Citrus Sinensis ID: 015121

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccc
ccEEEcccccEccccHHHHHccccccccccccccccccccccccccccEEEEcccccccccEccccccccEEEccccccccccccccccccccccccccHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcc
mqvktfanhfvsspnSRLKLLSQSLTSCSKTFLISTTLQwhssllpsrlcvfapkdhqkrFITTCLsssqefasendisdtsvslsaeKEEEEKAVEVKTEGLADQSIWNQIKEIMKftgpatglwicgplmslidtavigqgsslelaalgpgtvlcdnMSYIFMFLSIATSNLVAtsltnrdkneVQHQISVLLFVGLACGFSMLIFTKFFGMQAlsaftgsknvhilpaaNKYVQIRGLAWPAVLTGWVAQsaslgmkdswgPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQkgynafaisiplpsELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCtvwgeplaqtAQSFMPEFLYGMNrnlakhgcc
mqvktfanhfvsspnsrLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLsssqefasendisdtsvslsaekEEEEKavevktegladqsIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSaekeeeekavevkTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
*******************LLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCL************************************LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNL******
****************************************************************************************************************KEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLT****NEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRN**KHGC*
********HFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSS*******************************EGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
*QVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFA*******************************DQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MQVKTFANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQKRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGCC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
Q8W4G3 559 MATE efflux family protei yes no 0.866 0.640 0.671 1e-142
Q945F0 543 Enhanced disease suscepti no no 0.743 0.565 0.703 1e-129
Q84K71 521 MATE efflux family protei no no 0.818 0.648 0.250 1e-15
Q9SFB0 526 MATE efflux family protei no no 0.619 0.486 0.256 1e-09
Q9SVE7 560 MATE efflux family protei no no 0.631 0.466 0.249 1e-09
Q9SYD6 515 MATE efflux family protei no no 0.631 0.506 0.246 1e-07
>sp|Q8W4G3|MATE4_ARATH MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1 Back     alignment and function desciption
 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/371 (67%), Positives = 293/371 (78%), Gaps = 13/371 (3%)

Query: 51  VFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVE----------V 98
           V  PK   K  RF+  C S++QE   + +  + S+S   + +    ++           V
Sbjct: 44  VSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSIS-ELQGDAANGSISPVEVEAEVEEV 102

Query: 99  KTEGLADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLC 158
           K + LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTAVIGQGSSLELAALGP TV+C
Sbjct: 103 KVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVIC 162

Query: 159 DNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQAL 218
           D + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+GLACG +M++ T+ FG  AL
Sbjct: 163 DYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFIGLACGVTMMVLTRLFGSWAL 222

Query: 219 SAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNG 278
           +AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASLGMKDSWGPLKAL VASA+NG
Sbjct: 223 TAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAING 282

Query: 279 IGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFEL 338
           +GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KGY+AF+  +P PSELL IF L
Sbjct: 283 VGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGL 342

Query: 339 AAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPE 398
           AAPVF+ MMSKV F+TLL YFATSMGT  +AAHQVM+Q   M TVWGEPL+QTAQSFMPE
Sbjct: 343 AAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPE 402

