|+++..|++++..          +.++.+       
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~-------   64 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFN-------   64 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGG-------
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccc-------
Confidence            356779999999999999999999999999999999999999999999999875311          123333       


Q ss_pred             CCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                            +|..+++++++++++.++++.|.+++...+|||| ++|+++|+||..||++++..
T Consensus        65 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          65 ------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHHH
Confidence                  5667888999999999999999999999999999 68999999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.76  E-value=7.6e-18  Score=142.86  Aligned_cols=141  Identities=16%  Similarity=0.240  Sum_probs=108.5

Q ss_pred             cccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC--CCcEEEEEeHHHHHHHHhhhhhhhc--ccC-cccHHH
Q 015103          270 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAYAQI--HLD-EMNIHQ  344 (413)
Q Consensus       270 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiit~~dl~~~~~~~~~~~~--~l~-~~~v~~  344 (413)
                      .-+++++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++........  ... ..+...
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~   89 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEE   89 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccch
Confidence            34788999999999999999999999999999999999984  4789999999999986653222111  000 011111


Q ss_pred             HHh----cCCCCCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          345 ALQ----LGQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       345 ~l~----~~~~~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      ...    .........+ +|.++++++.+++++.+|++.|.+.+++++||+|  +|+++|+||++||+++|-|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          90 IYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence            111    1111111222 7888999999999999999999999999999998  4899999999999999865

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=3.5e-19  Score=149.01  Aligned_cols=116  Identities=18%  Similarity=0.272  Sum_probs=101.4

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHH
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQAL  346 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l  346 (413)
                      +++.+|+++++++++++++.+|+++|.+++     ++.+||+|++|+++|+++.+|+.....          +.++.+  
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~--   69 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAE--   69 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTT--
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHH--
Confidence            567889999999999999999999998774     788999999999999999999865211          122322  


Q ss_pred             hcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          347 QLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       347 ~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                                 +|.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        70 -----------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          70 -----------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             -----------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             -----------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                       7788999999999999999999999999999999 5899999999999999873

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.75  E-value=1.7e-18  Score=141.55  Aligned_cols=117  Identities=15%  Similarity=0.196  Sum_probs=101.7

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHhC-----CccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccc
Q 015103          182 GNGRPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI  256 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~-----~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~  256 (413)
                      ++|.+|.++++++++++|+.+|++.|.++     +++.+||+|+   +|   +++|+++.++++.             ..
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~-------------~~   62 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIV-------------ND   62 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTT-------------SC
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeecccc-------------cc
Confidence            45678999999999999999999999877     4789999976   56   8999999998864             11


Q ss_pred             ccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          257 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       257 ~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      ..            ..++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++.++.+
T Consensus        63 ~~------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          63 DD------------TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             TT------------SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cc------------EEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            11            24566799999999999999999999999999999999999999999999999997754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.74  E-value=4.8e-18  Score=139.51  Aligned_cols=120  Identities=20%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG  349 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~  349 (413)
                      +++++|+++++++++++++.+|++.|.+++++++||+  |++++++|+++..|+.+....+.....     .        
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~-----~--------   68 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDG-----P--------   68 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTS-----B--------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccccc-----c--------
Confidence            5778899999999999999999999999999999999  556899999999999987654322111     1        


Q ss_pred             CCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          350 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       350 ~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                            ...+..++.++.+++++.+|+++|.+++++++|||| ++|+++|+||+.||++++.
T Consensus        69 ------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~~  123 (131)
T d2riha1          69 ------AMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFERA  123 (131)
T ss_dssp             ------SGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCHH
T ss_pred             ------cccccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                  113345788999999999999999999999999999 6899999999999998753

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2.6e-18  Score=143.59  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCcEEeCCCCCHHHHHHHHHhCC-----ccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcc
Q 015103          181 DGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP  255 (413)
Q Consensus       181 ~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~-----v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~  255 (413)
                      |++|++|+++++++++++|+.+|+++|.+++     ++.+||+|+   +|   +++|+++.+|++..             
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~dl~~~-------------   61 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA-------------   61 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TC---BBCCBCBHHHHTTS-------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CC---CEecccchhhhhhc-------------
Confidence            5678899999999999999999999998774     789999976   56   89999999998651             


