Citrus Sinensis ID: 015105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MAMMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccEEEEEcEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccHHHEEEcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccHHccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHcccc
Coil and Loop (DISEMBL)
MAMMLLIQKVASSRMMAMEKLlvdprcqpqqldeyiripkETIDILkdqvfgfdtffvtnqepyeggvlfkgnlrgqAAKTYEKISTRMKNKFGDQYKLFLLvnpeddkpvavvvprktlqpettavpewfaaGAFGLVTVFTLLLRNVPALQSNLlstfdnlnlltnglpGALVTALVIGVHELGHILAAKStgvelgvpyfvpswqigsfgaITRIRNIVSKREDLLKVaaagplagfSLGFVLFLVGfifppsdgigivVDASVFHESFLAGGFAKLLLgdvlkdgtpisvnPLVIWAWAGLLINAinsipageldggRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLqrgpiaplseeitdpddkyIALGVLVLFLGLLvclpypfpfsdqavsnf
Flexible Loop (DISEMBL)
MAMMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPyeggvlfkgnlrgQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPfpfsdqavsnf
Low Complexity Region (SEG)
MAMMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAgfslgfvlflvgfifPPSDGIGIVVDASVFHESflaggfaklllgDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTgvsivllglsslfsDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAlgvlvlflgllvclPYPFPFSDQAVSNF
Disordered region (IsUnstruct)
****************AMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPF********
Disordered Region (DISOPRED)
*********************************************LKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPR********AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSN*
Disordered Region (DISEMBL)
MAMMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Disordered Region (DISPRO)
*********************************EYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMMLLIQKVASSRMMAMEKLLVDPRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFSDQAVSNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
255571887	525	metalloendopeptidase, putative [Ricinus	0.941	0.740	0.835	0.0
297810677	558	peptidase M50 family protein [Arabidopsi	0.968	0.716	0.785	1e-180
356501144	523	PREDICTED: uncharacterized protein LOC10	0.941	0.743	0.830	1e-179
15239226	556	ethylene-dependent gravitropism-deficien	0.917	0.681	0.820	1e-179
242052155	545	hypothetical protein SORBIDRAFT_03g00653	0.929	0.704	0.770	1e-179
334187443	524	ethylene-dependent gravitropism-deficien	0.924	0.729	0.814	1e-178
42573279	527	ethylene-dependent gravitropism-deficien	0.924	0.724	0.814	1e-178
356551482	520	PREDICTED: uncharacterized protein LOC10	0.941	0.748	0.827	1e-178
359486422	543	PREDICTED: uncharacterized protein LOC10	0.941	0.716	0.840	1e-176
115434462	546	Os01g0142100 [Oryza sativa Japonica Grou	0.929	0.703	0.778	1e-174

>gi|255571887|ref|XP_002526886.1| metalloendopeptidase, putative [Ricinus communis] gi|223533785|gb|EEF35517.1| metalloendopeptidase, putative [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/389 (83%), Positives = 363/389 (93%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P  + QQLDE  RIPK TIDILKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+AAK+YEK
Sbjct: 137 PGVKTQQLDESFRIPKGTIDILKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKAAKSYEK 196

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           ++ RM+NKFGD+Y+LFLLVNPEDD+PVAVVVPRKTLQPETTAVPEWFAAGAFGLVT+FTL
Sbjct: 197 LTNRMQNKFGDEYRLFLLVNPEDDRPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTIFTL 256

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
           LLRNVPALQSNLLSTFDNL LL +GL GAL+TAL++GVHE+GHIL AKS+ V+LGVPYFV
Sbjct: 257 LLRNVPALQSNLLSTFDNLELLKDGLSGALITALILGVHEVGHILVAKSSDVKLGVPYFV 316

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRI NIV KREDLLKVAAAGPLAGF+LGFVLFLVGF+ PPSDGIG+VVD
Sbjct: 317 PSWQIGSFGAITRIVNIVPKREDLLKVAAAGPLAGFALGFVLFLVGFVLPPSDGIGLVVD 376

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHESFLAGG AKLLLGD LK+GTPISVNPLVIWAWAG+LINAINSIPAGELDGGRI 
Sbjct: 377 ASVFHESFLAGGIAKLLLGDALKEGTPISVNPLVIWAWAGMLINAINSIPAGELDGGRIL 436

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           FA+WGRKAS R T VSI LLG+S+LF+DV FYWVVL+ FLQRGPIAPLSEEITDP++KY+
Sbjct: 437 FAIWGRKASARFTAVSIGLLGISALFNDVAFYWVVLIAFLQRGPIAPLSEEITDPEEKYV 496

Query: 385 ALGVLVLFLGLLVCLPYPFPFSDQAVSNF 413
           +LG+LVL LGLLVCLPYPFPF+D+ +++F
Sbjct: 497 SLGILVLLLGLLVCLPYPFPFTDEVLTSF 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810677|ref|XP_002873222.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319059|gb|EFH49481.1| peptidase M50 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/401 (78%), Positives = 357/401 (89%), Gaps = 1/401 (0%)

Query: 7   IQKVASSRMMAMEKLLVDPRC-QPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYE 65
           ++    S M+++    +   C QP QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYE
Sbjct: 149 VKYKGDSLMLSIYLSFIKSCCEQPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYE 208

Query: 66  GGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETT 125
           GGVLFKGNLRG+ AK+YEKI TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETT
Sbjct: 209 GGVLFKGNLRGEPAKSYEKIKTRMENNFGDQYKLFLLSNPEDDKPVAVVVPRRSLEPETT 268

Query: 126 AVPEWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHEL 185
           AVPEWFAAG+FGLV +FTL LRNVPALQS+LLS FDNL LL +GLPGALVT LV+GVHEL
Sbjct: 269 AVPEWFAAGSFGLVALFTLFLRNVPALQSDLLSAFDNLELLKDGLPGALVTTLVLGVHEL 328

Query: 186 GHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFV 245
           GHIL A S G++LGVP+FVPSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +
Sbjct: 329 GHILVANSLGIKLGVPFFVPSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLI 388

Query: 246 LFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGL 305
           LFL+G   PPSDGIG+VVDASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGL
Sbjct: 389 LFLLGLFVPPSDGIGVVVDASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGL 448

Query: 306 LINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQ 365
           LIN INSIPAGELDGGRIAF++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQ
Sbjct: 449 LINGINSIPAGELDGGRIAFSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQ 508

Query: 366 RGPIAPLSEEITDPDDKYIALGVLVLFLGLLVCLPYPFPFS 406
           RGPIAPL+EEIT PDDKY++LG+LVLFL LLVCLPYPF F+
Sbjct: 509 RGPIAPLAEEITAPDDKYVSLGILVLFLSLLVCLPYPFAFT 549

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501144|ref|XP_003519388.1| PREDICTED: uncharacterized protein LOC100778800 [Glycine max]

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 323/389 (83%), Positives = 365/389 (93%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P  +PQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+PYEGGVLFKGNLRGQAAK+Y+K
Sbjct: 135 PGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGQAAKSYDK 194

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           IS R+K+KFGD+YKLFLLVNPEDDKPVAVVVPR TLQPETTAVPEWFAAG+FGL+TVFTL
Sbjct: 195 ISKRLKDKFGDEYKLFLLVNPEDDKPVAVVVPRTTLQPETTAVPEWFAAGSFGLITVFTL 254

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
           LLRNVPALQS+LLSTFDNLNLL +GLPGALVTAL++GVHELGH LAAK TGV+LGVPYFV
Sbjct: 255 LLRNVPALQSDLLSTFDNLNLLKDGLPGALVTALILGVHELGHFLAAKDTGVKLGVPYFV 314

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG +L L+GF+ PPSDGIG+VVD
Sbjct: 315 PSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALGLLLLLLGFVLPPSDGIGVVVD 374

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWAGLLINAINSIPAGELDGGRI+
Sbjct: 375 ASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWAGLLINAINSIPAGELDGGRIS 434

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+FFLQRGPIAPLSEEITDP +KY+
Sbjct: 435 FALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIFFLQRGPIAPLSEEITDPGEKYV 494

Query: 385 ALGVLVLFLGLLVCLPYPFPFSDQAVSNF 413
           A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 495 AIGVTVLLLGLLVCLPYPFPFTEETITSF 523

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239226|ref|NP_196193.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|9759099|dbj|BAB09668.1| unnamed protein product [Arabidopsis thaliana] gi|332003535|gb|AED90918.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 311/379 (82%), Positives = 348/379 (91%)

Query: 28  QPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 87
           QP QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct: 169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query: 88  RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 147
           RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct: 229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query: 148 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 207
           NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct: 289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query: 208 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASV 267
           QIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVDASV
Sbjct: 349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query: 268 FHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL 327
           FHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++
Sbjct: 409 FHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSI 468

Query: 328 WGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALG 387
           WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++LG
Sbjct: 469 WGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLG 528

Query: 388 VLVLFLGLLVCLPYPFPFS 406
           +LVLFL LLVCLPYPF F+
Sbjct: 529 ILVLFLSLLVCLPYPFAFT 547

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242052155|ref|XP_002455223.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor] gi|241927198|gb|EES00343.1| hypothetical protein SORBIDRAFT_03g006530 [Sorghum bicolor]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/384 (77%), Positives = 347/384 (90%)

Query: 30  QQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRM 89
           QQLD+ +RIPK TIDILKDQVFGFDTFFVT+QEPYEGGVLFKGNLRG+ AK+YEKI+ R+
Sbjct: 158 QQLDDSVRIPKATIDILKDQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPAKSYEKITNRL 217

Query: 90  KNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNV 149
           +NKFGD+YKLFLL+NPED+KPVAVV+P++TLQPETTA+PEWFAA +FG+VT+FTLLLRNV
Sbjct: 218 QNKFGDEYKLFLLINPEDEKPVAVVIPKQTLQPETTALPEWFAAASFGIVTIFTLLLRNV 277