Query: 399 FLYGMNRNLAK 409
            L+G+NRNL K
Sbjct: 403 LLFGINRNLPK 413

Arabidopsis thaliana (taxid: 3702)
>sp|Q945F0|EDS5_ARATH Enhanced disease susceptibility 5 OS=Arabidopsis thaliana GN=EDS5 PE=2 SV=1 Back     alignment and function description
>sp|Q84K71|MATE2_ARATH MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB0|FRD3_ARATH MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVE7|MATE3_ARATH MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2 Back     alignment and function description
>sp|Q9SYD6|MATE1_ARATH MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
224103339 553 predicted protein [Populus trichocarpa] 0.978 0.730 0.659 1e-151
255543827 567 DNA-damage-inducible protein f, putative 0.937 0.682 0.680 1e-150
255543829 552 DNA-damage-inducible protein f, putative 0.975 0.730 0.661 1e-149
297821327 547 hypothetical protein ARALYDRAFT_480999 [ 0.907 0.685 0.672 1e-145
357473485 550 Enhanced disease susceptibility [Medicag 0.937 0.703 0.655 1e-143
225427734 535 PREDICTED: MATE efflux family protein 4, 0.857 0.661 0.722 1e-143
297744747 621 unnamed protein product [Vitis vinifera] 0.966 0.642 0.635 1e-142
225427736 567 PREDICTED: MATE efflux family protein 4, 0.961 0.700 0.638 1e-142
20197910 555 expressed protein [Arabidopsis thaliana] 0.866 0.645 0.671 1e-140
240254500 559 MATE efflux family protein [Arabidopsis 0.866 0.640 0.671 1e-140
>gi|224103339|ref|XP_002313018.1| predicted protein [Populus trichocarpa] gi|222849426|gb|EEE86973.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 271/411 (65%), Positives = 319/411 (77%), Gaps = 7/411 (1%)

Query: 1   MQVKTF--ANHFVSSPNSRLKLLSQSLTSCSKTFLISTTLQWHSSLLPSRLCVFAPKDHQ 58
           MQ +T    +H + + N   + LS+SL S  K  L   +   HSSLL     V  P    
Sbjct: 1   MQARTLLHCSHTLQNHNHP-RFLSRSLISFKKRPLSLVSPNSHSSLLHPIPLVIKPS--- 56

Query: 59  KRFITTCLSSSQEFASENDISDTSVSLSAEKEEEEKAVEVKTEGLADQSIWNQIKEIMKF 118
            R +  C S + E A+ +   + S + S  +  EE  +EV  EGL +QS+W Q+KEI+ F
Sbjct: 57  -RLLAPCNSPAHESANNSVTENESSTDSISEFIEETGIEVNREGLENQSMWEQMKEIVMF 115

Query: 119 TGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVAT 178
           TGPATGLWICGPLMSLIDTAVIGQGSS+ELAALGPGTVLCD MSYIFMFLSIATSN+VAT
Sbjct: 116 TGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDGMSYIFMFLSIATSNMVAT 175

Query: 179 SLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQ 238
           SL  +DKNEVQHQ+S+LLF+GL CG  M +FTKFFG  AL AF GS N+ I+PAAN YVQ
Sbjct: 176 SLAKQDKNEVQHQLSMLLFIGLTCGSLMFLFTKFFGPSALKAFAGSNNLDIIPAANTYVQ 235

Query: 239 IRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWA 298
           IRGLAWPA+L GWVAQSASLGMKDSWGPLKAL VASAVNGIGDIVLCRFLGYGIAGAAWA
Sbjct: 236 IRGLAWPAILIGWVAQSASLGMKDSWGPLKALAVASAVNGIGDIVLCRFLGYGIAGAAWA 295

Query: 299 TMASQVIAAYMMIINLNQKGYNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTY 358
           TMASQ++AA+MMI +LN+KGYNA+AIS+P   +L+ +F LAAP F+MM+SKVAFF+L+ Y
Sbjct: 296 TMASQIVAAFMMIDSLNKKGYNAYAISVPSTDDLMIVFRLAAPAFIMMISKVAFFSLIVY 355