Q ss_pred             cccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          256 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       256 ~~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      ...            ..+.++|.+++.++.+++++.+|++.|.+++++++||||++|+++|+||.+|+++++..
T Consensus        62 ~~~------------~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPR------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTT------------CBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             ccc------------cchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            111            23455689999999999999999999999999999999999999999999999997653

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.73  E-value=1.3e-17  Score=136.31  Aligned_cols=120  Identities=21%  Similarity=0.288  Sum_probs=103.9

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccc
Q 015103          182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV  261 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i  261 (413)
                      .++++|.++++++.+++++.+|+++|.+++++++||+++    |   +++|++|.+|+++++.....        ...  
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~----~---~~~Givt~~dl~~~~~~~~~--------~~~--   67 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG----N---KPVGIITERDIVKAIGKGKS--------LET--   67 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHHHTTCC--------TTC--
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc----c---chhhhcchhHHHHHHHhhcc--------ccc--
Confidence            345689999999999999999999999999999999964    4   79999999999997754221        112  


Q ss_pred             cccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          262 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       262 ~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                                .++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.+.
T Consensus        68 ----------~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          68 ----------KAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             ----------BGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----------hhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence                      344557788999999999999999999999999999999999999999999999765

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=3e-18  Score=141.53  Aligned_cols=130  Identities=9%  Similarity=0.131  Sum_probs=103.8

Q ss_pred             cccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCC
Q 015103          272 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD  351 (413)
Q Consensus       272 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~  351 (413)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|  ++++|+++..++++...........   ......+.    
T Consensus         2 ~V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----   72 (135)
T d3ddja2           2 NIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCS---QGDLYHIS----   72 (135)
T ss_dssp             SGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CC---HHHHHHHH----
T ss_pred             EeeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhccccccchh---hhhccccc----
Confidence            46778988999999999999999999999999999997  4799999999998865422211110   00011111    


Q ss_pred             CCCCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          352 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       352 ~~~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                       ..+++ +|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+||++||++++..
T Consensus        73 -~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          73 -TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             -TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGGG
T ss_pred             -cCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHHH
Confidence             11333 7888999999999999999999999999999999 68999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=6e-18  Score=143.20  Aligned_cols=138  Identities=13%  Similarity=0.150  Sum_probs=104.1

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCc------cc
Q 015103          183 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL------PI  256 (413)
Q Consensus       183 ~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~------~~  256 (413)
                      +..+|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|..|+++.+...........      ..
T Consensus         6 v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (156)
T d2yzqa1           6 IEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW   79 (156)
T ss_dssp             STTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC---------------
T ss_pred             HHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhh
Confidence            44689999999999999999999999999999999975   56   89999999999875432211100000      00


Q ss_pred             -----ccccccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          257 -----LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       257 -----~~~~i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                           ................++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|++||+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          80 ILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                 0000111111122346788999999999999999999999999999999999999999999999999874

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=3.9e-17  Score=136.36  Aligned_cols=134  Identities=13%  Similarity=0.186  Sum_probs=103.8

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      .+|..+++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+||++++....................+
T Consensus         8 ~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (145)
T d1o50a3           8 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   81 (145)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             HhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc
Confidence            368899999999999999999999999999999976   46   899999999999988765433211111111111111


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                          ....++++|. +++++.+++++.+|+++|.+++++++||||++|+++|+||.+|+++.+..
T Consensus        82 ----~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          82 ----IAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             ----SSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ----cccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                1123444454 45689999999999999999999999999999999999999999997653

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.72  E-value=1.6e-17  Score=138.46  Aligned_cols=121  Identities=13%  Similarity=0.138  Sum_probs=103.5

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.++++++++++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++.+......           .. 
T Consensus         6 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~-----------~~-   67 (142)
T d1pvma4           6 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK-----------PD-   67 (142)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC-----------GG-
T ss_pred             HHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc-----------cc-
Confidence            4579999999999999999999999999999999975   45   899999999998855432111           01 


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ...++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..||++.+.
T Consensus        68 ------~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          68 ------EVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ------GSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             ------ccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHh
Confidence                  12356668899999999999999999999999999999999999999999999998554

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.1e-17  Score=140.22  Aligned_cols=134  Identities=15%  Similarity=0.197  Sum_probs=102.6