Query: 150 PALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQI 209
           P LQ NLLSTFDNL LL +GL GALVTAL+IGVHE+GHILAA+ +G++LGVPYFVPSWQI
Sbjct: 278 PVLQDNLLSTFDNLELLKDGLSGALVTALIIGVHEIGHILAARESGIKLGVPYFVPSWQI 337

Query: 210 GSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFH 269
           GSFGAITRI NIV  REDLLK+AAAGPLAGFS GFVL L+GFI PPSDG+G+V+D +VFH
Sbjct: 338 GSFGAITRIVNIVRNREDLLKLAAAGPLAGFSFGFVLLLLGFILPPSDGLGLVIDPTVFH 397

Query: 270 ESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG 329
           ESFL GG AKLLLGDVLK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIA A+WG
Sbjct: 398 ESFLVGGLAKLLLGDVLKEGTELSINPLVLWAWAGLLINAINSIPAGELDGGRIALAIWG 457

Query: 330 RKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVL 389
           RK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQRGPIAPLSEEITDP+  YI +GV 
Sbjct: 458 RKISSRVSSLAIGLLGISALFNDVAFYWVVLIFFLQRGPIAPLSEEITDPESNYIGIGVA 517

Query: 390 VLFLGLLVCLPYPFPFSDQAVSNF 413
           +L  GLLVCLPYPFPF    +++ 
Sbjct: 518 ILLFGLLVCLPYPFPFDPSQLTDM 541

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187443|ref|NP_001190232.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003536|gb|AED90919.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/382 (81%), Positives = 348/382 (91%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P   P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEK
Sbjct: 134 PGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEK 193

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           I TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL
Sbjct: 194 IKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTL 253

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
            LRNVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FV
Sbjct: 254 FLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFV 313

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVD
Sbjct: 314 PSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVD 373

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IA
Sbjct: 374 ASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIA 433

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           F++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY+
Sbjct: 434 FSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYV 493

Query: 385 ALGVLVLFLGLLVCLPYPFPFS 406
           +LG+LVLFL LLVCLPYPF F+
Sbjct: 494 SLGILVLFLSLLVCLPYPFAFT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573279|ref|NP_974736.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana] gi|332003534|gb|AED90917.1| ethylene-dependent gravitropism-deficient and yellow-green-like 2 protein [Arabidopsis thaliana]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/382 (81%), Positives = 348/382 (91%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P   P QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEK
Sbjct: 137 PGVNPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEK 196

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           I TRM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL
Sbjct: 197 IKTRMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTL 256

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
            LRNVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FV
Sbjct: 257 FLRNVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFV 316

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRI+NIV+KREDLLKVAAAGPLAGFSLG +LFL+G   PPSDGIG+VVD
Sbjct: 317 PSWQIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVD 376

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHESFLAGG AKLLLGD LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IA
Sbjct: 377 ASVFHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIA 436

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           F++WGRK +TRLTG SI LLGLS+LFSDV FYWVVL+FFLQRGPIAPL+EEIT PDDKY+
Sbjct: 437 FSIWGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYV 496

Query: 385 ALGVLVLFLGLLVCLPYPFPFS 406
           +LG+LVLFL LLVCLPYPF F+
Sbjct: 497 SLGILVLFLSLLVCLPYPFAFT 518

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551482|ref|XP_003544103.1| PREDICTED: uncharacterized protein LOC100816506 [Glycine max]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 322/389 (82%), Positives = 364/389 (93%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P  +PQ+LDE I+IPKETI+ILK+QVFGFDTFFVT+Q+PYEGGVLFKGNLRGQAAK+Y+K
Sbjct: 132 PGVKPQKLDEAIKIPKETIEILKNQVFGFDTFFVTSQDPYEGGVLFKGNLRGQAAKSYDK 191

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           IS R+K+KFGD+YKLFLLVNPED+ PVAVVVPR TLQPETTAVPEWFAAG+FGLVTVFTL
Sbjct: 192 ISKRLKDKFGDEYKLFLLVNPEDNMPVAVVVPRTTLQPETTAVPEWFAAGSFGLVTVFTL 251

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
           LLRNVP+LQS+LLSTFDNLNLL +GLPGALVTAL++GVHELGH LAAK TGV+LGVPYFV
Sbjct: 252 LLRNVPSLQSDLLSTFDNLNLLKDGLPGALVTALILGVHELGHFLAAKDTGVKLGVPYFV 311

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRIRNIV  REDLLKVAAAGP+AG++LG +L L+GFI PPSDGIG+VVD
Sbjct: 312 PSWQIGSFGAITRIRNIVPNREDLLKVAAAGPIAGYALGLLLLLLGFILPPSDGIGVVVD 371

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHESFLAGG AKLLLG+VLK+GT IS+NPLVIWAWAGLLINAINSIPAGELDGGRI+
Sbjct: 372 ASVFHESFLAGGIAKLLLGNVLKEGTAISINPLVIWAWAGLLINAINSIPAGELDGGRIS 431

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           FALWGRKAS R TGVSI LLG+SSL +DV FYWVVL+FFLQRGPIAPLSEEITDP +KY+
Sbjct: 432 FALWGRKASLRFTGVSIALLGVSSLLNDVAFYWVVLIFFLQRGPIAPLSEEITDPGEKYV 491

Query: 385 ALGVLVLFLGLLVCLPYPFPFSDQAVSNF 413
           A+GV VL LGLLVCLPYPFPF+++ +++F
Sbjct: 492 AIGVTVLLLGLLVCLPYPFPFTEETLTSF 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486422|ref|XP_002271131.2| PREDICTED: uncharacterized protein LOC100267324 [Vitis vinifera] gi|297736633|emb|CBI25504.3| unnamed protein product [Vitis vinifera]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 327/389 (84%), Positives = 359/389 (92%)

Query: 25  PRCQPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEK 84
           P  +PQ LDE IRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRG+AAK+YEK
Sbjct: 155 PGVKPQVLDESIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGKAAKSYEK 214

Query: 85  ISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTL 144
           I+ RM+++FGD+YKLFLL+NPEDDKPVAVVVPR TLQPETTAVPEWFAAGAFGLVTVFTL
Sbjct: 215 ITIRMQDRFGDKYKLFLLINPEDDKPVAVVVPRNTLQPETTAVPEWFAAGAFGLVTVFTL 274

Query: 145 LLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFV 204
            LRNVPALQSNLLS FDNLNLL +GLPGALVTALV+G HE+ HIL A+STG++LGVPYFV
Sbjct: 275 FLRNVPALQSNLLSVFDNLNLLMDGLPGALVTALVLGTHEISHILVARSTGIKLGVPYFV 334

Query: 205 PSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVD 264
           PSWQIGSFGAITRI NIV  REDLLKVAAAGP+AGFSLG VL L+GF+ PPSDGIG+VVD
Sbjct: 335 PSWQIGSFGAITRILNIVPNREDLLKVAAAGPIAGFSLGLVLLLLGFLLPPSDGIGVVVD 394

Query: 265 ASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIA 324
           ASVFHES LAGG AKLLLGDVLK+GTPISVNPL+IWAWAGLLINAINSIPAGELDGGRI+
Sbjct: 395 ASVFHESLLAGGIAKLLLGDVLKEGTPISVNPLLIWAWAGLLINAINSIPAGELDGGRIS 454

Query: 325 FALWGRKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYI 384
           FA+WGRKAS R T  SI LLGLSSLF+DV FYWVVL+FFLQRGPIAPLSEEITDP+DKY+
Sbjct: 455 FAIWGRKASARFTAASIALLGLSSLFNDVAFYWVVLIFFLQRGPIAPLSEEITDPEDKYV 514

Query: 385 ALGVLVLFLGLLVCLPYPFPFSDQAVSNF 413
           ALGV+VL LGLLVCLPYPFPF+++   +F
Sbjct: 515 ALGVVVLLLGLLVCLPYPFPFTNEVTVSF 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115434462|ref|NP_001041989.1| Os01g0142100 [Oryza sativa Japonica Group] gi|113531520|dbj|BAF03903.1| Os01g0142100 [Oryza sativa Japonica Group] gi|222617713|gb|EEE53845.1| hypothetical protein OsJ_00322 [Oryza sativa Japonica Group]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/384 (77%), Positives = 348/384 (90%)

Query: 30  QQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRM 89
           QQLDE +RIPK TIDILKDQVFGFDTFFVT+QEPYEGG+LFKGNLRGQ AK+YEKI+ R+
Sbjct: 161 QQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEGGILFKGNLRGQPAKSYEKITNRL 220

Query: 90  KNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLRNV 149
           +NKFGDQYKLFLL+NPEDDKPVAVVVPR+TLQPETTAVPEWFAA +FG+VT+FTLLLRNV
Sbjct: 221 QNKFGDQYKLFLLINPEDDKPVAVVVPRQTLQPETTAVPEWFAAASFGVVTIFTLLLRNV 280

Query: 150 PALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQI 209
           P LQ NLLSTFDNL LL +G+ GALVTA +IGVHE+ HILAA+ TG++L VPYFVPSWQI
Sbjct: 281 PLLQDNLLSTFDNLELLKDGVYGALVTAAIIGVHEIAHILAARDTGIKLAVPYFVPSWQI 340

Query: 210 GSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFH 269
           GSFGAITRI NIV  REDLLKVAAAGPLAGFSLGFVL L+GFI PPSDG+G+V+D +VFH
Sbjct: 341 GSFGAITRIVNIVRNREDLLKVAAAGPLAGFSLGFVLLLLGFILPPSDGLGLVIDPAVFH 400

Query: 270 ESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG 329
           ESFL GG AKL+LGD LK+GT +S+NPLV+WAWAGLLINAINSIPAGELDGGRIAFA+WG
Sbjct: 401 ESFLVGGLAKLILGDALKEGTKLSINPLVLWAWAGLLINAINSIPAGELDGGRIAFAMWG 460