Query: 359 FATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAK 409
           F TSM T+TLAAHQVMIQ   MCTVWGEPL+Q AQSFMPE +YG+NR+L K
Sbjct: 356 FVTSMDTLTLAAHQVMIQAFFMCTVWGEPLSQAAQSFMPELMYGVNRSLEK 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543827|ref|XP_002512976.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547987|gb|EEF49479.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255543829|ref|XP_002512977.1| DNA-damage-inducible protein f, putative [Ricinus communis] gi|223547988|gb|EEF49480.1| DNA-damage-inducible protein f, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297821327|ref|XP_002878546.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] gi|297324385|gb|EFH54805.1| hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357473485|ref|XP_003607027.1| Enhanced disease susceptibility [Medicago truncatula] gi|355508082|gb|AES89224.1| Enhanced disease susceptibility [Medicago truncatula] Back     alignment and taxonomy information
>gi|225427734|ref|XP_002274783.1| PREDICTED: MATE efflux family protein 4, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744747|emb|CBI38009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427736|ref|XP_002274813.1| PREDICTED: MATE efflux family protein 4, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|20197910|gb|AAD23682.2| expressed protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|240254500|ref|NP_565509.4| MATE efflux family protein [Arabidopsis thaliana] gi|75162471|sp|Q8W4G3.1|MATE4_ARATH RecName: Full=MATE efflux family protein 4, chloroplastic; AltName: Full=Protein DTX46; Flags: Precursor gi|17065002|gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|22136238|gb|AAM91197.1| unknown protein [Arabidopsis thaliana] gi|330252070|gb|AEC07164.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
TAIR|locus:2050140 559 AT2G21340 [Arabidopsis thalian 0.915 0.676 0.652 1.5e-129
TAIR|locus:2120267 543 EDS5 "AT4G39030" [Arabidopsis 0.743 0.565 0.703 2.6e-118
TAIR|locus:2057135 521 AT2G38330 "AT2G38330" [Arabido 0.665 0.527 0.267 2e-17
TAIR|locus:2077477 526 FRD3 "FERRIC REDUCTASE DEFECTI 0.510 0.401 0.287 6.6e-15
TAIR|locus:2008236 515 AT1G51340 [Arabidopsis thalian 0.527 0.423 0.248 1.7e-12
UNIPROTKB|Q8E8P4 455 dinF "DNA damage-inducible mul 0.670 0.608 0.238 7.7e-12
TIGR_CMR|SO_4617 455 SO_4617 "DNA-damage-inducible 0.670 0.608 0.238 7.7e-12
UNIPROTKB|P28303 459 dinF "DinF MATE Transporter" [ 0.607 0.546 0.241 8.2e-10
TAIR|locus:2121783 560 AT4G38380 [Arabidopsis thalian 0.462 0.341 0.248 9.9e-10
UNIPROTKB|Q5LPD9 441 dinF "DNA-damage-inducible pro 0.615 0.575 0.242 4.6e-09
TAIR|locus:2050140 AT2G21340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
 Identities = 255/391 (65%), Positives = 296/391 (75%)

Query:    32 FLISTTLQ-WHSSLLPSRL-CVFAPKDHQK--RFITTCLSSSQEFASENDISDTSVSLSX 87
             F  S TL+ W+ S    R   V  PK   K  RF+  C S++QE   + +  + S+S   
Sbjct:    23 FPSSLTLRSWNPSFPSFRSSAVSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSISELQ 82

Query:    88 XXXXXXXXXXXXTEG---------LADQSIWNQIKEIMKFTGPATGLWICGPLMSLIDTA 138
                          E          LA QSIW Q+KEI+ FTGPA GLW+CGPLMSLIDTA
Sbjct:    83 GDAANGSISPVEVEAEVEEVKVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTA 142

Query:   139 VIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEVQHQISVLLFV 198
             VIGQGSSLELAALGP TV+CD + Y FMFLS+ATSNLVATSL  +DK+EVQHQIS+LLF+
Sbjct:   143 VIGQGSSLELAALGPATVICDYLCYTFMFLSVATSNLVATSLARQDKDEVQHQISILLFI 202

Query:   199 GLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASL 258
             GLACG +M++ T+ FG  AL+AFTG KN  I+PAANKYVQIRGLAWPAVL GWVAQSASL
Sbjct:   203 GLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASL 262

Query:   259 GMKDSWGPLKALVVASAVNGIGDIVLCRFLGYGIAGAAWATMASQVIAAYMMIINLNQKG 318
             GMKDSWGPLKAL VASA+NG+GD+VLC FLGYGIAGAAWATM SQV+AAYMM+  LN+KG
Sbjct:   263 GMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKG 322

