Citrus Sinensis ID: 015124

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
cccccEEEcccEEEEccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccEEEEEEccEEccccccccccccccEEEEEHHHHHcccccccEEEEEccEEEEccccccccEEEEEEEEcccccEEEEEEccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHcccccccccEEEcccccEEEEEccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccc
cccccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEcccccccccccccccEcccccEEEEcccccccEEEEEEEcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccc
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYfdlglpnrdatddkVTVESAEATLKYNVAIkcatitpdeARVKEFVLKQMwkspngtirnilngtvfrepiicknvprlipGMLLVINIEQLIQLFKDLANLNWCLVISLsvfdvpegkdekteLEVYNFTGEGGVALSMYNTDESIRAFAEASMNtayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGtvesgkmtKDLALIIHGskmtrehylnTEEFIDAVADDLRARLSGKA
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESaeatlkynvaikcatitpDEARVKEFVLkqmwkspngtirnilngtvfrePIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIgtvesgkmtkdLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
*******VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD**********
***Q**KVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL****
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
***QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR*****
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MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query413 2.2.26 [Sep-21-2011]
P50218415 Isocitrate dehydrogenase N/A no 0.985 0.980 0.851 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.985 0.978 0.852 0.0
Q06197413 Isocitrate dehydrogenase yes no 0.985 0.985 0.842 0.0
Q40345433 Isocitrate dehydrogenase N/A no 0.987 0.942 0.835 0.0
P33198421 Isocitrate dehydrogenase yes no 0.970 0.952 0.652 1e-155
Q04467452 Isocitrate dehydrogenase yes no 0.970 0.887 0.652 1e-154
Q4R502452 Isocitrate dehydrogenase N/A no 0.970 0.887 0.650 1e-154
P48735452 Isocitrate dehydrogenase yes no 0.970 0.887 0.650 1e-154
P54071452 Isocitrate dehydrogenase yes no 0.970 0.887 0.647 1e-153
P56574452 Isocitrate dehydrogenase yes no 0.970 0.887 0.645 1e-153
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/412 (85%), Positives = 369/412 (89%), Gaps = 5/412 (1%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTV
Sbjct: 1   MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+P
Sbjct: 61  ESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIP 120

Query: 121 RLIPGMLLVINIEQLIQLFKDLANLNWCLVIS---LSVFDVPEGKDEKTELEVYNFTGEG 177
           RL+PG    I I +    F D       ++     L +  VPEG DEKTE EVYNFTG G
Sbjct: 121 RLVPGWTKPICIGR--HAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAG 178

Query: 178 GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 237
           GVALSMYNTDES+R+FAEASMN AYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK
Sbjct: 179 GVALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238

Query: 238 SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 297
           SK+E AGIWYEHRLIDDM AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV
Sbjct: 239 SKYEEAGIWYEHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 298

Query: 298 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFT 357
           CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFT
Sbjct: 299 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFT 358

Query: 358 EKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 409
           EKLEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct: 359 EKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
5764653414 NADP-isocitrate dehydrogenase [Citrus li 0.995 0.992 0.913 0.0
224079726414 predicted protein [Populus trichocarpa] 0.995 0.992 0.870 0.0
213493066414 NADP-dependent isocitrate dehydrogenase 0.995 0.992 0.867 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 0.987 0.987 0.881 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 0.995 0.987 0.862 0.0
224135233414 predicted protein [Populus trichocarpa] 0.995 0.992 0.860 0.0
2623962412 isocitrate dehydrogenase (NADP+) [Apium 0.987 0.990 0.864 0.0
3811007412 NADP specific isocitrate dehydrogenase [ 0.987 0.990 0.866 0.0
82941453416 NADP-isocitrate dehydrogenase [Codonopsi 0.995 0.987 0.860 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 0.995 0.987 0.858 0.0
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/416 (91%), Positives = 389/416 (93%), Gaps = 5/416 (1%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLIPGMLLVINIEQLIQLFKDLANLNWCLVIS---LSVFDVPEGKDEKTELEVYNFTGEG 177
           RLIPG    I I +    F D       ++     L +  VPEGKDEKTELEVYNFTGEG
Sbjct: 121 RLIPGWTKPICIGR--HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEG 178