Query: 330 RKASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIALGVL 389
           RK S+R++ ++I LLG+S+LF+DV FYWVVL+FFLQRGPI+PLSEEIT+P++ YI++GV 
Sbjct: 461 RKISSRISSLAIGLLGISALFNDVAFYWVVLIFFLQRGPISPLSEEITEPENNYISIGVA 520

Query: 390 VLFLGLLVCLPYPFPFSDQAVSNF 413
           +L  GLLVCLPYPFPF    +++F
Sbjct: 521 ILLFGLLVCLPYPFPFDPSQLTDF 544

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
TAIR|locus:2166389	556	EGY2 "ethylene-dependent gravi	0.917	0.681	0.707	5.3e-143
TAIR|locus:2182372	548	EGY1 "ETHYLENE-DEPENDENT GRAVI	0.525	0.395	0.290	8.1e-30
TAIR|locus:2030938	573	EGY3 "ETHYLENE-DEPENDENT GRAVI	0.820	0.591	0.239	4.5e-16

TAIR|locus:2166389 EGY2 "ethylene-dependent gravitropism-deficient and yellow-green-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
 Identities = 268/379 (70%), Positives = 301/379 (79%)

Query:    28 QPQQLDEYIRIPKETIDILKDQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKIST 87
             QP QLD+ +R+PKETIDIL+ QVFGFDTFFVT+QEPYEGGVLFKGNLRG+ A +YEKI T
Sbjct:   169 QPLQLDDSMRLPKETIDILRGQVFGFDTFFVTSQEPYEGGVLFKGNLRGKPATSYEKIKT 228

Query:    88 RMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVPEWFAAGAFGLVTVFTLLLR 147
             RM+N FGDQYKLFLL NPEDDKPVAVVVPR++L+PETTAVPEWFAAG+FGLV +FTL LR
Sbjct:   229 RMENNFGDQYKLFLLTNPEDDKPVAVVVPRRSLEPETTAVPEWFAAGSFGLVALFTLFLR 288

Query:   148 NVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSW 207
             NVPALQS+LLS FDNL LL +GLPGALVTALV+GVHELGHIL A S G++LGVP+FVPSW
Sbjct:   289 NVPALQSDLLSAFDNLELLKDGLPGALVTALVLGVHELGHILVANSLGIKLGVPFFVPSW 348

Query:   208 QIGSFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIGIVVDASV 267
             QIGSFGAITRI+NIV+KREDLLKVAAAGPLA               PPSDGIG+VVDASV
Sbjct:   349 QIGSFGAITRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLFVPPSDGIGVVVDASV 408

Query:   268 FHESXXXXXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL 327
             FHES            D LK+GT IS+NPLVIWAWAGLLIN INSIPAGELDGG+IAF++
Sbjct:   409 FHESFLAGGIAKLLLGDALKEGTSISLNPLVIWAWAGLLINGINSIPAGELDGGKIAFSI 468

Query:   328 WGRKASTRLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITDPDDKYIAXX 387
             WGRK +TRLT              DV FYWVVL+FFLQRGPIAPL+EEIT PDDKY++  
Sbjct:   469 WGRKTATRLTGASIALLGLSALFSDVAFYWVVLIFFLQRGPIAPLAEEITVPDDKYVSLG 528

Query:   388 XXXXXXXXXXXXPYPFPFS 406
                         PYPF F+
Sbjct:   529 ILVLFLSLLVCLPYPFAFT 547

GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2182372 EGY1 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
 Identities = 65/224 (29%), Positives = 96/224 (42%)

Query:   162 NLNLLTNGLPGALVTAL-VIGV---HELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR 217
             ++ LL   +  AL  A  V+G+   HELGH LAA    V+L +PYF+P+  +GSFGAIT+
Sbjct:   286 DMELLYPFVDAALPLAYGVLGILLFHELGHFLAAVPKKVKLSIPYFIPNITLGSFGAITQ 345

Query:   218 IRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXX--XXPPSDGIGIV-VDASVFHESXXX 274
              ++I+  R   + ++ AGP A                  P     +V V + +F  S   
Sbjct:   346 FKSILPDRSTKVDISLAGPFAGAALSVSMFAVGLFLSTEPDAANDLVQVPSMLFQGSLLL 405

Query:   275 XXXXXXXXXDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKAST 334
                              +S++PLVI  W GL   A N +P G LDGGR     +G+ A  
Sbjct:   406 GLISRATLGYAALHAATVSIHPLVIAGWCGLTTTAFNMLPVGCLDGGRAVQGAFGKNALV 465

Query:   335 RLTXXXXXXXXXXXXXXDVTFYWVVLVFFLQRGPIAPLSEEITD 378
                               +   W + V   QR P  P   ++T+
Sbjct:   466 TFGLSTYVMLGLRVLGGPLALPWGLYVLICQRTPEKPCLNDVTE 509

GO:0004222 "metalloendopeptidase activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009959 "negative gravitropism" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=IMP

GO:0048564 "photosystem I assembly" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0043157 "response to cation stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

TAIR|locus:2030938 EGY3 "ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 88/368 (23%), Positives = 152/368 (41%)

Query:    41 ETIDILK-DQVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKL 99
             + +D+ K    FGFDTFF T+   +  G +F GNLR    +   K+  ++    G    +
Sbjct:   176 KALDLNKLKSCFGFDTFFATDVRRFGDGGIFIGNLRKPIDEVTPKLEAKLSEAAGRDVVV 235

Query:   100 FLLVNPEDD--KPVAVVVPRKT--LQPETTAVPE-WFAAGAFGL-VTVF-TLLLRNVPAL 152
             + +    ++  K V +V P+    LQ E+T +   W    A  L VT F T+ L +   L
Sbjct:   236 WFMEERSNEITKQVCMVQPKAEIDLQFESTRLSTPWGYVSAIALCVTTFGTIALMSGFFL 295

Query:   153 QSNLLSTFDNLNLLTNGLP--GALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIG 210
             + +  +TFD+   + N +P  G  ++  ++GV E+   + A   GV+L   + VPS   G
Sbjct:   296 KPD--ATFDDY--IANVVPLFGGFLS--ILGVSEIATRVTAARHGVKLSPSFLVPSNWTG 349

Query:   211 SFGAITRIRNIVSKREDLLKVAAAGPLAXXXXXXXXXXXXXXXPPSDGIG---IVVDASV 267
               G +    +++  ++ L  +  A   +                 S   G   + +    
Sbjct:   350 CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLLLAAAAFISDGSFNGGDNALYIRPQF 409

Query:   268 FHESXXXXXXX------XXXXXDVLK---DGTPISVNPLVIWAWAGLLINAINSIPAGEL 318
             F  +                  +VL    +G  + V+PL      G+++ ++N +P G L
Sbjct:   410 FDNNPLLSFVQFVVGPYADDLGNVLPNAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRL 469

Query:   319 DGGRIAFALWGRKASTRLTXXXXXXXXXXXXXXDVT-FYWVVLVFFLQRGPIAPLSEEIT 377
             +GGRIA A++GR  +  L+               V    W +   F + G   P  +EIT
Sbjct:   470 EGGRIAQAMFGRSTAAILSFTTSLLLGIGGLSGSVLCLAWGLFATFFRGGEETPAKDEIT 529

Query:   378 DPDDKYIA 385
                D   A
Sbjct:   530 PVGDDRFA 537


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      413       358   0.00081  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  219 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.77u 0.16s 24.93t   Elapsed:  00:00:01
  Total cpu time:  24.77u 0.16s 24.93t   Elapsed:  00:00:01
  Start:  Fri May 10 04:14:31 2013   End:  Fri May 10 04:14:32 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.85	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	413
cd06160	183	cd06160, S2P-M50_like_2, Uncharacterized homologs	1e-29
pfam02163	206	pfam02163, Peptidase_M50, Peptidase family M50	8e-15
cd05709	180	cd05709, S2P-M50, Site-2 protease (S2P) class of z	1e-12
cd06161	208	cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease	3e-12
cd06164	227	cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 prote	1e-08
COG0750	375	COG0750, COG0750, Predicted membrane-associated Zn	0.002

>gnl|CDD|100081 cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score =  113 bits (284), Expect = 1e-29
 Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 51/231 (22%)

Query: 135 AFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKST 194
              ++T+ T LL        +      N  LL  GLP AL    ++G+HE+GH LAA+  
Sbjct: 2   LLLVLTLLTTLL---VGAWLSGNDVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRH 58

Query: 195 GVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFP 254
           GV+  +PYF+P   IG+FGA  R+R+ +  R+ L  +A AGPLAG  L   + ++G    
Sbjct: 59  GVKASLPYFIPFPFIGTFGAFIRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---- 114

Query: 255 PSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP 314
                                                     L +  W GLL+ A+N +P
Sbjct: 115 ------------------------------------------LAVAGWVGLLVTALNLLP 132

Query: 315 AGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFF 363
            G+LDGG I  AL+GR+ +  +    +V LGL +L+   +    W +L+  
Sbjct: 133 VGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLLLI 183

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains. Length = 183

>gnl|CDD|216910 pfam02163, Peptidase_M50, Peptidase family M50

 Score = 72.5 bits (178), Expect = 8e-15
 Identities = 49/209 (23%), Positives = 68/209 (32%), Gaps = 30/209 (14%)

Query: 171 PGALVTALVIGVHELGHILAAKSTGVE-----------------LGVPYFVPSWQIGSFG 213
              L   + + VHELGH L A+  GV+                     Y +      +FG
Sbjct: 1   AFILALLISVVVHELGHALVARRFGVKVERFAIGFGPLLFKHLDGATEYTIRLMFGWAFG 60