Query:   319 YNAFAISIPLPSELLAIFELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTL 378
             Y+AF+  +P PSELL IF LAAPVF+ MMSKV F+TLL YFATSMGT  +AAHQVM+Q  
Sbjct:   323 YSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIY 382

Query:   379 MMCTVWGEPLAQTAQSFMPEFLYGMNRNLAK 409
              M TVWGEPL+QTAQSFMPE L+G+NRNL K
Sbjct:   383 TMSTVWGEPLSQTAQSFMPELLFGINRNLPK 413
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
TAIR|locus:2120267 EDS5 "AT4G39030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057135 AT2G38330 "AT2G38330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077477 FRD3 "FERRIC REDUCTASE DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008236 AT1G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q8E8P4 dinF "DNA damage-inducible multidrug and toxin efflux protein DinF" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4617 SO_4617 "DNA-damage-inducible protein F" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P28303 dinF "DinF MATE Transporter" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TAIR|locus:2121783 AT4G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LPD9 dinF "DNA-damage-inducible protein F" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8W4G3MATE4_ARATHNo assigned EC number0.67110.86680.6404yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0426
hypothetical protein (553 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIII.2315.1
hypothetical protein (458 aa)
  •     0.417
gw1.II.1185.1
hypothetical protein (525 aa)
  •     0.416
estExt_Genewise1_v1.C_LG_XII0217
hypothetical protein (451 aa)
  •     0.412
gw1.125.175.1
hypothetical protein (470 aa)
  •     0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
cd13136 424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-73
COG0534 455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-32
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-25
cd13137 432 cd13137, MATE_NorM_like, Subfamily of the multidru 6e-24
cd13138 431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-21
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 2e-16
cd13131 435 cd13131, MATE_NorM_like, Subfamily of the multidru 9e-16
cd13134 438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-15
cd13133 438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-15
cd13142 444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-13
cd13140 435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-11
PRK10367 441 PRK10367, PRK10367, DNA-damage-inducible SOS respo 3e-11
cd13143 426 cd13143, MATE_MepA_like, Subfamily of the multidru 5e-10
cd13124434 cd13124, MATE_SpoVB_like, Stage V sporulation prot 2e-09
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 5e-08
cd13132 436 cd13132, MATE_eukaryotic, Eukaryotic members of th 8e-08
pfam01554161 pfam01554, MatE, MatE 1e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-07
cd13149 434 cd13149, MATE_like_2, Uncharacterized subfamily of 3e-05
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 5e-05
cd13135 429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-04
cd13147 441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 2e-04
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 2e-04
cd13144 434 cd13144, MATE_like_4, Uncharacterized subfamily of 3e-04
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 8e-04
cd13123420 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of 0.001
cd13145 440 cd13145, MATE_like_5, Uncharacterized subfamily of 0.002
cd13146 433 cd13146, MATE_like_6, Uncharacterized subfamily of 0.004
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information 
 Score =  235 bits (603), Expect = 1e-73
 Identities = 88/301 (29%), Positives = 154/301 (51%), Gaps = 6/301 (1%)

Query: 113 KEIMKFTGPATGLWICGPLMSLIDTAVIGQ-GSSLELAALGPGTVLCDNMSYIFMFLSIA 171
           +EI+    PA    I  PL+ L+DTAV+G  GS+  L A+  GT + + + ++F FL + 
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTTIFNTLFWLFGFLRMG 62

Query: 172 TSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILP 231
           T+ LVA +L   D+ E    +   L + LA G  +++        AL     S  V    
Sbjct: 63  TTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAV--AA 120

Query: 232 AANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVLCRFLGYG 291
            A +Y++IR L  PAVL  +VA     G++D+  PL   +V + VN + D +    LG+G
Sbjct: 121 LARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLILQIVGNVVNIVLDPLFVFGLGWG 180