Query: 178 GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 237
           GVALSMYNTDESIR+FAEASMNTAYQKKWPLYLSTKNTILK YDG+FKDIFQEVYEANWK
Sbjct: 179 GVALSMYNTDESIRSFAEASMNTAYQKKWPLYLSTKNTILKNYDGKFKDIFQEVYEANWK 238

Query: 238 SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 297
           SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACK+YDG+VQSDFLAQGFGSLGLMTSVLV
Sbjct: 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKDYDGNVQSDFLAQGFGSLGLMTSVLV 298

Query: 298 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFT 357
           CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFT
Sbjct: 299 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFT 358

Query: 358 EKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 413
           EKLEAAC+GTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
Sbjct: 359 EKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 414

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|213493066|dbj|BAG84436.1| NADP-dependent isocitrate dehydrogenase [Passiflora edulis] Back     alignment and taxonomy information
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information
>gi|224135233|ref|XP_002327598.1| predicted protein [Populus trichocarpa] gi|222836152|gb|EEE74573.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2623962|emb|CAA73139.1| isocitrate dehydrogenase (NADP+) [Apium graveolens] Back     alignment and taxonomy information
>gi|3811007|dbj|BAA34112.1| NADP specific isocitrate dehydrogenase [Daucus carota] Back     alignment and taxonomy information
>gi|82941453|dbj|BAE48792.1| NADP-isocitrate dehydrogenase [Codonopsis lanceolata] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query413
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.987 0.995 0.832 1.8e-183
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.987 0.980 0.809 3e-179
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.970 0.826 0.732 4.8e-158
ZFIN|ZDB-GENE-031006-1429 idh1 "isocitrate dehydrogenase 0.983 0.946 0.648 2.9e-142
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.970 0.950 0.655 2.1e-141
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.970 0.970 0.652 5.5e-141
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.970 0.952 0.652 5.5e-141
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.973 0.889 0.656 1.9e-140
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.973 0.889 0.656 1.9e-140
UNIPROTKB|Q04467452 IDH2 "Isocitrate dehydrogenase 0.970 0.887 0.652 2.4e-140
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1780 (631.7 bits), Expect = 1.8e-183, P = 1.8e-183
 Identities = 342/411 (83%), Positives = 372/411 (90%)

Query:     1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
             MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLI PF+ELDIKYFDLGLP+RDATDDKVT+
Sbjct:     1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query:    61 ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
             ESAEAT KYNVAIKCATITPDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP
Sbjct:    61 ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query:   121 RLIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDVP-EGKDEKTELEVYNFTGEGGV 179
             +L+PG    I I +    F D       ++       +  EGKD KTE EV+ FTGEGGV
Sbjct:   121 KLVPGWTKPICIGR--HAFGDQYRATDAVIKGPGKLTMTFEGKDGKTETEVFTFTGEGGV 178

Query:   180 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 239
             A++MYNTDESIRAFA+ASMNTAY+KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSK
Sbjct:   179 AMAMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSK 238

Query:   240 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 299
             ++AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct:   239 YDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 298

Query:   300 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 359
             DGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEK
Sbjct:   299 DGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEK 358