Query: 214 AITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 273
           A    R         L ++ AGPLA F L  +LF +  + P        V   V   S  
Sbjct: 61  APIERRFKKKSPWQRLLISLAGPLANFILALLLFALLLLLPG--IPVPPVIGGVVVGSSK 118

Query: 274 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---- 329
             G   +             V  L   A   L +   N +P   LDGG I  +L      
Sbjct: 119 LSGPVAIAKV-GSTSALSGLVALLAFLALLNLNLGLFNLLPIPPLDGGHILRSLLAVRGR 177

Query: 330 ------RKASTRLTGVSIVLLGLSSLFSD 352
                       +    ++LL L  LF+D
Sbjct: 178 PLNERAENYIYLVGLALLLLLILLLLFND 206

Length = 206

>gnl|CDD|100078 cd05709, S2P-M50, Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 47/200 (23%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 170 LPGALVTALVIGVHELGHILAAKSTG--VELGVPYFVPSWQIGS---------FGAITRI 218
           L   L   + + VHELGH L A+  G  V      F  +               G   + 
Sbjct: 1   LAFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKP 60

Query: 219 -----RNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFL 273
                R     R   L VA AGPLA   L  +L L+  +        +   AS    + L
Sbjct: 61  VGENPRAFKKPRWQRLLVALAGPLANLLLALLLLLLLLLLGGLPPAPVGQAASSGLANLL 120

Query: 274 AGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWG---R 330
           A                          A   L +   N +P   LDGGRI  AL      
Sbjct: 121 AFL------------------------ALINLNLAVFNLLPIPPLDGGRILRALLEAIRG 156

Query: 331 KASTRLTGVSIVLLGLSSLF 350
           +   RL      +L    L 
Sbjct: 157 RVEERLEAYGFAILLGLLLL 176

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-binding proteins (SREBPs) from membranes of the ER. These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD superfamily. Prokaryotic S2P/M50 homologs have been shown to regulate stress responses, sporulation, cell division, and cell differentiation. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses, and in Bacillus subtilis, the S2P homolog SpoIVFB is involved in the pro-sigmaK pathway of spore formation. Some of the subfamilies within this hierarchy contain one or two PDZ domain insertions, with putative regulatory roles, such as the inhibition of substrate cleavage as seen by the RseP PDZ domain. Length = 180

>gnl|CDD|100082 cd06161, S2P-M50_SpoIVFB, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 64.9 bits (159), Expect = 3e-12
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 51/207 (24%)

Query: 169 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 228
           GL  AL+  L + +HELGH L A+  G+       V S  +  FG +  +       ++ 
Sbjct: 30  GLLEALLLFLSVLLHELGHALVARRYGIR------VRSITLLPFGGVAELEEEPETPKEE 83

Query: 229 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 288
             +A AGPL    L  + +L+  + P                        + L       
Sbjct: 84  FVIALAGPLVSLLLAGLFYLLYLLLPGGG---------------PLSSLLEFL------- 121

Query: 289 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRKASTR-------LT 337
                       A   L++   N +PA  LDGGR+  AL     G + +TR       L 
Sbjct: 122 ------------AQVNLILGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLF 169

Query: 338 GVSIVLLGLSSLFSDVTFYWVVLVFFL 364
            + +V+LGL  LF  +   W++L+   
Sbjct: 170 AILLVVLGLFLLFLGLGNLWLLLIALF 196

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. Length = 208

>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 52/213 (24%)

Query: 169 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDL 228
           GL  AL+    + +HELGH L A+  G+       V S  +  FG + R+          
Sbjct: 45  GLAAALLLFASVLLHELGHSLVARRYGIP------VRSITLFLFGGVARLEREPETPGQE 98

Query: 229 LKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKD 288
             +A AGPL    L  +  L+    P S              +   G     L       
Sbjct: 99  FVIAIAGPLVSLVLALLFLLLSLALPGSG-------------AGPLGVLLGYL------- 138

Query: 289 GTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFA-LWGRKAST-----------RL 336
                       A   LL+   N +PA  LDGGR+  A LW R               R 
Sbjct: 139 ------------ALINLLLAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGRG 186

Query: 337 TGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 367
             V +++LGL SLF ++    + +++ +FL  G
Sbjct: 187 FAVLLIILGLLSLFLNLLGGLWLILIAWFLYIG 219

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 227

>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 38/211 (18%), Positives = 61/211 (28%), Gaps = 20/211 (9%)

Query: 169 GLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITR-------IRNI 221
           G    L+T LVI +    H +AA+        P  +P  + G                  
Sbjct: 176 GDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPVVIPL-KPGDKIVAVDVGAIGLSPNGE 234

Query: 222 VSKREDLLKVAAAGPLAGFSLGF--VLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAK 279
               + L+K    GPL    L       LV         + I  D S+     L+G    
Sbjct: 235 PDVGKVLVKY---GPLEAVGLAVEKTGRLVKLTLKMLKKL-ITGDLSL---KNLSGPIGI 287

Query: 280 LLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGV 339
             +         I  N L   A   + +  +N +P   LDGG + F L       +    
Sbjct: 288 AKIAGAAASLGLI--NLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEAL-RGKPLSE 344

Query: 340 SIVLLGLSSLFSDVTFYWVVLVFFLQRGPIA 370
            +         + +    ++  F        
Sbjct: 345 RVEAALYRIGLALLLLLMLLATFNDLLRLFR 375

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
cd06160	183	S2P-M50_like_2 Uncharacterized homologs of Site-2	99.98
cd06164	227	S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P),	99.93
cd06161	208	S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a z	99.9
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	99.85
cd05709	180	S2P-M50 Site-2 protease (S2P) class of zinc metall	99.83
cd06159	263	S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs	99.8
cd06158	181	S2P-M50_like_1 Uncharacterized homologs of Site-2	99.78
PF02163	192	Peptidase_M50: Peptidase family M50; InterPro: IPR	99.77
cd06162	277	S2P-M50_PDZ_SREBP Sterol regulatory element-bindin	99.74
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.48
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.47
COG1994	230	SpoIVFB Zn-dependent proteases [General function p	99.28
COG0750	375	Predicted membrane-associated Zn-dependent proteas	98.86
PF13398	200	Peptidase_M50B: Peptidase M50B-like	97.26
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	96.11
COG0750	375	Predicted membrane-associated Zn-dependent proteas	95.89

>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.98  E-value=2.6e-31  Score=246.69  Aligned_cols=177  Identities=40%  Similarity=0.725  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHhhcccccchhhhhhccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeE
Q 015105          136 FGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI  215 (413)
Q Consensus       136 ~~l~t~~t~~~~~~~~l~~~~~~~~~~~~~~~~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGav  215 (413)
                      ++++|+.+....+. ..+.+  +..++.+.+..+++++++++.++.+||+||+++||++|+|++.++++|..++|++|++
T Consensus         3 ~~~~s~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~l~l~~~l~iHElgH~~~A~~~G~~~~~~~l~P~~~~G~~G~~   79 (183)
T cd06160           3 LLVLTLLTTLLVGA-WLSGN--DVPGNPLLLLQGLPFALALLAILGIHEMGHYLAARRHGVKASLPYFIPFPFIGTFGAF   79 (183)
T ss_pred             HHHHHHHHHHHHHH-HHhcc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccceeeeehHhcCcEEEE
Confidence            45667777665543 22222  3347788899999999999999999999999999999999999999998889999999


Q ss_pred             EEccccccCccceeEEEecchhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccch
Q 015105          216 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVN  295 (413)
Q Consensus       216 i~~~~~~~~r~~lf~IaiAGPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~  295 (413)
                      ++.++..++|+++++|++|||++|+++++++++++                                             
T Consensus        80 ~~~~~~~~~~~~~~~IalAGPl~nl~lali~~~~~---------------------------------------------  114 (183)
T cd06160          80 IRMRSPIPNRKALFDIALAGPLAGLLLALPVLIIG---------------------------------------------  114 (183)
T ss_pred             EEecCCCCChhHhehhhhhHHHHHHHHHHHHHHHH---------------------------------------------
Confidence            99999888999999999999999999988775543                                             


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH
Q 015105          296 PLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSD--VTFYWVVLV  361 (413)
Q Consensus       296 pl~~ag~~gl~ltafNLLPigpLDGGrIl~allg~r~~~~~~~~~~~llgl~~l~~~--~~l~W~ili  361 (413)
                       +..++|+|+++++|||+|++||||||++|+++++|.+.+.++.+.+++|+.++.++  .++.|..++
T Consensus       115 -~~~~~~~nl~l~~fNLLPi~PLDGGril~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  181 (183)
T cd06160         115 -LAVAGWVGLLVTALNLLPVGQLDGGHIVRALFGRRVAALIGIGLLVALGLLALYLSFSIWLLWALLL  181 (183)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCcChHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             12468999999999999999999999999999999999999998888888887765  455555443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.