Q ss_pred             cccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhhhc-ccC---cccHHH
Q 015103          272 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQI-HLD---EMNIHQ  344 (413)
Q Consensus       272 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~~~~-~l~---~~~v~~  344 (413)
                      ++.|+|.  .+++++..++++.+|++.|.+++++++||+|+ +++++|+++..|++........... ...   ......
T Consensus        14 t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (159)
T d2v8qe2          14 RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIET   93 (159)
T ss_dssp             BGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHH
T ss_pred             EEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhccc
Confidence            4455563  46789999999999999999999999999974 6899999999999986653222111 000   011111


Q ss_pred             HHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 015103          345 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL  411 (413)
Q Consensus       345 ~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~  411 (413)
                      ....      ....|..++++|++++++.+|+++|.++++|++||+|+++|+++|+||.+||+++|.
T Consensus        94 ~~~~------~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          94 WREV------YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HHHH------HSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             ccce------eeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            0000      001677889999999999999999999999999999855789999999999999985

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.71  E-value=1.9e-17  Score=137.36  Aligned_cols=127  Identities=17%  Similarity=0.239  Sum_probs=104.6

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      .++|.++++++.+++|+.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++.........    ...    
T Consensus         5 ~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~----~~~----   70 (139)
T d2o16a3           5 EDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQ----GDS----   70 (139)
T ss_dssp             GGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             HHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhc----ccc----
Confidence            3578899999999999999999999999999999975   56   899999999999988665432110    000    


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .   .....++++|.+++.++++++++.+|+++|.+++++++||+| +|+++|++|++|+++++.
T Consensus        71 ~---~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          71 L---AFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             -----CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred             c---ccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            0   111246677999999999999999999999999999999998 589999999999999665

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=3.8e-18  Score=138.65  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=99.3

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+||++.+......               
T Consensus         5 diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~---------------   63 (123)
T d1y5ha3           5 DIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD---------------   63 (123)
T ss_dssp             HHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC---------------
T ss_pred             HhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCC---------------
Confidence            368889999999999999999999999999999975   45   899999999998744332111               


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                         .....++++|.+++.++.+++++.+|++.|.+++++++||+| +|+++|++|+.||++.
T Consensus        64 ---~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          64 ---PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             ---TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ---cccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence               011245667889999999999999999999999999999998 5899999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.70  E-value=1.4e-16  Score=129.72  Aligned_cols=115  Identities=14%  Similarity=0.203  Sum_probs=94.8

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103          187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  266 (413)
Q Consensus       187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i  266 (413)
                      |..+++++++++|+.+|+++|.+++++++||+|+ ..+|   +++|++|.+||++...            ...+.     
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~------------~~~~~-----   61 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISD------------YNAPI-----   61 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSC------------SSSBT-----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhc------------cCCce-----
Confidence            4456789999999999999999999999999964 2234   8999999999976211            11111     


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          267 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       267 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            ....|..+++++.+++++.+|+++|.+++++++||||++|+++|+||++|++++..
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence                  12235678889999999999999999999999999999999999999999999665

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.69  E-value=1.3e-18  Score=140.79  Aligned_cols=115  Identities=18%  Similarity=0.209  Sum_probs=60.7

Q ss_pred             CCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhcCCCCC
Q 015103          277 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN  353 (413)
Q Consensus       277 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~~~~~~  353 (413)
                      |.++++++.+++++.+|+++|.+++++++||+|+   +|+++|++|.+|+........       +.++.+         
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~-------~~~~~~---------   65 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEH-------DRFLEE---------   65 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC--------------------------------------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcccc-------CceeEE---------
Confidence            3345679999999999999999999999999985   679999999999864332111       112221         


Q ss_pred             CCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 015103          354 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL  410 (413)
Q Consensus       354 ~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l  410 (413)
                        ...+..+++++.+++++.+|++.|.+++++++|||| ++|+++|+||++||++..
T Consensus        66 --~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          66 --IMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             --CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             --EEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence              013345788999999999999999999999999999 689999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1e-16  Score=131.76  Aligned_cols=119  Identities=16%  Similarity=0.252  Sum_probs=101.8

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      .++|.++++++++++|+.+|++.|.+++++++||+|+   +|   +++|++|..|+++++.....       ...     
T Consensus         8 ~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~-------~~~-----   69 (132)
T d2yzia1           8 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYD-----   69 (132)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTT-----
T ss_pred             HHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccC-------ccc-----
Confidence            3478999999999999999999999999999999975   45   89999999999986543211       011     


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                             ..++++|.+++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|++++..
T Consensus        70 -------~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          70 -------IPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             -------SBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             -------eeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                   245666889999999999999999999999999999875 799999999999999765