Query: 292 IAGAAWATMASQVIAAYMMIINLNQKGYNAFAI---SIPLPSELLAIFELAAPVFVMMMS 348
           +AGAA AT+ +Q + A + +  L ++           +P  + L  +F+L   +F+  ++
Sbjct: 181 VAGAALATVIAQYLGALLGLWLLRRRVRLLGKSLSRRLPSKAALKRLFKLNRDIFIRTLA 240

Query: 349 KVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLA 408
            +A F   T  A  +G + LAA+Q+++Q  ++ + + +  A  A++ +   L   +R  A
Sbjct: 241 LLAAFLFFTALAARLGDVILAANQILLQFWLLSSYFLDGFAYAAEALVGRALGAGDRKAA 300

Query: 409 K 409
           +
Sbjct: 301 R 301

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|182413 PRK10367, PRK10367, DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240529 cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK10189 478 MATE family multidrug exporter; Provisional 100.0
PRK00187 464 multidrug efflux protein NorA; Provisional 100.0
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766 456 multidrug efflux protein; Reviewed 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.97
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.94
PRK00187464 multidrug efflux protein NorA; Provisional 99.92
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.91
PRK15099 416 O-antigen translocase; Provisional 99.91
PRK01766456 multidrug efflux protein; Reviewed 99.9
PRK10189478 MATE family multidrug exporter; Provisional 99.89
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
TIGR01695502 mviN integral membrane protein MviN. This model re 99.87
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.84
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.82
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 99.81
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.8
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.8
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.79
COG0728 518 MviN Uncharacterized membrane protein, putative vi 99.79
PRK15099416 O-antigen translocase; Provisional 99.71
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.71
PRK10459492 colanic acid exporter; Provisional 99.7
COG2244480 RfbX Membrane protein involved in the export of O- 99.68
PRK10459 492 colanic acid exporter; Provisional 99.64
COG2244 480 RfbX Membrane protein involved in the export of O- 99.53
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.53
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.34
KOG1347473 consensus Uncharacterized membrane protein, predic 99.03
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.9
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.82
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.6
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.31
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 97.8
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.17
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 95.73
COG4267 467 Predicted membrane protein [Function unknown] 95.29
PF04506 549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 94.8
KOG2864 530 consensus Nuclear division RFT1 protein [Cell cycl 92.31
COG4267467 Predicted membrane protein [Function unknown] 91.29
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-43  Score=353.05  Aligned_cols=301  Identities=25%  Similarity=0.304  Sum_probs=284.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Q 015121          108 IWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNE  187 (413)
Q Consensus       108 ~~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~  187 (413)
                      ..++.|+++++++|++++++++.+++++|++++||+|++++|+.++++++..+...+..|++.|+++++||++|+||+++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            44466999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHH
Q 015121          188 VQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPL  267 (413)
Q Consensus       188 ~~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~  267 (413)
                      +++..++++.+.+++++++.++.+.+.++++.+++.  ++|+.+.+..|+++..++.|+..++.++.+++|+.|++|.++
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~--~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m  169 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA--PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM  169 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence            999999999999999999999999999999999976  667999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHhh-hc-cchHHHHHHHHHHHHHHHHHHHHHHhhccc--c--cccccCCChHHHHHHHHHhHH
Q 015121          268 KALVVASAVNGIGDIVLCRF-LG-YGIAGAAWATMASQVIAAYMMIINLNQKGY--N--AFAISIPLPSELLAIFELAAP  341 (413)
Q Consensus       268 ~~~~i~~i~~i~l~~~li~~-~~-~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~--~--~~~~~~~~~~~~~~~l~~~~p  341 (413)
                      +..++++++|+++||+|+++ ++ +|+.|+++||.+++++.++++++++.|+++  .  ..+..+++++.+++++++|+|
T Consensus       170 ~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p  249 (455)
T COG0534         170 YILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLP  249 (455)
T ss_pred             HHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhccc
Confidence            99999999999999999988 57 999999999999999999999999977652  2  234458899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121          342 VFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC  412 (413)
Q Consensus       342 ~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~  412 (413)
                      .+++...+...+.+.+.+++++|++.+|+|+++.++.++.++++.|+++|+++++| +++|++| .+++|+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG-~~~Ga~~-~~~a~~  318 (455)
T COG0534         250 IFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVG-QNLGAGN-YKRARR  318 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCC-HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 8899886 577765