>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.93  E-value=1.2e-24  Score=208.37  Aligned_cols=134  Identities=30%  Similarity=0.390  Sum_probs=111.6

Q ss_pred             cchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEccccccCccceeEEEecchhHHH
Q 015105          161 DNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGF  240 (413)
Q Consensus       161 ~~~~~~~~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~~~r~~lf~IaiAGPlag~  240 (413)
                      .+...+..|+.++++++.++++||+||+++||++|+|++      .+.+.+||+++++++..+++++++.|++|||++|+
T Consensus        37 ~~~~~~~~g~~~~~~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~~IalAGPl~Nl  110 (227)
T cd06164          37 LGAVAWLLGLAAALLLFASVLLHELGHSLVARRYGIPVR------SITLFLFGGVARLEREPETPGQEFVIAIAGPLVSL  110 (227)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEC------eEEEEeeeEEEEecCCCCCHHHHhhhhhhHHHHHH
Confidence            455667889999999999999999999999999999996      67788899999999988889999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCch
Q 015105          241 SLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDG  320 (413)
Q Consensus       241 lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDG  320 (413)
                      +++++++.+....+...            ++.                    ....+.+.+|+|+++++|||+|++||||
T Consensus       111 lla~i~~~l~~~~~~~~------------~~~--------------------~~~~~~~~~~~Nl~l~~fNLlP~~PLDG  158 (227)
T cd06164         111 VLALLFLLLSLALPGSG------------AGP--------------------LGVLLGYLALINLLLAVFNLLPAFPLDG  158 (227)
T ss_pred             HHHHHHHHHHHHhcccc------------chH--------------------HHHHHHHHHHHHHHHHHHhCcCCCCCCh
Confidence            99998877665432110            000                    0122457799999999999999999999


Q ss_pred             HHHHHHhhhhHH
Q 015105          321 GRIAFALWGRKA  332 (413)
Q Consensus       321 GrIl~allg~r~  332 (413)
                      ||++++++.++.
T Consensus       159 gril~~ll~~~~  170 (227)
T cd06164         159 GRVLRALLWRRT  170 (227)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987665

In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha

>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation

Probab=99.90  E-value=6.7e-23  Score=193.57  Aligned_cols=129  Identities=29%  Similarity=0.433  Sum_probs=107.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEccccccCccceeEEEecchhHHHHHH
Q 015105          164 NLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLG  243 (413)
Q Consensus       164 ~~~~~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~~~r~~lf~IaiAGPlag~lva  243 (413)
                      ..+..++.+++.++.++++||+||+++||++|+|++      .+.+.+||+.+++++...+|++++.|++|||++|++++
T Consensus        25 ~~~~~~~~~~l~l~~~v~iHElgH~~~A~~~G~~v~------~i~l~p~Gg~~~~~~~~~~~~~~~lIalAGPl~n~~la   98 (208)
T cd06161          25 VAWLLGLLEALLLFLSVLLHELGHALVARRYGIRVR------SITLLPFGGVAELEEEPETPKEEFVIALAGPLVSLLLA   98 (208)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc------ceEEEeeeeeeeeccCCCChhHheeeeeehHHHHHHHH
Confidence            456788999999999999999999999999999985      67888899999998877788999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHH
Q 015105          244 FVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRI  323 (413)
Q Consensus       244 l~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDGGrI  323 (413)
                      +++..+....+..              +                    ...+.+...+++|+.+++|||+|++|||||||
T Consensus        99 ~~~~~l~~~~~~~--------------~--------------------~~~~~~~~~~~~N~~l~lfNLlPi~pLDGg~i  144 (208)
T cd06161          99 GLFYLLYLLLPGG--------------G--------------------PLSSLLEFLAQVNLILGLFNLLPALPLDGGRV  144 (208)
T ss_pred             HHHHHHHHHcccc--------------h--------------------HHHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            8887655432110              0                    01123457789999999999999999999999


Q ss_pred             HHHhhhhHH
Q 015105          324 AFALWGRKA  332 (413)
Q Consensus       324 l~allg~r~  332 (413)
                      +++++.++.
T Consensus       145 l~~ll~~~~  153 (208)
T cd06161         145 LRALLWRRT  153 (208)
T ss_pred             HHHHHHHhc
Confidence            999977664

SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.85  E-value=1.6e-20  Score=174.50  Aligned_cols=113  Identities=34%  Similarity=0.429  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccC--cccccc------------ceeeeeeeEEEcccccc-------------
Q 015105          171 PGALVTALVIGVHELGHILAAKSTGVELGV--PYFVPS------------WQIGSFGAITRIRNIVS-------------  223 (413)
Q Consensus       171 ~~al~l~~iL~iHElGH~laAr~~Gv~~~~--P~fiP~------------~~Lg~fGavi~~~~~~~-------------  223 (413)
                      .+.+++..++++||+||+++||++|+|+..  .-|-|.            +.+-++|+++++++..+             
T Consensus         3 ~~~i~l~~~v~iHElGH~~~Ar~~Gv~v~~f~iGfGp~l~~~~~~~t~~~i~~iPlGGyv~~~~~~~~~~~~~~~~~~~f   82 (182)
T cd06163           3 AFILVLGILIFVHELGHFLVAKLFGVKVEEFSIGFGPKLFSFKKGETEYSISAIPLGGYVKMLGEDPEEEADPEDDPRSF   82 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeeeecCceeeeeecCCeEEEEEEEEeccEEEecCCCcccccccccchHHH
Confidence            356678889999999999999999999863  111121            34678999999865321             


Q ss_pred             ---CccceeEEEecchhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHH
Q 015105          224 ---KREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIW  300 (413)
Q Consensus       224 ---~r~~lf~IaiAGPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~a  300 (413)
                         ++++++.|++|||++|+++|++++.+.                                              +.+.
T Consensus        83 ~~~~~~~ri~V~lAGP~~NlilA~i~~~~~----------------------------------------------~~~~  116 (182)
T cd06163          83 NSKPVWQRILIVFAGPLANFLLAIVLFAVL----------------------------------------------LSFL  116 (182)
T ss_pred             ccCCcchhhhhhhhHHHHHHHHHHHHHHHH----------------------------------------------HHHH
Confidence               467889999999999999998764321                                              2256


Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHhhh
Q 015105          301 AWAGLLINAINSIPAGELDGGRIAFALWG  329 (413)
Q Consensus       301 g~~gl~ltafNLLPigpLDGGrIl~allg  329 (413)
                      .++|+.+++|||+|++||||||++++++.
T Consensus       117 ~~~n~~l~~fNLlPippLDGg~il~~~~~  145 (182)
T cd06163         117 ALLSINLGILNLLPIPALDGGHLLFLLIE  145 (182)
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            78999999999999999999999999875

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.83  E-value=2.9e-20  Score=170.60  Aligned_cols=139  Identities=28%  Similarity=0.307  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccC----cccccc-------ceeeeeeeEEEcccccc-----CccceeEEEec
Q 015105          171 PGALVTALVIGVHELGHILAAKSTGVELGV----PYFVPS-------WQIGSFGAITRIRNIVS-----KREDLLKVAAA  234 (413)
Q Consensus       171 ~~al~l~~iL~iHElGH~laAr~~Gv~~~~----P~fiP~-------~~Lg~fGavi~~~~~~~-----~r~~lf~IaiA  234 (413)
                      .+.++++.++.+||+||+++||++|+|+..    ..+.|.       +.+-++|++++.++...     +|++++.|++|
T Consensus         2 ~~~~~~~i~i~iHE~gH~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ip~gG~~~~~~~~~~~~~~~~~~~~~i~la   81 (180)
T cd05709           2 AFILALLISVTVHELGHALVARRLGVKVARFSGGFTLNPLKHGDPYGIILIPLGGYAKPVGENPRAFKKPRWQRLLVALA   81 (180)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCchheeeeEEECCcCCCCEehHHHHhccCeeccCCCChhhhccchhhhhhhhhh
Confidence            356778889999999999999999998742    122221       22345799999877654     48899999999


Q ss_pred             chhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcC
Q 015105          235 GPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIP  314 (413)
Q Consensus       235 GPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLP  314 (413)
                      ||++|+++++++..+....+.....    ......                    +....+.+.+.+++|+.++++||+|
T Consensus        82 GPl~nllla~i~~~~~~~~~~~~~~----~~~~~~--------------------~~~~~~~l~~~~~~n~~l~~fNLlP  137 (180)
T cd05709          82 GPLANLLLALLLLLLLLLLGGLPPA----PVGQAA--------------------SSGLANLLAFLALINLNLAVFNLLP  137 (180)
T ss_pred             hHHHHHHHHHHHHHHHHHHccCCcc----chhhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999988776543321100    000000                    0011245678899999999999999


Q ss_pred             CCCCchHHHHHHhhhhHHH
Q 015105          315 AGELDGGRIAFALWGRKAS  333 (413)
Q Consensus       315 igpLDGGrIl~allg~r~~  333 (413)
                      ++||||||++++++.++..
T Consensus       138 i~plDGg~il~~~l~~~~~  156 (180)
T cd05709         138 IPPLDGGRILRALLEAIRG  156 (180)
T ss_pred             CCCCChHHHHHHHHhHHHH
Confidence            9999999999999887764

Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin

>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.80  E-value=1.9e-18  Score=168.91  Aligned_cols=120  Identities=26%  Similarity=0.319  Sum_probs=94.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEccccc---cCccceeEEEecchhHHHHH
Q 015105          166 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIV---SKREDLLKVAAAGPLAGFSL  242 (413)
Q Consensus       166 ~~~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~---~~r~~lf~IaiAGPlag~lv  242 (413)
                      ....+.+.+++..++.+||+||+++||++|+++..-.+  ...+.++|++++.++..   .++++++.|++|||++|+++
T Consensus       107 ~i~~~~~~iaL~isv~iHElgHa~~Ar~~G~~V~~iGl--~l~~ip~Gg~v~~~~~~~~~~~~~~~~~Ia~AGP~~Nlvl  184 (263)
T cd06159         107 FIPLPYGIIALVVGVVVHELSHGILARVEGIKVKSGGL--LLLIIPPGAFVEPDEEELNKADRRIRLRIFAAGVTANFVV  184 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECchhH--HHHhhhcEEEEEecchhhccCChhheeeeeeehHHHHHHH
Confidence            34566677788899999999999999999999974221  01123589999887654   56789999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHH
Q 015105          243 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  322 (413)
Q Consensus       243 al~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDGGr  322 (413)
                      |++++++..                                             +.+..|+|+.+++|||+|++||||||
T Consensus       185 a~i~~~l~~---------------------------------------------l~~~~~~N~~l~lFNLlP~~PLDGg~  219 (263)
T cd06159         185 ALIAFALFF---------------------------------------------LYWIFWINFLLGLFNCLPAIPLDGGH  219 (263)
T ss_pred             HHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHhCCCCCCCChHH
Confidence            987754321                                             22557899999999999999999999


Q ss_pred             HHHHhhhhHH
Q 015105          323 IAFALWGRKA  332 (413)
Q Consensus       323 Il~allg~r~  332 (413)
                      ++++++..+.
T Consensus       220 il~~ll~~~~  229 (263)
T cd06159         220 VFRDLLEALL  229 (263)
T ss_pred             HHHHHHHHHh
Confidence            9999865443

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.