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1e-16  Score=129.64  Aligned_cols=113  Identities=14%  Similarity=0.159  Sum_probs=99.4

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|.+++.++++++|+.+|+++|.+++.+.+||+|+   +|   +++|+++.+|++++             ...      
T Consensus         5 ~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~---~~~Gii~~~dl~~~-------------~~~------   59 (121)
T d1vr9a3           5 KWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDL-------------DLD------   59 (121)
T ss_dssp             GGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTS-------------CTT------
T ss_pred             hhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC---Cc---eeEEEeehhhhhhh-------------hcc------
Confidence            468899999999999999999999999999999965   55   89999999998651             111      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                            .++.++|..++.++++++++.++++.|.+++...+||+|++|+++|++|..|+++.+.
T Consensus        60 ------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          60 ------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ------ccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence                  2345558888999999999999999999999999999999999999999999999664

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=1.4e-17  Score=137.43  Aligned_cols=127  Identities=18%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|.++++++++++|+.+|++.|.+++++++||+|+        +++|+++..++++++........         ....
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~---------~~~~   67 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSC---------SQGD   67 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---C---------CHHH
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccch---------hhhh
Confidence            478888999999999999999999999999999954        69999999999986643221110         0000


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                      .......+++++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++++.
T Consensus        68 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          68 LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            0011223567789999999999999999999999999999999999999999999999998664

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.3e-16  Score=132.38  Aligned_cols=125  Identities=18%  Similarity=0.165  Sum_probs=96.7

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ..+.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++........      ...+...
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~~   80 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGEA   80 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----C------CSBHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHHHhhcccccc------ccchhhh
Confidence            367889999999999999999999999999999975   56   89999999999998875433211      1111110


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                            ......+..++.++.+++++.+|+++|.+++++++||||++|+++|++|.+|+++++
T Consensus        81 ------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          81 ------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             ------hhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence                  011223456788999999999999999999999999999999999999999999854

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=1.4e-16  Score=137.77  Aligned_cols=136  Identities=12%  Similarity=0.200  Sum_probs=101.0

Q ss_pred             ccccCC--CCceEecCCCCHHHHHHHHHhCCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhhhh-hhcc-----cCcccHH
Q 015103          273 IGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAY-AQIH-----LDEMNIH  343 (413)
Q Consensus       273 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~dl~~~~~~~~~-~~~~-----l~~~~v~  343 (413)
                      +.++|.  .+++++.+++++.+|++.|.+++++++||+|+ +++++|++|..|+++.+..... ....     +......
T Consensus        22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~  101 (179)
T d2ooxe1          22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLL  101 (179)
T ss_dssp             HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHH
T ss_pred             eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchh
Confidence            445565  46899999999999999999999999999984 6899999999999986542111 1100     0000111


Q ss_pred             HHHhcCCCCCCCcccCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCC----CCeEEEEEehHHHHHHhhc
Q 015103          344 QALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG----SKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       344 ~~l~~~~~~~~~~~~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~----~~~liGvIS~~DIl~~l~~  412 (413)
                      .......    ....|..++++|.++++|.+|++.|.+++++++||+|++    +++++|+||++||+++|..
T Consensus       102 ~~~~~~~----~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1         102 GLREVER----KIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             HHHHHHH----HTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             hhcccce----eeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            1000000    012677889999999999999999999999999999842    2379999999999999964

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.67  E-value=9.3e-17  Score=129.70  Aligned_cols=115  Identities=17%  Similarity=0.218  Sum_probs=99.4

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccc
Q 015103          185 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  264 (413)
Q Consensus       185 ~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l  264 (413)
                      ++|+++++++++++|+.+|++.|.+++++.+||.++    |   +++|++|.+||++++......       ..      
T Consensus         4 diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~----~---~~~Gvit~~Di~~~l~~~~~~-------~~------   63 (120)
T d1pbja3           4 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE----G---VRVGIVTTWDVLEAIAEGDDL-------AE------   63 (120)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET----T---EEEEEEEHHHHHHHHHHTCCT-------TT------
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC----C---cEEEEEEeeeccccccccccc-------cc------
Confidence            368899999999999999999999999999999853    5   899999999999987653211       11      