Query:   360 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 410
             LEAAC+GTVESGKMTKDLALIIHGSK++R+ YLNTEEFIDAVA +L+ RL+
Sbjct:   359 LEAACVGTVESGKMTKDLALIIHGSKLSRDTYLNTEEFIDAVAAELKERLN 409
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS;IMP
GO:0006102 "isocitrate metabolic process" evidence=IEA;IMP
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;NAS
GO:0006739 "NADP metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031006-1 idh1 "isocitrate dehydrogenase 1 (NADP+), soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.65030.97090.8871N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.65280.97090.8871yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.60140.96850.9779yesno
Q75JR3IDHC_DICDI1, ., 1, ., 1, ., 4, 20.61010.97820.9805yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.60140.96850.9779yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.65030.97090.8871yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.84220.98540.9854yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.64790.97090.8871yesno
P41939IDHC_YEAST1, ., 1, ., 1, ., 4, 20.59800.98060.9830yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.60340.97330.9781N/Ano
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.63270.96120.9589N/Ano
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.65280.97090.9524yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.83530.98780.9422N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.85230.98540.9783N/Ano
P50215IDH_SPHYA1, ., 1, ., 1, ., 4, 20.57930.94670.9630N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.85190.98540.9807N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.63270.96120.9589N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.63270.96120.9589N/Ano
O13285IDH1_CANTR1, ., 1, ., 1, ., 4, 20.62400.95880.9209N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.64540.97090.8871yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.61010.96850.9111yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.420.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0038019202
isocitrate dehydrogenase (NADP+) (415 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VIII0421
hypothetical protein (1021 aa)
     •• 0.907
estExt_Genewise1_v1.C_LG_X2288
hypothetical protein (1021 aa)
     •• 0.907
estExt_fgenesh4_pg.C_LG_XVI0781
SubName- Full=Putative uncharacterized protein; (363 aa)
     •••0.900
eugene3.00280188
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (361 aa)
     •••0.900
eugene3.00050378
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (339 aa)
     •• 0.900
gw1.XIV.3318.1
aconitate hydratase 1 (EC-4.2.1.3) (897 aa)
     •  0.899
eugene3.01810009
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
eugene3.00570034
aconitate hydratase 1 (EC-4.2.1.3) (899 aa)
     •  0.899
estExt_fgenesh4_pm.C_LG_IX0030
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (372 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VII0812
isocitrate dehydrogenase (NAD+) (EC-1.1.1.41) (367 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-142
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 4e-93
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 5e-36
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 1e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 3e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 1e-04
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 4e-04
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 5e-04
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 0.002
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  831 bits (2148), Expect = 0.0
 Identities = 363/412 (88%), Positives = 379/412 (91%), Gaps = 5/412 (1%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLIFPFL+LDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEF LKQMWKSPNGTIRNILNGTVFREPIICKN+P
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 121 RLIPGMLLVINIEQLIQLFKDLANLNWCLVI---SLSVFDVPEGKDEKTELEVYNFTGEG 177
           RL+PG    I I +    F D       ++     L +  VPEGKDEKTELEVYNFTG G
Sbjct: 121 RLVPGWTKPICIGR--HAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAG 178

Query: 178 GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 237
           GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WK
Sbjct: 179 GVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWK 238

Query: 238 SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 297
           SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV
Sbjct: 239 SKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 298

Query: 298 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFT 357
           CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD NARLLDFT
Sbjct: 299 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFT 358

Query: 358 EKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 409
           EKLEAAC+GTVESGKMTKDLAL+IHG K++R+ YLNTEEFIDAVA++L+ARL
Sbjct: 359 EKLEAACVGTVESGKMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410

Length = 410
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 413
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 97.3
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.94
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 95.84
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 93.17
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 92.1
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.1
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.9
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.63
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.55
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.48
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 91.35
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 91.21
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 89.53
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-110  Score=821.64  Aligned_cols=336  Identities=21%  Similarity=0.234  Sum_probs=310.8

Q ss_pred             ccccEEEECCCCccHHHHHHHHHHHhcCC---CceEEEEEecCchhhhccCCCCCHHHHHHHHhCCeeEEcccCCCcchh
Q 015124            8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR   84 (413)
Q Consensus         8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~~---~~i~~~~~~~g~~~~~~~g~~lp~~~~~ai~~~~v~lkg~~~~p~~~~   84 (413)
                      |.++|++|||||||||||+++++||.+..   ++|+|+++++|+++++++|.++|++++++|+++|++||||+++|.+..
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            56899999999999999999999987654   899999999999999999999999999999999999999999997763


Q ss_pred             hHHHHhhccCCCcchhhhhhcCceEEeeeeeccCCccccCCCcchhhhHHHHHhhhcccCCcceEEe--eeceeeecCCC
Q 015124           85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVI--SLSVFDVPEGK  162 (413)
Q Consensus        85 ~~~~~~~~~~~s~~~~LRk~ldl~an~RPv~~~~~~~~~pg~~~pl~~~r~~~~~~~~~~~iD~viv--nteG~Y~g~~~  162 (413)
                      .+     +++.|++++|||+||||||+||+      +.+||+++|+.            +++|+|||  ||||+|+|.++
T Consensus        82 ~~-----~~~~~~ll~lRk~l~lyANlRP~------k~~~~~k~~~~------------~~~D~viVREnTeG~Y~G~~~  138 (348)
T COG0473          82 LP-----RPERGLLLALRKELDLYANLRPA------KSLPGLKSPLV------------KGVDIVIVRENTEGLYFGEEG  138 (348)
T ss_pred             CC-----CcccchHHHHHHhcCceeeeeec------ccCCCCCCccC------------CCccEEEEeeCCCccccCCCc
Confidence            32     47888899999999999999999      88999988753            58999999  79999999875