>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=99.78  E-value=6.3e-19  Score=163.50  Aligned_cols=135  Identities=27%  Similarity=0.370  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccc----Cccccccceeeeee------------eEE-----EccccccCccceeE
Q 015105          172 GALVTALVIGVHELGHILAAKSTGVELG----VPYFVPSWQIGSFG------------AIT-----RIRNIVSKREDLLK  230 (413)
Q Consensus       172 ~al~l~~iL~iHElGH~laAr~~Gv~~~----~P~fiP~~~Lg~fG------------avi-----~~~~~~~~r~~lf~  230 (413)
                      ..++++.++..||+||+++|+++|+++.    +.+++|.-+++++|            +..     +.++..++|++++.
T Consensus         4 ~~~~~~~~i~~HE~aHa~~A~~~Gd~t~~~~Grltlnp~~hid~~g~l~~~~~~~~~~G~a~p~~~~~~~~~~~r~~~~~   83 (181)
T cd06158           4 VIIAVLLAITLHEFAHAYVAYRLGDPTARRAGRLTLNPLAHIDPIGTIILPLLLPFLFGWAKPVPVNPRNFKNPRRGMLL   83 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCceecCcHHhcCcchHHHHHHHHHhCeEEecccccChHhhcccHhhHhh
Confidence            4556788999999999999999999985    45666744433332            121     12223456688999


Q ss_pred             EEecchhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHH
Q 015105          231 VAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAI  310 (413)
Q Consensus       231 IaiAGPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltaf  310 (413)
                      |++|||++|+++++++...........+         ...+.+                    ...+....++|+.+++|
T Consensus        84 valAGP~~n~~la~i~~~~~~~~~~~~~---------~~~~~l--------------------~~~~~~~~~~Ni~l~lf  134 (181)
T cd06158          84 VSLAGPLSNLLLALLFALLLRLLPAFGG---------VVASFL--------------------FLMLAYGVLINLVLAVF  134 (181)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccccc---------hhhHHH--------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999887655433221100         001111                    11234567899999999


Q ss_pred             hhcCCCCCchHHHHHHhhhhHHHHH
Q 015105          311 NSIPAGELDGGRIAFALWGRKASTR  335 (413)
Q Consensus       311 NLLPigpLDGGrIl~allg~r~~~~  335 (413)
                      ||+|++||||||++++++++|....
T Consensus       135 NLlPipPLDG~~il~~~l~~~~~~~  159 (181)
T cd06158         135 NLLPIPPLDGSKILAALLPRRLAEA  159 (181)
T ss_pred             HhCCCCCCChHHHHHHHcchhHHHH
Confidence            9999999999999999998876643

Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.

>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.77  E-value=1.1e-18  Score=161.11  Aligned_cols=127  Identities=29%  Similarity=0.377  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcccCcc--c--ccc----------ceeeeeeeE---------------EEccccc
Q 015105          172 GALVTALVIGVHELGHILAAKSTGVELGVPY--F--VPS----------WQIGSFGAI---------------TRIRNIV  222 (413)
Q Consensus       172 ~al~l~~iL~iHElGH~laAr~~Gv~~~~P~--f--iP~----------~~Lg~fGav---------------i~~~~~~  222 (413)
                      +.+++..++.+||+||+++|+++|+|+....  +  .+.          +..-++|++               .+.+...
T Consensus         2 ~~~~~~i~i~~HE~gH~~~a~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~   81 (192)
T PF02163_consen    2 FILALLISIVLHELGHALAARLYGDKVPRFEGGFGLNIFSHRDGFTIWSIRLIPLGGYVGGFGWSNVNPFPAPISESFRK   81 (192)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHTTT--B--EEE------------------------------------------------
T ss_pred             CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            4567888999999999999999999996541  1  111          011123332               2223335


Q ss_pred             cCccceeEEEecchhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHH
Q 015105          223 SKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAW  302 (413)
Q Consensus       223 ~~r~~lf~IaiAGPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~  302 (413)
                      .+|++.+.+++|||++|++++++++.+.........                              .+....+.+.++++
T Consensus        82 ~~~~~~~~i~laGp~~nllla~i~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~  131 (192)
T PF02163_consen   82 RSRWKRILIALAGPLANLLLAIIALLLLYLLSGSVG------------------------------WSSFFAEFLFFFAW  131 (192)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHTTS-------------------------------------EETTEEHHHHHHH
T ss_pred             CCccceEEEEEEcHHHHHHHHHHHHHHHHHHhcccc------------------------------ccHHHHHHHHHHHH
Confidence            567889999999999999999888776543221100                              01123356778999


Q ss_pred             HHHHHHHHhhcCCCCCchHHHHHHhh
Q 015105          303 AGLLINAINSIPAGELDGGRIAFALW  328 (413)
Q Consensus       303 ~gl~ltafNLLPigpLDGGrIl~all  328 (413)
                      +|+.++++||+|++||||||++++++
T Consensus       132 ~n~~l~~~NllPi~~lDG~~il~~l~  157 (192)
T PF02163_consen  132 LNFILALFNLLPIPPLDGGRILRALL  157 (192)
T ss_dssp             HHHHHHHHTTSSSSSSHHHHHHHHHH
T ss_pred             HHHHHhhhhcccCCcCCHHHHHHHHH
Confidence            99999999999999999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.

>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism

Probab=99.74  E-value=2.8e-17  Score=161.41  Aligned_cols=116  Identities=24%  Similarity=0.209  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeee----eeEEEcccc---ccCccceeEEEecchhHHHHH
Q 015105          170 LPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSF----GAITRIRNI---VSKREDLLKVAAAGPLAGFSL  242 (413)
Q Consensus       170 l~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~f----Gavi~~~~~---~~~r~~lf~IaiAGPlag~lv  242 (413)
                      ..+.++++.++.+||+||+++|+++|+++.      ++.+..+    |++++.++.   ..++++++.|+.|||++|+++
T Consensus       128 ~~~l~al~isvvvHElgHal~A~~~gi~V~------~iGl~l~~~~pGa~ve~~~e~~~~~~~~~~l~Ia~AGp~~NlvL  201 (277)
T cd06162         128 GYYFTALLISGVVHEMGHGVAAVREQVRVN------GFGIFFFIIYPGAYVDLFTDHLNLISPVQQLRIFCAGVWHNFVL  201 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCeec------eEEEeeeeccCeeEEeecccccccCChhhhhheehhhHHHHHHH
Confidence            334567888999999999999999999996      4444444    999998543   345677899999999999999


Q ss_pred             HHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHH
Q 015105          243 GFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGR  322 (413)
Q Consensus       243 al~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDGGr  322 (413)
                      |++++++.+                 .                         .-+.+.+++|+.+.++||+|++||||||
T Consensus       202 a~i~~~l~~-----------------~-------------------------~~l~~la~iNl~lavfNLlP~~pLDGg~  239 (277)
T cd06162         202 GLVGYLLLI-----------------E-------------------------TFLKYLISLSGALAVINAVPCFALDGQW  239 (277)
T ss_pred             HHHHHHHHH-----------------H-------------------------HHHHHHHHHHHHHHHhhcCCCCCCChHH
Confidence            987765320                 0                         0133567899999999999999999999


Q ss_pred             HHHHhhhhHHH
Q 015105          323 IAFALWGRKAS  333 (413)
Q Consensus       323 Il~allg~r~~  333 (413)
                      ++++++.++..
T Consensus       240 il~~ll~~~~~  250 (277)
T cd06162         240 ILSTFLEATLV  250 (277)
T ss_pred             HHHHHHHHHhC
Confidence            99998765544

In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.

>TIGR00054 RIP metalloprotease RseP

Probab=99.48  E-value=4e-13  Score=139.40  Aligned_cols=81  Identities=27%  Similarity=0.420  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccC--ccccc------------cceeeeeeeEEEcccc----c----------
Q 015105          171 PGALVTALVIGVHELGHILAAKSTGVELGV--PYFVP------------SWQIGSFGAITRIRNI----V----------  222 (413)
Q Consensus       171 ~~al~l~~iL~iHElGH~laAr~~Gv~~~~--P~fiP------------~~~Lg~fGavi~~~~~----~----------  222 (413)
                      .+.+.+.+++++||+||+++||++|+|+..  -.|=|            .+.+-|+|+++++...    .          
T Consensus         8 ~~~~~~~~~v~~HE~gH~~~a~~~g~~v~~FsiGfGp~l~~~~~~~tey~i~~~plGg~v~~~g~~~~~~~~~~~~~~~~   87 (420)
T TIGR00054         8 ASILALAVLIFVHELGHFLAARLCGIKVERFSIGFGPKILKFKKNGTEYAISLIPLGGYVKMKGLDKEMEVKPPETDGDL   87 (420)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHcCCEEEEEEEccCchheEEecCCeEEEEEEecCcceEeeccCCcccccCCcchhhhh
Confidence            345667788999999999999999999862  11222            1346789999999411    1          