>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 7e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  101 bits (255), Expect = 7e-24
 Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 12/285 (4%)

Query: 106 QSIWNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIF 165
                +   ++K   P     +    M  +DT + G  S++++AA+     +        
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 166 MFLSIATSNLVATSLTNRDKNEVQHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSK 225
           + L +A   +VA       ++++  ++   L + L     ++    F     +      +
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVL-FQTQFIIRFMDVEE 123

Query: 226 NVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLKALVVASAVNGIGDIVL- 284
            +        Y+     A PA L     +S + GM  +   +    +   +N   + +  
Sbjct: 124 AMATK--TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFV 181

Query: 285 ---CRFLGYGIAGAAWATMASQVIAAYMMII----NLNQKGYNAFA-ISIPLPSELLAIF 336
                    G  G   AT     I   +++     +        F     P P EL+ +F
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241

Query: 337 ELAAPVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMC 381
            L  PV   +  +V  F ++      +G+  +AAHQV +    + 
Sbjct: 242 RLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV 286
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.88
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=7.6e-34  Score=282.99  Aligned_cols=299  Identities=16%  Similarity=0.163  Sum_probs=272.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHH
Q 015121          109 WNQIKEIMKFTGPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYIFMFLSIATSNLVATSLTNRDKNEV  188 (413)
Q Consensus       109 ~~~~k~i~~~~~P~~l~~~~~~~~~~id~~~ig~~g~~~la~~~~~~~i~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~  188 (413)
                      +++.|++++.++|.++++++..+++.+|+.+++++|++++|+++++.++..+...+..|++.+..+.++|++|++|+++.
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            45669999999999999999999999999999999999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCccchHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhCCCChHHHH
Q 015121          189 QHQISVLLFVGLACGFSMLIFTKFFGMQALSAFTGSKNVHILPAANKYVQIRGLAWPAVLTGWVAQSASLGMKDSWGPLK  268 (413)
Q Consensus       189 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  268 (413)
                      ++.+++++.+.++++++++++ ++++++++.+++.  |+++.+.+..|+++++++.++..+..++.+++++.|+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDV--EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSS--TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            999999999999999998876 6788999988855  7889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHhhccc-ccc----cccCCChHHHHHHHHHh
Q 015121          269 ALVVASAVNGIGDIVLCRF----LGYGIAGAAWATMASQVIAAYMMIINLNQKGY-NAF----AISIPLPSELLAIFELA  339 (413)
Q Consensus       269 ~~~i~~i~~i~l~~~li~~----~~~Gi~Gaa~a~~is~~i~~~~~~~~~~k~~~-~~~----~~~~~~~~~~~~~l~~~  339 (413)
                      ..+++.++|+++++++++.    +++|+.|+++|+.+++++..++.+++++|++. .+.    ++.+++++.+|++++++
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975    37999999999999999999988888866542 221    22356788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhccCCCchhccC
Q 015121          340 APVFVMMMSKVAFFTLLTYFATSMGTITLAAHQVMIQTLMMCTVWGEPLAQTAQSFMPEFLYGMNRNLAKHGC  412 (413)
Q Consensus       340 ~p~~~~~~~~~~~~~v~~~~~~~lg~~~laa~~i~~~l~~l~~~~~~~l~~a~~~~vg~~~~Ga~~~~~~~r~  412 (413)
                      +|.+++.+.+++.+.+++.+++++|++++|+|+++.++.++..++..+++++..|+++ +++|++| .+++|+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~-~~~g~~~-~~~~~~  315 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVG-HKLGEQD-TKGAAI  315 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSC-CCTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999 6788765 466654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00