Q ss_pred             CcccceeeecccCCCceEEE-eecChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccccccHHHHHHHHHHHHhhccCcc
Q 015124          163 DEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  240 (413)
Q Consensus       163 ~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNVl~~t~glf~~~~~eva~~eYp~~~  240 (413)
                      +.        ..+ .+++++ ++|||+++|||+|+|||+|++| ++|||+|||+|||+.+++|||++|+||++ +||   
T Consensus       139 ~~--------~~~-~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~-~yP---  205 (348)
T COG0473         139 RI--------LGG-GEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAK-EYP---  205 (348)
T ss_pred             cc--------cCC-CeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhh-cCC---
Confidence            21        112 248999 9999999999999999999999 68999999999999999999999999995 899   


Q ss_pred             ccCCeEEeeeeHHHHHHHHHhCCCce-EEEecCCchhhhhhhHhhhcCCcccccccccCCC-CceEEEcccccccccccc
Q 015124          241 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD-GKTIEAEAAHGTVTRHYR  318 (413)
Q Consensus       241 ~~~~I~~~~~~VD~~a~~Lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapSanig~~-~~~a~FEp~HGSAp~~~~  318 (413)
                         +|+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++ + ++||||+|||||    
T Consensus       206 ---dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~-~~lfEPvHGSAP----  277 (348)
T COG0473         206 ---DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERG-PALFEPVHGSAP----  277 (348)
T ss_pred             ---CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCC-CceeecCCCCcc----
Confidence               99999999999999999999999 9999999999999999999999999999999984 5 799999999999    


Q ss_pred             ccccCCCCccChHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhc-CCCCcchhhhhcCCcCCCccccCHHHH
Q 015124          319 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEF  397 (413)
Q Consensus       319 ~diaGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~i~~Av~~~l~~-G~~T~Dlg~~~~G~~~~~~~~~sT~e~  397 (413)
                       ||||||| |||+|+|||++|||+|+|.       .++|++|++||.+++++ |++|+|||    |       ..+|.||
T Consensus       278 -DIAGkgi-ANPiA~IlS~aMML~~~g~-------~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~  337 (348)
T COG0473         278 -DIAGKGI-ANPIATILSAAMMLRHLGE-------KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEV  337 (348)
T ss_pred             -cccCCCc-cChHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHH
Confidence             9999999 9999999999999999997       46999999999999995 69999998    6       6889999


Q ss_pred             HHHHHHHHHH
Q 015124          398 IDAVADDLRA  407 (413)
Q Consensus       398 ~daV~~~l~~  407 (413)
                      +|+|+++|.+
T Consensus       338 ~d~I~~~l~~  347 (348)
T COG0473         338 GDAIAKALAS  347 (348)
T ss_pred             HHHHHHHHhc
Confidence            9999999863

>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-156
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-148
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-148
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-148
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-148
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-147
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-142
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-139
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-137
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-111
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-105
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 6e-93
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 7e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  546 bits (1408), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/409 (65%), Positives = 311/409 (76%), Gaps = 8/409 (1%)
Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGMLLVINIEQLIQLFKDLANLNWCLVISLSVFDV---PEGKDEKTELEVYNFTGEGG 178
           L+PG    I I +      D       +V     F +   P+      + EVYNF   GG
Sbjct: 121 LVPGWTKPITIGR--HAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GG 177
Query: 179 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 238
           V + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+
Sbjct: 178 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKT 237
Query: 239 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 298
            F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVC
Sbjct: 238 DFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVC 297
Query: 299 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTE 358
           PDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F +
Sbjct: 298 PDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ 357
Query: 359 KLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 405
            LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct: 358 TLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query413
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 1e-180
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 1e-176
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-173
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-170
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 2e-18
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 3e-18
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 2e-10
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 5e-10
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 9e-10
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-09
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 3e-09
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 3e-09
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 7e-09
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 2e-08
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 2e-08
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 3e-08
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-05
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  527 bits (1358), Expect = 0.0
 Identities = 267/416 (64%), Positives = 312/416 (75%), Gaps = 8/416 (1%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGMLLVINIEQLIQLFKDLANLNWCLV---ISLSVFDVPEGKDEKTELEVYNFTGEGG 178
           L+PG    I I +      D       +V    +  +   P+      + EVYNF   GG
Sbjct: 121 LVPGWTKPITIGR--HAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GG 177