Q ss_pred             ---cCccceeEEEecchhHHHHHHHHHHHHhh
Q 015105          223 ---SKREDLLKVAAAGPLAGFSLGFVLFLVGF  251 (413)
Q Consensus       223 ---~~r~~lf~IaiAGPlag~lval~~l~~g~  251 (413)
                         .+.++++.|.+|||++|+++|++++.+.+
T Consensus        88 f~~~~~~~r~~i~~aGp~~N~~~a~~~~~~~~  119 (420)
T TIGR00054        88 FNNKSVFQKAIIIFAGPLANFIFAIFVYIFIS  119 (420)
T ss_pred             hccCCHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence               24577899999999999999988876543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.47  E-value=6.9e-13  Score=138.59  Aligned_cols=84  Identities=23%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCc--cccc-------------cceeeeeeeEEEccccc----------
Q 015105          168 NGLPGALVTALVIGVHELGHILAAKSTGVELGVP--YFVP-------------SWQIGSFGAITRIRNIV----------  222 (413)
Q Consensus       168 ~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P--~fiP-------------~~~Lg~fGavi~~~~~~----------  222 (413)
                      .-+.+.+++..++++||+||+++||++|+|+..=  .|=|             .+.+-|+|+++++.+..          
T Consensus         6 ~i~~fil~l~~li~vHElGHfl~Ar~~gv~V~~FsiGfGp~l~~~~~~~~Tey~i~~iPlGGyVk~~~e~~~~~~~~~~~   85 (449)
T PRK10779          6 NLAAFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDRQGTEYVIALIPLGGYVKMLDERVEPVAPELRH   85 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEEEeecChhHeeEecCCCcEEEEEEEcCCCeeecCCCCCCcCChhhhh
Confidence            3445666777888999999999999999999641  1222             13466899999985431          


Q ss_pred             -----cCccceeEEEecchhHHHHHHHHHHHHhh
Q 015105          223 -----SKREDLLKVAAAGPLAGFSLGFVLFLVGF  251 (413)
Q Consensus       223 -----~~r~~lf~IaiAGPlag~lval~~l~~g~  251 (413)
                           .+.++++.|.+|||++|+++|++++..-+
T Consensus        86 ~~f~~k~~~~R~~i~~AGp~~N~ila~~~~~~~~  119 (449)
T PRK10779         86 HAFNNKTVGQRAAIIAAGPIANFIFAIFAYWLVF  119 (449)
T ss_pred             hhhccCCHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                 23477899999999999999988765443

>COG1994 SpoIVFB Zn-dependent proteases [General function prediction only]

Probab=99.28  E-value=1.6e-11  Score=117.91  Aligned_cols=128  Identities=24%  Similarity=0.293  Sum_probs=84.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEccccccCccceeEEE-------ec-chh
Q 015105          166 LTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVA-------AA-GPL  237 (413)
Q Consensus       166 ~~~gl~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~~~r~~lf~Ia-------iA-GPl  237 (413)
                      +.++......++..+..||+||...++++|.+..      ...++.+|++...+..+.+.+..+.+.       .| ||+
T Consensus        41 ~~~~~~~~~~l~~rl~l~~~gh~~~~~~~~~~l~------~~~i~~~~g~~~~~~~~v~~~~~~~~~~~g~lvs~algpl  114 (230)
T COG1994          41 LGDGTAAFVGLAHRLVLHPLGHSDEAGRLGLKLL------LALLFGFGGFGFLKPVPVNPRGEFLIRLAGPLVSLALGPL  114 (230)
T ss_pred             HhhhHHHHHHHhHHHhhhHhhHHHHHHHHHHHHH------HHHHHhccceeeecCcCcCHHHHhhhhccchhHHHHHHHH
Confidence            4455555555777899999999999999999885      333334677777776655555444444       44 555


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCC
Q 015105          238 AGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGE  317 (413)
Q Consensus       238 ag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigp  317 (413)
                      .|+.+++.+ ...  .+..                               .........+...+.+|+++++|||+|++|
T Consensus       115 ~ni~la~~~-~~~--~~~~-------------------------------~~~~~~~~~~~~la~~Nl~L~lFNLiPi~P  160 (230)
T COG1994         115 TNIALAVLG-LLA--LSLF-------------------------------LYHSVLFAFLAALALVNLVLALFNLLPIPP  160 (230)
T ss_pred             HHHHHHHHH-HHh--hccc-------------------------------ccchhHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            555555443 110  0000                               000001112335678999999999999999


Q ss_pred             CchHHHHHHhhhhHHH
Q 015105          318 LDGGRIAFALWGRKAS  333 (413)
Q Consensus       318 LDGGrIl~allg~r~~  333 (413)
                      |||||++|+++.++..
T Consensus       161 LDGg~vlr~~~~~~~~  176 (230)
T COG1994         161 LDGGRVLRALLPRRYG  176 (230)
T ss_pred             CChHHHHHHHccHHHH
Confidence            9999999999887765

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=98.86  E-value=2.2e-09  Score=108.53  Aligned_cols=244  Identities=14%  Similarity=0.075  Sum_probs=137.9

Q ss_pred             cccccceeeeccccccCCeEEEEeccCCchHHHHHHHHHHHHhhhCCceEEEEeecCCCCCcEEEEecCCCCCCCCCCch
Q 015105           49 QVFGFDTFFVTNQEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP  128 (413)
Q Consensus        49 ~~f~~~tf~~t~~~~~~~gvi~rGnLr~~~~~~~~~l~~~l~~~~gd~y~lf~~~~~~~~kpv~~~~P~~~~~~~~~~~~  128 (413)
                      .++..++|+..+..+ +..+++.|.+.......+..+....  ..|..+         ...|+.-     +.....   +
T Consensus        82 ~~~~~~~f~~~~~~~-~~~~~~~Gp~~n~i~~~~~~~~~~~--~~G~~~---------~~~~~~~-----~v~~~s---~  141 (375)
T COG0750          82 PEPRPRAFNAKSVWQ-RIAIVFAGPLFNFILAIVLFVVLFF--VIGLVP---------VASPVVG-----EVAPKS---A  141 (375)
T ss_pred             cCcchhhhhcccccc-hhheeechHHHHHHHHHHHHHhhhe--Eeeeee---------eccCeee-----ecCCCC---H
Confidence            588889999999998 8999999999887765555544332  222111         1112211     001110   0


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhhhhhccchHHHHhHHHHHHH----HHHHHHHH--HHHHHHHHHHcCCcccCcc
Q 015105          129 EWFAAGAFGLVTVFTLLLRNVPALQSNLLSTFDNLNLLTNGLPGALV----TALVIGVH--ELGHILAAKSTGVELGVPY  202 (413)
Q Consensus       129 ~~~~~~l~~l~t~~t~~~~~~~~l~~~~~~~~~~~~~~~~gl~~al~----l~~iL~iH--ElGH~laAr~~Gv~~~~P~  202 (413)
                                 +..+.+..|...+..+- +...+.+..........+    .+.+.+.|  |..|..+++.++.....|+
T Consensus       142 -----------a~~a~l~~Gd~iv~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~  209 (375)
T COG0750         142 -----------AALAGLRPGDRIVAVDG-EKVASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPV  209 (375)
T ss_pred             -----------HHHcCCCCCCEEEeECC-EEccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeecc
Confidence                       11112333332222221 122233322221211111    35667788  9999999998888888898


Q ss_pred             ccccceeeeeeeEEE--ccccccC-----ccceeEEEecchhHHHHHHHHHHHHhhhcCCCCCccccccccchhhhhhHH
Q 015105          203 FVPSWQIGSFGAITR--IRNIVSK-----REDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG  275 (413)
Q Consensus       203 fiP~~~Lg~fGavi~--~~~~~~~-----r~~lf~IaiAGPlag~lval~~l~~g~~l~~~~~~~~~~~~~~f~~s~L~g  275 (413)
                      ++| ...+..+..++  ..+..++     ++...++..+++++ ..+.-...+.++.++...    ......++.+.+.|
T Consensus       210 ~~~-~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~-~~v~~~~~~~~~~~~~l~----~~~~~~~~~~~l~G  283 (375)
T COG0750         210 VIP-LKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVG-LAVEKTGRLVKLTLKMLK----KLITGDLSLKNLSG  283 (375)
T ss_pred             eec-cCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHH-HHHHHHHHHHHHHHHHHH----HheecccccccccC
Confidence            876 45566665553  3344444     78899999999998 344444444443322000    00011122222222


Q ss_pred             HHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhhhhHH
Q 015105          276 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGRKA  332 (413)
Q Consensus       276 ~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDGGrIl~allg~r~  332 (413)
                      .+.....++...  +....|++.+++|+|+.++++||+|+++|||||++++++.++.
T Consensus       284 pi~i~~~~~~~~--~~~~~~~l~~~~~lsi~lg~lNllP~p~LDGG~i~~~~~e~~~  338 (375)
T COG0750         284 PIGIAKIAGAAA--SLGLINLLFFLALLSINLGILNLLPIPPLDGGHLLFYLLEALR  338 (375)
T ss_pred             ceehhhhhhHHH--hhHHHHHHHHHHHHHHHHHHHhccCCCccCccHHHHHHHHHHh
Confidence            222111111100  1235689999999999999999999999999999999976654

>PF13398 Peptidase_M50B: Peptidase M50B-like

Probab=97.26  E-value=0.00036  Score=65.90  Aligned_cols=65  Identities=31%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCccccccceeee-eeeEEEccccccCccceeEEEecchhHHHHHHHHHHHHh
Q 015105          178 LVIGVHELGHILAAKSTGVELGVPYFVPSWQIGS-FGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  250 (413)
Q Consensus       178 ~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~-fGavi~~~~~~~~r~~lf~IaiAGPlag~lval~~l~~g  250 (413)
                      ....+||+||.++|...|-|+.      .+.+.+ -++.+..+.  +++...+.++.|||++..+++..++..+
T Consensus        23 l~t~~HE~gHal~a~l~G~~v~------~i~l~~~~~G~~~~~~--~~~~~~~~i~~aGyl~~~l~g~~~~~~~   88 (200)
T PF13398_consen   23 LVTFVHELGHALAALLTGGRVK------GIVLFPDGSGVTVSSG--PSGIGRFLIALAGYLGPALFGLLLLWLL   88 (200)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc------eEEEEeCCCceEEEec--CCCcchhHHhcccchHHHHHHHHHHHHH
Confidence            4588999999999999999997      444433 477777766  5666788999999999999887776655