Q ss_pred             ccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          265 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       265 ~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                            ..++++|.+++.++.+++++.+|+++|.+++++++||++ +|+++|++|.+|++++
T Consensus        64 ------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          64 ------VKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------SBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------eeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                  235566889999999999999999999999999999986 6899999999999885

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=6.8e-17  Score=132.77  Aligned_cols=130  Identities=18%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeeceeCCCCeEEEEeehHHHHHHHHHhccCCCCCCHHHHhhccH
Q 015103           85 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  164 (413)
Q Consensus        85 ~~~~dl~p~s~kvv~l~~~~~v~~A~~~l~~~~i~s~pV~d~~~~~~vGvlt~~D~l~il~~~~~~~~~l~~~~l~~~~i  164 (413)
                      .|+.++|..+.+|+.++.+.|+.+|++.|.+++++++||+|++ ++++|++|..|++..+....    ....+.....++
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~----~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLE----RIEFEKLDQITV   76 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSS----SBCGGGTTTSBH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccc----cccccccccccc
Confidence            5788888888999999999999999999999999999999976 67999999999997664221    111122222232


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHH
Q 015103          165 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  244 (413)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~  244 (413)
                      ..                   +|.+++.++.+++++.+|+.+|.+++  .+||+|+   +|   +++|++|.+||++++.
T Consensus        77 ~~-------------------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~---~~---~~~Givt~~dil~~l~  129 (132)
T d1yava3          77 EE-------------------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND---EQ---VFEGIFTRRVVLKELN  129 (132)
T ss_dssp             HH-------------------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT---TC---BEEEEEEHHHHHHHHH
T ss_pred             cc-------------------cccccccccccchhHHHHHHHHHhCC--EEEEEcc---CC---EEEEEEEHHHHHHHHH
Confidence            22                   36778999999999999999998765  4999975   56   8999999999999887


Q ss_pred             hh
Q 015103          245 RH  246 (413)
Q Consensus       245 ~~  246 (413)
                      ++
T Consensus       130 ~~  131 (132)
T d1yava3         130 KH  131 (132)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.67  E-value=3.5e-16  Score=127.59  Aligned_cols=113  Identities=18%  Similarity=0.268  Sum_probs=96.0

Q ss_pred             CCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccccc
Q 015103          189 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  268 (413)
Q Consensus       189 ~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~~  268 (413)
                      ++++++++++|+.+|+++|.+++++++||+++    +   +++|++|.+|+++.+......           .       
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~----~---~~vGiit~~Di~~~~~~~~~~-----------~-------   67 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMKD----E---KLVGILTERDFSRKSYLLDKP-----------V-------   67 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHHGGGSSSC-----------G-------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEccchhhhhhhhccc-----------c-------
Confidence            57899999999999999999999999999963    4   899999999998854322111           1       


Q ss_pred             ccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          269 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       269 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                      ....++++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        68 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          68 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             cceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence            11245666889999999999999999999999999999998 69999999999999853

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=1.1e-16  Score=132.98  Aligned_cols=124  Identities=10%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|+++++++++++|+.+|+++|.+++++++||+++   ++   +++|+++..|+++++......... ...         
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~---------   70 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYF---------   70 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHH---------
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccc---------
Confidence            58889999999999999999999999999999975   45   799999999999988654321100 000         


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                         ....++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.+.
T Consensus        71 ---~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          71 ---YGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             ---HTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ---cCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               112456678899999999999999999999999999999999999999999999998665

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2.1e-17  Score=134.03  Aligned_cols=111  Identities=16%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccc
Q 015103          186 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  265 (413)
Q Consensus       186 ~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~  265 (413)
                      +|.++++++++++++.+|+++|.+++++++||+|+   +|   +++|++|.+|++...             ...      
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~-------------~~~------   60 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNP-------------DEE------   60 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhh-------------ccc------
Confidence            57788999999999999999999999999999975   56   899999999987621             111      


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  327 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~  327 (413)
                            .++++|.++++++++++++.+|+++|.+++++++||+|++|+++|++|.+|+++..
T Consensus        61 ------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             ------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                  24455888899999999999999999999999999999999999999999998743

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.66  E-value=3.9e-16  Score=132.06  Aligned_cols=142  Identities=11%  Similarity=0.047  Sum_probs=108.2