Query: 179 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 238
           V + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+
Sbjct: 178 VGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKT 237

Query: 239 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 298
            F+   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVC
Sbjct: 238 DFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVC 297

Query: 299 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTE 358
           PDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F +
Sbjct: 298 PDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQ 357

Query: 359 KLEAACIGTVESGKMTKDLALIIHGSKMT--REHYLNTEEFIDAVADDLRARLSGK 412
            LE  C+ TVESG MTKDLA  IHG       EH+LNT +F+D +  +L   L  +
Sbjct: 358 TLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 413
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 97.32
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 97.29
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 92.31
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 92.27
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 92.27
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 92.17
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 90.69
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=3.5e-111  Score=862.19  Aligned_cols=386  Identities=65%  Similarity=1.030  Sum_probs=338.1

Q ss_pred             CccceeccccEEEECCCCccHHHHHHHHHHHhcCCCceEEEEEecCchhhhccCCCCCHHHHHHHHhCCeeEEcccCCCc
Q 015124            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (413)
Q Consensus         2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~g~~~~~~~g~~lp~~~~~ai~~~~v~lkg~~~~p~   81 (413)
                      .|+||||++||++|||||||||||++++++|.+++++|+|+++++|+++++++|+++|++++++|+++|++||||++||.
T Consensus        23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~  102 (427)
T 3us8_A           23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD  102 (427)
T ss_dssp             --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHhhccCCCcchhhhhhcCceEEeeeeeccCCccccCCCcchhhhHHHHHhhhcccCCcceEEe--eeceeeec
Q 015124           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLLVINIEQLIQLFKDLANLNWCLVI--SLSVFDVP  159 (413)
Q Consensus        82 ~~~~~~~~~~~~~~s~~~~LRk~ldl~an~RPv~~~~~~~~~pg~~~pl~~~r~~~~~~~~~~~iD~viv--nteG~Y~g  159 (413)
                      +.+++++.++..|+|+|++||++||||+|+|||.++++       ++|+.           ..++|+|||  ||||+|+|
T Consensus       103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~i-------p~~~~-----------~~~~DivIvREnteg~Y~g  164 (427)
T 3us8_A          103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNV-------PRLVP-----------GWTKPIIVGRHAFGDQYRA  164 (427)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTS-------CCSST-----------TCCSCEEEEEECSSGGGGC
T ss_pred             ccccccccccccccCchHHHHHHhCCeEEecceeccCC-------CCCCC-----------CCCCCEEEEEeCCCCccCC
Confidence            87777766777899999999999999999999944433       33321           125898888  79999988


Q ss_pred             CCCCccc----------------ceeeecccCCCceEEEeecChHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHH
Q 015124          160 EGKDEKT----------------ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGR  223 (413)
Q Consensus       160 ~~~~~~~----------------~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNVl~~t~gl  223 (413)
                      .++....                +..+.++.+ .+++..++|||++++||+|+||+||++|++|||+|||+|||+.||||
T Consensus       165 ~e~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdgl  243 (427)
T 3us8_A          165 TDFKFPGKGKLSIKFVGEDGQTIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGR  243 (427)
T ss_dssp             EEEEECSSEEEEEEEEETTSCEEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHH
T ss_pred             ceeEEecCCcceeeeeccccccccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhH
Confidence            7542110                011111222 45664488999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCccccCCeEEeeeeHHHHHHHHHhCCCceEEEecCCchhhhhhhHhhhcCCcccccccccCCCCce
Q 015124          224 FKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT  303 (413)
Q Consensus       224 f~~~~~eva~~eYp~~~~~~~I~~~~~~VD~~a~~Lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapSanig~~~~~  303 (413)
                      ||++|+|||+++||++|.+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.+
T Consensus       244 fr~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~  323 (427)
T 3us8_A          244 FKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKT  323 (427)
T ss_dssp             HHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCC
T ss_pred             HHHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCe
Confidence            99999999976799888878999999999999999999999999999999999999999999999999999999988634