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.0045  Score=63.86  Aligned_cols=83  Identities=29%  Similarity=0.304  Sum_probs=54.7

Q ss_pred             HhHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEcccccc---CccceeEEEecchhHHHHH
Q 015105          167 TNGLPGAL-VTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVS---KREDLLKVAAAGPLAGFSL  242 (413)
Q Consensus       167 ~~gl~~al-~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~~---~r~~lf~IaiAGPlag~lv  242 (413)
                      +++++|.+ .++....+||+||+|+|.+.|+++.-  |-=.+..--=||++.++..--   +.-+...|.-||--=||++
T Consensus       120 l~~I~yf~t~lvi~~vvHElGHalAA~segV~vng--fgIfi~aiyPgafvdl~~dhLqsl~~fr~LrIfcAGIWHNfvf  197 (484)
T KOG2921|consen  120 LSGIAYFLTSLVITVVVHELGHALAAASEGVQVNG--FGIFIAAIYPGAFVDLDNDHLQSLPSFRALRIFCAGIWHNFVF  197 (484)
T ss_pred             cccchhhhhhHHHHHHHHHhhHHHHHHhcCceeee--eEEEEEEEcCchhhhhhhhHHhhcchHHHHHHHhhhHHHHHHH
Confidence            44555544 46678899999999999999999861  100011111277777654321   1123458889999999999


Q ss_pred             HHHHHHHhh
Q 015105          243 GFVLFLVGF  251 (413)
Q Consensus       243 al~~l~~g~  251 (413)
                      |+++.+.-.
T Consensus       198 allc~lal~  206 (484)
T KOG2921|consen  198 ALLCVLALF  206 (484)
T ss_pred             HHHHHHHHH
Confidence            988766544

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=95.89  E-value=0.025  Score=57.42  Aligned_cols=82  Identities=28%  Similarity=0.409  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcc--ccc-------c------ceeeeeeeEEEcccccc-----------
Q 015105          170 LPGALVTALVIGVHELGHILAAKSTGVELGVPY--FVP-------S------WQIGSFGAITRIRNIVS-----------  223 (413)
Q Consensus       170 l~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~--fiP-------~------~~Lg~fGavi~~~~~~~-----------  223 (413)
                      +.+.+.+...+..||+||++.||++|+++....  |-|       .      +..-+.|+++++.....           
T Consensus         6 i~~i~~~~~lv~~he~gh~~~a~~~~~~v~~f~ig~g~~l~~~~~~~~~~~~i~~~plggyv~~~~~~~~~~~~~~~~~~   85 (375)
T COG0750           6 IAFIIALGVLVFVHELGHFWVARRCGVKVERFSIGFGPKLFSRKDKGGTEYVLSAIPLGGYVKMLGEDAEEVVLKGPEPR   85 (375)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHhcCceeEEEEeccCcceEEEEcCCceEEEEeecCccceEEEecCccccccccccCcc
Confidence            445566777889999999999999999986421  112       1      12345677765533211           


Q ss_pred             -------CccceeEEEecchhHHHHHHHHHHHHhh
Q 015105          224 -------KREDLLKVAAAGPLAGFSLGFVLFLVGF  251 (413)
Q Consensus       224 -------~r~~lf~IaiAGPlag~lval~~l~~g~  251 (413)
                             +-+..+.+..+||++|++.++.......
T Consensus        86 ~~~f~~~~~~~~~~~~~~Gp~~n~i~~~~~~~~~~  120 (375)
T COG0750          86 PRAFNAKSVWQRIAIVFAGPLFNFILAIVLFVVLF  120 (375)
T ss_pred             hhhhhcccccchhheeechHHHHHHHHHHHHHhhh
Confidence                   1122577889999999987777666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii} Length = 224

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 44/212 (20%), Positives = 76/212 (35%), Gaps = 46/212 (21%)

Query: 156 LLSTFDNLNLLTNGLPGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAI 215
           ++     +N         ++  + + +HELGH   AK  GV++     +P       G +
Sbjct: 27  VIIGLSIMNNSIFWAVLFILLFVSVVLHELGHSYVAKKYGVKIEKILLLP------IGGV 80

Query: 216 TRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVGFIFPPSDGIGIVVDASVFHESFLAG 275
             +  I  + E  L++  AGPL  F +G VL +V   F  +     +             
Sbjct: 81  AMMDKIPKEGE--LRIGIAGPLVSFIIGIVLLIVSQFFDININGYPL------------- 125

Query: 276 GFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFAL----WGRK 331
                                L   +   L++   N IPA  +DGGRI  A+    +G  
Sbjct: 126 ---------------------LYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSKKYGYL 164

Query: 332 ASTRLTGVSIVLLGLSSLFSDVTFYWVVLVFF 363
            ST++       L L  L   +    ++L+  
Sbjct: 165 KSTKIAANIGKSLALIMLLFGLLSMNIILILV 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 68/445 (15%), Positives = 125/445 (28%), Gaps = 145/445 (32%)

Query: 18  MEKLLVDPRCQPQQLDEYIR--IPKETID-ILK--DQVFG----FDTFFVTNQEPYEGGV 68
            +  + +  C+   + +  +  + KE ID I+   D V G    F T     +E  +   
Sbjct: 26  EDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ--K 81

Query: 69  LFKGNLRGQAAKTYEKISTRMKNKFGDQYKLFLLVNPEDDKPVAVVVPRKTLQPETTAVP 128
             +  LR      Y+ + + +K +      +  +   + D+                   
Sbjct: 82  FVEEVLR----INYKFLMSPIKTEQRQPSMMTRMYIEQRDR------------------- 118

Query: 129 EWFAAGAFGLVTVFTLLLRNVP------ALQSNLLSTFDNLNLLTNGLPGALVTALVIGV 182
                  +    VF     NV        L+  LL      N+L +G+ G+  T + + V
Sbjct: 119 ------LYNDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 183 HELGHILAAKSTGVELGVPY--------------------------FVPSWQIGSFGAIT 216
                     S  V+  + +                            P+W   S  +  
Sbjct: 171 --------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 217 ----------RIRNIVSKR---EDLL---KVAAAGPLAGFSLG-FVLFL-----VGFIFP 254
                      +R ++  +     LL    V  A     F+L   +L       V     
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Query: 255 PSDGIGIVVD--ASVFHESFLAGGFAKLLLGDVLKDGTP---ISVNPLVIWAWAGLLINA 309
            +    I +D  +       +     K L  D      P   ++ NP  +          
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRL---------- 330

Query: 310 INSIPAGELDGGRIAFALWGRKASTRLTGVSIVLLGLSSLFSDVT--FYWVVLVFFLQRG 367
             SI A  +  G   +  W      +LT  +I+   L+ L        +  + VF     
Sbjct: 331 --SIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVF----- 381

Query: 368 PIAPLSEEITDPDDKYIALGVLVLF 392
                      P   +I   +L L 
Sbjct: 382 -----------PPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3b4r_A	224	Putative zinc metalloprotease MJ0392; intramembran	99.9

>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=1.2e-23  Score=199.68  Aligned_cols=120  Identities=30%  Similarity=0.456  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCcccCccccccceeeeeeeEEEccccccCccceeEEEecchhHHHHHHHHHHHHh
Q 015105          171 PGALVTALVIGVHELGHILAAKSTGVELGVPYFVPSWQIGSFGAITRIRNIVSKREDLLKVAAAGPLAGFSLGFVLFLVG  250 (413)
Q Consensus       171 ~~al~l~~iL~iHElGH~laAr~~Gv~~~~P~fiP~~~Lg~fGavi~~~~~~~~r~~lf~IaiAGPlag~lval~~l~~g  250 (413)
                      .++++++.++.+||+||+++||++|++++..      .+.+||+++++++.  +|+++++|++|||++|++++++++.+.
T Consensus        42 ~~~l~l~~~v~~HElgH~~~A~~~G~~~~~i------~l~p~Gg~~~~~~~--~~~~~~~ValAGPl~nl~la~~~~~~~  113 (224)
T 3b4r_A           42 VLFILLFVSVVLHELGHSYVAKKYGVKIEKI------LLLPIGGVAMMDKI--PKEGELRIGIAGPLVSFIIGIVLLIVS  113 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE------EECSSSCBCCCCCC--CSSSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCccccE------EEEEeeeEEEcccC--CccceeeeeeeHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999999999754      44558999988764  358899999999999999998877664


Q ss_pred             hhcCCCCCccccccccchhhhhhHHHHHHHhhccccCCCCCccchHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHhhhh
Q 015105          251 FIFPPSDGIGIVVDASVFHESFLAGGFAKLLLGDVLKDGTPISVNPLVIWAWAGLLINAINSIPAGELDGGRIAFALWGR  330 (413)
Q Consensus       251 ~~l~~~~~~~~~~~~~~f~~s~L~g~la~l~LG~~l~~~~~v~~~pl~~ag~~gl~ltafNLLPigpLDGGrIl~allg~  330 (413)
                      ...+..                           +     .  ....+...+|+|+.+++|||+|++||||||++++++++
T Consensus       114 ~~~~~~---------------------------~-----~--~~~~~~~~~~iNl~l~~fNLlPi~PLDGgril~~ll~~  159 (224)
T 3b4r_A          114 QFFDIN---------------------------I-----N--GYPLLYTLSLLNLMLGGFNLIPAFPMDGGRILRAILSK  159 (224)
T ss_dssp             TTCCCE---------------------------E-----T--TEEHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHHHH
T ss_pred             HHccCc---------------------------c-----h--HHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHhcc
Confidence            322110                           0     0  01224467999999999999999999999999999887


Q ss_pred             HH
Q 015105          331 KA  332 (413)
Q Consensus       331 r~  332 (413)
                      |.
T Consensus       160 ~~  161 (224)
T 3b4r_A          160 KY  161 (224)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00