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCc-cccccc
Q 015103          182 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQQP  260 (413)
Q Consensus       182 ~~~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~-~~~~~~  260 (413)
                      .++++|.++++++++++|+.+|+++|.+++++++||+++ .+++   .++|+++..|+++.+........... ......
T Consensus        12 ~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          12 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             EHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhcccc
Confidence            356789999999999999999999999999999999974 2334   79999999999998876543211000 000000


Q ss_pred             -----ccccccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          261 -----VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       261 -----i~~l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                           ............++++|.++++++.+++++.+|+++|.+++++++||++ +|+++|+||++||++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                 0000001112345677889999999999999999999999999999998 699999999999998653

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=2.7e-16  Score=128.86  Aligned_cols=118  Identities=16%  Similarity=0.209  Sum_probs=98.6

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccc
Q 015103          184 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  263 (413)
Q Consensus       184 ~~~~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~  263 (413)
                      +++|.++++++++++|+.+|++.|.+++++++||++.+. .+   +++|+++..++++++.......        .    
T Consensus         4 ~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~----   67 (131)
T d2riha1           4 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------G----   67 (131)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------S----
T ss_pred             HHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------c----
Confidence            457899999999999999999999999999999996422 34   8999999999999776532110        0    


Q ss_pred             cccccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          264 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       264 l~i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                               ....+..+..++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++.
T Consensus        68 ---------~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          68 ---------PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ---------BSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ---------ccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                     111244567789999999999999999999999999999999999999999874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.5e-16  Score=133.33  Aligned_cols=129  Identities=15%  Similarity=0.215  Sum_probs=94.9

Q ss_pred             eEecCCCCHHHHHHHHHhCCCCEEEEE--cCCCcEEEEEeHHHHHHHHhhhhhhhcccCcccHHHHHhc------CCCCC
Q 015103          282 AMLRPTASLGSALALLVQADVSSIPIV--DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL------GQDAN  353 (413)
Q Consensus       282 ~~v~~~~~l~~a~~~m~~~~~~~lpVv--d~~g~lvGiit~~dl~~~~~~~~~~~~~l~~~~v~~~l~~------~~~~~  353 (413)
                      +.+.+++++.+|.++|.+++++++||+  +++++++|++|.+|++.++.................+...      .....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            445678899999999999999999999  4578999999999999866533222111101110000000      00011


Q ss_pred             CCcc-cCCCcceEEeCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 015103          354 PSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG  412 (413)
Q Consensus       354 ~~~~-~m~~~~~~v~~~~sl~~~~~~m~~~~~~~l~VVd~~~~~liGvIS~~DIl~~l~~  412 (413)
                      .+++ +|.+++.+|.+++++.+++++|.+++.+++||+|  +|+++|+||++||++++..
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            1123 7888899999999999999999999999999887  5899999999999999853

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.63  E-value=1.8e-15  Score=127.35  Aligned_cols=123  Identities=22%  Similarity=0.199  Sum_probs=99.6

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccc
Q 015103          188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  267 (413)
Q Consensus       188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~  267 (413)
                      .++++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|.+|+++++......      ....++.+.   
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~---   75 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEA---   75 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHH---
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhh---
Confidence            468999999999999999999999999999975   45   899999999999877543211      112222211   


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          268 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       268 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                         -+....+..++.++.+++++.+++++|.+++++++||+|++|+++|++|++|+++++.
T Consensus        76 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          76 ---LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII  133 (153)
T ss_dssp             ---HHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             ---eeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence               0122335567889999999999999999999999999999999999999999999654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.62  E-value=1.9e-17  Score=133.83  Aligned_cols=117  Identities=19%  Similarity=0.236  Sum_probs=60.2

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCccccccccccccc
Q 015103          187 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  266 (413)
Q Consensus       187 ~~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i  266 (413)
                      |.++++++++++|+.+|+++|.+++++++||+++....+   +++|++|.+|+.......          ...+....  
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~--   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI--   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C--
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE--
Confidence            445667999999999999999999999999997533344   899999999985422111          11111111  


Q ss_pred             ccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 015103          267 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  326 (413)
Q Consensus       267 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~  326 (413)
                              ..+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++|+++.
T Consensus        67 --------~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 --------MTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             --------CSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             --------EeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                    1134578899999999999999999999999999999999999999999874

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.3e-15  Score=127.03  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCcccccccccccccc
Q 015103          188 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  267 (413)
Q Consensus       188 ~~~~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~~~~~~~i~~l~i~  267 (413)
                      .++++++.+++|+.+|+++|.+++++++||+|+   +|   +++|++|..|+++++......      ....++...   
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~---   83 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA---   83 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH---
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhc---
Confidence            467899999999999999999999999999975   55   899999999998765432111      111222111   