Q ss_pred             EEEccccccccccccccccCCCCccChHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHHHhcCCCCcchhhhhcC
Q 015124          304 IEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG  383 (413)
Q Consensus       304 a~FEp~HGSAp~~~~~diaGk~i~ANP~A~IlS~ammL~~lG~~~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G  383 (413)
                      +||||+|||||+|+++||||||++|||+|+|||++|||+|||+++.++++.++|++|++||.+|+++|++|+|||+.. +
T Consensus       324 a~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~  402 (427)
T 3us8_A          324 VEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-G  402 (427)
T ss_dssp             EEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-C
T ss_pred             EEEeCCCCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-c
Confidence            999999999998888889999988999999999999999999988888889999999999999999999999998311 0


Q ss_pred             CcCCCccccCHHHHHHHHHHHHHHHhh
Q 015124          384 SKMTREHYLNTEEFIDAVADDLRARLS  410 (413)
Q Consensus       384 ~~~~~~~~~sT~e~~daV~~~l~~~~~  410 (413)
                         +..+.++|+||+|+|+++|+++|.
T Consensus       403 ---~~~~~~~T~e~~daV~~~l~~~l~  426 (427)
T 3us8_A          403 ---PDQPWLSTTGFLDKIDENLRKAMA  426 (427)
T ss_dssp             ---TTCCCBCHHHHHHHHHHHHHHHC-
T ss_pred             ---cCCcccCHHHHHHHHHHHHHHHhc
Confidence               012369999999999999988774
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 413
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-126
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-123
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 9e-42
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 3e-37
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-32
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-29
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-27
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 3e-26
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 2e-23
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-23
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-15
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  369 bits (949), Expect = e-126
 Identities = 262/411 (63%), Positives = 306/411 (74%), Gaps = 4/411 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGMLL-VINIEQLIQLFKDLANLNWCLVISLSVFDVPEGKDEKTELEVYNFTGEGGVA 180
           L+PG    +              +       +  +   P+      + EVYNF   G V 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGG-VG 179

Query: 181 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 240
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 241 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 300
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 301 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 360
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + L
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTL 359

Query: 361 EAACIGTVESGKMTKDLALIIHGSKMT--REHYLNTEEFIDAVADDLRARL 409
           E  C+ TVESG MTKDLA  IHG       EH+LNT +F+D +  +L   L
Sbjct: 360 EKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 410
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query413
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.8
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 95.47
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 81.68
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: 3-isopropylmalate dehydrogenase, IPMDH
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.7e-100  Score=768.78  Aligned_cols=347  Identities=19%  Similarity=0.175  Sum_probs=310.8

Q ss_pred             cccEEEECCCCccHHHHHHHHHHHhcC----CCceEEEEEecCchhhhccCCCCCHHHHHHHHhCCeeEEcccCCCcchh
Q 015124            9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR   84 (413)
Q Consensus         9 ~~~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~g~~~~~~~g~~lp~~~~~ai~~~~v~lkg~~~~p~~~~   84 (413)
                      +|+|++|||||||||||+++++++.+.    +++++|+++++|++++++||+++|++++++|+++|++||||+++|.+..
T Consensus         4 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~t~e~i~~~dail~Gaig~P~~~~   83 (363)
T d1cnza_           4 NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWEN   83 (363)
T ss_dssp             CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTT
T ss_pred             CceEEEECCCCchHHHHHHHHHHHHHHhhhhCCeeEEEEEechHHHHHHhCCcCCHHHHHHHHhccceEEeccCCCCccc
Confidence            379999999999999999999987653    7899999999999999999999999999999999999999999998664


Q ss_pred             hHHHHhhccCCCcchhhhhhcCceEEeeeeeccCCccccCCCcc--hhhhHHHHHhhhcccCCcceEEe--eeceeeecC
Q 015124           85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGMLL--VINIEQLIQLFKDLANLNWCLVI--SLSVFDVPE  160 (413)
Q Consensus        85 ~~~~~~~~~~~s~~~~LRk~ldl~an~RPv~~~~~~~~~pg~~~--pl~~~r~~~~~~~~~~~iD~viv--nteG~Y~g~  160 (413)
                      .+.  ..+++.|+|+.||++||||+|+|||      +++||+++  |++...       .++++|++||  ||||+|+|.
T Consensus        84 ~~~--~~~~~~s~~~~LR~~ldlyanvRPv------~~~~g~~~~~~~~~~~-------~~~~iD~vivREnteg~Y~g~  148 (363)
T d1cnza_          84 LPP--ESQPERGALLPLRKHFKLFSNLRPA------KLYQGLEAFCPLRADI-------AANGFDILCVRELTGGIYFGQ  148 (363)
T ss_dssp             SCG--GGSTTHHHHHHHHHHHTCCEEEEEE------ECCTTCGGGCSBCHHH-------HHHCCEEEEEEECSSGGGTCS
T ss_pred             ccc--ccccccchHHHHHHHcCCceEEEEE------eecccccccccCcccc-------cCCCccEEEEEecccccccCc
Confidence            322  2246778999999999999999999      88899875  432111       1468999999  899999997