Q ss_pred             cccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 015103          268 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  328 (413)
Q Consensus       268 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~  328 (413)
                         ......|..++.++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++-
T Consensus        84 ---~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ---LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ---GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ---cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence               1233446778889999999999999999999999999999999999999999999553

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.5e-14  Score=121.32  Aligned_cols=134  Identities=10%  Similarity=0.099  Sum_probs=101.6

Q ss_pred             cEEeCCCCCHHHHHHHHHhCCccEEEEEecCCCCCCccceEEEeehhhHHHHHHhhccCCCCCc----ccc-cccccccc
Q 015103          191 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL----PIL-QQPVSSIQ  265 (413)
Q Consensus       191 ~v~v~~~~sl~ea~~~m~~~~v~~lpVvd~~~~~g~~~~l~Givt~~dIl~~l~~~~~~~~~~~----~~~-~~~i~~l~  265 (413)
                      .+.+.+++|+.+|.++|.+++++++||+++ .+++   +++|++|.+||++++...........    ..+ ........
T Consensus        19 ~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (169)
T d2j9la1          19 TVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPP   94 (169)
T ss_dssp             CCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCT
T ss_pred             EEECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhh
Confidence            355678899999999999999999999953 2345   89999999999998865422211000    000 01111111


Q ss_pred             cccccccccccCCCCceEecCCCCHHHHHHHHHhCCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 015103          266 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  329 (413)
Q Consensus       266 i~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~dl~~~~~~  329 (413)
                      .......++++|.+++.++.+++++.+++++|.+++++++||+| +|+++|+||++|+++++.+
T Consensus        95 ~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          95 YTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             TCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            22333467889999999999999999999999999999999987 7899999999999997653

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.10  E-value=2.3e-11  Score=91.18  Aligned_cols=36  Identities=42%  Similarity=0.903  Sum_probs=34.5

Q ss_pred             ceEEEcCeeeeCCCCCcccCCCCCcceEEEeccCCCC
Q 015103            2 YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM   38 (413)
Q Consensus         2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~~~~~   38 (413)
                      |||+|||+|++||+.|++.|..|+.||+|.| +++|+
T Consensus        49 YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi~V-~~~D~   84 (87)
T d1z0na1          49 YKFFVDGQWTHDPSEPIVTSQLGTVNNIIQV-KKTDF   84 (87)
T ss_dssp             EEEEETTEEECCTTSCEEECTTSCEEEEEEE-CSCTT
T ss_pred             EEEEECCEEEeCCCCCeeECCCCCEEEEEEE-CCCcc
Confidence            9999999999999999999999999999999 87775

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.10  E-value=2.1e-11  Score=91.57  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             ceEEEcCeeeeCCCCCcccCCCCCcceEEEecc
Q 015103            2 YKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVP   34 (413)
Q Consensus         2 ykf~vdg~w~~~~~~~~~~~~~g~~~~~~~~~~   34 (413)
                      |||+|||+|++||+.|++.|++|+.||+|.| +
T Consensus        55 YKFiVDG~w~~d~~~p~~~d~~G~~nnvi~V-~   86 (87)
T d2qlvb1          55 FRFIVDNELRVSDFLPTATDQMGNFVNYIEV-R   86 (87)
T ss_dssp             EEEEETTEEECCTTSCEEBCSSCCCEEEEEE-C
T ss_pred             EEEEECCcEEcCCCCCeeECCCCCEeEEEEE-E
Confidence            9999999999999999999999999999999 5

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.89  E-value=0.16  Score=36.87  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=17.2

Q ss_pred             CceEEEcCeeeeCCCCCcccCC
Q 015103            1 MYKFYVDGEWRHDENQPHVSGN   22 (413)
Q Consensus         1 ~ykf~vdg~w~~~~~~~~~~~~   22 (413)
                      +|||.|||+|+-||-.-+..+.
T Consensus        65 ~Y~y~vdg~~~~DPyar~~~~~   86 (97)
T d2bhua1          65 RYLFVLDGVPTPDPYARFLPDG   86 (97)
T ss_dssp             EEEEEETTEEECCTTCSCCTTC
T ss_pred             EEEEEECCeEccCCchhcCCCC
Confidence            4999999999988876555443