Q ss_pred             CCCcccceeeecccCCCceEEE-eecChHHHHHHHHHHHHHHHhCCCCEEEEeCCCccccccHHHHHHHHHHHHhhccCc
Q 015124          161 GKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK  239 (413)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNVl~~t~glf~~~~~eva~~eYp~~  239 (413)
                      ++..    .   ..+..+++++ +++||++++||+|+||+||++|++|||++||+|||+ +++||+++|+||++ +||  
T Consensus       149 ~~~~----~---~~~~~~~~~~~~~~t~~~~~ri~r~Af~~A~~r~~kVt~v~KaNv~k-~~~lf~~~~~eva~-~yp--  217 (363)
T d1cnza_         149 PKGR----E---GSGQYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVAK-TYP--  217 (363)
T ss_dssp             SCEE----E---CCGGGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHHT-TCT--
T ss_pred             ccee----c---cCCcceeecceEEeeHHHHHHHHHHHHHHHHhcCCceEEEccCccee-ehHHHHHHHHHHhc-cCC--
Confidence            6421    0   0111468899 999999999999999999999999999999999999 78999999999997 899  


Q ss_pred             cccCCeEEeeeeHHHHHHHHHhCCCce-EEEecCCchhhhhhhHhhhcCCcccccccccCCCCceEEEcccccccccccc
Q 015124          240 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR  318 (413)
Q Consensus       240 ~~~~~I~~~~~~VD~~a~~Lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapSanig~~~~~a~FEp~HGSAp~~~~  318 (413)
                          +|++++++||+||||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ ++||||+|||||    
T Consensus       218 ----~I~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglG~~~s~ni~~~~-~a~fEp~HGsap----  288 (363)
T d1cnza_         218 ----DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAP----  288 (363)
T ss_dssp             ----TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCG----
T ss_pred             ----CeEEehHhhhHHHHHHhhccCCCceeeehhHHHHhHHHHHHHHhcccccchheeeeccc-eEEeccCCCccc----
Confidence                99999999999999999999999 99999999999999999999999999999999887 799999999999    


Q ss_pred             ccccCCCCccChHHHHHHHHHHHHH-hcccCCchhhHHHHHHHHHHHHHHHhcCCCCcchhhhhcCCcCCCccccCHHHH
Q 015124          319 VHQKGGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEF  397 (413)
Q Consensus       319 ~diaGk~i~ANP~A~IlS~ammL~~-lG~~~~~~~l~~~A~~i~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~  397 (413)
                       ||||||+ |||+|||||++|||+| ||+       .++|++|++||.+++++|++|+||++   +     .+.+||+||
T Consensus       289 -diaGk~~-aNP~a~Ils~ammL~~~lg~-------~~~A~~i~~Av~~~l~~g~~T~Dl~~---~-----~~~~~T~e~  351 (363)
T d1cnza_         289 -DIAGKNI-ANPIAQILSLALLLRYSLDA-------NDAATAIEQAINRALEEGVRTGDLAR---G-----AAAVSTDEM  351 (363)
T ss_dssp             -GGTTTTC-SCCHHHHHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHTTCCCGGGTT---T-----TTCCCHHHH
T ss_pred             -ccCCCCc-cChHHHHHHHHHHHHhhCCC-------HHHHHHHHHHHHHHHHcCCcCccccC---C-----CCcCCHHHH
Confidence             9999999 9999999999999999 785       68999999999999999999999973   2     135799999


Q ss_pred             HHHHHHHHHH
Q 015124          398 IDAVADDLRA  407 (413)
Q Consensus       398 ~daV~~~l~~  407 (413)
                      +|+|+++|++
T Consensus       352 ~dai~~~l~~  361 (363)
T d1cnza_         352 GDIIARYVAE  361 (363)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999974
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure